Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 127 of 189
Found at i:36415399 original size:17 final size:19
Alignment explanation
Indices: 36415355--36415400 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 19
36415345 TACACAAAAC
36415355 TATTTTTA-AATTTCACTA
1 TATTTTTATAATTTCACTA
36415373 TATCTTTTATAATTTCA-TA
1 TAT-TTTTATAATTTCACTA
36415392 -ATTTTTATA
1 TATTTTTATA
36415401 TACTTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 7 0.27
18 5 0.19
19 7 0.27
20 7 0.27
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTTTATAATTTCACTA
Found at i:36417325 original size:139 final size:139
Alignment explanation
Indices: 36417074--36417345 Score: 508
Period size: 139 Copynumber: 2.0 Consensus size: 139
36417064 GTTAGGAAAT
*
36417074 TTAATTGTTTAGATAGTAATTAAGTAAAAATGATTAATTTGAAAAAAGGAACAAAAGTTGGCTTC
1 TTAATTGTTTAGATAGTAATTAAGTAAAAAGGATTAATTTGAAAAAAGGAACAAAAGTTGGCTTC
*
36417139 TTTTTATTTAAATGGATCAATTAGCTTTTAATAGGTAAATTACTGGACTTAATTTATAATTGTTC
66 TTTTTATTTAAATGGATCAATTAGCTCTTAATAGGTAAATTACTGGACTTAATTTATAATTGTTC
36417204 AATTATAAA
131 AATTATAAA
*
36417213 TTAATTGTTTAGATAGTAATTAAGTAAAAAGGATTAATTTGAAAAAAGTAACAAAAGTTGGCTTC
1 TTAATTGTTTAGATAGTAATTAAGTAAAAAGGATTAATTTGAAAAAAGGAACAAAAGTTGGCTTC
*
36417278 TTTTTATTTAAATGGATCAATTAGCTCTTAATAGGTAAATTATTGGACTTAATTTATAATTGTTC
66 TTTTTATTTAAATGGATCAATTAGCTCTTAATAGGTAAATTACTGGACTTAATTTATAATTGTTC
36417343 AAT
131 AAT
36417346 GACTATTGCA
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 129 1.00
ACGTcount: A:0.40, C:0.06, G:0.14, T:0.40
Consensus pattern (139 bp):
TTAATTGTTTAGATAGTAATTAAGTAAAAAGGATTAATTTGAAAAAAGGAACAAAAGTTGGCTTC
TTTTTATTTAAATGGATCAATTAGCTCTTAATAGGTAAATTACTGGACTTAATTTATAATTGTTC
AATTATAAA
Found at i:36418291 original size:38 final size:38
Alignment explanation
Indices: 36418247--36418347 Score: 166
Period size: 38 Copynumber: 2.7 Consensus size: 38
36418237 ATCCAAATTG
*
36418247 GGTGTTATTCAGGCTTAGTGCCTAGTAGGCTTCATGCT
1 GGTGTTATTCAGGCTTAGTGCCTAGTAGGCTTCATGCC
* * *
36418285 GGTGTTATTCAAGCTTAATGCCTAGTAGGCTTCATTCC
1 GGTGTTATTCAGGCTTAGTGCCTAGTAGGCTTCATGCC
36418323 GGTGTTATTCAGGCTTAGTGCCTAG
1 GGTGTTATTCAGGCTTAGTGCCTAG
36418348 CAGGTTTCGT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 57 1.00
ACGTcount: A:0.18, C:0.19, G:0.27, T:0.37
Consensus pattern (38 bp):
GGTGTTATTCAGGCTTAGTGCCTAGTAGGCTTCATGCC
Found at i:36423086 original size:44 final size:44
Alignment explanation
Indices: 36423028--36423117 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 44
36423018 AAATTATGTG
*
36423028 TGCTTAATTCTTGGTTTAATATTTCTAGACTATTGATCCAAATT
1 TGCTTAATTATTGGTTTAATATTTCTAGACTATTGATCCAAATT
* *
36423072 TGCTTAGTTATTGGTTTAATATTTCTAGACTATTGATCCAACTT
1 TGCTTAATTATTGGTTTAATATTTCTAGACTATTGATCCAAATT
36423116 TG
1 TG
36423118 ACTTGCTTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (44 bp):
TGCTTAATTATTGGTTTAATATTTCTAGACTATTGATCCAAATT
Found at i:36423105 original size:22 final size:22
Alignment explanation
Indices: 36423038--36423106 Score: 70
Period size: 22 Copynumber: 3.1 Consensus size: 22
36423028 TGCTTAATTC
36423038 TTGGTTTAATATTTCTAGACTA
1 TTGGTTTAATATTTCTAGACTA
* ** *
36423060 TTGATCCAA-ATTTGCTTAG-TTA
1 TTGGTTTAATATTT-C-TAGACTA
36423082 TTGGTTTAATATTTCTAGACTA
1 TTGGTTTAATATTTCTAGACTA
36423104 TTG
1 TTG
36423107 ATCCAACTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
21 7 0.20
22 21 0.60
23 7 0.20
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.49
Consensus pattern (22 bp):
TTGGTTTAATATTTCTAGACTA
Found at i:36426775 original size:45 final size:45
Alignment explanation
Indices: 36426726--36427107 Score: 410
Period size: 45 Copynumber: 8.6 Consensus size: 45
36426716 ATCAAACGAG
* *
36426726 TAAGACCATAGTTGAAGGACACCATGGCACTATATCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAATGAA
*
36426771 TAAGACC-------AAAGACACTATGGAACTATATCGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAATGAA
* * *
36426809 TAAGACCATAGTTAAAAGACACTATGACACTATA-CAGGAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATC-GAAAATGAA
* * *
36426854 TAAGACCATAGTTGAAAGAAACTATGACACTATA-CTGGAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATC-GAAAATGAA
* *
36426899 TAAGACCATAGTTGAAAGACACTATGGCACTAAATCAAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAATGAA
* * * * * *
36426944 TAAGACCATAGTTGAAAGACAATACGGAACTATA-CCAAACTCAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAAT-GAA
* *
36426989 TAAGACCATAGTTGAAAGACAAC-ATGGCACTATACCGAAATTGAA
1 TAAGACCATAGTTGAAAGAC-ACTATGGCACTATATCGAAAATGAA
* * * * *
36427034 TAAGACCATAGTTGAAAAACATTATGGAAATATGAT-GAAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTAT-ATCGAAAATGAA
*
36427079 TAAGACCATAGTTGAAAAACACTATGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
36427108 TCATGTTGGA
Statistics
Matches: 287, Mismatches: 36, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
38 35 0.12
44 7 0.02
45 237 0.83
46 8 0.03
ACGTcount: A:0.48, C:0.15, G:0.16, T:0.20
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATATCGAAAATGAA
Found at i:36426796 original size:38 final size:38
Alignment explanation
Indices: 36426743--36426816 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
