Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 122 of 189
Found at i:34489648 original size:39 final size:39
Alignment explanation
Indices: 34489588--34489736 Score: 185
Period size: 39 Copynumber: 3.8 Consensus size: 39
34489578 AGGCACAAAT
*
34489588 GTACAAACAGGGGTACAAAAGTACAAATAGGGGTACTGAA
1 GTACAAACA-GGGTACCAAAGTACAAATAGGGGTACTGAA
** **
34489628 GTACAAGTAGGGTACCAAAGTACAAACGGGGGTACTGAA
1 GTACAAACAGGGTACCAAAGTACAAATAGGGGTACTGAA
*
34489667 GTACAAACAGTGGTACCGAAGTACAAATA-GGGTAC-GAAA
1 GTACAAACAG-GGTACCAAAGTACAAATAGGGGTACTG-AA
*
34489706 GTACAAACAGGGGTACCAGAGTACAAATAGG
1 GTACAAACA-GGGTACCAAAGTACAAATAGG
34489737 AATACCGAAG
Statistics
Matches: 93, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
38 1 0.01
39 68 0.73
40 24 0.26
ACGTcount: A:0.42, C:0.15, G:0.28, T:0.15
Consensus pattern (39 bp):
GTACAAACAGGGTACCAAAGTACAAATAGGGGTACTGAA
Found at i:34489661 original size:59 final size:59
Alignment explanation
Indices: 34489583--34489748 Score: 215
Period size: 59 Copynumber: 2.8 Consensus size: 59
34489573 TATAGAGGCA
* *
34489583 CAAATGTACAAACAGGGGTACAAAAGTACAAATAGGGGTACTGAAGTACAAGTAGGGTAC
1 CAAA-GTACAAACAGGGGTACAAAAGTACAAATAGGGGTACCGAAGTACAAATAGGGTAC
* ** * *
34489643 CAAAGTACAAACGGGGGTACTGAAGTACAAACAGTGGTACCGAAGTACAAATAGGGTAC
1 CAAAGTACAAACAGGGGTACAAAAGTACAAATAGGGGTACCGAAGTACAAATAGGGTAC
* * * **
34489702 GAAAGTACAAACAGGGGTACCAGAGTACAAATAGGAATACCGAAGTA
1 CAAAGTACAAACAGGGGTACAAAAGTACAAATAGGGGTACCGAAGTA
34489749 AATTCCCATA
Statistics
Matches: 90, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
59 86 0.96
60 4 0.04
ACGTcount: A:0.43, C:0.15, G:0.27, T:0.15
Consensus pattern (59 bp):
CAAAGTACAAACAGGGGTACAAAAGTACAAATAGGGGTACCGAAGTACAAATAGGGTAC
Found at i:34489748 original size:20 final size:19
Alignment explanation
Indices: 34489606--34489748 Score: 128
Period size: 20 Copynumber: 7.3 Consensus size: 19
34489596 AGGGGTACAA
*
34489606 AAGTACAAATAGGGGTACTG
1 AAGTACAAATA-GGGTACCG
* *
34489626 AAGTACAAGTAGGGTACCA
1 AAGTACAAATAGGGTACCG
** *
34489645 AAGTACAAACGGGGGTACTG
1 AAGTACAAA-TAGGGTACCG
*
34489665 AAGTACAAACAGTGGTACCG
1 AAGTACAAATAG-GGTACCG
34489685 AAGTACAAATAGGGTA-CG
1 AAGTACAAATAGGGTACCG
*
34489703 AAAGTACAAACAGGGGTACC-
1 -AAGTACAAATA-GGGTACCG
*
34489723 AGAGTACAAATAGGAATACCG
1 A-AGTACAAATAGG-GTACCG
34489744 AAGTA
1 AAGTA
34489749 AATTCCCATA
Statistics
Matches: 100, Mismatches: 15, Indels: 16
0.76 0.11 0.12
Matches are distributed among these distances:
18 2 0.02
19 32 0.32
20 64 0.64
21 2 0.02
ACGTcount: A:0.43, C:0.15, G:0.27, T:0.15
Consensus pattern (19 bp):
AAGTACAAATAGGGTACCG
Found at i:34502016 original size:27 final size:27
Alignment explanation
Indices: 34501977--34502417 Score: 570
Period size: 27 Copynumber: 16.4 Consensus size: 27
34501967 GATTCGTGGG
34501977 AAAATGACTGAAATACCCTCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* *
34502004 AAAATGACCGAAATACCCCCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* *
34502031 AAAATGACTGAAATACCCTCAAAGGAT
1 AAAATGACTGAAATACCCTCGAAGGGT
* * *
34502058 AAAATGACCGAAATATCCTCAAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
*
34502085 AAAATGATTGAAATACCCTCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
34502112 AAAATGAAC-GAAATACCCTCGAAGGGT
1 AAAATG-ACTGAAATACCCTCGAAGGGT
* *
34502139 AAAATGACTAAAATACCCTCGAAAGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
*
34502166 AAAATGACTGAAATACCCCCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* * *
34502193 AAAATGA-TCAAAATACCCTCAAAAGGT
1 AAAATGACT-GAAATACCCTCGAAGGGT
* *
34502220 AAAATGACAGAAATACCC-CGAAAGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
*
34502246 AAAATGACTAAAATACCCTCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
*
34502273 AAAATGACTAAAATACCCTCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
34502300 AAAATGA-TCGAAATACCCTCGAAGGGT
1 AAAATGACT-GAAATACCCTCGAAGGGT
* *
34502327 AAAATAACCGAAATACCCTCGAAGGGT
1 AAAATGACTGAAATACCCTCGAAGGGT
* *
34502354 AAAAT-AATCGAAATACCCCCGAAGGGT
1 AAAATGACT-GAAATACCCTCGAAGGGT
* * *
34502381 AAAATGATTGAAATACCC-CCATAGAGT
1 AAAATGACTGAAATACCCTCGA-AGGGT
34502408 AAAATGACTG
1 AAAATGACTG
34502418 TTATACTCTT
Statistics
Matches: 365, Mismatches: 39, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
26 30 0.08
27 332 0.91
28 3 0.01
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.17
Consensus pattern (27 bp):
AAAATGACTGAAATACCCTCGAAGGGT
Found at i:34502810 original size:28 final size:28
Alignment explanation
Indices: 34502770--34502833 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
34502760 CACTGTACTG
* * * *
34502770 GTTATTGTATTGGGCTAAGGCCCGCACT
1 GTTACTGTTTTGGGCTAAAGCCCACACT
34502798 GTTACTGTTTTGGGCTAAAGCCCACACT
1 GTTACTGTTTTGGGCTAAAGCCCACACT
*
34502826 -ATACTGTT
1 GTTACTGTT
34502834 ACTGTATAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
27 7 0.23
28 24 0.77
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (28 bp):
GTTACTGTTTTGGGCTAAAGCCCACACT
Found at i:34502833 original size:33 final size:34
Alignment explanation
Indices: 34502795--34502865 Score: 99
Period size: 33 Copynumber: 2.1 Consensus size: 34
34502785 TAAGGCCCGC
* *
34502795 ACTGTTACTGTTTTGGGCTAAAGCCCACACT-AT
1 ACTGTTACTGTATAGGGCTAAAGCCCACACTGAT
* *
34502828 ACTGTTACTGTATAGGGCTCAAGCCCAGACTGAT
1 ACTGTTACTGTATAGGGCTAAAGCCCACACTGAT
34502862 ACTG
1 ACTG
34502866 CATGATTACT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (34 bp):
ACTGTTACTGTATAGGGCTAAAGCCCACACTGAT
Found at i:34504981 original size:40 final size:40
Alignment explanation
Indices: 34504821--34505045 Score: 217
Period size: 40 Copynumber: 5.7 Consensus size: 40
34504811 TTGAATGCTG
* * * *
34504821 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
** *
34504861 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA-A
* *
34504901 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * *
34504941 TCCGGGTAAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
34504981 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
34505020 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
34505046 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.22
40 108 0.70
41 12 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:34505063 original size:79 final size:80
Alignment explanation
Indices: 34504901--34505078 Score: 184
Period size: 79 Copynumber: 2.2 Consensus size: 80
34504891 AGATACAAGT
* * *
34504901 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTAAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGTAAAGTCCCGAAGGCATTC
** * *
34504966 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * *
34504981 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCT-ATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGG-TAAAGTCCCGAAGGCATT
* *
34505044 TGAACGAG-GAGCTATA
65 CGAACGAGTGA-CTAAA
* *
34505060 TCC-GGTTAAATCCTGAAGG
1 TCCGGGTTAAGTCCCGAAGG
34505079 TACGTGATTT
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
78 15 0.18
79 47 0.57
80 20 0.24
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGTAAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:34509861 original size:27 final size:27
Alignment explanation
Indices: 34509809--34509867 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
34509799 ATATGCACTC
* *
34509809 CATGCATTCCATACGAATCATGCATTT
1 CATGCATTCCATACGAACCATACATTT
*
34509836 CATGCATTCCATGC-AACCCATACATTT
1 CATGCATTCCATACGAA-CCATACATTT
34509863 CATGC
1 CATGC
34509868 GGATCATGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 26 0.93
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (27 bp):
CATGCATTCCATACGAACCATACATTT
Found at i:34518035 original size:25 final size:25
Alignment explanation
Indices: 34518007--34518055 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
34517997 GTAGGCCCAT
34518007 AAATCGTCTTTTTAAA-AGAATTTTC
1 AAAT-GTCTTTTTAAAGAGAATTTTC
* *
34518032 AAATTTCTTTTTAAAGATAATTTT
1 AAATGTCTTTTTAAAGAGAATTTT
34518056 TTAAGTGCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (25 bp):
AAATGTCTTTTTAAAGAGAATTTTC
Found at i:34528301 original size:24 final size:24
Alignment explanation
Indices: 34528256--34528318 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
34528246 TGGATCTCTT
*
34528256 GAGCTTCCTGATATATGGCTCTCAC
1 GAGCTTCCCGAT-TATGGCTCTCAC
* *
34528281 GAGCTTCCCGATTATGGCTCTTAT
1 GAGCTTCCCGATTATGGCTCTCAC
*
34528305 GAGCTTACCG-TTAT
1 GAGCTTCCCGATTAT
34528319 ATAGCTCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 4 0.12
24 19 0.56
25 11 0.32
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (24 bp):
GAGCTTCCCGATTATGGCTCTCAC
Found at i:34528358 original size:25 final size:25
Alignment explanation
Indices: 34528256--34528358 Score: 75
Period size: 25 Copynumber: 4.2 Consensus size: 25
34528246 TGGATCTCTT
* * * *
34528256 GAGCTTCCTGATATATGGCTCTCAC
1 GAGCTTCCCGTTATATAGCTCACAC
* * ** *
34528281 GAGCTTCCCGAT-TATGGCTCTTAT
1 GAGCTTCCCGTTATATAGCTCACAC
* * *
34528305 GAGCTTACCGTTATATAGCTCAAAT
1 GAGCTTCCCGTTATATAGCTCACAC
34528330 GAGCTTCCCGTT-TATATGCTCACAC
1 GAGCTTCCCGTTATATA-GCTCACAC
34528355 GAGC
1 GAGC
34528359 ATTCTCGAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
24 24 0.37
25 41 0.63
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGCTCACAC
Found at i:34533019 original size:29 final size:26
Alignment explanation
Indices: 34532964--34533020 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 26
34532954 ACTCTTAGTG
34532964 ATTTTAAAATTTATTCTTTTACTTTT
1 ATTTTAAAATTTATTCTTTTACTTTT
*
34532990 ATTTTAAGGAATTTAATTTTTTTACTTTT
1 ATTTTAA--AATTT-ATTCTTTTACTTTT
34533019 AT
1 AT
34533021 GATTTTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 7 0.26
28 5 0.19
29 15 0.56
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (26 bp):
ATTTTAAAATTTATTCTTTTACTTTT
Found at i:34533352 original size:3 final size:3
Alignment explanation
Indices: 34533344--34533371 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
34533334 GGTTTATCAA
34533344 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
34533372 GAAAAAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:34534149 original size:3 final size:3
Alignment explanation
Indices: 34534143--34534185 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
34534133 TTTTACAATC
34534143 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
34534186 AATCTTCTTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:34534370 original size:31 final size:30
Alignment explanation
Indices: 34534333--34534401 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
34534323 ATGTTAGTGC
*
34534333 GTGACTGATTTGTCACTTTTTGATAACGTT-A
1 GTGACTGATTTGTCA-TTTTT-ATAAAGTTGA
* * *
34534364 GTGACTGTTTTGTTATTTTTCTAAAGTTGA
1 GTGACTGATTTGTCATTTTTATAAAGTTGA
34534394 GTGACTGA
1 GTGACTGA
34534402 AATGAAACTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 6 0.19
30 13 0.41
31 13 0.41
ACGTcount: A:0.22, C:0.10, G:0.22, T:0.46
Consensus pattern (30 bp):
GTGACTGATTTGTCATTTTTATAAAGTTGA
Found at i:34537434 original size:3 final size:3
Alignment explanation
Indices: 34537426--34537473 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
34537416 ATCTTCATCT
34537426 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
34537474 TTATTATTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:34566043 original size:43 final size:43
Alignment explanation
Indices: 34565996--34566088 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
34565986 ATCTCCTATT
*
34565996 GATGCCAACAGCCC-AGCCATGGCCTTACACGAAATAACATATC
1 GATGCCAA-AGCCCTAGACATGGCCTTACACGAAATAACATATC
* * * **
34566039 GATGCCAATGCCCTATACATGGCCTTACACGAAGTCTCATATC
1 GATGCCAAAGCCCTAGACATGGCCTTACACGAAATAACATATC
34566082 GATGCCA
1 GATGCCA
34566089 TATCCGAGAT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (43 bp):
GATGCCAAAGCCCTAGACATGGCCTTACACGAAATAACATATC
Found at i:34571943 original size:43 final size:42
Alignment explanation
Indices: 34571835--34571992 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 42
34571825 AGTACCGTAA
* * * * * *
34571835 CAATGCCATATGCCAGATATGGTCTTACATGTAATCTCCTAT
1 CAATGCCATATCCCAGACATGGTCTTACACGAAATCACATAT
* * *
34571877 CAATGCTAATAGCTCAG-CTATGGTCTTACACGAAATCACATAT
1 CAATGC-CATATCCCAGAC-ATGGTCTTACACGAAATCACATAT
* * * *
34571920 CAATGCCAATGTCCCATACATGGTCTTACACGAAGTCTCATAT
1 CAATGCC-ATATCCCAGACATGGTCTTACACGAAATCACATAT
* * *
34571963 CGATGCCATATCCGAGATATGGTCTTACAC
1 CAATGCCATATCCCAGACATGGTCTTACAC
34571993 ATAATCTCGG
Statistics
Matches: 91, Mismatches: 21, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
42 25 0.27
43 65 0.71
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
CAATGCCATATCCCAGACATGGTCTTACACGAAATCACATAT
Found at i:34578158 original size:30 final size:29
Alignment explanation
Indices: 34578118--34578365 Score: 185
Period size: 30 Copynumber: 8.3 Consensus size: 29
34578108 TACCGATCAA
*
34578118 GAAAGGGGATGGTGACGACCATCAAACTAT
1 GAAAAGGGATGGT-ACGACCATCAAACTAT
34578148 GAAAAGGGATGGTGACGACCATCAAACTAT
1 GAAAAGGGATGGT-ACGACCATCAAACTAT
* * * * *
34578178 GAAAAGGGATGGCTTCGGCTATCGATCTAT
1 GAAAAGGGATGG-TACGACCATCAAACTAT
* ** *** *
34578208 G-AAAGGGATGCTTTGGGTATCAATCTAT
1 GAAAAGGGATGGTACGACCATCAAACTAT
* * * *
34578236 GAAAAGGGATGGCTTCGACTATCGATCTAT
1 GAAAAGGGATGG-TACGACCATCAAACTAT
* * * *
34578266 GAAAAGGGATGGCTTCGGCCTTCAAATTAT
1 GAAAAGGGATGG-TACGACCATCAAACTAT
* *
34578296 GAAAAGGGATGGTGATGACCATCGAA-TCAT
1 GAAAAGGGATGGT-ACGACCATCAAACT-AT
* *
34578326 GAAAAGGGATGGTGATGACCATCAAATTAT
1 GAAAAGGGATGGT-ACGACCATCAAACTAT
34578356 GAAAAGGGAT
1 GAAAAGGGAT
34578366 AGCTTTGGCT
Statistics
Matches: 185, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
28 15 0.08
29 20 0.11
30 148 0.80
31 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.29, T:0.23
Consensus pattern (29 bp):
GAAAAGGGATGGTACGACCATCAAACTAT
Found at i:34578208 original size:60 final size:59
Alignment explanation
Indices: 34578144--34578396 Score: 237
Period size: 60 Copynumber: 4.3 Consensus size: 59
34578134 GACCATCAAA
*
34578144 CTATGAAAAGGGATGGTGACGACCATCAAACTATGAAAAGGGATGGCTTCGGCTATCGAT
1 CTATGAAAAGGGATGGT-ACGACCATCAAACTATGAAAAGGGATGGCTTCGACTATCGAT
* ** *** *
34578204 CTATG-AAAGGGATGCTTTGGGTATCAATCTATGAAAAGGGATGGCTTCGACTATCGAT
1 CTATGAAAAGGGATGGTACGACCATCAAACTATGAAAAGGGATGGCTTCGACTATCGAT
* * * * *
34578262 CTATGAAAAGGGATGGCTTCGGCCTTCAAATTATGAAAAGGGATGG-TGAT-GACCATCGAAT
1 CTATGAAAAGGGATGG-TACGACCATCAAACTATGAAAAGGGATGGCT--TCGACTATCG-AT
* * * * * *
34578323 C-ATGAAAAGGGATGGTGATGACCATCAAATTATGAAAAGGGATAGCTTTGGCTATCAAAT
1 CTATGAAAAGGGATGGT-ACGACCATCAAACTATGAAAAGGGATGGCTTCGACTATC-GAT
34578383 -TATGAAAAGGGATG
1 CTATGAAAAGGGATG
34578397 TGCCAATCAT
Statistics
Matches: 159, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
58 40 0.25
59 22 0.14
60 92 0.58
61 5 0.03
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (59 bp):
CTATGAAAAGGGATGGTACGACCATCAAACTATGAAAAGGGATGGCTTCGACTATCGAT
Found at i:34578380 original size:30 final size:29
Alignment explanation
Indices: 34578168--34578396 Score: 171
Period size: 30 Copynumber: 7.7 Consensus size: 29
34578158 GGTGACGACC
* *
34578168 ATCAAACTATGAAAAGGGATGGCTTCGGCT
1 ATCAAATTATGAAAAGGGAT-GCTTTGGCT
* *
34578198 ATC-GATCTATG-AAAGGGATGCTTTGGGT
1 ATCAAAT-TATGAAAAGGGATGCTTTGGCT
* *
34578226 ATC-AATCTATGAAAAGGGATGGCTTCGACT
1 ATCAAAT-TATGAAAAGGGAT-GCTTTGGCT
* *
34578256 ATC-GATCTATGAAAAGGGATGGCTTCGGCCT
1 ATCAAAT-TATGAAAAGGGAT-GCTTTGG-CT
* * * *
34578287 -TCAAATTATGAAAAGGGATGGTGATGACC
1 ATCAAATTATGAAAAGGGATGCT-TTGGCT
* * * * * *
34578316 ATCGAATCATGAAAAGGGATGGTGATGACC
1 ATCAAATTATGAAAAGGGATGCT-TTGGCT
34578346 ATCAAATTATGAAAAGGGATAGCTTTGGCT
1 ATCAAATTATGAAAAGGGAT-GCTTTGGCT
34578376 ATCAAATTATGAAAAGGGATG
1 ATCAAATTATGAAAAGGGATG
34578397 TGCCAATCAT
Statistics
Matches: 167, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
28 17 0.10
29 21 0.13
30 123 0.74
31 6 0.04
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (29 bp):
ATCAAATTATGAAAAGGGATGCTTTGGCT
Found at i:34589893 original size:26 final size:27
Alignment explanation
Indices: 34589826--34590084 Score: 303
Period size: 27 Copynumber: 9.7 Consensus size: 27
34589816 CCTTTAGGTT
*
34589826 GTAAAATTACCAAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
*
34589853 GTAAAATTATCGAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
34589880 GT-AAATTACTGAAATACCCTCGAAGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
34589906 GTAAAA-TATCGAAGTATCCC-CGATGG
1 GTAAAATTACCGAAATA-CCCTCGATGG
* * * * *
34589932 GTAAAATTATCGAAATATCCTCCAAGA
1 GTAAAATTACCGAAATACCCTCGATGG
* * *
34589959 GTAAAATTACAGAAATAACCACGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
*
34589986 GTAAAATTACCAAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGATGG
* *
34590013 GTAAAATTACCGAAATACCCCCTATGG
1 GTAAAATTACCGAAATACCCTCGATGG
*
34590040 GT-AAATTACCAAAATACACCT-GATGG
1 GTAAAATTACCGAAATAC-CCTCGATGG
34590066 GTAAAATTACCGAAATACC
1 GTAAAATTACCGAAATACC
34590085 TTCCAAAGGG
Statistics
Matches: 194, Mismatches: 32, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
26 64 0.33
27 130 0.67
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTCGATGG
Found at i:34589896 original size:53 final size:53
Alignment explanation
Indices: 34589826--34590084 Score: 310
Period size: 53 Copynumber: 4.9 Consensus size: 53
34589816 CCTTTAGGTT
*
34589826 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTATCGAAATACCCTCGATGG
1 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATACCC-CGATGG
** * * *
34589880 GT-AAATTACTGAAATACCCTCGAAGGGTAAAA-TATCGAAGTATCCCCGATGG
1 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATA-CCCCGATGG
* * * * * * * *
34589932 GTAAAATTATCGAAATATCCTCCAAGAGTAAAATTACAGAAATAACCACGATGG
1 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAAT-ACCCCGATGG
*
34589986 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATACCCCCTATGG
1 GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATA-CCCCGATGG
34590040 GT-AAATTACCAAAATACACCT-GATGGGTAAAATTACCGAAATACC
1 GTAAAATTACCAAAATAC-CCTCGATGGGTAAAATTACCGAAATACC
34590085 TTCCAAAGGG
Statistics
Matches: 177, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
52 19 0.11
53 93 0.53
54 64 0.36
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (53 bp):
GTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATACCCCGATGG
Found at i:34615665 original size:64 final size:64
Alignment explanation
Indices: 34615564--34615691 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
34615554 CGACAATTGG
* *
34615564 AAACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTTAATTCCCAAAACTATTGACAA
1 AAACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
* * *
34615628 AAACTCAATCTTAGTCACTTAATCTGAGTTACTTACAATAGTCAATTCCCAAAACTATCGACAA
1 AAACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
34615692 CCTTACCTCA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (64 bp):
AAACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAA
Found at i:34623037 original size:64 final size:64
Alignment explanation
Indices: 34622960--34623084 Score: 232
Period size: 64 Copynumber: 2.0 Consensus size: 64
34622950 TGACAATTGG
34622960 AAACTCAATCTCAGCCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATTGACAA
1 AAACTCAATCTCAGCCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATTGACAA
* *
34623024 AAACTCAATCTCAGTCACTTAATTTGAATTACTTACAACAGTCAATTCCCAAAACTATTGA
1 AAACTCAATCTCAGCCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATTGA
34623085 AACCTTACCT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (64 bp):
AAACTCAATCTCAGCCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATTGACAA
Found at i:34626716 original size:52 final size:52
Alignment explanation
Indices: 34626655--34626755 Score: 193
Period size: 52 Copynumber: 1.9 Consensus size: 52
34626645 CATGCACATA
*
34626655 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCTATTATTG
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTATTG
34626707 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTA
1 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTA
34626756 CTATTCCGTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (52 bp):
TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCCATTATTG
Found at i:34633240 original size:52 final size:52
Alignment explanation
Indices: 34633162--34633262 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
34633152 CATGCACATA
34633162 TTTGAGCCTCAACCGAGCTAGAAATGAGGTCTTAAGCTACTGTCTATTATTG
1 TTTGAGCCTCAACCGAGCTAGAAATGAGGTCTTAAGCTACTGTCTATTATTG
* *
34633214 TTTGAGCTTCAACCGAGCTAGAAATGAGGTCTTAAGCTGCTGTCTATTA
1 TTTGAGCCTCAACCGAGCTAGAAATGAGGTCTTAAGCTACTGTCTATTA
34633263 CTTTTCCTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (52 bp):
TTTGAGCCTCAACCGAGCTAGAAATGAGGTCTTAAGCTACTGTCTATTATTG
Found at i:34654125 original size:44 final size:43
Alignment explanation
Indices: 34654068--34654189 Score: 149
Period size: 44 Copynumber: 2.8 Consensus size: 43
34654058 TCCTTTGTGT
*
34654068 ATTATCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGA
1 ATTA-CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGT-A
* *
34654113 TTTACGTGTAAGACC-CTGACTGGGACAG-TGGCATCGATATGTA
1 ATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTA
* *