36426733 ATAGTTGAAG
*
36426743 GACACCATGGCACTATATCGAAAATGAATAAGACCAAA
1 GACACCATGGAACTATATCGAAAATGAATAAGACCAAA
*
36426781 GACACTATGGAACTATATCGAAAATGAATAAGACCA
1 GACACCATGGAACTATATCGAAAATGAATAAGACCA
36426817 TAGTTAAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.18
Consensus pattern (38 bp):
GACACCATGGAACTATATCGAAAATGAATAAGACCAAA
Found at i:36426894 original size:24 final size:24
Alignment explanation
Indices: 36426823--36426894 Score: 62
Period size: 24 Copynumber: 3.1 Consensus size: 24
36426813 ACCATAGTTA
* *
36426823 AAAGACACTATGACACTATACAGG
1 AAAGAAACTATGACACTATACTGG
* * *
36426847 AAATG-AA-TAAGAC-C-ATAGTTG
1 AAA-GAAACTATGACACTATACTGG
36426868 AAAGAAACTATGACACTATACTGG
1 AAAGAAACTATGACACTATACTGG
36426892 AAA
1 AAA
36426895 TGAATAAGAC
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
20 1 0.03
21 9 0.26
22 6 0.17
23 6 0.17
24 12 0.34
25 1 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (24 bp):
AAAGAAACTATGACACTATACTGG
Found at i:36426915 original size:21 final size:21
Alignment explanation
Indices: 36426802--36426915 Score: 70
Period size: 21 Copynumber: 5.1 Consensus size: 21
36426792 ACTATATCGA
36426802 AAATGAATAAGACCATAGTT-
1 AAATGAATAAGACCATAGTTG
* * ***
36426822 AAAAGACACTATGACACTATACAGG
1 AAATGA-A-TAAGAC-C-ATAGTTG
36426847 AAATGAATAAGACCATAGTTG
1 AAATGAATAAGACCATAGTTG
* * *
36426868 AAA-GAAACTATGACACTATACTGG
1 AAATG-AA-TAAGAC-C-ATAGTTG
36426892 AAATGAATAAGACCATAGTTG
1 AAATGAATAAGACCATAGTTG
36426913 AAA
1 AAA
36426916 GACACTATGG
Statistics
Matches: 68, Mismatches: 16, Indels: 19
0.66 0.16 0.18
Matches are distributed among these distances:
20 6 0.09
21 18 0.26
22 12 0.18
23 12 0.18
24 14 0.21
25 6 0.09
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (21 bp):
AAATGAATAAGACCATAGTTG
Found at i:36429881 original size:20 final size:19
Alignment explanation
Indices: 36429853--36429902 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
36429843 ATTACAAAAT
36429853 AATTCAAAATAA-TTTTCAAA
1 AATTCAAAATAACTTTT--AA
* *
36429873 AATTTAAAAAAACTTTTAA
1 AATTCAAAATAACTTTTAA
36429892 AATTCAAAATA
1 AATTCAAAATA
36429903 TTTATAAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 11 0.44
20 10 0.40
21 4 0.16
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (19 bp):
AATTCAAAATAACTTTTAA
Found at i:36430574 original size:27 final size:27
Alignment explanation
Indices: 36430544--36430690 Score: 136
Period size: 27 Copynumber: 5.5 Consensus size: 27
36430534 GAGTTTGCCG
36430544 CAAAGGCGTTCCTTTCATATTGCGCCA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
* *
36430571 CAAAGGCGTTCCTTTTATATTGTGCCA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
* * * **
36430598 CAAAGGTGTTCTTTTAATATTGCATCA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
* * *
36430625 CAAA--TGTTCTTTTCATATTGTGCCA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
** * * *
36430650 CAAAGGCACTCTTTTCATATTGCACTA
1 CAAAGGCGTTCCTTTCATATTGCGCCA
*
36430677 CAAAGGCATTCCTT
1 CAAAGGCGTTCCTT
36430691 ATCTATCATG
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
25 21 0.21
27 77 0.79
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (27 bp):
CAAAGGCGTTCCTTTCATATTGCGCCA
Found at i:36436649 original size:61 final size:61
Alignment explanation
Indices: 36436597--36436784 Score: 156
Period size: 61 Copynumber: 3.1 Consensus size: 61
36436587 TTATAGTATT
36436597 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
1 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
* * * * ** ** *
36436658 ATATATT-TTA-ATTAAAATATATTTA-ATATTAATCATTTCAA-ATT-A-TCTTTTA-TAGTAT
1 ATATATTATGATTTTAGAA-A-ATTCATATAAGAAT-ATTT-AATATTAAGAATTTTATTA-AAT
36436716 C
61 C
* * * * *
36436717 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
36436778 ATATATT
1 ATATATT
36436785 TTAATTAAAA
Statistics
Matches: 92, Mismatches: 23, Indels: 24
0.66 0.17 0.17
Matches are distributed among these distances:
58 3 0.03
59 30 0.33
60 20 0.22
61 35 0.38
62 4 0.04
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (61 bp):
ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
Found at i:36436745 original size:120 final size:120
Alignment explanation
Indices: 36436532--36436806 Score: 426
Period size: 120 Copynumber: 2.3 Consensus size: 120
36436522 AGTATGATGA
* ** * * *
36436532 TAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 TAAATTATATATTTTAATTAAAATATATTTAATATTAATCATGTTAAATTATATTTTATAGTATC
* *
36436597 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTAT
66 ATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTAT
* *
36436652 TAAATCATATATTTTAATTAAAATATATTTAATATTAATCAT-TTCAAATTATCTTTTATAGTAT
1 TAAATTATATATTTTAATTAAAATATATTTAATATTAATCATGTT-AAATTATATTTTATAGTAT
* *
36436716 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
65 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTAT
36436772 TAAATTATATATTTTAATTAAAATATATTTAATAT
1 TAAATTATATATTTTAATTAAAATATATTTAATAT
36436807 ATTTAATAAT
Statistics
Matches: 141, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
119 2 0.01
120 139 0.99
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
TAAATTATATATTTTAATTAAAATATATTTAATATTAATCATGTTAAATTATATTTTATAGTATC
ATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTAT
Found at i:36436781 original size:59 final size:59
Alignment explanation
Indices: 36436598--36436781 Score: 130
Period size: 64 Copynumber: 3.1 Consensus size: 59
36436588 TATAGTATTA
* *
36436598 TATATTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATA-TTAATTATTAAGAATTTTATTAAAT
* * * ** * * *
36436657 CATA-TAT--TTTAATTAAAAT-ATAT-TTAATATTAATCATTTCA-AATTATCTTTTATAGTAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATTAATTA-TTAAGAATT-T-TATTA-A--AT
* *
36436716 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
36436777 TATAT
1 TATAT
36436782 ATTTTAATTA
Statistics
Matches: 90, Mismatches: 20, Indels: 30
0.64 0.14 0.21
Matches are distributed among these distances:
53 4 0.04
54 9 0.10
55 8 0.09
56 12 0.13
57 1 0.01
58 3 0.03
59 10 0.11
61 5 0.06
62 3 0.03
63 1 0.01
64 13 0.14
65 8 0.09
66 13 0.14
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (59 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
Found at i:36436793 original size:18 final size:17
Alignment explanation
Indices: 36436765--36436799 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36436755 ATTATTAAGA
*
36436765 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
36436782 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
36436800 TTAATATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:36437019 original size:44 final size:45
Alignment explanation
Indices: 36436970--36437064 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
36436960 TTACACATCT
* *
36436970 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
36437014 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
36437059 ATTACA
1 ATTACA
36437065 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:36437064 original size:16 final size:16
Alignment explanation
Indices: 36437045--36437096 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
36437035 GATTTGCTAT
* *
36437045 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
36437061 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36437077 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36437093 TACA
1 TACA
36437097 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:36438015 original size:119 final size:119
Alignment explanation
Indices: 36437822--36438172 Score: 684
Period size: 119 Copynumber: 2.9 Consensus size: 119
36437812 TTGTGGGAAC
36437822 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
1 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
36437887 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTATGGGAGT
66 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTATGGGAGT
36437941 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
1 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
*
36438006 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAAGACTTTTTCTTTATGGGAGT
66 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTATGGGAGT
36438060 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
1 CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
*
36438125 TTGTGAAATCTTTCTCGATTTCAAGGCTTCTTAGGACTTTTTCTTTAT
66 TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTAT
36438173 TTTCTTGCTG
Statistics
Matches: 229, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 229 1.00
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (119 bp):
CATCTTCAGCCTTCTTCTTGCCATTGTCCTACATTGGAGGGGAGATTAGAGCCGTTTGAAGGGAG
TTGTGAAATCTTTCTCAATTTCAAGGCTTCTTAGGACTTTTTCTTTATGGGAGT
Found at i:36438985 original size:60 final size:60
Alignment explanation
Indices: 36438919--36439039 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
36438909 AGTTGATAAA
36438919 TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
1 TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
36438979 TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
1 TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
36439039 T
1 T
36439040 GAAAATCCAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (60 bp):
TTCCTTTTATTATATAAAAATATTACAAAATTAATTTTATAATTAAATAAAAGCTTGGTT
Found at i:36440366 original size:19 final size:19
Alignment explanation
Indices: 36440324--36440429 Score: 85
Period size: 19 Copynumber: 5.7 Consensus size: 19
36440314 ATCTCTCAAC
*
36440324 AAAAATTATAAAAGATTTTCA
1 AAAAATTAT-AAA-ATTTTTA
* *
36440345 AATATTTATAAAATTTTT-
1 AAAAATTATAAAATTTTTA
* *
36440363 --AAATT-TTATATTTTTA
1 AAAAATTATAAAATTTTTA
*
36440379 AAAAATTATAATATTTTTA
1 AAAAATTATAAAATTTTTA
* *
36440398 AAAAATTATAAAAATTCTA
1 AAAAATTATAAAATTTTTA
*
36440417 AAAAATTCTAAAA
1 AAAAATTATAAAA
36440430 AAATTAAATT
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
15 8 0.12
16 3 0.04
18 5 0.07
19 43 0.62
20 3 0.04
21 7 0.10
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (19 bp):
AAAAATTATAAAATTTTTA
Found at i:36440411 original size:10 final size:10
Alignment explanation
Indices: 36440377--36440431 Score: 51
Period size: 10 Copynumber: 5.7 Consensus size: 10
36440367 TTTATATTTT
36440377 TAAAAAATTA
1 TAAAAAATTA
* * *
36440387 T-AATATTTT