34654156 ATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 ATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
34654190 TGTATGAGCT
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 1 0.02
43 28 0.42
44 33 0.50
45 4 0.06
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
ATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTA
Found at i:34661995 original size:132 final size:132
Alignment explanation
Indices: 34661758--34662976 Score: 2132
Period size: 132 Copynumber: 9.2 Consensus size: 132
34661748 TCGTAAATAA
34661758 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
*
34661823 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCGCTATAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
34661888 AG
131 AG
* *
34661890 GTAAAATCCGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGACCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
* *
34661955 CTATTCCATTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
34662020 AG
131 AG
* *
34662022 GTAAAATCCGCCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGACCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
*
34662087 CTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
34662152 AG
131 AG
* *
34662154 GTAAAATCCGCCATCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGACCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
* *
34662219 CTATTCCATTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
34662284 AG
131 AG
* *
34662286 GTAAAATCCGCCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGACCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
*
34662351 CTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
34662416 AG
131 AG
*
34662418 GTAAAATCTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
* *
34662483 CTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
34662548 AG
131 AG
* *
34662550 GTAAAATCCGCCATATTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
*
34662615 CTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
34662680 AG
131 AG
* *
34662682 GTAAAATCTGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
* *
34662747 CTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACTACAGGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
34662812 AG
131 AG
*
34662814 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTTAAT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
* * * * *
34662879 CTATTCCACTGTTGTTCAAGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAGCCACAAGG
66 CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
34662944 AG
131 AG
** *
34662946 GTAAAATCCATCATCTTCGATCTGCTTCACT
1 GTAAAATCCGCCATCTTCGATCTGCTCCACT
34662977 GTCAATGCAG
Statistics
Matches: 1039, Mismatches: 48, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 1039 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
GTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAAT
CTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGG
AG
Found at i:34662624 original size:44 final size:44
Alignment explanation
Indices: 34662569--34662888 Score: 133
Period size: 44 Copynumber: 7.3 Consensus size: 44
34662559 GCCATATTCG
* * *
34662569 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGAAATCTTCA
1 ATCTACTCCACTACTGCTCAGGGAGATAAGATCTGAAATCTTCA
* ** * *
34662613 ATCTATTCCACTGTTGCCCAGGGA-AGT-AGAATTACTG---GCTTCA
1 ATCTACTCCACTACTGCTCAGGGAGA-TAAG-A-T-CTGAAATCTTCA
* * * * * ** *
34662656 ATGTACTCCACTA-TAACCACAGGGAGGTAAAATCTGTCATCTTCG
1 ATCTACTCCACTACT--GCTCAGGGAGATAAGATCTGAAATCTTCA
* *
34662701 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCA
1 ATCTACTCCACTACTGCTCAGGGAGATAAGATCTGAAATCTTCA
* ** * *
34662745 ATCTATTCCACTGTTGCCCAGGGA-AGT-AGAATTACTG---GCTTCA
1 ATCTACTCCACTACTGCTCAGGGAGA-TAAG-A-T-CTGAAATCTTCA
* * * * * ** *
34662788 ATGTACTCCACTA-TAACTACAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTACT-GCT-CAGGGAGATAAGATCTGAAATCTTCA
* * *
34662833 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTTA
1 ATCTACTCCACTACTGCTCAGGGAGATAAGATCTGAAATCTTCA
*
34662877 ATCTATTCCACT
1 ATCTACTCCACT
34662889 GTTGTTCAAG
Statistics
Matches: 195, Mismatches: 57, Indels: 48
0.65 0.19 0.16
Matches are distributed among these distances:
42 7 0.04
43 39 0.20
44 106 0.54
45 36 0.18
46 7 0.04
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTACTGCTCAGGGAGATAAGATCTGAAATCTTCA
Found at i:34671209 original size:24 final size:24
Alignment explanation
Indices: 34671180--34671225 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
34671170 ATCATCTTTT
*
34671180 GCTGCTCACT-CATTTGCTTTTGAA
1 GCTGCTC-CTGCATTTCCTTTTGAA
34671204 GCTGCTCCTGCATTTCCTTTTG
1 GCTGCTCCTGCATTTCCTTTTG
34671226 GGATTGTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.11, C:0.28, G:0.17, T:0.43
Consensus pattern (24 bp):
GCTGCTCCTGCATTTCCTTTTGAA
Found at i:34674173 original size:24 final size:23
Alignment explanation
Indices: 34674156--34674204 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 23
34674146 ATTTTTTCTA
34674156 TTTT-TAAAATATTTATTTTTATT
1 TTTTATAAAAT-TTTATTTTTATT
34674179 TTTTATAAAATTTTATTAATTTATT
1 TTTTATAAAATTTTATT--TTTATT
34674204 T
1 T
34674205 GACTGAATCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 10 0.43
24 6 0.26
25 7 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTATAAAATTTTATTTTTATT
Found at i:34674174 original size:23 final size:23
Alignment explanation
Indices: 34674148--34674195 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
34674138 TTGAACCGAT
*
34674148 TTTTTCTATTTT-TAAAATATTTA
1 TTTTTATATTTTATAAAAT-TTTA
*
34674171 TTTTTATTTTTTATAAAATTTTA
1 TTTTTATATTTTATAAAATTTTA
34674194 TT
1 TT
34674196 AATTTATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTTTATATTTTATAAAATTTTA
Found at i:34680365 original size:7 final size:7
Alignment explanation
Indices: 34680353--34680383 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
34680343 ATTTTGATAG
34680353 TTTAATT
1 TTTAATT
34680360 TTTAATT
1 TTTAATT
34680367 TTTAATT
1 TTTAATT
34680374 TTTAATT
1 TTTAATT
34680381 TTT
1 TTT
34680384 GTTTGGGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTAATT
Found at i:34686862 original size:264 final size:264
Alignment explanation
Indices: 34686371--34686867 Score: 805
Period size: 264 Copynumber: 1.9 Consensus size: 264
34686361 AGTACATACC
* *
34686371 AATTCATATTATACTCAAATTAATTCATACCATTTCATATCATCATCTGCAGATCATCACATTTT
1 AATTCATATCATACTCAAACTAATTCATACCATTTCATATCATCATCTGCAGATCATCACATTTT
* *
34686436 TCACAAGTTATCAACTATTTCATACTTAACTATTCATGAAACAAATAAGTTCATACCTTAAACAA
66 TCACAAGTTATAAACTATTTCATACTTAACTATTCATGAAACAAATAAGTTAATACCTTAAACAA
* *
34686501 GCTAATTGCAAAAATCTATATATAACATTTTAAATTTAAATCGTGAAAGCACAAACCAAAATAGC
131 GCTAATTGCAAAAATCCATATATAACATTTTAAATTTAAATCATGAAAGCACAAACCAAAATAGC
** *
34686566 TACTCATCTATGACCCTCGCCTTTCTTTTATCTCGAGAGGACTCAATGTCTTATTTAGCTAAATA
196 TACTCATCTACAACCCTCGCCTTTCCTTTATCTCGAGAGGACTCAATGTCTTATTTAGCTAAATA
34686631 TGGT
261 TGGT
* *
34686635 AATTCTTATCATACTCAAACTAATTCATACCATTTCATATCATCATCTGCATATCATCACATTTT
1 AATTCATATCATACTCAAACTAATTCATACCATTTCATATCATCATCTGCAGATCATCACATTTT
* * ** * *
34686700 TCACAAGTTATAAACTATTTCTTACTTACCTATTTTTGAAACAAATAAGTTAATGCTTTAAACAA
66 TCACAAGTTATAAACTATTTCATACTTAACTATTCATGAAACAAATAAGTTAATACCTTAAACAA
* *
34686765 GCTAATTGCAACAATCCATATATAATATTTTAAATTTAAATCATGAAAGCACAAACCAAAATAGC
131 GCTAATTGCAAAAATCCATATATAACATTTTAAATTTAAATCATGAAAGCACAAACCAAAATAGC
* *
34686830 TACTCATCTACAACTCTCTCCTTTCCTTTATCTCGAGA
196 TACTCATCTACAACCCTCGCCTTTCCTTTATCTCGAGA
34686868 CGACCCGACA
Statistics
Matches: 212, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
264 212 1.00
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (264 bp):
AATTCATATCATACTCAAACTAATTCATACCATTTCATATCATCATCTGCAGATCATCACATTTT
TCACAAGTTATAAACTATTTCATACTTAACTATTCATGAAACAAATAAGTTAATACCTTAAACAA
GCTAATTGCAAAAATCCATATATAACATTTTAAATTTAAATCATGAAAGCACAAACCAAAATAGC
TACTCATCTACAACCCTCGCCTTTCCTTTATCTCGAGAGGACTCAATGTCTTATTTAGCTAAATA
TGGT
Found at i:34693714 original size:265 final size:265
Alignment explanation
Indices: 34693241--34693769 Score: 945
Period size: 265 Copynumber: 2.0 Consensus size: 265
34693231 AACTCTATTG
34693241 TTTAAATTTTGTGTATTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCCTAAACTATCAAT
1 TTTAAATTTTGTGTATTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCCTAAACTATCAAT
*
34693306 TTAAAATAAGCAAGCAAAAACCCAATTAAAAAATTAAACAAACTTAAAGTCCTTATTACATAGAC
66 TTAAAATAAGCAAGCAAAAACCCAATTAAAAAATTAAACAAACTTAAAGTCCTTACTACATAGAC
34693371 AAAACCCAACATAAACTTACCTGTACAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAGTGTG
131 AAAACCCAACATAAACTTACCTGTACAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAGTGTG
* *
34693436 TAATCTACTATCAGTTAAACAGTATACAACATGCAGTAACAGTCTGGGCCTGAGCCCTATTCAGT
196 TAATCCACTATCAGTTAAACAGTATACAACATGCAGTAACAGTCTGGGCCTGAGCCCTATTCAGA
34693501 AACAA
261 AACAA
* *
34693506 TTTAAATTTTGTGTCTTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCCTAAACTAGT-AG
1 TTTAAATTTTGTGTATTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCCTAAACTA-TCAA
* *
34693570 TTTAAAATAAGTAAGCAAAAACCCAATTAACAAATTAAACAAACTTAAAAG-CCTTACTACATAG
65 TTTAAAATAAGCAAGCAAAAACCCAATTAAAAAATTAAACAAACTT-AAAGTCCTTACTACATAG
34693634 ACAAAACCCAACATAAACTTACCTGTACAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAGTG
129 ACAAAACCCAACATAAACTTACCTGTACAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAGTG
* *
34693699 TGTAATCCACTATCAGTTAAACAGTATACAACATGCAGTAACAGTCTGGGCTTGAGCCTTATTCA
194 TGTAATCCACTATCAGTTAAACAGTATACAACATGCAGTAACAGTCTGGGCCTGAGCCCTATTCA
34693764 GAAACA
259 GAAACA
34693770 GTACAGTGTG
Statistics
Matches: 253, Mismatches: 9, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
265 248 0.98
266 5 0.02
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.29
Consensus pattern (265 bp):
TTTAAATTTTGTGTATTTGAAAACAGTAATTATTTTGAAAGTTTGTCCTCTCCTAAACTATCAAT
TTAAAATAAGCAAGCAAAAACCCAATTAAAAAATTAAACAAACTTAAAGTCCTTACTACATAGAC
AAAACCCAACATAAACTTACCTGTACAGTTAAAAGGAAAAAGTGAGTTTACGAAAAATTAGTGTG
TAATCCACTATCAGTTAAACAGTATACAACATGCAGTAACAGTCTGGGCCTGAGCCCTATTCAGA
AACAA
Found at i:34693797 original size:27 final size:28
Alignment explanation
Indices: 34693767--34693824 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
34693757 TTATTCAGAA
34693767 ACAGT-ACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
*
34693794 ACAGTAATAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTGGGCCTTAGCCCAAT
34693822 ACA
1 ACA
34693825 ATAATAGTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (28 bp):
ACAGTAACAGTGTGGGCCTTAGCCCAAT
Found at i:34693813 original size:28 final size:28
Alignment explanation
Indices: 34693774--34693832 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
34693764 GAAACAGTAC
*
34693774 AGTGTGGGCCTTAGCCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAATAAT
34693802 AGTGTGGGCCTTAGCCCAATACAATAAT
1 AGTGTGGGCCTTAGCCCAATACAATAAT
34693830 AGT
1 AGT
34693833 ATAGCATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAATAAT
Found at i:34693970 original size:26 final size:26
Alignment explanation
Indices: 34693935--34694041 Score: 169
Period size: 26 Copynumber: 4.1 Consensus size: 26
34693925 AACACACCAA
*
34693935 TATCGCAGCAAAGCTACCAGTAATAG
1 TATCGCAGCAAAGCTACCAGTAACAG
* *
34693961 TATCGTAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
* *
34693987 TATCGCAGCAAAGCTGCCAATAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
34694013 TATCGCAGCAAAGCTACCAGTAACAG
1 TATCGCAGCAAAGCTACCAGTAACAG
34694039 TAT
1 TAT
34694042 ACTTCCTTCT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTACCAGTAACAG
Found at i:34694237 original size:27 final size:27
Alignment explanation
Indices: 34694206--34694319 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 27
34694196 GGTATAACAA
* *
34694206 TCATTTAACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
* *
34694233 CCATTTTACCCTATAGAGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
* * *
34694260 TCATTTTATCCTATATGGGTATTTTGG
1 TCATTTTACCCTATAGGGGTATTTCGG
* *
34694287 TCATTTTACCTTATAGGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGG
34694314 TCATTT
1 TCATTT
34694320 ATTAACCTTT
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGG
Found at i:34702043 original size:27 final size:27
Alignment explanation
Indices: 34702011--34702153 Score: 164
Period size: 27 Copynumber: 5.3 Consensus size: 27
34702001 GGGGTATAAT
*
34702011 AGTCATTTAACCCTATAGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTC
* *
34702038 AATCATCTTACCCTAT-GGGGATATTTC
1 AGTCATTTTACCCTATAGGGG-TATTTC
**
34702065 AACCATTTTACCCTAT-GGAGGTATTTC
1 AGTCATTTTACCCTATAGG-GGTATTTC
* * *
34702092 GGTCATTTTACCCTATATGGGTATTTT
1 AGTCATTTTACCCTATAGGGGTATTTC
* *
34702119 GGTCATTTTACCTTATAGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTC
34702146 AGTCATTT
1 AGTCATTT
34702154 ATTGACCTCT
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 4 0.04
27 92 0.93
28 3 0.03
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.41
Consensus pattern (27 bp):
AGTCATTTTACCCTATAGGGGTATTTC
Found at i:34704266 original size:35 final size:35
Alignment explanation
Indices: 34704220--34704289 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
34704210 CTTCAAAAAG
34704220 TTGATTTTGCGCTATTCATATGCCCTTGCCAAATT
1 TTGATTTTGCGCTATTCATATGCCCTTGCCAAATT
34704255 TTGATTTTGCGCTATTCATATGCCCTTGCCAAATT
1 TTGATTTTGCGCTATTCATATGCCCTTGCCAAATT
34704290 GGGCTTCTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (35 bp):
TTGATTTTGCGCTATTCATATGCCCTTGCCAAATT
Found at i:34713077 original size:71 final size:71
Alignment explanation
Indices: 34713002--34713159 Score: 174
Period size: 71 Copynumber: 2.2 Consensus size: 71
34712992 GTTTGAATTA
* * *
34713002 GATGTCGTGACATGGGCTTCTGGATGTCGTGACATTAATGGTTGTATGCTCCCCC-CTTTAGTTC
1 GATGTCGCGACATGGGCTTATGGATGTCGTGACATTAATGGATGTATGCTCCCCCTC-TTAGTTC
*
34713066 GAAGTTG
65 AAAGTTG
* * * * * * * *
34713073 GATGTTGCGACTTTGGCTTATGGGTTTCGTGGCATTGATGGATGTATGCTCCCCCTCTTGGTTCA
1 GATGTCGCGACATGGGCTTATGGATGTCGTGACATTAATGGATGTATGCTCCCCCTCTTAGTTCA
34713138 AAGTTG
66 AAGTTG
* *
34713144 GATGTCACAACATGGG
1 GATGTCGCGACATGGG
34713160 ATGGTGGTTT
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
71 68 0.99
72 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.29, T:0.35
Consensus pattern (71 bp):
GATGTCGCGACATGGGCTTATGGATGTCGTGACATTAATGGATGTATGCTCCCCCTCTTAGTTCA
AAGTTG
Found at i:34717222 original size:26 final size:25
Alignment explanation
Indices: 34717161--34717223 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
34717151 AATAAAGAAG
34717161 AAAAGAGAATGAGAAGGGGAAAAAA
1 AAAAGAGAATGAGAAGGGGAAAAAA
*
34717186 ATAGAATAGAA-GAGAAGGGGAAAGGAAA
1 A-A-AAGAGAATGAGAAGGGGAAA--AAA
34717214 AAAAGAGAAT
1 AAAAGAGAAT
34717224 AAAAGAGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
25 1 0.03
26 19 0.61
27 7 0.23
28 4 0.13
ACGTcount: A:0.62, C:0.00, G:0.32, T:0.06
Consensus pattern (25 bp):
AAAAGAGAATGAGAAGGGGAAAAAA
Found at i:34720273 original size:28 final size:28
Alignment explanation
Indices: 34720235--34720315 Score: 135
Period size: 28 Copynumber: 2.9 Consensus size: 28
34720225 ATATACATAC
34720235 AAAATACAAACTTTGTAATATAAATGCA
1 AAAATACAAACTTTGTAATATAAATGCA
* *
34720263 AAAATATAAACTTTGAAATATAAATGCA
1 AAAATACAAACTTTGTAATATAAATGCA
*
34720291 AAAATACAAACGTTGTAATATAAAT
1 AAAATACAAACTTTGTAATATAAAT
34720316 TAGATTCATT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.56, C:0.09, G:0.07, T:0.28
Consensus pattern (28 bp):
AAAATACAAACTTTGTAATATAAATGCA
Found at i:34723307 original size:30 final size:31
Alignment explanation
Indices: 34723273--34723330 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
34723263 GAACCATACT
34723273 TTGGTGTC-ACTTTCCCATGGGCACCACTCA
1 TTGGTGTCGACTTTCCCATGGGCACCACTCA
* *
34723303 TTGGTGTCGCCTTTCTCATGGGCACCAC
1 TTGGTGTCGACTTTCCCATGGGCACCAC
34723331 CACCAAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.14, C:0.33, G:0.22, T:0.31
Consensus pattern (31 bp):
TTGGTGTCGACTTTCCCATGGGCACCACTCA
Found at i:34723871 original size:25 final size:25
Alignment explanation
Indices: 34723821--34723874 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
34723811 TGTAGTGGCA
*
34723821 AGGTAGCGACACAGGTGTGGCTAGG
1 AGGTAGCGACACAGGTGTGGATAGG
* *
34723846 AGGTGGCGTCACAGGTGT-GATAAGG
1 AGGTAGCGACACAGGTGTGGAT-AGG
34723871 AGGT
1 AGGT
34723875 CAGAGGTTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.24, C:0.13, G:0.44, T:0.19
Consensus pattern (25 bp):
AGGTAGCGACACAGGTGTGGATAGG
Found at i:34725403 original size:27 final size:26
Alignment explanation
Indices: 34725371--34725424 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
34725361 ATAATCGTAA
* *
34725371 TGCCCTTAGAGGGTAAATGACTATTT
1 TGCCCCTAGAGGGTAAATGACTAATT
* *
34725397 TGCCCCTCGTGGGTAAATGACTAATT
1 TGCCCCTAGAGGGTAAATGACTAATT
34725423 TG
1 TG
34725425 TGCTATGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (26 bp):
TGCCCCTAGAGGGTAAATGACTAATT
Found at i:34727553 original size:26 final size:25
Alignment explanation
Indices: 34727523--34727573 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
34727513 ACCACATCAA
*
34727523 GTTTTTCACTAACCGCAATTAAAAG
1 GTTTTTTACTAACCGCAATTAAAAG
34727548 GTTTTTTACTAACCGCAATTAAAAG
1 GTTTTTTACTAACCGCAATTAAAAG
34727573 G
1 G
34727574 CACCGCCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (25 bp):
GTTTTTTACTAACCGCAATTAAAAG
Found at i:34734056 original size:37 final size:37
Alignment explanation
Indices: 34734013--34734121 Score: 125
Period size: 35 Copynumber: 3.0 Consensus size: 37
34734003 ACGCCACTCA
*
34734013 TCTTTCAATTAACATCCTTCCACAACACCGAAACTTC
1 TCTTTCAATTAACATCCTTCCACAACACCGATACTTC
* * *
34734050 TCTTTCAATTAAAAT-CTTGCCACAACGCTGATAC-T-
1 TCTTTCAATTAACATCCTT-CCACAACACCGATACTTC
* **
34734085 TCTTTCAATTAACGTCCCGCCACAACACCGATACTTC
1 TCTTTCAATTAACATCCTTCCACAACACCGATACTTC
34734122 ATGTAACACC
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
35 26 0.45
36 6 0.10
37 26 0.45
ACGTcount: A:0.30, C:0.33, G:0.06, T:0.30
Consensus pattern (37 bp):
TCTTTCAATTAACATCCTTCCACAACACCGATACTTC
Found at i:34735178 original size:18 final size:20
Alignment explanation
Indices: 34735131--34735180 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
34735121 AAGGAAGGAT
34735131 AATAATTTAGAAGATAAATTA
1 AATAATTTAGAAGAT-AATTA
*
34735152 AATAATTTAGGAGAT-ATTA
1 AATAATTTAGAAGATAATTA
34735171 AA-AATTTAGA
1 AATAATTTAGA
34735181 CTTAAACCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 7 0.26
19 6 0.22
21 14 0.52
ACGTcount: A:0.54, C:0.00, G:0.12, T:0.34
Consensus pattern (20 bp):
AATAATTTAGAAGATAATTA
Found at i:34746437 original size:21 final size:21
Alignment explanation
Indices: 34746412--34746465 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
34746402 ATATTATTGT
*
34746412 AAAAATAAAAGAATTTCCTGA
1 AAAAATAGAAGAATTTCCTGA
34746433 AAAAATAGAAGAATTTCCTGA
1 AAAAATAGAAGAATTTCCTGA
34746454 AAAAATAGAAGA
1 AAAAATAGAAGA
34746466 TAAAAAACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.59, C:0.07, G:0.13, T:0.20
Consensus pattern (21 bp):
AAAAATAGAAGAATTTCCTGA
Found at i:34753958 original size:23 final size:24
Alignment explanation
Indices: 34753907--34753957 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
34753897 AGTCAATTCT
* *
34753907 TTTTTTTTTCAAATTTAAAAATGG
1 TTTTCTTTTCAAATTTAAAAATAG
34753931 TTTTCTTTTCAAATTTAAAAATAG
1 TTTTCTTTTCAAATTTAAAAATAG
34753955 TTT
1 TTT
34753958 CGACAGGTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TTTTCTTTTCAAATTTAAAAATAG
Found at i:34757625 original size:7 final size:7
Alignment explanation
Indices: 34757594--34757755 Score: 60
Period size: 7 Copynumber: 22.7 Consensus size: 7
34757584 CTCTATCCTT
34757594 TAAACCC
1 TAAACCC
* *
34757601 TAAATCA
1 TAAACCC
* *
34757608 TAAAACA
1 TAAACCC
34757615 TAAACCC
1 TAAACCC
34757622 TAAACCC
1 TAAACCC
*
34757629 TTAAACCT
1 -TAAACCC
34757637 TAAA-CC
1 TAAACCC
*
34757643 TCAACCC
1 TAAACCC
*
34757650 TTAAACCA
1 -TAAACCC
**
34757658 TAAACAA
1 TAAACCC
*
34757665 TAATCCC
1 TAAACCC
34757672 TAAACCC
1 TAAACCC
* * *
34757679 ATGATCCA
1 -TAAACCC
*
34757687 TAAACCT
1 TAAACCC
*
34757694 TAAA--A
1 TAAACCC
*
34757699 TAGTAACTCT
1 TA--AAC-CC
*
34757709 TAAACCT
1 TAAACCC
*
34757716 TAAACCT
1 TAAACCC
*
34757723 TAAACCA
1 TAAACCC
*
34757730 TATACCC
1 TAAACCC
*
34757737 TAAACCA
1 TAAACCC
34757744 TAAACCC
1 TAAACCC
34757751 TAAAC
1 TAAAC
34757756 TATAATGCTA
Statistics
Matches: 117, Mismatches: 29, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
5 2 0.02
6 4 0.03
7 91 0.78
8 18 0.15
10 2 0.02
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.22
Consensus pattern (7 bp):
TAAACCC
Found at i:34757634 original size:21 final size:22
Alignment explanation
Indices: 34757595--34757755 Score: 95
Period size: 21 Copynumber: 7.5 Consensus size: 22
34757585 TCTATCCTTT
* * *
34757595 AAACCCTAAA-TCATAAAACAT
1 AAACCCTAAACCCTTAAACCAT
*
34757616 AAACCCTAAACCCTTAAACCTT
1 AAACCCTAAACCCTTAAACCAT
*
34757638 AAA-CCTCAACCCTTAAACCAT
1 AAACCCTAAACCCTTAAACCAT
** *
34757659 AAACAATAATCCC-TAAACCCAT
1 AAACCCTAAACCCTTAAA-CCAT
* * *
34757681 GATCCATAAA-CCTTAAA--AT
1 AAACCCTAAACCCTTAAACCAT
* *
34757700 AGTAACTCTTAAA-CCTTAAACCTT
1 A--AAC-CCTAAACCCTTAAACCAT
* *
34757724 AAACCATATACCC-TAAACCAT
1 AAACCCTAAACCCTTAAACCAT
34757745 AAACCCTAAAC
1 AAACCCTAAAC