1 TAAAAAATTA
36440396 TAAAAAATTA
1 TAAAAAATTA
*
36440406 T-AAAAATTC
1 TAAAAAATTA
*
36440415 TAAAAAATTC
1 TAAAAAATTA
36440425 TAAAAAA
1 TAAAAAA
36440432 ATTAAATTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
9 14 0.39
10 22 0.61
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:36440434 original size:11 final size:10
Alignment explanation
Indices: 36440396--36440431 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
36440386 ATAATATTTT
*
36440396 TAAAAAATTA
1 TAAAAAATTC
36440406 T-AAAAATTC
1 TAAAAAATTC
36440415 TAAAAAATTC
1 TAAAAAATTC
36440425 TAAAAAA
1 TAAAAAA
36440432 ATTAAATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAAAATTC
Found at i:36440437 original size:19 final size:18
Alignment explanation
Indices: 36440376--36440437 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 18
36440366 TTTTATATTT
***
36440376 TTAAAAAATTATAATATTT
1 TTAAAAAATTATAA-AAAA
*
36440395 TTAAAAAATTATAAAAAT
1 TTAAAAAATTATAAAAAA
*
36440413 TCTAAAAAATTCTAAAAAAA
1 T-TAAAAAATTAT-AAAAAA
36440433 TTAAA
1 TTAAA
36440438 TTCAAGTCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 3 0.08
19 28 0.76
20 6 0.16
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAAAATTATAAAAAA
Found at i:36449310 original size:16 final size:16
Alignment explanation
Indices: 36449291--36449333 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
36449281 TATTAATGTT
36449291 AAATTTTATTATTAAA
1 AAATTTTATTATTAAA
* *
36449307 AAATTGTAATATTAAA
1 AAATTTTATTATTAAA
* *
36449323 TAACTTTATTA
1 AAATTTTATTA
36449334 AAATAATAAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (16 bp):
AAATTTTATTATTAAA
Found at i:36449457 original size:9 final size:8
Alignment explanation
Indices: 36449429--36449454 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
36449419 AATTATAATA
36449429 TTAATATT
1 TTAATATT
36449437 TTAATATT
1 TTAATATT
36449445 TTAATATT
1 TTAATATT
36449453 TT
1 TT
36449455 TAAATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
TTAATATT
Found at i:36450991 original size:15 final size:16
Alignment explanation
Indices: 36450971--36451003 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
36450961 AATTGGTTCT
*
36450971 AATAATTGA-AAATTA
1 AATAATTCATAAATTA
36450986 AATAATTCATAAATTA
1 AATAATTCATAAATTA
36451002 AA
1 AA
36451004 AAGAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (16 bp):
AATAATTCATAAATTA
Found at i:36451161 original size:7 final size:7
Alignment explanation
Indices: 36451149--36451178 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
36451139 TTTTTGTTAT
36451149 TTTTAAA
1 TTTTAAA
36451156 TTTTAAA
1 TTTTAAA
36451163 TTTTAAA
1 TTTTAAA
36451170 TTTTGAAA
1 TTTT-AAA
36451178 T
1 T
36451179 AAGATAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.82
8 4 0.18
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (7 bp):
TTTTAAA
Found at i:36455041 original size:5 final size:5
Alignment explanation
Indices: 36455011--36455107 Score: 96
Period size: 5 Copynumber: 19.6 Consensus size: 5
36455001 AATCATAAAG
* * *
36455011 TATAT TATTAT TGTTAT TAT-T T-TAT TATAT TATAAAT TAAAT T-GAT
1 TATAT TA-TAT T-ATAT TATAT TATAT TATAT TAT--AT TATAT TATAT
36455057 TATA- T-TAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
36455105 TAT
1 TAT
36455108 GAAATAAATT
Statistics
Matches: 78, Mismatches: 5, Indels: 18
0.77 0.05 0.18
Matches are distributed among these distances:
3 3 0.04
4 9 0.12
5 54 0.69
6 8 0.10
7 4 0.05
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:36455222 original size:33 final size:34
Alignment explanation
Indices: 36455176--36455239 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
36455166 AAATGAGTAC
*
36455176 ATTTGTATTATTTA-TATATAGTTAGTAAAAAGAT
1 ATTTGTATTATTTATTAT-TAATTAGTAAAAAGAT
36455210 ATTT-TATTATTTATTATTAATTAGTAAAAA
1 ATTTGTATTATTTATTATTAATTAGTAAAAA
36455240 AATTTATATG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 21 0.75
34 7 0.25
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (34 bp):
ATTTGTATTATTTATTATTAATTAGTAAAAAGAT
Found at i:36455364 original size:3 final size:3
Alignment explanation
Indices: 36455356--36455413 Score: 50
Period size: 3 Copynumber: 20.0 Consensus size: 3
36455346 AAATAGATAT
* * * *
36455356 TTA TTA TTA TTA TTA TTA TAA TTA CTG TTA TTA TTA TT- TAA TTGA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
36455401 -TA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA
36455414 GATTAATGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
2 4 0.09
3 38 0.88
4 1 0.02
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:36455368 original size:24 final size:24
Alignment explanation
Indices: 36455328--36455413 Score: 61
Period size: 24 Copynumber: 3.5 Consensus size: 24
36455318 TACATTTGTA
*
36455328 ATATTTA-TATTTGTTATTAAATAG
1 ATATTTATTA-TTATTATTAAATAG
*
36455352 ATATTTATTATTATTATTATTATA-
1 ATATTTATTATTATTATTA-AATAG
* * * *
36455376 AT-TACTGTTATTATTATTTAATTG
1 ATAT-TTATTATTATTATTAAATAG
36455400 ATATTATATTATTA
1 ATATT-TATTATTA
36455414 GATTAATGAA
Statistics
Matches: 47, Mismatches: 9, Indels: 11
0.70 0.13 0.16
Matches are distributed among these distances:
23 3 0.06
24 31 0.66
25 13 0.28
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.58
Consensus pattern (24 bp):
ATATTTATTATTATTATTAAATAG
Found at i:36455595 original size:16 final size:15
Alignment explanation
Indices: 36455579--36455609 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
36455569 AACAAAAAGA
36455579 AATAGAAAGAAACAG
1 AATAGAAAGAAACAG
36455594 AATAGAAACGAAACAG
1 AATAGAAA-GAAACAG
36455610 GGAGAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.65, C:0.10, G:0.19, T:0.06
Consensus pattern (15 bp):
AATAGAAAGAAACAG
Found at i:36455599 original size:15 final size:16
Alignment explanation
Indices: 36455566--36455609 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
36455556 AAGCATAAAA
*
36455566 AGAAAC-AAAAAGAAAT
1 AGAAACGAAACAG-AAT
36455582 AGAAA-GAAACAGAAT
1 AGAAACGAAACAGAAT
36455597 AGAAACGAAACAG
1 AGAAACGAAACAG
36455610 GGAGAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.68, C:0.09, G:0.18, T:0.05
Consensus pattern (16 bp):
AGAAACGAAACAGAAT
Found at i:36455615 original size:26 final size:25
Alignment explanation
Indices: 36455562--36455648 Score: 77
Period size: 26 Copynumber: 3.4 Consensus size: 25
36455552 ATGAAAGCAT
* * **
36455562 AAAAAGAAACAAAAAGAAATAGAAAG
1 AAAAAGAAA-GAAAAGAAAAAGGGAG
* * *
36455588 AAACAGAATAGAAACGAAACAGGGAG
1 AAAAAGAA-AGAAAAGAAAAAGGGAG
36455614 AAAAAGAAAGAAAAGAAAAAGGGA-
1 AAAAAGAAAGAAAAGAAAAAGGGAG
36455638 AATAAAGAAAG
1 AA-AAAGAAAG
36455649 GAGAAATAGA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
24 2 0.04
25 22 0.44
26 25 0.50
27 1 0.02
ACGTcount: A:0.70, C:0.05, G:0.22, T:0.03
Consensus pattern (25 bp):
AAAAAGAAAGAAAAGAAAAAGGGAG
Found at i:36462479 original size:23 final size:24
Alignment explanation
Indices: 36462453--36462498 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
36462443 TTTTGTTTGC
*
36462453 AAAATCA-AAGTTTTCTTAAAAAA
1 AAAATCACAACTTTTCTTAAAAAA
* *
36462476 AAAATTACTACTTTTCTTAAAAA
1 AAAATCACAACTTTTCTTAAAAA
36462499 TCAAAGCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.35
Consensus pattern (24 bp):
AAAATCACAACTTTTCTTAAAAAA
Found at i:36467339 original size:23 final size:23
Alignment explanation
Indices: 36467313--36467364 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
36467303 TGATTTTTAA
* *
36467313 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTAATAAT
36467336 ATTTAGAATTATTTAGTAATAAT
1 ATTTAGAATTATTTAGTAATAAT
36467359 ATTTAG
1 ATTTAG
36467365 GTAAAATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTAATAAT
Found at i:36468230 original size:5 final size:5
Alignment explanation
Indices: 36468220--36468245 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
36468210 TTCAAATCTA
36468220 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
36468246 ACACTTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:36475604 original size:23 final size:23
Alignment explanation
Indices: 36475578--36475629 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
36475568 TGATTTTTAA
*
36475578 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
36475601 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
36475624 ATTTAG
1 ATTTAG
36475630 GTAAAATCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:36475605 original size:13 final size:13
Alignment explanation
Indices: 36475587--36475629 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
36475577 AATTTTGAAT
36475587 TATTTAGTGATAA
1 TATTTAGTGATAA
*
36475600 TATTTA--GA-AT
1 TATTTAGTGATAA
36475610 TATTTAGTGATAA
1 TATTTAGTGATAA
36475623 TATTTAG
1 TATTTAG
36475630 GTAAAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.28
11 2 0.08
12 2 0.08
13 14 0.56
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:36480716 original size:70 final size:70
Alignment explanation
Indices: 36480618--36480817 Score: 258
Period size: 70 Copynumber: 2.9 Consensus size: 70
36480608 AGCTGACGAT
* *** *
36480618 TAAGGCTCGCAAGTTCAATACTACAGCCTAGAAAACAATTAGCGCGAGCTTACGCTCCCAGCTAA
1 TAAGGCTCGCAGGTTCAATACTACAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCAGCTAA
*
36480683 TATCC
66 TATCA
* * * * * *
36480688 TAAGGCTCACAGGTTCAATACCACAGCCTCCCAAACAGTTAGTGCGAG-TCTACGCTCCTAGTTG
1 TAAGGCTCGCAGGTTCAATACTACAGCCTCCCAAACAGTTAGCGCGAGCT-TACGCTCCCAGCTA
36480752 ATATCA
65 ATATCA
* *
36480758 TAAGGCTCGCAGGTTCAATATTGCAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCA
1 TAAGGCTCGCAGGTTCAATACTACAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCA
36480818 ACTGGTATTT
Statistics
Matches: 110, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
69 1 0.01
70 108 0.98
71 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (70 bp):
TAAGGCTCGCAGGTTCAATACTACAGCCTCCCAAACAGTTAGCGCGAGCTTACGCTCCCAGCTAA
TATCA
Found at i:36481496 original size:9 final size:9
Alignment explanation
Indices: 36481482--36481510 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
36481472 GTCGAAATTC
36481482 TTTTATTAT
1 TTTTATTAT
36481491 TTTTATTAT
1 TTTTATTAT
36481500 TTTTATTAT
1 TTTTATTAT
36481509 TT
1 TT
36481511 AGGGTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTATTAT
Found at i:36483158 original size:70 final size:70