34757756 TATAATGCTA
Statistics
Matches: 107, Mismatches: 23, Indels: 20
0.71 0.15 0.13
Matches are distributed among these distances:
19 2 0.02
21 57 0.53
22 46 0.43
24 2 0.02
ACGTcount: A:0.47, C:0.30, G:0.01, T:0.22
Consensus pattern (22 bp):
AAACCCTAAACCCTTAAACCAT
Found at i:34757726 original size:14 final size:14
Alignment explanation
Indices: 34757709--34757760 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
34757699 TAGTAACTCT
* *
34757709 TAAACCTTAAACCT
1 TAAACCATAAACCC
*
34757723 TAAACCATATACCC
1 TAAACCATAAACCC
34757737 TAAACCATAAACCC
1 TAAACCATAAACCC
*
34757751 TAAACTATAA
1 TAAACCATAA
34757761 TGCTAATTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:34758285 original size:41 final size:40
Alignment explanation
Indices: 34758200--34758364 Score: 149
Period size: 40 Copynumber: 4.1 Consensus size: 40
34758190 TTGACGGTGC
* * * *
34758200 TTTTCAAAAAATCACAGTTAATGCTCGATCTATAGCGGCG
1 TTTTCAAAAAGTCACCGCTAATGCTCGATCTGTAGCGGCG
* *
34758240 TTTTCCAAAAGTCACCGCTAATGCTCGATCTGTAGCTGCG
1 TTTTCAAAAAGTCACCGCTAATGCTCGATCTGTAGCGGCG
* * * *
34758280 TTTTTCAAAAAG-CGCCGCTAATGATCGATCTGTAGTGGCAT
1 -TTTTCAAAAAGTCACCGCTAATGCTCGATCTGTAGCGGC-G
* * *
34758321 TTTTCAAAAAAAGT---CGTTAATGTTTGATCTGTAGCGGCG
1 TTTTC--AAAAAGTCACCGCTAATGCTCGATCTGTAGCGGCG
34758360 TTTTC
1 TTTTC
34758365 TATCCAAACG
Statistics
Matches: 103, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
39 5 0.05
40 82 0.80
41 10 0.10
42 6 0.06
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (40 bp):
TTTTCAAAAAGTCACCGCTAATGCTCGATCTGTAGCGGCG
Found at i:34765398 original size:27 final size:27
Alignment explanation
Indices: 34765327--34765545 Score: 135
Period size: 27 Copynumber: 8.3 Consensus size: 27
34765317 AAGTGCTTTC
* * *
34765327 CCCATATTAGATAGTCCTCATGGACCT
1 CCCACATTAGATAGTCCTGATGGACTT
* * *
34765354 -CCA-A-AAGATAGTCCTTATGGACCT
1 CCCACATTAGATAGTCCTGATGGACTT
* *
34765378 CCCACATTAGATAGTCTTTATAGG-CTT
1 CCCACATTAGATAGTCCTGAT-GGACTT
* * *
34765405 TCCACA-TATGATAATCCTAATGGACTT
1 CCCACATTA-GATAGTCCTGATGGACTT
* * * *
34765432 TCCACGTTAGGTAGTCCTGATGAACTT
1 CCCACATTAGATAGTCCTGATGGACTT
* *
34765459 CCCACATAAGATAGTCTTGATGGACTT
1 CCCACATTAGATAGTCCTGATGGACTT
* * *
34765486 TCCACATTAGATAATACTGA-GGACTT
1 CCCACATTAGATAGTCCTGATGGACTT
* * * * * * *
34765512 TCTACATTAGACAGTTCTAACGAACTT
1 CCCACATTAGATAGTCCTGATGGACTT
34765539 CCCACAT
1 CCCACAT
34765546 ATACGGTAAT
Statistics
Matches: 151, Mismatches: 33, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
24 18 0.12
25 4 0.03
26 29 0.19
27 96 0.64
28 4 0.03
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (27 bp):
CCCACATTAGATAGTCCTGATGGACTT
Found at i:34765471 original size:81 final size:80
Alignment explanation
Indices: 34765359--34765546 Score: 209
Period size: 81 Copynumber: 2.3 Consensus size: 80
34765349 GACCTCCAAA
* * * * * *
34765359 AGATAGTCCTTATGGACCTCCCACATTAGATAGTCTTTATAGG-CTTTCCACA-TATGATAATCC
1 AGATAGTCCTAATGAACTTCCCACATAAGATAGTCTTGAT-GGACTTTCCACATTA-GATAATAC
*
34765422 TAATGGACTTTCCACGTT
64 TAA-GGACTTTCCACATT
* * *
34765440 AGGTAGTCCTGATGAACTTCCCACATAAGATAGTCTTGATGGACTTTCCACATTAGATAATACTG
1 AGATAGTCCTAATGAACTTCCCACATAAGATAGTCTTGATGGACTTTCCACATTAGATAATACTA
*
34765505 AGGACTTTCTACATT
66 AGGACTTTCCACATT
* * *
34765520 AGACAGTTCTAACGAACTTCCCACATA
1 AGATAGTCCTAATGAACTTCCCACATA
34765547 TACGGTAATG
Statistics
Matches: 90, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
80 36 0.40
81 52 0.58
82 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (80 bp):
AGATAGTCCTAATGAACTTCCCACATAAGATAGTCTTGATGGACTTTCCACATTAGATAATACTA
AGGACTTTCCACATT
Found at i:34769244 original size:449 final size:448
Alignment explanation
Indices: 34768286--34769607 Score: 2349
Period size: 449 Copynumber: 2.9 Consensus size: 448
34768276 GTTTAAGTTA
* * *
34768286 AAGTTAAAGTTAATTTAGTATCAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34768351 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTGATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34768416 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34768481 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTTGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34768546 ATTGTAGATACAATTTTTTTATTGTTAATAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
34768611 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34768676 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTG
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTG
* *
34768734 AAGTTCAAGTTAATTTAGTATTAGCCTCCATTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34768799 TGTAAAAACTATATTACAACCAGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
** *
34768864 TTGCAATATTTACACTCTAAATGTTAGTATGTCCGGAGGAGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34768929 AGGAGGCAATGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34768994 ATTGTAGATACAATTTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
261 ATTGTAGATACAA-TTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
* * * *
34769059 TCTTGCAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGGGAGAATAATCTGTAGGAATCG
325 ACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
* *
34769124 TCAATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTG
* *
34769183 AAGTTAAAGTTAATTTAGAATTAGCCTCCCTTGGGTTTGATCCTTCGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34769248 TGTAAAAACTATATTACAACCTGACTCATCA-ACTTGCAGACACCACCTCAATTCCATTCATTTA
66 TGTAAAAACTATATTACAACCTGACTCGT-ATACTTGCAGACACCACCTCAATTCCATTCATTTA
* * *
34769312 GTTGCAATATTTACGCTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCC
130 GTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCC
34769377 GAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
195 GAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
*
34769442 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGG
260 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
*
34769507 ACTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
325 ACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
*
34769572 TCGATAGCCATAGCAGATGCAAAACCAATCACCTGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34769608 TGCAAGCAAT
Statistics
Matches: 831, Mismatches: 41, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
448 405 0.49
449 425 0.51
450 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (448 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTG
Found at i:34776664 original size:447 final size:447
Alignment explanation
Indices: 34775830--34776696 Score: 1538
Period size: 447 Copynumber: 1.9 Consensus size: 447
34775820 GTTTAAGTTA
*
34775830 AAGTTAAAGTTAACTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAACTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34775895 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTGATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34775960 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATAGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATAGCCG
* *
34776025 AGGAGGCAACGCTAGTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34776090 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTAGGA
* * * *
34776155 CTTGCAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTGGAAGAATAATCTGTAGGAATCGTC
326 CTCGCAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAAGAATAATCTGTAGGAATCGTC
34776220 AATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
391 AATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
* *
34776277 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
1 AAGTTAAAGTTAACTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34776342 TGTAAAAACTATATTACAACCTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34776407 TTTCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATAGCCG
34776472 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34776537 ATTGTAGATACAATTTTTTTATTGTTACTAACATC-TTTATTTTCTTTTTAGTTTCAGTGTAGGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTAGGA
*
34776601 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGCAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGA-AGAATAATCTGTAGGAATCGT
*
34776666 CACTAGCCATAGCAGATGCAAAACCAATCAC
390 CAATAGCCATAGCAGATGCAAAACCAATCAC
34776697 CTGTTGCAAG
Statistics
Matches: 399, Mismatches: 20, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
446 64 0.16
447 335 0.84
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (447 bp):
AAGTTAAAGTTAACTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATAGCCG
AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTAGGA
CTCGCAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAAGAATAATCTGTAGGAATCGTC
AATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
Found at i:34778620 original size:814 final size:814
Alignment explanation
Indices: 34777540--34783738 Score: 5449
Period size: 814 Copynumber: 7.5 Consensus size: 814
34777530 ATATTCGTTT
*
34777540 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
* *
34777605 TGTAAAAACTATATTACAACCTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTAC
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34777670 TTTCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
*
34777735 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTGTAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34777800 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
*
34777865 TCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
326 TCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGTC
*
34777930 AATAGCCATAGCAGATGCAAAACCAATCATCTGTTGCAAGCAATCTACCATGCGATAAATCGTTG
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAAATCGTTG
34777995 TTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCAATTACCAGCAAACCC
456 TTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCAATTACCAGCAAACCC
34778060 TTCGATGGCATTAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
521 TTCGATGGCATTAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
*
34778125 GTAGCATTACAAGGCCAACCATTATGGAAAATTATTTTGAAATAAAATAGACCATGATCTAAATG
586 GTAGCATTACAAGGCCAACCATTATGGAAAATTATTTTGAAATAAAATCGACCATGATCTAAATG
*
34778190 ATCCAAAATAATC-TGCAATTCAGAGACACCATGACGGATGTCCCAAATCAACATCTAAAACGGG
651 ATCCAAAATAATCAT-CAATTCAGAGA-ACCATGACGGATGTCACAAATCAACATCTAAAACGGG
*
34778254 TCCTTCAATTTTGGGATACATT-TAAATATAACGGGGTCATTGATGAAGCTATTAATCTTCGGTT
714 TCCTTCAATTTTGTGATACATTCTAAATATAACGGGGTCATTGATGAAGCTATTAATCTTCGGTT
34778318 GTTTCCCTTATCCTTGATCGATATTCATTTAAGTTA
779 GTTTCCCTTATCCTTGATCGATATTCATTTAAGTTA
34778354 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
34778419 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34778484 TTTCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
*
34778549 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTGTAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34778614 ATTGTAGATACAATTTTTTTGTTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
* *
34778679 TCGTAGTACTGGAACAATTATAGAGTGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGTC
326 TCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGTC
* * *
34778744 AATAGCCATAGCAGATGCAAAACTATTCACCTGTTGCAAGCAATCTACCATGCGATAACTCGTTG
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAAATCGTTG
* * *
34778809 TTTGATGGGGAAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACCC
456 TTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCAATTACCAGCAAACCC
*
34778874 TTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
521 TTCGATGGCATTAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
* *
34778939 GTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGATG
586 GTAGCATTACAAGGCCAACCATTATGGAAAATTATTTTGAAATAAAATCGACCATGATCTAAATG
* *
34779004 ATCCAAAATAATCATCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGGA
651 ATCCAAAATAATCATCAATTCAGA-GAACCATGACGGATGTCACAAATCAACATCTAAAACGGGT
* *
34779069 CCTTCAATTTTGTGATACATTCT-AATATAACGGGGTTATTGATGAAGCTATTCATCTTCGGTTG
715 CCTTCAATTTTGTGATACATTCTAAATATAACGGGGTCATTGATGAAGCTATTAATCTTCGGTTG
*
34779133 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
780 TTTCCCTTATCCTTGATCGATATTCATTTAAGTTA
* * *
34779168 AAGTTAAAGTTAACTTAATATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
34779233 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34779298 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
* *
34779363 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGTAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* * *
34779428 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATC-TTTATTTTCTTTTTAGTTTCAGTGTAGGA
* ** * * *
34779493 CTTGTAGTAGTGGAACTGTTATAGAGCGAGTCGCTGATCTAGAAAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGT
* * ** * * *
34779558 CAATAGCCATAGCAGATGCAAAACCAATCACTTG-TACTAATTAGATCTA-TATTCGTTTAAGTT
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGC-AAGCA-ATCTACCATGCG-ATAA---
** * * * ** ** ** ** * *** *
34779621 AAAGTTAATTTAGTATTAGCCT-CCCTTG-GGTT-TGATCCTTGGA-GTACTCACCTA-CTTTGT
449 ATCGTT-GTTT-G-ATGAG-GTAAAC--GAACTTAACATCC-AAGACATAC-CACC-ACCACCGC
** * ** * * * * ***
34779681 TGTAAAAAGTATATTACAACC-T-GACTCGTCTACTT-GCAGA-C-ACCACCTCAATTCCATTCA
505 AATTACCAGCA-A--AC--CCTTCGA-T-GGC-A-TTAGAAGAGCGA-AACCT-AA-GGGATT-A
* * ** * * * * ** ** *
34779741 TTTAGTTTCAATATTTACACTCTGGATGTTAGTATGTC-CGG-AGGCGGT-CAAGTGATTGGAGC
557 ---CG---CACTA-CCA-AATCTGG-TGAT-G-GT-TCAAGGTA-GCATTACAAG-G---CCAAC
* *** ** * ** ** ** * * * **
34779803 CATTGCCGA-GGAGGCAACGCTACT-AAATTGATTTTAACTTTTGAGTTTTATAGGAT--AATTT
605 CATT----ATGGA--AAATTATTTTGAAA-TAAAATCGAC-CATGA--TCTAAATGATCCAAAAT
* * * * ***** *** ***
34779864 GGAAATTTATAAATTGTAGATAGAA--TTTTTTTATTGTCAC---T-AACATCTTTTA-TTTTCT
660 ---AA-TCATCAATT-CAG--AGAACCATGACGGA-TGTCACAAATCAACATCTAAAACGGGTC-
* * * ** * * *
34779922 TTTTAGTTTAAGTGTAGGACT-CGTAGTAGTGGAACAATTATAGA-GCGAGTCACTGATCTAGAG
716 CTTCAATTT---TGT--GA-TAC--A-T--T-CTA-AA-TATA-ACG-GGGTCATTGAT-GA-AG
** * * * ** * * * * * ** * *
34779985 AGAATAATCTGTAGGAATCG--T-CAATAGCCAT-AGC-AGATGCA-AAACCAATCA
763 CTATTAATCT-TCGG--TTGTTTCCCTTATCCTTGATCGATATTCATTTA--AGTTA
** * * * ** * ** * * * ** **
34780036 CCTGTTGCAAG-CAATCTACCA-T-GCGATAACTCGTTGTTTGA----T-GAGGA-AAACGAACT
1 -AAGTT-AAAGTTAATTTAGTATTAGC-CTTCCTTG-GGTTTGATCCTTGGAGTACTCACCTACT
*** ** * ** * * * * * * **
34780092 TAACAT-CCAAGACT-TACCACCACC--AC-CGCA-A-TTACCAGCAAACC-CTTCGATGGCA-T
62 T-TGTTGTAAAAACTATATTACAACCTGACTCGTATACTT-GCAG-ACACCACCTCAATTCCATT
* ** * * ** * * * ** * *
34780148 GA-GAAG-AGCGA-A---AC-CTAAGG--GATTACGCACT-ACC-AAATCTGGT-GA-TGGTTCA
124 CATTTAGTTGCAATATTTACACTCTGGATG-TTA-GTA-TGTCCGGAGGC-GGTCAAGTGATT--
* * * * * * * *
34780200 AGGTAG-CATT-AC-A--AGGCCAAC-CATTA-TGGAAAATAATTTTGAAATAAAATCGACCATG
183 -GG-AGCCATTGCCGAGGAGG-CAACGC--TACT--AAATTGATTTT-AACT---TTTGA--GTT
* * * *** * * * ***** **
34780258 ATCTA-GATGA-TCCAAAATAATCATCAATTCAG-AGGA-ACCA-TGACGGA-TGACACAAATCA
235 TTATAGGATAATTTGGAAAT--TTATAAATT--GTA-GATACAATTTTTTTATTGTTAC---T-A
** ** * * * * ** ** *
34780317 ACATCTAAAACGGGACCTTCAATTTTGT-GATACATTCTAATA-TAACGGGGTTATTGATGAAGC
291 ACATCT------TTATTTTC--TTTT-TAGTTTCAGTGTAGGACT--CGTAG-TAGTG--GAA-C
* * * ** * ** * ** * * * * *
34780380 TATTCATCTTCG-GTTGTTTCCCTTATCCTTGATCG-ATATTCGTTTAAGTTAA-AGTTAA-AG-
341 AATT-A---TAGAG-CGAGTCACGGAT-CTAGAGAGAATAATC-TGT-AG-GAATCGTCAATAGC
* * ** * * * * * ** * * *
34780440 -TTAACTTA-GTATTAGCC-TTC-CTTGGGTTTGATCCTTGGAGTACTCACC-TAC--T---TCG
397 CATAGCAGATGCA-AAACCAATCACCT--G-TTG---CAAGCAAT-CT-ACCATGCGATAAATCG
*** ** * * * * * **
34780495 TTGTAAAAACT-ATATTACAACCTG-ACTCGTATACTTGC-AGACACCACCTCAATTCCATTG-A
453 TTGT-TTGA-TGA-GGTA-AA-C-GAACT--TA-ACATCCAAGACA-TACCACCA--CCACCGCA
* *** * * * ** ** * * * **
34780556 TTTAGTTGCAATATTTACACTCTGGAT-G--TTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGC
506 ATTACCAGC-A-A---ACCCT-TCGATGGCATTAG-AAGAGC-GAAAC-CT-AAGGGATT-ACGC
* * * * * ** ** *
34780618 -CATAGCCGAGGAGGCAACGCTAGTAAATTGATTTTAATTTTTGAGTTTTA-TAGG--ATA--AT
560 AC-TA-CC----A---AA-TCTGGT-GA-TG-GTTCAA--GGT-AGCATTACAAGGCCA-ACCAT
* * * * ***** * * **** ** *
34780677 T-TGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACT-AA-CATCTTTTATTTTCCTT
608 TATGGAAAATTAT--TTTG-AAATA-AAATCGACCA-TGAT-CTAAATGATCCAAAATAAT-C-A
* * * * * * ** * * * *
34780739 TTAGTTTCAGTG---TATGTC--TTG-CAGTAGTGGAACAGT-TATAGAGCGAGTCACTGATC--
665 TCA-ATTCAGAGAACCATGACGGATGTCACAAAT-CAACA-TCTA-A-AACGGGTC-CT--TCAA
*** * * * ** * * * * * * **
34780795 TAGAGAGAATA-ATCTGTAGGAATCGTCAA--TAGCCATAGCA-GATGC-A-AAACCAATCACTT
722 TTTTGTG-ATACAT-TCTA--AAT-AT-AACGGGGTCATTG-ATGAAGCTATTAATC-TTCGGTT
* * * * *
34780854 G--T-ACTAAT--TAGATC--TA-T-A-TT-CGTTT
779 GTTTCCCTTATCCTTGATCGATATTCATTTAAGTTA
*
34780879 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
*
34780944 TGTAAAAACTATATTACAACCTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34781009 TTTCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
34781074 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34781139 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
34781204 TCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGTC
326 TCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGTC
* *
34781269 ACTAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACTCGTTG
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAAATCGTTG
* *
34781334 TTTGATGAGG-AAACGAACTTAACTTCCAAGACTTACCACCACCACCGCAATTACCAGCAAACCC
456 TTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCAATTACCAGCAAACCC
*
34781398 TTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
521 TTCGATGGCATTAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
* * *
34781463 GTAGCATTACAAGGCCAACCATAATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGATG
586 GTAGCATTACAAGGCCAACCATTATGGAAAATTATTTTGAAATAAAATCGACCATGATCTAAATG
* * *
34781528 ATCCAAAATAATCATCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAATGGGA
651 ATCCAAAATAATCATCAATTCAGA-GAACCATGACGGATGTCACAAATCAACATCTAAAACGGGT
* *
34781593 CCTTCAATTTTGTGATACATTCT-AATATAACGGGGTTATTGATGAAGCTATTCATCTTCGGTTG
715 CCTTCAATTTTGTGATACATTCTAAATATAACGGGGTCATTGATGAAGCTATTAATCTTCGGTTG
*
34781657 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
780 TTTCCCTTATCCTTGATCGATATTCATTTAAGTTA
* * *
34781692 AAGTTAAAGTTAACTTAGTATTAGCCTTCCTTAGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
*
34781757 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTAAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * * *
34781822 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCA
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
* *
34781887 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34781952 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
*
34782017 TCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATTTGTAGGAATCGTC
326 TCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGTC
* *
34782082 ACTAGCCATAGCAGATGCAAAACCAATCATCTGTTGCAAGCAATCTACCATGCGATAAATCGTTG
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAAATCGTTG
34782147 TTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCAATTACCAGCAAACCC
456 TTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCAATTACCAGCAAACCC
34782212 TTCGATGGCATTAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
521 TTCGATGGCATTAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
*
34782277 GTAGCATTACAAGGCCAACCATTATGGAAAATTATTTTGAAATAAAATAGACCATGATCTAAATG
586 GTAGCATTACAAGGCCAACCATTATGGAAAATTATTTTGAAATAAAATCGACCATGATCTAAATG
* *
34782342 ATCCAAAATAATC-TGCAATTCAGAGACACCATGACGGATGTCCCAAATCAACATCTAAAACGAG
651 ATCCAAAATAATCAT-CAATTCAGAGA-ACCATGACGGATGTCACAAATCAACATCTAAAACGGG
*
34782406 TCCTTCAATTTTGGGATACATT-TAAATATAACGGGGTCATTGATGAAGCTATTAATCTTCGGTT
714 TCCTTCAATTTTGTGATACATTCTAAATATAACGGGGTCATTGATGAAGCTATTAATCTTCGGTT
34782470 GTTTCCCTTATCCTTGATCGATATTCATTTAAGTTA
779 GTTTCCCTTATCCTTGATCGATATTCATTTAAGTTA
34782506 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
*
34782571 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATACATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34782636 TTTCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCA
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
* *
34782701 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTGTAGGATAATTTAGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34782766 ATTGTAGATACAATTTTTTTGTTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
*
34782831 TCGTAGTAGTGGAACAATTATAGAGTGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGTC
326 TCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGTC
* * *
34782896 AATAGCCATAGCAGATGCAAAACTATTCACCTGTTGCAAGCAATCTACCATGC-ATAACTCGTTG
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAAATCGTTG
* *
34782960 TTTGATG-GGAAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACCC
456 TTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCAATTACCAGCAAACCC
* *
34783024 TTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGGTCAAG
521 TTCGATGGCATTAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
* *
34783089 GTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGATG
586 GTAGCATTACAAGGCCAACCATTATGGAAAATTATTTTGAAATAAAATCGACCATGATCTAAATG
* * *
34783154 ATCCAAAATAATCATCAATTTAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGGA
651 ATCCAAAATAATCATCAATTCAGA-GAACCATGACGGATGTCACAAATCAACATCTAAAACGGGT
* *
34783219 CCTTCAATTTTGTGATACATTCT-AATATAACGGGGTTATTGATGAAGCTATTCATCTTCGGTTG
715 CCTTCAATTTTGTGATACATTCTAAATATAACGGGGTCATTGATGAAGCTATTAATCTTCGGTTG
*
34783283 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
780 TTTCCCTTATCCTTGATCGATATTCATTTAAGTTA
* * * *
34783318 AAATTAAAGTTAACTTAATATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
*
34783383 TGTAAAAACTGTATTACAACCTGAC-CTGTATACTTGCAGACACCACCTCAATTCCATTCATTTA
66 TGTAAAAACTATATTACAACCTGACTC-GTATACTTGCAGACACCACCTCAATTCCATTCATTTA
* *
34783447 GTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCC
130 GTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCC
* *
34783512 GAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGTAATTTATA
195 GAGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
* *
34783577 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTATG
260 AATTGTAGATACAATTTTTTTATTGTTACTAACATC-TTTATTTTCTTTTTAGTTTCAGTGTAGG
* * ** * *
34783642 TCTTGTAGTAGTGGAACTGTTATAGAGCGAGTCGCTGATCTAGAGAGAATAATCTGTAGGAATCG
324 ACTCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCG
34783707 TCAATAGCCATAGCAGATGCAAAACCAATCAC
389 TCAATAGCCATAGCAGATGCAAAACCAATCAC
34783739 TTGTACTAAT
Statistics
Matches: 4294, Mismatches: 740, Indels: 703
0.75 0.13 0.12
Matches are distributed among these distances:
799 2 0.00
800 2 0.00
801 11 0.00
802 11 0.00
803 9 0.00
804 16 0.00
805 25 0.01
806 13 0.00
807 15 0.00
808 12 0.00
809 16 0.00
810 5 0.00
811 3 0.00
812 608 0.14
813 591 0.14
814 1818 0.42
815 125 0.03
816 8 0.00
818 2 0.00
819 7 0.00
820 10 0.00
821 6 0.00
822 19 0.00
823 18 0.00
824 6 0.00
825 1 0.00
826 9 0.00
827 9 0.00
828 19 0.00
829 13 0.00
830 8 0.00
831 9 0.00
832 8 0.00
833 7 0.00
834 11 0.00
835 18 0.00
836 16 0.00
837 8 0.00
838 4 0.00
839 10 0.00
840 6 0.00
841 9 0.00
842 26 0.01
843 12 0.00
844 14 0.00
845 7 0.00
846 6 0.00
847 9 0.00
848 25 0.01
849 22 0.01
850 34 0.01
851 21 0.00
852 32 0.01
853 24 0.01
854 19 0.00
855 39 0.01
856 37 0.01
857 27 0.01
858 23 0.01
859 20 0.00
860 18 0.00
861 21 0.00
862 20 0.00
863 24 0.01
864 21 0.00
865 7 0.00
866 22 0.01
867 31 0.01
868 26 0.01
869 39 0.01
870 18 0.00
871 10 0.00
872 13 0.00
873 7 0.00
874 24 0.01
875 31 0.01
876 18 0.00
877 10 0.00
878 9 0.00
879 5 0.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (814 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTATTTTCTTTTTAGTTTCAGTGTAGGAC
TCGTAGTAGTGGAACAATTATAGAGCGAGTCACGGATCTAGAGAGAATAATCTGTAGGAATCGTC
AATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAAATCGTTG
TTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCAATTACCAGCAAACCC
TTCGATGGCATTAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCAAG
GTAGCATTACAAGGCCAACCATTATGGAAAATTATTTTGAAATAAAATCGACCATGATCTAAATG
ATCCAAAATAATCATCAATTCAGAGAACCATGACGGATGTCACAAATCAACATCTAAAACGGGTC
CTTCAATTTTGTGATACATTCTAAATATAACGGGGTCATTGATGAAGCTATTAATCTTCGGTTGT
TTCCCTTATCCTTGATCGATATTCATTTAAGTTA
Found at i:34780003 original size:448 final size:448
Alignment explanation
Indices: 34779168--34780036 Score: 1540
Period size: 448 Copynumber: 1.9 Consensus size: 448
34779158 GTTTAAGTTA
*
34779168 AAGTTAAAGTTAACTTAATATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAACTTAATATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34779233 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34779298 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
* *
34779363 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGTAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* * * *
34779428 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTCACTAACATCTTTTATTTTCCTTTTAGTTTAAGTGTAGGA
* ** *
34779493 CTTGTAGTAGTGGAACTGTTATAGAGCGAGTCGCTGATCTAGAAAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAAAGAATAATCTGTAGGAATCGT
34779558 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
* * *
34779616 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
1 AAGTTAAAGTTAACTTAATATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
34779681 TGTAAAAAGTATATTACAACCTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34779746 TTTCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
34779811 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34779876 ATTGTAGATAGAATTTTTTTATTGTCACTAACATCTTTTATTTTCTTTTTAGTTTAAGTGTAGGA
261 ATTGTAGATACAATTTTTTTATTGTCACTAACATCTTTTATTTTCCTTTTAGTTTAAGTGTAGGA
*
34779941 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAAAGAATAATCTGTAGGAATCGT
34780006 CAATAGCCATAGCAGATGCAAAACCAATCAC
391 CAATAGCCATAGCAGATGCAAAACCAATCAC
34780037 CTGTTGCAAG
Statistics
Matches: 399, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
448 399 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (448 bp):
AAGTTAAAGTTAACTTAATATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAACTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTCACTAACATCTTTTATTTTCCTTTTAGTTTAAGTGTAGGA
CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAAAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
Found at i:34784156 original size:448 final size:448
Alignment explanation
Indices: 34783321--34784185 Score: 1507
Period size: 448 Copynumber: 1.9 Consensus size: 448
34783311 TAAGTTAAAA
* *
34783321 TTAAAGTTAACTTAATATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGT
1 TTAAAGTTAACTTAATATTAGCCTCCCCTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGT
*
34783386 AAAAACTGTATTACAACCTGACCTGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTG
66 AAAAACTATATTACAACCTGACCTGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTG
* * *
34783451 CAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCGAGG
131 CAATATTTACACTCTGGATGTTAGTATGACCGGAGGCGGTCAAGTGATTGGAGCCATTGCCGAGG
*
34783516 AGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGTAATTTATAAATT
196 AGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATT
* * *
34783581 GTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTATGTCTT
261 GTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTAGGGCTC
** * * *
34783646 GTAGTAGTGGAACTGTTATAGAGCGAGTCGCTGATCTAGAGAGAATAATCTGTAGGAATCGTCAA
326 GTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGTCAA
34783711 TAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTTAAG
391 TAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTTAAG
* * *
34783769 TTAAAGTTAATTTAGTATTAGCCTCCCCTGGGTTTGATCCTTGGAGTACTCACCTACTTTGTTGT
1 TTAAAGTTAACTTAATATTAGCCTCCCCTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGT
* *
34783834 AAAAACTATATTACAACCTGA-CTCGTCTACTTTCAGACACCACCTCAATTCCATTCATTTAGTT
66 AAAAACTATATTACAACCTGACCT-GTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTT
*
34783898 TCAATATTTACACTCTGGATGTTAGTATGACCGGAGGCGGTCAAGTGATTGGAGCCATTGCCGAG
130 GCAATATTTACACTCTGGATGTTAGTATGACCGGAGGCGGTCAAGTGATTGGAGCCATTGCCGAG
34783963 GAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAAT
195 GAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAAT
**
34784028 TGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTTTTTTTAGTTTCAGTGTAGGGCT
260 TGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTAGGGCT
34784093 CGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGTCA
325 CGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGTCA
34784158 ATAGCCATAGCAGATGCAAAACCAATCA
390 ATAGCCATAGCAGATGCAAAACCAATCA
34784186 TCTGTTGCAA
Statistics
Matches: 393, Mismatches: 23, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
447 2 0.01
448 391 0.99
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (448 bp):
TTAAAGTTAACTTAATATTAGCCTCCCCTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGT
AAAAACTATATTACAACCTGACCTGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTG
CAATATTTACACTCTGGATGTTAGTATGACCGGAGGCGGTCAAGTGATTGGAGCCATTGCCGAGG
AGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATT
GTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTAGGGCTC
GTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGTCAA
TAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTTAAG
Found at i:34785638 original size:446 final size:448
Alignment explanation
Indices: 34784580--34785895 Score: 2275
Period size: 446 Copynumber: 2.9 Consensus size: 448
34784570 ATTTAAGTTA
* **
34784580 AAGTTAAAGTTAATTTAGCATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34784645 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * * *
34784710 TTACAATATTTACACTCTGGATGTTAGTATGTCTGTAGGCA-GTCAAG-GTTTGGTGCCATTACC
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGG-AGGTCAAGTGTTTGGTGCCATTGCC
*
34784773 GAGGAGGCAGCGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
195 GAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
34784838 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGG
260 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGG
* *
34784903 ACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCATTGATCTAAAGAGAATAATCTGTAGGAATCA
325 ACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCG
34784968 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACCAATTAGATCTATATTCGTTG
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACCAATTAGATCTATATTCGTTG
* *
34785027 AATTTCAAGTTAATTTAGTATTAGCC-TCCATTGGGTTTGATCCTTGGAGTACTCACCTACTTCG
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCC-TTGGGTTTGATCCTTGGAGTACTCACCTACTTCG
*
34785091 TTGTAAAAACTACATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTA
65 TTGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTA
** *
34785156 GTTGCAATATTTACACTCTAAATGTTAGTATGTCCGGAGGAGGTCAAGTGTTTGGTGCCATTGCT
130 GTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGAGGTCAAGTGTTTGGTGCCATTGCC
*
34785221 GAGGAGGCAACGCTACTAAATTGATTATAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
195 GAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
34785286 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
260 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTA-G
34785351 G-CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCT-AAGAGAATAATCTGTAGGAATC
324 GACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATC
* * *
34785414 GTCAATAGCCATAGCAGATG-AAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
389 GTCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACCAATTAGATCTATATTCGTTG
*
34785473 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCCTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * *
34785538 TATAAAAACTATATTACAAACTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
34785603 TTGCAATATTTACACTCTGGTTGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGAGGTCAAGTGTTTGGTGCCATTGCCG
34785668 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34785733 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTATTTTCAGTGTAGGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
* **
34785798 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
*
34785863 CAATAGCCATAGCAGTTGCAAAACCAATCACCT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCT
34785896 ATTGCAAGCA
Statistics
Matches: 822, Mismatches: 39, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
445 2 0.00
446 382 0.46
447 244 0.30
448 192 0.23
449 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (448 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGAGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACCAATTAGATCTATATTCGTTG
Found at i:34789652 original size:448 final size:448
Alignment explanation
Indices: 34788811--34789683 Score: 1568
Period size: 448 Copynumber: 1.9 Consensus size: 448
34788801 GTTTAAGTTA
*
34788811 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGAACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGAACTCACCTACTTCGT
34788876 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
34788941 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGTCG
131 TTGCAATATTTACACTCCGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
* * *
34789006 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTAGAA
34789071 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
34789136 CTCGTAGTAGTGGAACAGTGATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
326 CTCGTAGTAGTGGAACAATGATAAAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
34789201 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34789259 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGAACTCACCTACTTCGT
* *
34789324 TGTAAAAACTATATTACAACCTTACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34789389 TTTCAATATTTACACTCCGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCCGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
34789454 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTAGAA
196 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTAGAA
34789519 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTA-GG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
34789583 ACTCGTAGTAGTGGAACAATTATAAAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
326 -CTCGTAGTAGTGGAACAATGATAAAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCG
*
34789648 TCAATAGCCATAGCAGTTGCAAAACCAATCACCTGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34789684 TGCAAGCAAT
Statistics
Matches: 406, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
447 2 0.00
448 404 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (448 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGAACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCCGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTAGAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
CTCGTAGTAGTGGAACAATGATAAAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:34790907 original size:448 final size:448
Alignment explanation
Indices: 34790072--34790939 Score: 1538
Period size: 448 Copynumber: 1.9 Consensus size: 448
34790062 GTTTAAGTTA
* *
34790072 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCCTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34790137 TGTAAAAAGTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
34790202 TTGCAATATGTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATGTACACTCTGGATGTTAGTATGACCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
*
34790267 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGTAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34790332 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTAGGG
* ** * * *
34790397 CTTGTAGTAGTGGAACTGTTATAGAGCGAGTCGCTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGT
34790462 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
*
34790520 AAGTTAAAGTTAATTTAGTATTAGCCTCCCCTGGGTTTGATCCTTGGAGTACTCACCTACTTTGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCCTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
34790585 TGTAAAAACTATATTACAACCTGACTCGTCTACTTTCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34790650 TTTCAATATTTACACTCTGGATGTTAGTATGACCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
131 TTGCAATATGTACACTCTGGATGTTAGTATGACCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
34790715 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
**
34790780 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTTTTTTTAGTTTCAGTGTAGGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTAGGG
34790845 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGT
326 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGT
34790910 CAATAGCCATAGCAGATGCAAAACCAATCA
391 CAATAGCCATAGCAGATGCAAAACCAATCA
34790940 TCTGTTGCAA
Statistics
Matches: 398, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
448 398 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (448 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTCCCCTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATGTACACTCTGGATGTTAGTATGACCGGAGGCGGTCAAGTGATTGGAGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCCTTTTAGTTTCAGTGTAGGG
CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTCTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
Found at i:34792430 original size:447 final size:448
Alignment explanation
Indices: 34791335--34792652 Score: 2291
Period size: 447 Copynumber: 2.9 Consensus size: 448
34791325 ATTTAAGTTA
* **
34791335 AAGTTAAAGTTAATTTAGCATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTTAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34791400 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * * * * *
34791465 TTACAATATTTACACTCTGGATGTTAGTATGTCTGTAGGCAGTCAAGGGTTTGGTGCCATTACCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34791530 AGGAGGCAGCGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34791595 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
* *
34791660 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCATTGATCTAAAGAGAATAATCTGTAGGAATCAT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
34791725 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACCAATTAGATCTATATTCGTTG
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACCAATTAGATCTATATTCGTTG
* *
34791783 AATTTCAAGTTAATTTAGTATTAGCC-TCCATTGGGTTTGATCCTTGGAGTACTCACCTACTTCG
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCC-TTGGGTTTGATCCTTGGAGTACTCACCTACTTCG
*
34791847 TTGTAAAAACTACATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTA
65 TTGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTA
** * *
34791912 GTTGCAATATTTACACTCTAAATGTTAGTATGTCCGGAGGAGGTCAAGTGTTTGGTGCCATTGCT
130 GTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCC
*
34791977 GAGGAGGCAACGCTACTAAATTGATTATAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
195 GAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
34792042 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
260 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTA-G
34792107 G-CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATC
324 GACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATC
* * *
34792171 GTCAATAGCCATAGCAGATG-AAAACCAATCACTTGTACTAATTAGATCTATATTCGTTT
389 GTCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACCAATTAGATCTATATTCGTTG
*
34792230 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCCTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * *
34792295 TATAAAAACTATATTACAAACTGACTCGTCTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34792360 TTGCAATATTTACACTCTGGTTGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34792425 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34792490 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTATTTTCAGTGTAGGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
* **
34792555 CTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
*
34792620 CAATAGCCATAGCAGTTGCAAAACCAATCACCT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCT
34792653 ATTGCAAGCA
Statistics
Matches: 822, Mismatches: 43, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
446 2 0.00
447 421 0.51
448 397 0.48
449 2 0.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (448 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACCAATTAGATCTATATTCGTTG
Found at i:34795143 original size:448 final size:448
Alignment explanation
Indices: 34794302--34795174 Score: 1656
Period size: 448 Copynumber: 1.9 Consensus size: 448
34794292 GTTTAAGTTA
34794302 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34794367 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34794432 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
34794497 AGGACGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGACGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAAGTTGGAAATTTATAA
*
34794562 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
34794627 CTCGTAGTAGTGGAACAGTTATAGAGTGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
*
34794692 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAACCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
*
34794750 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34794815 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34794880 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34794945 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAAGTTGGAAATTTATAA
196 AGGACGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAAGTTGGAAATTTATAA
34795010 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34795075 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATGTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
34795140 CAATAACCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAACCATAGCAGATGCAAAACCAATCACCTGT
34795175 TGCAAGCAAT
Statistics
Matches: 415, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
448 415 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (448 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGACGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAAGTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
CAATAACCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
Found at i:34797586 original size:815 final size:815
Alignment explanation
Indices: 34796011--34798064 Score: 3770
Period size: 815 Copynumber: 2.5 Consensus size: 815
34796001 ATATTCGTTT
* *
34796011 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
34796076 TGTAAAAACTATATTACAACCTTACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * * *
34796141 TTTCAATATTTACACTCCGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
34796206 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTAGAA
196 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34796271 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTA-GG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
34796335 ACTCGTAGTAGTGGAACAATTATAAAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
326 -CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
* *
34796400 TCAATAGCCATAGCAGTTGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGACAACCCGT
* *
34796465 TGTTTGATGAGGTAAACGAACTTAATATCCAAGACTTACCACCACCACCGCAATTACCAGCAAAC
455 TGTTTGATGAGATAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAAC
** *
34796530 CCTTCGATGGCATGAGAAGGGCGAAACCAAAGGGATTACGCACTACCAAATATGGTAATGGTTCA
520 CCTTCGATGGCATGAGAACAGCGAAACCAAAGGGATTACGCACTACCAAATATGGTAATAGTTCA
*
34796595 AGGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGA
585 AGGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGA
34796660 TGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGG
650 TGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGG
*
34796725 GGCCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTT
715 GACCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTT
34796790 GTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
780 GTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
34796826 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34796891 TGTAAAAAGTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34796956 TTGCAATATGTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34797021 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34797086 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
34797151 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34797216 CAATAACCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGACAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGACAACCCGTT
34797281 GTTTGATGAGATAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
456 GTTTGATGAGATAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
* * *
34797346 CTTCGATGGCATGAGAACAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATAGTTCAA
521 CTTCGATGGCATGAGAACAGCGAAACCAAAGGGATTACGCACTACCAAATATGGTAATAGTTCAA
34797411 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
34797476 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
651 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
*
34797541 ACCTTCAATTTTGTGATACTTTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
716 ACCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
*
34797606 TTTCCCTTATCCTTGATCGATATTTGTTTAAGTTA
781 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
*
34797641 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGAACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34797706 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34797771 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGTCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34797836 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34797901 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTC-TTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
34797965 CTCGTAGTAGTGGAACAGTGATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34798030 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34798065 ACTAATTAGA
Statistics
Matches: 1199, Mismatches: 39, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
814 116 0.10
815 1081 0.90
816 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (815 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGACAACCCGTT
GTTTGATGAGATAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
CTTCGATGGCATGAGAACAGCGAAACCAAAGGGATTACGCACTACCAAATATGGTAATAGTTCAA
GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
ACCTTCAATTTTGTGATACATTCTAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
Found at i:34798481 original size:447 final size:447
Alignment explanation
Indices: 34797641--34798511 Score: 1575
Period size: 447 Copynumber: 1.9 Consensus size: 447
34797631 GTTTAAGTTA
*
34797641 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGAACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGAACTCACCTACTTCGT
34797706 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34797771 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGTCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
* *
34797836 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34797901 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTATGGC
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTATGGC
* * *
34797966 TCGTAGTAGTGGAACAGTGATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGTC
326 TCGTAGTAGTGGAACAATGATAAAGCGAGTCACTGATCAAGAGAGAATAATCTCTAGGAATCGTC
34798031 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34798088 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGAACTCACCTACTTCGT
*
34798153 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34798218 TTTCAATATTTACACTCTGGATGTTAGTATGT-CGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
34798282 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34798347 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTA-GG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTC-TTTTAGTTTCAGTGTATGG
* *
34798411 ACTCGTAGTAGTGGAACAATTATAAAGCGAGTCACTGATCAAGAGAGAATAATCTGTAGGAATCG
325 -CTCGTAGTAGTGGAACAATGATAAAGCGAGTCACTGATCAAGAGAGAATAATCTCTAGGAATCG
*
34798476 TCAATAGCCATAGCAGTTGCAAAACCAATCACCTGT
389 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34798512 TGCAAGCAAT
Statistics
Matches: 407, Mismatches: 15, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
446 140 0.34
447 267 0.66
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (447 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGAACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTAGTTTCAGTGTATGGC
TCGTAGTAGTGGAACAATGATAAAGCGAGTCACTGATCAAGAGAGAATAATCTCTAGGAATCGTC
AATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:34799874 original size:447 final size:448
Alignment explanation
Indices: 34798902--34800221 Score: 2381
Period size: 447 Copynumber: 2.9 Consensus size: 448
34798892 GTTTAAGTTA
* *
34798902 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34798967 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACATCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34799032 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
34799097 AGGAGGCAACGCTACTGAATTGAATTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34799162 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34799227 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGAAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34799292 GAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
34799350 AAGTTCAAGTTAATTCAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34799415 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34799480 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGAAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34799545 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34799610 ATTGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTCCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34799674 CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34799739 CAATAGCCATAGCAGCTGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
34799797 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTATTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34799862 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* ** *
34799927 TTTCAATATTTACACTCTGGATGTTAGTATGTTGGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
34799992 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAATTTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34800057 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34800122 CTCGTAGTAGTGGAACAATTATAAAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34800187 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34800222 TGCAAGCAAT
Statistics
Matches: 837, Mismatches: 34, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
447 429 0.51
448 408 0.49
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:34801374 original size:814 final size:814
Alignment explanation
Indices: 34799797--34801849 Score: 3748
Period size: 814 Copynumber: 2.5 Consensus size: 814
34799787 ATATTCGTTT
* * * *
34799797 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTATTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
*
34799862 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* ** *
34799927 TTTCAATATTTACACTCTGGATGTTAGTATGTTGGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
34799992 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAATTTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34800057 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
261 ATTGTAGATACAA-TTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34800122 CTCGTAGTAGTGGAACAATTATAAAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34800187 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
*
34800252 GTTTGATGAGGTAAACGAACTTAATATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
455 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
34800317 CTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
520 CTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
*
34800382 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
585 GGTAGCATTACAAGGCAAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
*
34800447 GATCCAAACTAATCTTCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGGG
650 GATCCAAACTAATCTTCAATTCAGAGGAACCATGACGGATGACCCAAATCAACATCTAAAACGGG
* * *
34800512 TCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTTATTGATGAAGCTATTCATCTTCGGTTG
715 TCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCAGTTG
*
34800577 TTTCCCTTATCCTTGATCGATATTCGATTAAGTTA
780 TTTCCCATATCCTTGATCGATATTCGATTAAGTTA
34800612 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
34800677 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
34800742 TTGCAATACTTACACTCTGGATGTTAGTATGCCCGGAGGCGGTCAAGAGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34800807 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34800872 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGAC
261 ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGAC
34800937 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
326 TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
*
34801002 AATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACTATGCGATAACCCGTTG
391 AATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTTG
* *
34801067 TTTGGTGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCTATTACCAGCAAACCC
456 TTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACCC
*
34801132 TTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTCCGCACTACCAAATATGGTGATGGTTCAAG
521 TTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAAG
34801197 GTAGCATTACAAGGCAAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGATG
586 GTAGCATTACAAGGCAAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGATG
34801262 ATCCAAACTAATCTTCAATTCAGAGGAACCATGACGGATGACCCAAATCAACATCTAAAACGGGT
651 ATCCAAACTAATCTTCAATTCAGAGGAACCATGACGGATGACCCAAATCAACATCTAAAACGGGT
34801327 CCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCAGTTGT
716 CCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCAGTTGT
*
34801392 TTCCCATATCCTTGATCGATATTCGTTTAAGTTA
781 TTCCCATATCCTTGATCGATATTCGATTAAGTTA
*
34801426 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGTGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
34801491 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34801556 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
34801621 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGAATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34801686 ATTGTAGATACAATTTTCTTATTGTTACTAGCATCTTTTATTTTC-TTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTT-TTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34801750 CTCGTAGCAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
325 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34801815 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
390 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34801850 ACTAATTAGA
Statistics
Matches: 1197, Mismatches: 40, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
814 912 0.76
815 285 0.24
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (814 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGAC
TCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTC
AATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTTG
TTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACCC
TTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAAG
GTAGCATTACAAGGCAAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGATG
ATCCAAACTAATCTTCAATTCAGAGGAACCATGACGGATGACCCAAATCAACATCTAAAACGGGT
CCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCAGTTGT
TTCCCATATCCTTGATCGATATTCGATTAAGTTA
Found at i:34803451 original size:815 final size:815
Alignment explanation
Indices: 34801873--34804742 Score: 5238
Period size: 815 Copynumber: 3.5 Consensus size: 815
34801863 ATATTCATTT
* * *
34801873 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
* * *
34801938 TGTAAAAACTATATTACAACCTGACTCTTGTACTTGCAGACACCACCACAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
34802003 TTTCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
34802068 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTAAAAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34802133 ATTGTAGATAAAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34802198 CTCGTAGTAGTGGAACAATTATAAAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34802263 CAATAGCCATAGCAGTTGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
*
34802328 GTTTGATGAGGTAAACGAATTTAATATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAATATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
*
34802393 CTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGTTGATGGTTCAA
521 CTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
*
34802458 GGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
* *
34802523 GATCCAAAATAATCTGCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGGG
651 GATCCAAACTAATCTTCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGGG
*
34802588 TCCTTCAATTTTGTGATGCATTTAAATATAACAGGGTCATTAATGAAGCTATTCATCTTCGGTTG
716 TCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCGGTTG
34802653 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
781 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
34802688 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
*
34802753 TGTAAAAACTATATTACAACCTGACTCGTATACTTGTAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34802818 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34802883 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAGTTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34802948 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTCATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34803013 CTCGTAGTAGTGGAAGAGTTATAGTGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34803078 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
34803143 GTTTGATGAGGTAAACGAACTTAATATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAATATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
34803208 CTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
521 CTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
34803273 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
34803338 GATCCAAACTAATCTTCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGGG
651 GATCCAAACTAATCTTCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGGG
* *
34803403 TCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTTATTGATGAAGCTATTCATCTTCGGTTG
716 TCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCGGTTG
*
34803468 TTTCCCTTATCCTTGATCGATATTCGATTAAGTTA
781 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
*
34803503 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGAGCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
34803568 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34803633 TTGCAATATTTACACTCTGGATGTTAGTATGCCCGGAGGCGGTCAAGAGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34803698 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34803763 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
34803828 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34803893 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACTATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
* *
34803958 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCTATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAATATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
* *
34804023 CTTCGATGGGATGAGAAGGGTGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
521 CTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
*
34804088 GGTAGCATTACAAGGCAAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
*
34804153 GATCCAAACTAATCTTCAATTCAGAGGAACCATGACGGATGACCCAAATCAACATCTAAAACGGG
651 GATCCAAACTAATCTTCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGGG
*
34804218 TCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCAGTTG
716 TCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCGGTTG
*
34804283 TTTCCCATATCCTTGATCGATATTCGTTTAAGTTA
781 TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
* *
34804318 AAGTTAATGTTAATTTAGTATTAGCCTTCCTTGTGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
*
34804383 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACTACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34804448 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* **
34804513 AGGAGGCAACGCTACTGAATTGATTTTAATATTTT-AGTTTTATATAATAATTTGGAAATTTATA
196 AGGAGGCAACGCTACTAAATTGATTTTAAT-TTTTGAGTTTTATAGGATAATTTGGAAATTTATA
* *
34804577 AATTGTAGATACAATTTTCTTATTGTTACTAGCATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
260 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
* * *
34804642 GCTCGTAGCAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCG
325 ACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
34804707 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34804743 ACTAATTAGA
Statistics
Matches: 1989, Mismatches: 65, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
815 1985 1.00
816 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (815 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
GTTTGATGAGGTAAACGAACTTAATATCCAAGACTTACCACCACCACCGCAATTACCAGCAAACC
CTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
GATCCAAACTAATCTTCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGGG
TCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTAATGAAGCTATTCATCTTCGGTTG
TTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
Found at i:34805161 original size:448 final size:448
Alignment explanation
Indices: 34804318--34805190 Score: 1482
Period size: 448 Copynumber: 1.9 Consensus size: 448
34804308 GTTTAAGTTA
* *
34804318 AAGTTAATGTTAATTTAGTATTAGCCTTCCTTGTGTTTGATCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAATGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
* *
34804383 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACTACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCACAATTCCATTCATTTAG
*
34804448 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
* * * * *
34804513 AGGAGGCAACGCTACTGAATTGATTTTAATATTTTAGTTTTATATAATAATTTGGAAATTTATAA
196 AGGAGGCAACACTACTAAATTGATTTTAATATTTTAGTTTAAAAGAATAATTTGGAAATTTATAA
* *
34804578 ATTGTAGATACAATTTTCTTATTGTTACTAGCATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATAAAATTTTCTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
* *
34804643 CTCGTAGCAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGCAGTGGAACAATTATAAAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
34804708 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
*
34804766 AAGTTCAA-GTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCG
1 AAGTT-AATGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCA
* *
34804830 TTGTAAAAACTATATTACAACCTGACTCTTGTACTTGCAGACACCACCACAATTCCATTCATTTA
65 TTGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCACAATTCCATTCATTTA
* *
34804895 GTTTCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCC
130 GTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCC
*
34804960 GAGGAGGCAACACTACTAAATTGATTTTAAT-TTTTGAGTTTAAAAGGATAATTTGGAAATTTAT
195 GAGGAGGCAACACTACTAAATTGATTTTAATATTTT-AGTTTAAAAGAATAATTTGGAAATTTAT
*
34805024 AAATTGTAGATAAAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTA-
259 AAATTGTAGATAAAATTTTCTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAT
* *
34805088 GGACTCGTAGTAGTGGAACAATTATAAAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAAT
324 GG-CTCGTAGCAGTGGAACAATTATAAAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAAT
*
34805153 CGTCAATAGCCATAGCAGTTGCAAAACCAATCACCTGT
388 CGTCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34805191 TGCAAGCAAT
Statistics
Matches: 398, Mismatches: 24, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
447 6 0.02
448 390 0.98
449 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (448 bp):
AAGTTAATGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCAT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCACAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
AGGAGGCAACACTACTAAATTGATTTTAATATTTTAGTTTAAAAGAATAATTTGGAAATTTATAA
ATTGTAGATAAAATTTTCTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
CTCGTAGCAGTGGAACAATTATAAAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCATTT
Found at i:34806341 original size:815 final size:815
Alignment explanation
Indices: 34804766--34806821 Score: 3621
Period size: 815 Copynumber: 2.5 Consensus size: 815
34804756 ATATTCATTT
* *
34804766 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * *
34804831 TGTAAAAACTATATTACAACCTGACTCTTGTACTTGCAGACACCACCACAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
34804896 TTTCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
34804961 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTAAAAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34805026 ATTGTAGATAAAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34805091 CTCGTAGTAGTGGAACAATTATAAAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34805156 CAATAGCCATAGCAGTTGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
* *
34805221 GTTTGATGAGGTAAACGAATTTAATATCCAAGACTTACCACCACCACCGTAATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGTAATTACCAGCAAACC
* *
34805286 CTTCGATGGCATGAGAAGGGCGAAACCTAAGGGATTACGCACTACCAAATATGTTGATGGTTCAA
521 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
*
34805351 GGTAGCATTACAAGGCCAGCCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
* * * *
34805416 GATCCAAACTAATCTTCAATTCAGAGGCACCATGACGGATGACCCAAATCAACATCTAAAACGGG
651 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
* * *
34805481 TCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTTATTGATGAAGCTATTCATCTTCGGTTG
716 GCCTTCAATTTTGTGATACATTTAAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
34805546 TTTCCCTTATCCTTGATCGATATTCGATTAAGTTA
781 TTTCCCTTATCCTTGATCGATATTCGATTAAGTTA
* *
34805581 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGAGCCTTGGAGTACTCACCTACTTCAT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34805646 TGTAAAAACTATATTACAACCTGACTCGTATACTTGTAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34805711 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34805776 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAGTTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34805841 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTCATTTTTTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* * *
34805906 CTCGTAGTAGTGGAACAGTTATAGTGCGAGTCACTGATCTTGAGAGAATAATCTATAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
34805971 CAATAGCCATAGCAGATGCAAAACGAATCACCTGTTGCAAGCAATCTACTATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
34806036 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCT-ATTACCAGCAAAC
456 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCG-TAATTACCAGCAAAC
* *
34806100 CCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCA
520 CCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCA
34806165 AGGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGA
585 AGGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGA
34806230 TGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGG
650 TGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGG
34806295 GGCCTTCAATTTTGTGATACATTCT-AATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGT
715 GGCCTTCAATTTTGTGATACATT-TAAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGT
*
34806359 TGTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
779 TGTTTCCCTTATCCTTGATCGATATTCGATTAAGTTA
*
34806396 AAGTTAAAGTTAATTTAGTATTATCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34806461 TGTAAAAAGTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34806526 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
34806591 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34806656 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34806721 CTCGTAGTAGTGGAATAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34806786 CAATAGCCATAGCAGATGAAAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATG-CAAAACCAATCACCTGT
34806822 ACTAATTAGA
Statistics
Matches: 1178, Mismatches: 60, Indels: 5
0.95 0.05 0.00
Matches are distributed among these distances:
815 1161 0.99
816 17 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (815 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACCCGTT
GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGTAATTACCAGCAAACC
CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATATGGTGATGGTTCAA
GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
GCCTTCAATTTTGTGATACATTTAAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTTG
TTTCCCTTATCCTTGATCGATATTCGATTAAGTTA
Found at i:34807481 original size:448 final size:448
Alignment explanation
Indices: 34806396--34808165 Score: 3198
Period size: 448 Copynumber: 3.9 Consensus size: 448
34806386 GTTTAAGTTA
* * *
34806396 AAGTTAAAGTTAATTTAGTATTATCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34806461 TGTAAAAAGTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34806526 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
34806591 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34806656 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* * * *
34806721 CTCGTAGTAGTGGAATAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
34806786 CAATAGCCATAGCAGATGAAAAAACCAATCACCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATG-CAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
34806845 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34806910 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTAAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34806975 TTTCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34807040 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34807105 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* *
34807170 CTTGCAGTAGTGGAACAATTATAGAGTGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34807235 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
34807293 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34807358 TGTTAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34807423 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * *
34807488 AGAAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34807553 ATTGCAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
*
34807618 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34807683 CAATAGCCATAGCAGATGCAGAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34807741 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGTAGTACTCACCTACTTTGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34807806 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
34807871 TTTCAATATTTACACTCTGGATGTTAGTATGTTCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34807936 AGGAGGCAACACTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34808001 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTTTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* *
34808066 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34808131 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34808166 TACAAGCAAT
Statistics
Matches: 1275, Mismatches: 46, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
448 882 0.69
449 393 0.31
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
CTCGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:34809932 original size:448 final size:448
Alignment explanation
Indices: 34808556--34810771 Score: 4083
Period size: 448 Copynumber: 4.9 Consensus size: 448
34808546 GTTTAAGTTA
* *
34808556 AAGTTAAAGTTAATTTAGTATTAGCCTTCTTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * * *
34808621 TTTAAAAACTATATCACAACCTGACTCGTATACTTGCACACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * * *
34808686 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTTAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
* *
34808751 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* * *
34808816 ATTGTAGATACAATTTTCTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* * * * *
34808881 CTCGTAGTAGTGGAATAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34808946 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
34809004 AAGTTCAAGTTAATTTAGTATTAGCATTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34809069 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
34809134 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
*
34809199 TGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGG-AATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34809263 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
34809328 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34809393 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
34809451 AAGTTCAAGTTAATTTAGTATTTGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34809516 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34809581 TTGCAATATTTACACTCTAGATGTTAGTATGTCTGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
34809646 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34809711 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
*
34809776 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34809841 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34809899 AAGTTCAAGTTAATTTAGTATTATCCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34809964 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
34810029 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
*
34810094 TGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34810159 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
34810224 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34810289 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34810347 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACGCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34810412 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34810477 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
34810542 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34810607 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* * * *
34810672 CTCGTAGTAGTGGAGCAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34810737 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34810772 TGCAAGCAAT
Statistics
Matches: 1721, Mismatches: 46, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
447 435 0.25
448 1286 0.75
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:34810612 original size:896 final size:895
Alignment explanation
Indices: 34808556--34810771 Score: 4162
Period size: 895 Copynumber: 2.5 Consensus size: 895
34808546 GTTTAAGTTA
* *
34808556 AAGTTAAAGTTAATTTAGTATTAGCCTTCTTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * * *
34808621 TTTAAAAACTATATCACAACCTGACTCGTATACTTGCACACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34808686 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTTAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
34808751 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34808816 ATTGTAGATACAATTTTCTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* *
34808881 CTCGTAGTAGTGGAATAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34808946 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
*
34809011 AGTTAATTTAGTATTAGCATTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
456 AGTTAATTTAGTATTAGCACTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
34809076 ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
521 ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
34809141 ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
586 ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
34809206 AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAATTTATAAATTGTAGA
651 AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAATTTATAAATTGTAGA
34809271 TACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAGT
716 TACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAGT
34809336 AGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCC
781 AGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCC
34809401 ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
846 ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
34809451 AAGTTCAAGTTAATTTAGTATTTGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34809516 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34809581 TTGCAATATTTACACTCTAGATGTTAGTATGTCTGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34809646 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34809711 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* * * *
34809776 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34809841 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
* *
34809906 AGTTAATTTAGTATTATCCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
456 AGTTAATTTAGTATTAGCACTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
34809971 ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
521 ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
34810036 ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
586 ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
34810101 AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
651 AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGG-AATTTATAAATTGTAG
34810166 ATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAG
715 ATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAG
34810231 TAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGC
780 TAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGC
34810296 CATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
845 CATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34810347 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACGCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34810412 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34810477 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34810542 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34810607 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
34810672 CTCGTAGTAGTGGAGCAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34810737 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34810772 TGCAAGCAAT
Statistics
Matches: 1283, Mismatches: 37, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
895 674 0.53
896 609 0.47
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (895 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
AGTTAATTTAGTATTAGCACTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAATTTATAAATTGTAGA
TACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAGT
AGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCC
ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:34811924 original size:814 final size:815
Alignment explanation
Indices: 34810347--34816716 Score: 5340
Period size: 814 Copynumber: 7.5 Consensus size: 815
34810337 ATATTCGTTT
* * *
34810347 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACGCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34810412 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34810477 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34810542 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34810607 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
34810672 CTCGTAGTAGTGGAGCAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34810737 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACTATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTACAAGCAATCTACTATGCGATAACCCGTT
* *
34810802 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCTATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCCATTACCAGCAAACC
34810867 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCAGGTGATGGTTCAA
521 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCAGGTGATGGTTCAA
34810932 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
* *
34810997 GATCCAAAATAATCTGCAATTCAGGGGAACCATGACGGATGACCCAAATCAACATCTAAAACGGG
651 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
*
34811062 TCCTTCAATTTTCTGATGCATTTAAATAAAACGGGGTCATTAATGAAGCTATTCATCTTCGGTTG
716 TCCTTCAATTTTCTGATACATTTAAATAAAACGGGGTCATTAATGAAGCTATTCATCTTCGGTTG
34811127 TTTCCCGTATCCTTGATCGATATTCGTTTAAGTTA
781 TTTCCCGTATCCTTGATCGATATTCGTTTAAGTTA
34811162 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34811227 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34811292 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34811357 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGATTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34811422 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTT-TTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
34811486 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34811551 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTACAAGCAATCTACTATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTACAAGCAATCTACTATGCGATAACCCGTT
*
34811616 GTTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCATCGCCATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCCATTACCAGCAAACC
*
34811681 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCTGGTGATGGTTCAA
521 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCAGGTGATGGTTCAA
34811746 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
34811811 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACAGG
651 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAAC-GG
* * *
34811876 G-CCTTCAATTTTGTGATACATTCT-AATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGT
715 GTCCTTCAATTTTCTGATACATT-TAAATAAAACGGGGTCATTAATGAAGCTATTCATCTTCGGT
* *
34811939 TGTTTCCCTTATCTTTGATCGATATTCGTTTAAGTTA
779 TGTTTCCCGTATCCTTGATCGATATTCGTTTAAGTTA
*
34811976 AAGTTAAAGTTAATTTAGTATTAGCCTTCTTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* *
34812041 TTTAAAAACTATATCACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34812106 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
34812171 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34812236 ATTGTAGATACAATTTTCTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
34812301 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
** * *
34812366 CAATAGCCATAGCAGATGCAAAACCAATCACCTG-TACTAATTAGATCTA-TATTCGTTTAAGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTAC-AAGCA-ATCTACTATGCG-ATAA---
** * * * ** ** ** ** * **
34812429 CAAGTTAATTTAGTATTA-GCATTCCTTG-GGTT-TGATCCTTGGA-GTACTCACCTA-CTTCG-
450 CCCGTT-GTTT-G-ATGAGGTA-AAC--GAACTTAACATCC-AAGACATAC-CACC-ACCACCGC
* ** * * * * * ***
34812488 -TTGTAAAAACTATATTACAACC-T-GACTCGTGTACT-TGCAGA-C-ACCACCTCAATTCCATT
506 CAT-TACCAGC-A-A--AC--CCTTCGA-T-G-GCA-TGAGAAGAGCGA-AACCT-AA-GGGATT
** * ** ** *** *** * *
34812547 CATTTAGTTGCAATATTTACACTCTAGAT-GTT--A-GTATGTCCGGAGGCGGTCAA--ATGTTT
557 -ATGCACTACCAA-A--T-CA-GGT-GATGGTTCAAGGTA-G-CATTACAAGGCCAACCAT-TAT
** * **** * * *** * * * * ** *
34812606 GGTGCCATTGCCGTGGAGGCAACGCTACTAAATTGATTTTAATTTTTGA-GTTTTATAGGATAAT
612 -G-GAAAATAATTTTGA---AA---TA--AAATCGACCATGA-TCTAGATGATCCA-A-AATAAT
* * * * * ***** ** * * * * *** ***
34812670 TTGGAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAA-CACCTTTTATTTTCTTTTTA
664 CTGCAA-TT-CAGA--G--GA-ACCA-TGACGGA-TGACACAAATCAACATCTA-AAAC-GGGT-
** * * ** * * * * * ** *
34812734 GTTTCAGTGTATGTCTTGCAGTA-GTGGAACAATTATAGA-GCGAGTCACTGATCTAGAGAGAAT
717 CCTTCAAT-T-T-TC-TG-A-TACAT-TTA-AA-TA-AAACG-GGGTCATTAAT-GA-AGCTATT
* * * ** * * * * ** ** * **
34812797 AATCTGTAGGAATCGTCAATAGCCATA-GC-AGAT-GCAAAACCAATCACCTGTA
769 CATCT-TCGG--TTGT---TTCCCGTATCCTTGATCG-ATATTCGTTTAAGT-TA
* * * ** ** *
34812849 CTAA-TTAGA-TCT-ATATTCGT-TTAAGTTCAAGTTAATTTAGTATT-AGCCTTCCTTGGGTTT
1 --AAGTTAAAGT-TAAT-TTAGTATT-AG--C--CTTCCTTGGGT-TTGATCC-T----------
*
34812909 GATCCTTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTGTACTTGCA
45 ------TGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTATACTTGCA
* *
34812974 GACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTAGATGTTAGTATGTCTGGAG
104 GACACCACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAG
*
34813039 GCGGTCAAATGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGT
169 GCGGTCAAGTGTTTGGTGCCATTGCCGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGT
*
34813104 TTTATAGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACACCTTT
234 TTTATAGGATAATTTGGAAATTTATAAATTGTAGATACAATTTTTTTATTGTTACTAACATCTTT
* * * *
34813169 TATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGAT
299 TATTTTCTTTTTAGTTTCAGTGTATGACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGAT
*
34813234 CTGGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACCTG-TAC
364 CTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACCTGTTAC
** * * ** * * **
34813298 TAATTAGATCTA-TATTCGTTTAAGTTCAAGTTAATTTAGTATTATCCCTCCTTGGGTTTGATCC
429 -AAGCA-ATCTACTATGCG-ATAA---CCCGTT-GTTT-G-ATGA----------GG--T-AAAC
* * *** * * * ** * * **
34813362 TTGGAGTACTCACCTACTTCGTTGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACAC
472 ---GA--ACTTA---ACATCCAAG-ACATAC--CACCACCACC-G-C-CAT-TACCAGCA-A-AC
* * ** * ** * * * * * * * **
34813427 CACCTCAATTCCATTCATTTAGTTGCAATATTTACACTCTAGATG-TTA-GTA-TGTCCGGAGGC
520 C-CTTCGATGGCA-TGA-GAAG-AGCGA-A---AC-CT-AAG-GGATTATGCACT-ACC-AAATC
* * * ** * ** * *
34813489 -GGTCAAAT-GTT--TGGT-GCCATTGCCGTGGAGGCAA-CGCTACT--AAATTGATTTT--AAT
572 AGGT--GATGGTTCAAGGTAG-CATT-AC-AAG-GCCAACCATTA-TGGAAAATAATTTTGAAAT
** * * ** * * *** * * * * *****
34813544 --TTTTGA--GTTTTATAGGATAATTTGGAAAT-TTAT-AAATT--GTA-GATACAATTTTTTTA
630 AAAATCGACCATGATCTA-GATGA-TCCAAAATAATCTGCAATTCAG-AGGA-ACCA-TGACGGA
** * * * * *** *** ** * * **
34813600 TTGTTACTAA-CACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAGTA-GTGGAACAAT
690 -TGACACAAATCAACATCTA-AAAC-GGGT-CCTTCAAT-T-T-TC-TG-A-TACAT-TTA-AA-
* * * * * ** * * * * *
34813663 TATAGA-GCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCCATAGCAGATG
742 TA-AAACG-GGGTCATTAAT-GA-AGCTATTCATCT-TCGG--TTGT---T-TCC----C-G-T-
* * * * * * *
34813727 CAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
789 ---ATCC-TTGATC-G-A-T-ATTCG-T-T-TA--AGTTA
* * *
34813767 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACGCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34813832 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34813897 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34813962 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34814027 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
34814092 CTCGTAGTAGTGGAGCAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34814157 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACTATGCGATAACCCGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTACAAGCAATCTACTATGCGATAACCCGTT
* *
34814222 GTTTGATGAGGTAAACGAACTTAACATCCAAGACTTACCACCACCACCGCTATTACCAGCAAACC
456 GTTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCCATTACCAGCAAACC
34814287 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCAGGTGATGGTTCAA
521 CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCAGGTGATGGTTCAA
34814352 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
586 GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
*
34814417 GATCCAAAATAATCTGCAATTCAG-GGAACCATGACGGATGACCCAAATCAACATCTAAAACGGG
651 GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
*
34814481 TCCTTCAATTTTCTGATGCATTTAAATAAAACGGGGTCATTAATGAAGCTATTCATCTTCGGTTG
716 TCCTTCAATTTTCTGATACATTTAAATAAAACGGGGTCATTAATGAAGCTATTCATCTTCGGTTG
34814546 TTTCCCGTATCCTTGATCGATATTCGTTTAAGTTA
781 TTTCCCGTATCCTTGATCGATATTCGTTTAAGTTA
34814581 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34814646 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34814711 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34814776 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGATTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34814841 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* * * *
34814906 CTTGCAGTAGTGGAACAATTATAGAGTGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
** * *
34814971 CAATAGCCATAGCAGATGCAAAACCAATCACCTG-TACTAATTAGATCTA-TATTCGTGTAAGTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTAC-AAGCA-ATCTACTATGCG-ATAA---
** * * ** * * *
34815034 CAAGTTAATTTAGTATTGGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAA
450 CCCGTT-GTTT-G-A-T-G--------AGG--T-AAAC---GA--ACTTA---ACATC-----CA
* ** * *** * * ** * * ** * ** * *
34815099 AAACTATATTACAACCTGAGTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCA
486 AGAC-ATACCACCACCACCGCCAT-TACCAGCA-A-ACC-CTTCGATGGCA-TGA-GAAG-AGCG
** * * * ** * * * *
34815164 ATATTTACACT-CTGGATGT-TAGTA-TGTCCGGAGGC-GGTCAAGTGTT--TGGT-GCCATTGC
543 A-A---AC-CTAAGGGAT-TAT-GCACT-ACC-AAATCAGGTGATG-GTTCAAGGTAG-CATT-A
* * * * *** * *** ** * * * *
34815222 CGAGGAGGCAACGCTACTAAATTGATTTTAATTTTTG-AGTTTTAT--AGGATAATTTGGA-AAT
596 C-AAG-GCCAAC-C-A-T-TATGGAAAATAA-TTTTGAAATAAAATCGACCATGATCTAGATGAT
** * * * ***** * ** * *** * *******
34815283 -TTATA-AAT-TGTAGATACA-A--TTTTTTTATTG-TTACTA-AAATCTTTTATTTTCTTTTTA
654 CCAAAATAATCTGCA-ATTCAGAGGAACCATGACGGATGAC-ACAAATC-AACA-TCTAAAACGG
* * ** * * * * **
34815340 GT--TTCAGTGTATGTCTTGTAGTA-GTGGAACAGTTATAGA-GCGGGTCACTGATCTAGAGAGA
715 GTCCTTCAAT-T-T-TC-TG-A-TACATTTAA-A--TA-AAACG-GGGTCATTAAT-GA-AGCTA
* * * * * * * * * *
34815401 ATAATCTCTAGGAATCGTCAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATC
767 TTCATCT-TCGG--TTGT---T-TCC----C-G-T----ATCC-TTGATC-G-A-T-ATTCG-T-
* *
34815466 TATATTCGTTT
808 T-TA--AGTTA
*
34815477 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGTTCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34815542 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34815607 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34815672 AGGAGAG-AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
196 AGGAG-GCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
*
34815736 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGG
260 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
* *
34815801 ACTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCG
325 ACTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
* * * *
34815866 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGTTGCAAGCAATCTACCATGCGATAACTCAT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGTTACAAGCAATCTACTATGCGATAACCCGT
* * * *
34815931 TGTTAGATGAGGTAAACTAACTTAACATCCAAGACTTACCACCACCACCGCAATTACCAGCAAAC
455 TGTTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCCATTACCAGCAAAC
* *
34815996 CCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTACGCACTACCAAATCTGGTGATGGTTCA
520 CCTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCAGGTGATGGTTCA
34816061 AGGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGA
585 AGGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGA
34816126 TGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGG
650 TGATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGG
* * * * *
34816191 GGCCTTCAATTTTGTGATGCATTTAAATATAACGGGGTCATTGATGAAGCTATTCATCTTCGGTT
715 GTCCTTCAATTTTCTGATACATTTAAATAAAACGGGGTCATTAATGAAGCTATTCATCTTCGGTT
*
34816256 GTTTCCCTTATCCTTGATCGATATTCGTTTAAGTTA
780 GTTTCCCGTATCCTTGATCGATATTCGTTTAAGTTA
34816292 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34816357 TGTAAAAACTATATTACAGCCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34816422 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
34816487 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34816552 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
34816617 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34816682 CAATAGCCATAGCAGATGCAAAACCAATCTCCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34816717 ACTAATTAGA
Statistics
Matches: 4517, Mismatches: 676, Indels: 724
0.76 0.11 0.12
Matches are distributed among these distances:
813 2 0.00
814 1212 0.27
815 849 0.19
816 10 0.00
817 3 0.00
818 6 0.00
819 12 0.00
820 9 0.00
821 7 0.00
822 18 0.00
823 18 0.00
824 9 0.00
825 3 0.00
826 4 0.00
827 3 0.00
828 9 0.00
829 10 0.00
830 5 0.00
831 10 0.00
832 1 0.00
833 6 0.00
834 9 0.00
835 12 0.00
836 11 0.00
837 5 0.00
838 3 0.00
839 9 0.00
840 3 0.00
841 11 0.00
842 15 0.00
843 16 0.00
844 36 0.01
845 11 0.00
846 20 0.00
847 13 0.00
848 32 0.01
849 38 0.01
850 40 0.01
851 32 0.01
852 25 0.01
853 19 0.00
854 26 0.01
855 30 0.01
856 16 0.00
857 11 0.00
858 30 0.01
859 27 0.01
860 24 0.01
861 30 0.01
862 21 0.00
863 14 0.00
864 14 0.00
865 10 0.00
866 24 0.01
867 20 0.00
868 18 0.00
869 11 0.00
870 3 0.00
871 12 0.00
872 12 0.00
873 10 0.00
874 16 0.00
875 3 0.00
876 7 0.00
877 2 0.00
878 9 0.00
879 7 0.00
880 1 0.00
881 1 0.00
882 1 0.00
886 3 0.00
887 4 0.00
888 2 0.00
889 5 0.00
890 3 0.00
891 9 0.00
892 8 0.00
893 1 0.00
894 2 0.00
895 428 0.09
896 926 0.21
897 6 0.00
901 2 0.00
903 3 0.00
904 2 0.00
905 4 0.00
906 6 0.00
907 2 0.00
908 10 0.00
909 3 0.00
910 1 0.00
912 7 0.00
913 8 0.00
914 1 0.00
915 5 0.00
916 6 0.00
917 14 0.00
918 8 0.00
919 6 0.00
920 9 0.00
921 12 0.00
922 7 0.00
923 11 0.00
924 3 0.00
925 4 0.00
926 2 0.00
927 4 0.00
928 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (815 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTTACAAGCAATCTACTATGCGATAACCCGTT
GTTTGATGAGGTAAACGAACTTAACATCCAAGACATACCACCACCACCGCCATTACCAGCAAACC
CTTCGATGGCATGAGAAGAGCGAAACCTAAGGGATTATGCACTACCAAATCAGGTGATGGTTCAA
GGTAGCATTACAAGGCCAACCATTATGGAAAATAATTTTGAAATAAAATCGACCATGATCTAGAT
GATCCAAAATAATCTGCAATTCAGAGGAACCATGACGGATGACACAAATCAACATCTAAAACGGG
TCCTTCAATTTTCTGATACATTTAAATAAAACGGGGTCATTAATGAAGCTATTCATCTTCGGTTG
TTTCCCGTATCCTTGATCGATATTCGTTTAAGTTA
Found at i:34813352 original size:448 final size:448
Alignment explanation
Indices: 34811976--34814191 Score: 4119
Period size: 448 Copynumber: 4.9 Consensus size: 448
34811966 GTTTAAGTTA
* *
34811976 AAGTTAAAGTTAATTTAGTATTAGCCTTCTTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * *
34812041 TTTAAAAACTATATCACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
* * *
34812106 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
* *
34812171 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* * *
34812236 ATTGTAGATACAATTTTCTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* * * *
34812301 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34812366 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
34812424 AAGTTCAAGTTAATTTAGTATTAGCATTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34812489 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
34812554 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
*
34812619 TGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGG-AATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34812683 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
34812748 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34812813 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
34812871 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34812936 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34813001 TTGCAATATTTACACTCTAGATGTTAGTATGTCTGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
34813066 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34813131 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
*
34813196 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34813261 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34813319 AAGTTCAAGTTAATTTAGTATTATCCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34813384 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
34813449 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
*
34813514 TGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34813579 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
34813644 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34813709 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34813767 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACGCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34813832 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34813897 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
34813962 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34814027 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* * * *
34814092 CTCGTAGTAGTGGAGCAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34814157 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34814192 TGCAAGCAAT
Statistics
Matches: 1726, Mismatches: 41, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
447 437 0.25
448 1289 0.75
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:34814029 original size:896 final size:895
Alignment explanation
Indices: 34811976--34814191 Score: 4198
Period size: 895 Copynumber: 2.5 Consensus size: 895
34811966 GTTTAAGTTA
* *
34811976 AAGTTAAAGTTAATTTAGTATTAGCCTTCTTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
* * *
34812041 TTTAAAAACTATATCACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
34812106 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
34812171 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34812236 ATTGTAGATACAATTTTCTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
34812301 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34812366 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
*
34812431 AGTTAATTTAGTATTAGCATTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
456 AGTTAATTTAGTATTAGCACTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
34812496 ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
521 ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
34812561 ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
586 ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
34812626 AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAATTTATAAATTGTAGA
651 AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAATTTATAAATTGTAGA
34812691 TACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAGT
716 TACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAGT
34812756 AGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCC
781 AGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCC
34812821 ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
846 ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
34812871 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34812936 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34813001 TTGCAATATTTACACTCTAGATGTTAGTATGTCTGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34813066 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
* *
34813131 ATTGTAGATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
* * * *
34813196 CTTGCAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34813261 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
* *
34813326 AGTTAATTTAGTATTATCCCTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
456 AGTTAATTTAGTATTAGCACTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
34813391 ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
521 ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
34813456 ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
586 ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
34813521 AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAAATTGTAG
651 AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGG-AATTTATAAATTGTAG
34813586 ATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAG
715 ATACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAG
34813651 TAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGC
780 TAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGC
34813716 CATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
845 CATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34813767 AAGTTCAAGTTAATTTAGTATTAGCCTCCCTTGGGTTTGATCCTTGGAGTACGCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34813832 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34813897 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34813962 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34814027 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
*
34814092 CTCGTAGTAGTGGAGCAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34814157 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34814192 TGCAAGCAAT
Statistics
Matches: 1288, Mismatches: 32, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
895 678 0.53
896 610 0.47
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.37
Consensus pattern (895 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCTGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGA
CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTTAAGTTCA
AGTTAATTTAGTATTAGCACTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGTTGTAAAA
ACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAGTTGCAAT
ATTTACACTCTAGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCGTGGAGGC
AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAATTTATAAATTGTAGA
TACAATTTTTTTATTGTTACTAACACCTTTTATTTTCTTTTTAGTTTCAGTGTATGTCTTGCAGT
AGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGTCAATAGCC
ATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:34815422 original size:448 final size:448
Alignment explanation
Indices: 34814581--34815901 Score: 2446
Period size: 448 Copynumber: 2.9 Consensus size: 448
34814571 GTTTAAGTTA
34814581 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34814646 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34814711 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
*
34814776 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGATTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34814841 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* *
34814906 CTTGCAGTAGTGGAACAATTATAGAGTGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTTGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34814971 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTGT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTGT
* * *
34815029 AAGTTCAAGTTAATTTAGTATTGGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34815094 TGTAAAAACTATATTACAACCTGAGTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34815159 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34815224 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34815289 ATTGTAGATACAATTTTTTTATTGTTACTAAAATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* * *
34815354 CTTGTAGTAGTGGAACAGTTATAGAGCGGGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
326 CTTGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
*
34815419 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTGT
*
34815477 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGTTCCTTGGAGTACTCACCTACTTCGT
1 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34815542 TGTAAAAACTATATTACAACCTGACTCGTGTACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
*
34815607 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGAGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34815672 AGGAGAG-AACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
196 AGGAG-GCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATA
*
34815736 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTAGG
260 AATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATG
* * *
34815801 ACTCGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTGGAGAGAATAATCTGTAGGAATCG
325 TCTTGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCG
34815866 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
390 TCAATAGCCATAGCAGATGCAAAACCAATCACCTGT
34815902 TGCAAGCAAT
Statistics
Matches: 844, Mismatches: 28, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
448 843 1.00
449 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
CTTGTAGTAGTGGAACAATTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTGT
Found at i:34817133 original size:448 final size:448
Alignment explanation
Indices: 34816292--34817660 Score: 2495
Period size: 448 Copynumber: 3.1 Consensus size: 448
34816282 GTTTAAGTTA
*
34816292 AAGTTAAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34816357 TGTAAAAACTATATTACAGCCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34816422 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* *
34816487 AGGAGGCAACGCTACTGAATTGATTTTAATTTTTTAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
*
34816552 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGG
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* *
34816617 CTCGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAAAGAGAATAATCTGTAGGAATCGT
326 CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
34816682 CAATAGCCATAGCAGATGCAAAACCAATCTCCTGTACTAATTAGATATATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34816740 ATGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGATTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
*
34816805 TGTAAAAACTATATTACAACCTGACTAGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
* *
34816870 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAATGTTTGGTGCCATTGCCC
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
* * * *
34816935 TGGTGGCAACGCTACTAAATTGATTTTAATTTTTGATTTTTATAGGATAATTTGGAAAATTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34817000 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
* * *
34817065 CTTGCAGTAGTGGAACAATTATAGAGTGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
326 CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
34817130 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
* *
34817188 AAGTTCAAGTTAATTTAGTATTGGCCTCCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
1 AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
34817253 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
66 TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