Alignment explanation
Indices: 36482454--36483194 Score: 591
Period size: 70 Copynumber: 10.6 Consensus size: 70
36482444 CCCCCTATCA
* * * * * * **
36482454 CGCAGCCTCCAAAATAGTTAGCACGAGCCTACGCTCCTAGTTGATATCTTAAGGCTTGCAAATTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
36482519 AATAC
66 AATAC
* ** * * ** *
36482524 TGCAGCCTAAAAAACAGTTAGTGCGAGCCTACGCTCCTAGCTGGTATCTTAAGGCTTACAAGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
36482589 AATAC
66 AATAC
** * * ** ** **
36482594 AACAACCTTCAAAACAGTTAGCGCGAGCCTATACTCATAGCTGGTATCTTAAGGCTCATAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
*
36482659 AATAT
66 AATAC
* * * * * * *
36482664 CGCAACCTTCAACACAGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGATCGCAAGTTT
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
36482729 AATAC
66 AATAC
* * * * * *
36482734 CTCAGCCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAGCTGGTATCCTAAGGCTTGCAGGTCC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
36482799 AATAC
66 AATAC
* ** * ** * * ** * * *
36482804 CGTAGCCTTTAAAACAATTAAAGCGAGCTTACACTCCCAATTGGCATCTTAAAGCTTGCAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
36482869 AATAC
66 AATAC
* * * ** ** ** *
36482874 CGCAGCTTCTAAAAAAGTTAGCATGAGCCTACATTCCCAATTGATATCTTAAGGCTCGCAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
36482939 AATAC
66 AATAC
* * * * ** ** * * **
36482944 CGCAGCTTCTAAAAAAGTTAGCGCGAACCTACATTCCCAATTGATATCCTAAGGCTCGTGGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
36483009 AATAC
66 AATAC
* * * * * * * *
36483014 CGTAGCCTCCAAAATAGTTAACGCGAGCTTATGTTCCCAACTGGTATCCTAAGGCTCGCAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
*
36483079 AATAT
66 AATAC
* * * * * * * * *
36483084 CGTAGCCTCCAAAATAGTTAGTGTGAGCTTACGCTCCTAGCTGGTATTTTAAAGCTCACAGGTTC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
36483149 AATAC
66 AATAC
* * ** * *
36483154 CGTAGCCTCCTAAACAGTTAGCATGAGCTTACGTTCCCAGC
1 CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGC
36483195 CGATATTATA
Statistics
Matches: 551, Mismatches: 120, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
70 551 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (70 bp):
CGCAGCCTCCAAAACAGTTAGCGCGAGCCTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
AATAC
Found at i:36487307 original size:15 final size:15
Alignment explanation
Indices: 36487287--36487323 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
36487277 TTGATTGTTG
36487287 TGAGAAGTTTGGTAA
1 TGAGAAGTTTGGTAA
36487302 TGAGAAGTTTGGTAA
1 TGAGAAGTTTGGTAA
36487317 TGAGAAG
1 TGAGAAG
36487324 GTGCATGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.30
Consensus pattern (15 bp):
TGAGAAGTTTGGTAA
Found at i:36491473 original size:23 final size:22
Alignment explanation
Indices: 36491421--36491473 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
36491411 TCCACGTCTT
*
36491421 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
36491443 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
36491466 TTTCTTTT
1 TTTCTTTT
36491474 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:36500048 original size:19 final size:19
Alignment explanation
Indices: 36500026--36500065 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36500016 TCATTTTAGA
* *
36500026 TAATTTATGTTATTTTGGT
1 TAATTAATGTTAATTTGGT
*
36500045 TAATTAATTTTAATTTGGT
1 TAATTAATGTTAATTTGGT
36500064 TA
1 TA
36500066 TTCATAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (19 bp):
TAATTAATGTTAATTTGGT
Found at i:36501248 original size:49 final size:51
Alignment explanation
Indices: 36501106--36501312 Score: 247
Period size: 55 Copynumber: 3.9 Consensus size: 51
36501096 GCATATTAGT
* * *
36501106 ATTCATAAATAAAGTTGTGCTTTTGTTTATTTATGTTTCATTGAATGTTTTCTTGC
1 ATTCATAAATAAAG-TGTG---TT-TTTATTTATGCTTCATTGATTGTTTTGTTGC
*
36501162 ATTCATAAATAAAGTTGTGTTTTCTTTATTTAAGCTTCATTGATTGTTTTGTTGC
1 ATTCATAAATAAAG-TGTG--TT-TTTATTTATGCTTCATTGATTGTTTTGTTGC
36501217 ATTCATAAATAAAGT-TG-TTTTATTTATGCTTCATTGATTGTTTTGTTGC
1 ATTCATAAATAAAGTGTGTTTTTATTTATGCTTCATTGATTGTTTTGTTGC
* * *
36501266 ATTCAGAAATAAAGTGGTGTTTTTAATTATGCTTCATTGTTTGTTTT
1 ATTCATAAATAAAGT-GTGTTTTTATTTATGCTTCATTGATTGTTTT
36501313 TTGATCGGCT
Statistics
Matches: 139, Mismatches: 9, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
49 44 0.32
50 1 0.01
51 2 0.01
52 25 0.18
53 2 0.01
54 1 0.01
55 45 0.32
56 19 0.14
ACGTcount: A:0.24, C:0.08, G:0.15, T:0.53
Consensus pattern (51 bp):
ATTCATAAATAAAGTGTGTTTTTATTTATGCTTCATTGATTGTTTTGTTGC
Found at i:36502701 original size:11 final size:12
Alignment explanation
Indices: 36502685--36502726 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
36502675 GAATTCAATC
36502685 ATTCAATGGAG-
1 ATTCAATGGAGA
36502696 ATTCAATGGATGA
1 ATTCAATGGA-GA
* *
36502709 ATTTAATGGAGT
1 ATTCAATGGAGA
36502721 ATTCAA
1 ATTCAA
36502727 GATGGAAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 10 0.38
12 7 0.27
13 9 0.35
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.33
Consensus pattern (12 bp):
ATTCAATGGAGA
Found at i:36505921 original size:11 final size:11
Alignment explanation
Indices: 36505892--36505930 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
36505882 AATGATGAGA
* *
36505892 ATGAATGAGGA
1 ATGATTGAGGG
36505903 ATGATTGAGGG
1 ATGATTGAGGG
*
36505914 ATGCTTGAGGG
1 ATGATTGAGGG
36505925 ATGATT
1 ATGATT
36505931 AATGAAGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.31, C:0.03, G:0.38, T:0.28
Consensus pattern (11 bp):
ATGATTGAGGG
Found at i:36506075 original size:14 final size:14
Alignment explanation
Indices: 36506047--36506075 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
36506037 GCTTAGTTGC
36506047 TTTTGACTTGATTT
1 TTTTGACTTGATTT
36506061 TTTTG-CTTGATTT
1 TTTTGACTTGATTT
36506074 TT
1 TT
36506076 AAGCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (14 bp):
TTTTGACTTGATTT
Found at i:36514691 original size:50 final size:50
Alignment explanation
Indices: 36514598--36514845 Score: 298
Period size: 50 Copynumber: 4.8 Consensus size: 50
36514588 TTTTTTGTAT
* * * **
36514598 TGCCAATGCCATATCCCAGATATGGTTTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** **
36514648 TGCCCATGCCATGTCCCAGACATTGTCTTACGGGGGACCTCTCATCCCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
36514698 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
36514748 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
*
36514804 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36514846 TTACCCAAAT
Statistics
Matches: 169, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
50 126 0.75
53 2 0.01
56 41 0.24
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:36515419 original size:12 final size:12
Alignment explanation
Indices: 36515402--36515427 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36515392 TTATACCATA
36515402 AAACATCAAAAT
1 AAACATCAAAAT
36515414 AAACATCAAAAT
1 AAACATCAAAAT
36515426 AA
1 AA
36515428 GCTCTTTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACATCAAAAT
Found at i:36519278 original size:16 final size:15
Alignment explanation
Indices: 36519253--36519286 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
36519243 AAAGCTGATA
*
36519253 ATAATTAATATATATT
1 ATAATAAATATA-ATT
36519269 ATAATAAATATAATT
1 ATAATAAATATAATT
36519284 ATA
1 ATA
36519287 TATTAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:36519286 original size:22 final size:20
Alignment explanation
Indices: 36519250--36519296 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
36519240 AATAAAGCTG
36519250 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
36519269 ATAATAAATATAATTATATATTA
1 ATAAT-AAT-TAA-TATATATTA
36519292 ATAAT
1 ATAAT
36519297 TATCTTCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.21
20 3 0.12
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:36519410 original size:30 final size:30
Alignment explanation
Indices: 36519354--36519414 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
36519344 CTTTTTTAAT
* *
36519354 ATATTTACAAAAAGAGGCATCTAATTTTTA
1 ATATTTACAAAAAGAGGCACCAAATTTTTA
*
36519384 ATATTTATAAAAAGA-GCAACCAAATTTTTA
1 ATATTTACAAAAAGAGGC-ACCAAATTTTTA
36519414 A
1 A
36519415 AAATAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.34
Consensus pattern (30 bp):
ATATTTACAAAAAGAGGCACCAAATTTTTA
Found at i:36525379 original size:24 final size:24
Alignment explanation
Indices: 36525352--36525400 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
36525342 ACAAAAATCT
*
36525352 ATCCTTAAATTTCCCTAAAATTAG
1 ATCCCTAAATTTCCCTAAAATTAG
*
36525376 ATCCCTAAATTTCTCTAAAATTAG
1 ATCCCTAAATTTCCCTAAAATTAG
36525400 A
1 A
36525401 CTCATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (24 bp):
ATCCCTAAATTTCCCTAAAATTAG
Found at i:36526691 original size:50 final size:50
Alignment explanation
Indices: 36526505--36526751 Score: 208
Period size: 50 Copynumber: 4.8 Consensus size: 50
36526495 GATAATGACA
* ** * * * *
36526505 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGT-AC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * * * ** * *
36526554 TGCCAATGCCATATCCCATATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* ** *
36526604 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTGTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * *
36526654 TGCCAACGCCATGTCCCAGACACGGTCTTACATGGGACCTCTCATAGTCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--A-TCTC---AG
* * *
36526710 TGCCAATGCCATGTCCCAGACAAGGTGTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36526752 TTACCCAAAT
Statistics
Matches: 156, Mismatches: 35, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
49 37 0.24
50 75 0.48
52 1 0.01
53 4 0.03
56 39 0.25
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
Found at i:36534209 original size:50 final size:50
Alignment explanation
Indices: 36534137--36534313 Score: 169
Period size: 50 Copynumber: 3.4 Consensus size: 50
36534127 TATCCCATAT
** * *
36534137 ATGGTCTTACATGGGAATTCTCATATCGGTGCCCATGCCATGT-CTCAGAC
1 ATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCT-AGAC
* *
36534187 ATGGTCTTAC-GGTGGACCTCTCATCTCGGTGCCAACGCCATGTCCTAGAC
1 ATGGTCTTACATG-GGACCTCTCATATCGGTGCCAACGCCATGTCCTAGAC
* * *
36534237 ATGGTCTTACATGGGACCTCTCATAGTCTCAATGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATA---TC---GGTGCCAACGCCATGTCCTAGAC