34817318 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
131 TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
34817383 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
196 AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
34817448 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
261 ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
*
34817513 CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTCTAGGAATCGT
326 CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
* *
34817578 CAATAGCCATAGCAGATGCAAAACGAATCACTTGTACTAATTAGATCTATATTCGTTT
391 CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
*
34817636 AAGTTAAAGTTAATTTAGTATTAGC
1 AAGTTCAAGTTAATTTAGTATTAGC
34817661 GCAAGCAATC
Statistics
Matches: 881, Mismatches: 40, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
448 881 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (448 bp):
AAGTTCAAGTTAATTTAGTATTAGCCTTCCTTGGGTTTGATCCTTGGAGTACTCACCTACTTCGT
TGTAAAAACTATATTACAACCTGACTCGTATACTTGCAGACACCACCTCAATTCCATTCATTTAG
TTGCAATATTTACACTCTGGATGTTAGTATGTCCGGAGGCGGTCAAGTGTTTGGTGCCATTGCCG
AGGAGGCAACGCTACTAAATTGATTTTAATTTTTGAGTTTTATAGGATAATTTGGAAATTTATAA
ATTGTAGATACAATTTTTTTATTGTTACTAACATCTTTTATTTTCTTTTTAGTTTCAGTGTATGT
CTTGTAGTAGTGGAACAGTTATAGAGCGAGTCACTGATCTAGAGAGAATAATCTGTAGGAATCGT
CAATAGCCATAGCAGATGCAAAACCAATCACCTGTACTAATTAGATCTATATTCGTTT
Found at i:34821975 original size:24 final size:24
Alignment explanation
Indices: 34821916--34821976 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
34821906 ACCCCAAGCC
34821916 GGAAGGAAATGAGGAAAGGGAAGA
1 GGAAGGAAATGAGGAAAGGGAAGA
*
34821940 --AAGTAAGGATGAGG-AAGGAGAAGA
1 GGAAGGAA--ATGAGGAAAGG-GAAGA
34821964 GGAAGGAAATGAG
1 GGAAGGAAATGAG
34821977 ATGGATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
22 5 0.17
23 4 0.13
24 16 0.53
26 5 0.17
ACGTcount: A:0.49, C:0.00, G:0.44, T:0.07
Consensus pattern (24 bp):
GGAAGGAAATGAGGAAAGGGAAGA
Found at i:34830403 original size:53 final size:53
Alignment explanation
Indices: 34830330--34830432 Score: 170
Period size: 53 Copynumber: 1.9 Consensus size: 53
34830320 AACAATAAAT
* * *
34830330 TATTGAAAATATTCAAATCATATAAGAAATTATTGCAAAATTAATCAATCCCA
1 TATTCAAAAGATTCAAATCATATAAGAAATTATTGCAAAATCAATCAATCCCA
*
34830383 TATTCAAAAGATTCAAATCATATAATAAATTATTGCAAAATCAATCAATC
1 TATTCAAAAGATTCAAATCATATAAGAAATTATTGCAAAATCAATCAATC
34830433 TCATGCATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.32
Consensus pattern (53 bp):
TATTCAAAAGATTCAAATCATATAAGAAATTATTGCAAAATCAATCAATCCCA
Found at i:34834455 original size:25 final size:26
Alignment explanation
Indices: 34834394--34834494 Score: 123
Period size: 26 Copynumber: 3.9 Consensus size: 26
34834384 ACATATTTTC
* *
34834394 TCAAAATTTTACCAGGGGTAAAATCA
1 TCAAAATTTTACCGGGGGTAAAATCG
*
34834420 TCAAAATTTTACTGGGGGTAAAATCG
1 TCAAAATTTTACCGGGGGTAAAATCG
* *
34834446 TCAAAA-TTTACCGAGGGTAAAATTG
1 TCAAAATTTTACCGGGGGTAAAATCG
* **
34834471 TCAAAATATTATTGGGGGTAAAAT
1 TCAAAATTTTACCGGGGGTAAAAT
34834495 AGGGATGAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
25 22 0.34
26 42 0.66
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.30
Consensus pattern (26 bp):
TCAAAATTTTACCGGGGGTAAAATCG
Found at i:34834475 original size:51 final size:52
Alignment explanation
Indices: 34834394--34834494 Score: 143
Period size: 51 Copynumber: 2.0 Consensus size: 52
34834384 ACATATTTTC
*
34834394 TCAAAATTTTACCAGGGGTAAAATCATCAAAATTTTACTGGGGGTAAAATCG
1 TCAAAATTTTACCAGGGGTAAAATCATCAAAATATTACTGGGGGTAAAATCG
** *
34834446 TCAAAA-TTTACC-GAGGGTAAAATTGTCAAAATATTATTGGGGGTAAAAT
1 TCAAAATTTTACCAG-GGGTAAAATCATCAAAATATTACTGGGGGTAAAAT
34834495 AGGGATGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
50 1 0.02
51 37 0.84
52 6 0.14
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.30
Consensus pattern (52 bp):
TCAAAATTTTACCAGGGGTAAAATCATCAAAATATTACTGGGGGTAAAATCG
Found at i:34838410 original size:21 final size:21
Alignment explanation
Indices: 34838381--34838421 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
34838371 ACCTAGTGTC
*
34838381 GTGATATAGCAGGGACATGTA
1 GTGACATAGCAGGGACATGTA
*
34838402 GTGACATAGTAGGGACATGT
1 GTGACATAGCAGGGACATGT
34838422 CACGACATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.10, G:0.34, T:0.24
Consensus pattern (21 bp):
GTGACATAGCAGGGACATGTA
Found at i:34838428 original size:21 final size:21
Alignment explanation
Indices: 34838386--34838433 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
34838376 GTGTCGTGAT
*
34838386 ATAGCAGGGACATGTAGTGAC
1 ATAGCAGGGACATGTAGCGAC
*
34838407 ATAGTAGGGACATGTCA-CGAC
1 ATAGCAGGGACATGT-AGCGAC
34838428 ATAGCA
1 ATAGCA
34838434 TGCAGTTCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (21 bp):
ATAGCAGGGACATGTAGCGAC
Found at i:34840243 original size:22 final size:22
Alignment explanation
Indices: 34840205--34840247 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
34840195 ACTACCATGC
34840205 AAACAATTCATCAAGCATCAACG
1 AAACAATTCATCAAGCA-CAACG
34840228 AAACAA-TCAT-ATAGCACAAC
1 AAACAATTCATCA-AGCACAAC
34840248 CTCATCAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.26
22 8 0.42
23 6 0.32
ACGTcount: A:0.51, C:0.26, G:0.07, T:0.16
Consensus pattern (22 bp):
AAACAATTCATCAAGCACAACG
Found at i:34853078 original size:76 final size:76
Alignment explanation
Indices: 34852986--34853141 Score: 258
Period size: 76 Copynumber: 2.1 Consensus size: 76
34852976 AAGGGAATCA
* *
34852986 AACTTGGGTTAGTTGGAAAGTTTAGCTTGATCTTAACCACTAGGCTAGAACTCTCACTTGTTTAA
1 AACTTGGGTTACTTGGAAAGTTTAGCTTGATCTTAACCACTAGGCTAGAACTCTCACTTGTTCAA
*
34853051 GAATTAATGAT
66 GAATTAACGAT
* * *
34853062 AACTTGGGTTACTTGGAATGTTTAGCTTGCTCTTAACCACTAGGCTAGAACTCTTACTTGTTCAA
1 AACTTGGGTTACTTGGAAAGTTTAGCTTGATCTTAACCACTAGGCTAGAACTCTCACTTGTTCAA
34853127 GAATTAACGAT
66 GAATTAACGAT
34853138 AACT
1 AACT
34853142 AAATATAGAT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (76 bp):
AACTTGGGTTACTTGGAAAGTTTAGCTTGATCTTAACCACTAGGCTAGAACTCTCACTTGTTCAA
GAATTAACGAT
Found at i:34859622 original size:41 final size:41
Alignment explanation
Indices: 34859572--34859730 Score: 187
Period size: 41 Copynumber: 3.9 Consensus size: 41
34859562 TAATACACCT
* *
34859572 GCACGAAGCCTGATA-AAATACACCAGCACGAAGCCTGCTAG
1 GCACAAAGCCTGATATAAA-ACACCAGCATGAAGCCTGCTAG
* *
34859613 GCACAAAGCCTGATATAAAACATC-GATATGAAGCCTGCTAG
1 GCACAAAGCCTGATATAAAACACCAG-CATGAAGCCTGCTAG
* *** *
34859654 GCACAAAGCTTGATATAAAACATTGGCAAGAAGCCTGCTAG
1 GCACAAAGCCTGATATAAAACACCAGCATGAAGCCTGCTAG
* *
34859695 GCACAAAGCCTAATATAATACACCAGCATGAAGCCT
1 GCACAAAGCCTGATATAAAACACCAGCATGAAGCCT
34859731 ACTGGACTCA
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
40 1 0.01
41 95 0.95
42 4 0.04
ACGTcount: A:0.39, C:0.25, G:0.19, T:0.17
Consensus pattern (41 bp):
GCACAAAGCCTGATATAAAACACCAGCATGAAGCCTGCTAG
Found at i:34869649 original size:18 final size:19
Alignment explanation
Indices: 34869621--34869658 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
34869611 TAGTGGAAAA
*
34869621 TTGTATAAAAATCATATTT
1 TTGTATAAAAATCAAATTT
34869640 TTGT-TAAAAATCAAATTT
1 TTGTATAAAAATCAAATTT
34869658 T
1 T
34869659 CATGCATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
TTGTATAAAAATCAAATTT
Found at i:34870707 original size:12 final size:12
Alignment explanation
Indices: 34870683--34870717 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
34870673 AATAGCCTCA
34870683 CAGGCCTGTGTGC
1 CAGGCC-GTGTGC
34870696 CAGGCCGTGTGC
1 CAGGCCGTGTGC
*
34870708 TAGGCCGTGT
1 CAGGCCGTGT
34870718 AATTGCCTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.09, C:0.29, G:0.40, T:0.23
Consensus pattern (12 bp):
CAGGCCGTGTGC
Found at i:34874244 original size:41 final size:41
Alignment explanation
Indices: 34874198--34874356 Score: 196
Period size: 41 Copynumber: 3.9 Consensus size: 41
34874188 GGGTGTTACA
*
34874198 ACCAAAGTACAAATAAGGGAACGTATGTGTAATTCAGGGGT
1 ACCAAAGTACAAATAGGGGAACGTATGTGTAATTCAGGGGT
* * **
34874239 ACCAAAGTACAAACAGGGGCACGTATGTGTAATTTTGGGGT
1 ACCAAAGTACAAATAGGGGAACGTATGTGTAATTCAGGGGT
* * *
34874280 ACCGAAGTACAAATAGGGGAACATATGTGCAATTCAGGGGT
1 ACCAAAGTACAAATAGGGGAACGTATGTGTAATTCAGGGGT
* * * *
34874321 ACCGAAGTAC-AA-AGGGGCATGTATGTGAAATTCAGG
1 ACCAAAGTACAAATAGGGGAACGTATGTGTAATTCAGG
34874357 AAATAATTAA
Statistics
Matches: 102, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 20 0.20
40 2 0.02
41 80 0.78
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (41 bp):
ACCAAAGTACAAATAGGGGAACGTATGTGTAATTCAGGGGT
Found at i:34874301 original size:82 final size:80
Alignment explanation
Indices: 34874202--34874352 Score: 230
Period size: 82 Copynumber: 1.9 Consensus size: 80
34874192 GTTACAACCA
* *
34874202 AAGTACAAATAAGGGAACGTATGTGTAATTCAGGGGTACCAAAGTACAAACAGGGGCACGTATGT
1 AAGTACAAATAAGGGAACATATGTGCAATTCAGGGGTACCAAAGTAC-AA-AGGGGCACGTATGT
*
34874267 GTAATTTTGGGGTACCG
64 GAAATTTTGGGGTACCG
* * *
34874284 AAGTACAAATAGGGGAACATATGTGCAATTCAGGGGTACCGAAGTACAAAGGGGCATGTATGTGA
1 AAGTACAAATAAGGGAACATATGTGCAATTCAGGGGTACCAAAGTACAAAGGGGCACGTATGTGA
34874349 AATT
66 AATT
34874353 CAGGAAATAA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 18 0.29
81 2 0.03
82 43 0.68
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.23
Consensus pattern (80 bp):
AAGTACAAATAAGGGAACATATGTGCAATTCAGGGGTACCAAAGTACAAAGGGGCACGTATGTGA
AATTTTGGGGTACCG
Found at i:34876207 original size:17 final size:17
Alignment explanation
Indices: 34876185--34876218 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34876175 TTTTGAAAAG
34876185 AGATCCAAACGTTTTTC
1 AGATCCAAACGTTTTTC
34876202 AGATCCAAACGTTTTTC
1 AGATCCAAACGTTTTTC
34876219 TTACGCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (17 bp):
AGATCCAAACGTTTTTC
Found at i:34878293 original size:18 final size:18
Alignment explanation
Indices: 34878272--34878307 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
34878262 TACTCGATTT
* *
34878272 TTTTTTTACTTCATATAC
1 TTTTTTTAATTCAAATAC
34878290 TTTTTTTAATTCAAATAC
1 TTTTTTTAATTCAAATAC
34878308 AATTGAACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.58
Consensus pattern (18 bp):
TTTTTTTAATTCAAATAC
Found at i:34880775 original size:40 final size:40
Alignment explanation
Indices: 34880722--34880911 Score: 235
Period size: 40 Copynumber: 4.8 Consensus size: 40
34880712 TATTACCACA
* * * * *
34880722 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
* * *
34880762 CGCACGAATGCCTTC--GTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
*
34880800 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
34880840 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
34880880 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
34880912 TCATTCAAAT
Statistics
Matches: 136, Mismatches: 10, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
38 33 0.24
40 99 0.73
41 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
Found at i:34886913 original size:19 final size:19
Alignment explanation
Indices: 34886889--34886949 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 19
34886879 ATAAGAGAAG
34886889 AGAATAAGAAGGGGAAAAA
1 AGAATAAGAAGGGGAAAAA
34886908 AGAATAA-AAGAGAAGGAAAGAA
1 AGAATAAGAAG-G--GGAAA-AA
*
34886930 GAGAATGAGAA-GGGAAAAA
1 -AGAATAAGAAGGGGAAAAA
34886949 A
1 A
34886950 AAGAGAAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
18 4 0.11
19 10 0.29
20 5 0.14
21 5 0.14
22 3 0.09
23 6 0.17
24 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.31, T:0.05
Consensus pattern (19 bp):
AGAATAAGAAGGGGAAAAA
Found at i:34886959 original size:42 final size:43
Alignment explanation
Indices: 34886884--34886964 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
34886874 AATAGATAAG
* *
34886884 AGAAGAGAATAAGAAGGGGAAAAAAGAATAAAA-GAGAAGGAA
1 AGAAGAGAATAAGAAGGGAAAAAAAGAAGAAAAGGAGAAGGAA
*
34886926 AGAAGAGAATGAGAAGGGAAAAAAA-AGAGAAAAGGAGAA
1 AGAAGAGAATAAGAAGGGAAAAAAAGA-AGAAAAGGAGAA
34886965 AAGGAAGGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 1 0.03
42 28 0.82
43 5 0.15
ACGTcount: A:0.64, C:0.00, G:0.32, T:0.04
Consensus pattern (43 bp):
AGAAGAGAATAAGAAGGGAAAAAAAGAAGAAAAGGAGAAGGAA
Found at i:34889231 original size:14 final size:14
Alignment explanation
Indices: 34889208--34889240 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
34889198 CTATCGATTT
*
34889208 ATATACATGCAAAA
1 ATATAAATGCAAAA
34889222 ATATAAATGCAAAA
1 ATATAAATGCAAAA
34889236 ATATA
1 ATATA
34889241 TATTTGGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.61, C:0.09, G:0.06, T:0.24
Consensus pattern (14 bp):
ATATAAATGCAAAA
Found at i:34889278 original size:27 final size:28
Alignment explanation
Indices: 34889221--34889312 Score: 125
Period size: 28 Copynumber: 3.3 Consensus size: 28
34889211 TACATGCAAA
* *
34889221 AATATAAATGCAAAAATATATA-TTTGGT
1 AATATAAATGCAAAAATACAAACTTT-GT
*
34889249 AATATAAATG-AAAAATACAAACTTTAT
1 AATATAAATGCAAAAATACAAACTTTGT
*
34889276 AATATAAATGCAAAATTACAAACTTTGT
1 AATATAAATGCAAAAATACAAACTTTGT
34889304 AATATAAAT
1 AATATAAAT
34889313 TAGATGCATT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 20 0.35
28 37 0.65
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.33
Consensus pattern (28 bp):
AATATAAATGCAAAAATACAAACTTTGT
Found at i:34890018 original size:51 final size:51
Alignment explanation
Indices: 34889904--34890170 Score: 437
Period size: 51 Copynumber: 5.3 Consensus size: 51
34889894 CTTACGTATG
* *
34889904 ATCACTTATCACTTGTCCCTGATCAGATAAGTGTAGCT-AAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* *
34889954 ATCACTTGCCACTTGTCACTGATCAGATAGGTGTAGCTAAAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
*
34890005 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAACACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* *
34890056 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTATCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* * *
34890107 ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAGCTGAAGCTACTACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
34890158 ATCACTTGTCACT
1 ATCACTTGTCACT
34890171 GATCAGAAGT
Statistics
Matches: 203, Mismatches: 13, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
50 34 0.17
51 169 0.83
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (51 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
Found at i:34891629 original size:15 final size:17
Alignment explanation
Indices: 34891592--34891626 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
34891582 TCAAGAACAT
34891592 AGAACCTTATATAATAA
1 AGAACCTTATATAATAA
34891609 AGAACCTTATATAATAA
1 AGAACCTTATATAATAA
34891626 A
1 A
34891627 ACCCTACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (17 bp):
AGAACCTTATATAATAA
Found at i:34898025 original size:3 final size:3
Alignment explanation
Indices: 34898017--34898060 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
34898007 GTGAGGTAAG
*
34898017 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
34898061 AGATGAGTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:34898479 original size:37 final size:39
Alignment explanation
Indices: 34898420--34898515 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
34898410 TGGATAGATT
* * * *
34898420 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
34898457 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
34898496 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
34898516 TAATGGAGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:34910188 original size:14 final size:15
Alignment explanation
Indices: 34910169--34910202 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
34910159 AGTATTATTT
34910169 ATTAATTAATTTT-A
1 ATTAATTAATTTTCA
34910183 ATTAATTAATTTTCA
1 ATTAATTAATTTTCA
34910198 ATTAA
1 ATTAA
34910203 ATATGTCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTAATTAATTTTCA
Found at i:34911144 original size:6 final size:6
Alignment explanation
Indices: 34911133--34911170 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
34911123 GATTATTTTA
*
34911133 TTATTT TTATTT ATT-GTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT -TTATTT TTATTT TTATTT TTATTT TT
34911171 GCAAAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 2 0.07
6 24 0.86
7 2 0.07
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTATTT
Found at i:34918488 original size:23 final size:23
Alignment explanation
Indices: 34918462--34918508 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
34918452 TGGTTTATGC
* *
34918462 TAATATTGTTACCGTATTGATTT
1 TAATATTGTTACCATACTGATTT
34918485 TAATATTGTTACCATACTGATTT
1 TAATATTGTTACCATACTGATTT
34918508 T
1 T
34918509 GATACTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.51
Consensus pattern (23 bp):
TAATATTGTTACCATACTGATTT
Found at i:34926381 original size:79 final size:79
Alignment explanation
Indices: 34926270--34926492 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 79
34926260 GCTACTCGTT
* * *
34926270 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
34926335 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
*
34926350 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCC-G
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
34926412 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * *
34926427 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
34926491 GA
64 GA
34926493 CATCATTCAA
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
77 27 0.22
78 31 0.25
79 51 0.41
80 16 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:34926387 original size:39 final size:40
Alignment explanation
Indices: 34926270--34926492 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
34926260 GCTACTCGTT
* *
34926270 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
34926310 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
34926350 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
34926389 CAAATGCCTTCGGG-CTTAGCCC-GAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
34926427 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
34926468 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34926493 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
37 2 0.01
38 27 0.16
39 53 0.32
40 69 0.42
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:34937331 original size:27 final size:27
Alignment explanation
Indices: 34937301--34937370 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
34937291 TAAATTTACA
** * *
34937301 GCACTAAGTGTGCGATTCGATTATGTT
1 GCACTAAGTGTGCGAAACGAATATGAT
*
34937328 GCACTAAGTGTGCGAAAGGAATATGAT
1 GCACTAAGTGTGCGAAACGAATATGAT
34937355 GCACTAAGTGTGCGAA
1 GCACTAAGTGTGCGAA
34937371 TGACCATGCG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGAAACGAATATGAT
Found at i:34943023 original size:38 final size:40
Alignment explanation
Indices: 34942880--34943102 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
34942870 GCTACTCGTT
* *
34942880 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
34942920 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
34942960 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
34942999 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
34943037 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
34943078 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34943103 CATCATTCAA
Statistics
Matches: 165, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
38 40 0.24
39 35 0.21
40 77 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:34943062 original size:117 final size:120
Alignment explanation
Indices: 34942880--34943102 Score: 296
Period size: 117 Copynumber: 1.9 Consensus size: 120
34942870 GCTACTCGTT
*
34942880 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
34942945 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
34942999 CAAATGCCTTC-GG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
34943060 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
34943103 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
116 4 0.04
117 55 0.60
118 21 0.23
119 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:34949576 original size:17 final size:17
Alignment explanation
Indices: 34949556--34949593 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
34949546 ATCACCGTCG
34949556 CAAGTCCATCACTACCA
1 CAAGTCCATCACTACCA
* *
34949573 CAAGTCCATCTCTATCA
1 CAAGTCCATCACTACCA
34949590 CAAG
1 CAAG
34949594 CTTACAGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.34, C:0.37, G:0.08, T:0.21
Consensus pattern (17 bp):
CAAGTCCATCACTACCA
Found at i:34951382 original size:20 final size:19
Alignment explanation
Indices: 34951344--34951382 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
34951334 GTAAGGCAGT
*
34951344 ATTTTGCATGAATTTTTAA
1 ATTTTGCAAGAATTTTTAA
*
34951363 ATTTTGCAAGTATGTTTTAA
1 ATTTTGCAAGAAT-TTTTAA
34951383 TCTTTTCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.31, C:0.05, G:0.13, T:0.51
Consensus pattern (19 bp):
ATTTTGCAAGAATTTTTAA
Found at i:34968745 original size:19 final size:19
Alignment explanation
Indices: 34968723--34968760 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
34968713 TCAATCATCC
34968723 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
34968742 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
34968761 AATATTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Done.