* *
36534293 AAGGTCTTACATGGGATCTCT
1 ATGGTCTTACATGGGACCTCT
36534314 TTACCCAAAT
Statistics
Matches: 105, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
49 1 0.01
50 60 0.57
51 3 0.03
53 2 0.02
56 39 0.37
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCTAGAC
Found at i:36539177 original size:79 final size:81
Alignment explanation
Indices: 36539041--36539225 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36539031 TTGAATGATG
* *
36539041 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36539105 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36539120 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36539182 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
36539200 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36539226 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36539239 original size:40 final size:40
Alignment explanation
Indices: 36539042--36539225 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
36539032 TGAATGATGT
* * * *
36539042 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36539082 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
36539122 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36539160 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36539201 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36539226 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36539247 original size:79 final size:79
Alignment explanation
Indices: 36539094--36539258 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
36539084 GGACTAAGAT
* * **
36539094 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36539159 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
36539173 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36539236 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36539252 CCGAAGG
1 CCGAAGG
36539259 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36542213 original size:22 final size:21
Alignment explanation
Indices: 36542167--36542214 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
36542157 ATAGACCACT
*
36542167 ACATAATTGCCGATAACGGCC
1 ACATAATTGCAGATAACGGCC
* *
36542188 ACATAATTGCAGTTAAACTGCC
1 ACATAATTGCAGAT-AACGGCC
36542210 ACATA
1 ACATA
36542215 GCTTCCTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.38, C:0.25, G:0.15, T:0.23
Consensus pattern (21 bp):
ACATAATTGCAGATAACGGCC
Found at i:36549425 original size:16 final size:16
Alignment explanation
Indices: 36549397--36549455 Score: 68
Period size: 15 Copynumber: 3.8 Consensus size: 16
36549387 TACAGTTTCT
*
36549397 TATAGTCTCACAA-TC
1 TATAGTTTCACAAGTC
*
36549412 TATAGTTTTCACAATTC
1 TATAG-TTTCACAAGTC
*
36549429 TATAATTTCA-AAGTC
1 TATAGTTTCACAAGTC
36549444 TATAGTTTCACA
1 TATAGTTTCACA
36549456 TCTAAAGAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 18 0.49
16 13 0.35
17 6 0.16
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.41
Consensus pattern (16 bp):
TATAGTTTCACAAGTC
Found at i:36555928 original size:30 final size:30
Alignment explanation
Indices: 36555871--36555932 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
36555861 GCTTTTTAAA
* *
36555871 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
36555901 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
36555931 AA
1 AA
36555933 AAATAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:36563229 original size:22 final size:22
Alignment explanation
Indices: 36563202--36563248 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
36563192 TTATTAAACC
36563202 AAATTAAATTAGA-TATAAATTA
1 AAATT-AATTAGATTATAAATTA
* *
36563224 AAATTAATTATATTATGAATTA
1 AAATTAATTAGATTATAAATTA
36563246 AAA
1 AAA
36563249 CATATAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAATTAATTAGATTATAAATTA
Found at i:36570857 original size:34 final size:34
Alignment explanation
Indices: 36570814--36570886 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
36570804 TCATGTTGTG
*
36570814 TAGGTTGGCCGAATGTGGATGGAAGCATTTAAGC
1 TAGGTTGGCCAAATGTGGATGGAAGCATTTAAGC
36570848 TAGGTTGGCCAAATGTGGATGGAAGCATTTAAGC
1 TAGGTTGGCCAAATGTGGATGGAAGCATTTAAGC
36570882 TAGGT
1 TAGGT
36570887 GCATGCACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.27, C:0.11, G:0.34, T:0.27
Consensus pattern (34 bp):
TAGGTTGGCCAAATGTGGATGGAAGCATTTAAGC
Found at i:36571701 original size:23 final size:24
Alignment explanation
Indices: 36571652--36571707 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
36571642 CCAAATCCCT
* **
36571652 TACCATTTCGTACCAATTTCCAAA
1 TACCAATTCGTACCAATAACCAAA
36571676 TACCAATTCGTACCAA-AACCAAA
1 TACCAATTCGTACCAATAACCAAA
36571699 TACCAATTC
1 TACCAATTC
36571708 TTAATTGACT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 14 0.48
24 15 0.52
ACGTcount: A:0.39, C:0.30, G:0.04, T:0.27
Consensus pattern (24 bp):
TACCAATTCGTACCAATAACCAAA
Found at i:36574136 original size:19 final size:18
Alignment explanation
Indices: 36574108--36574193 Score: 66
Period size: 19 Copynumber: 4.4 Consensus size: 18
36574098 GCGAAAATAC
36574108 AAAAGAAAAGAAAAATGAAA
1 AAAAG-AAAGAAAAA-GAAA
**
36574128 AAAAGAAAGAAAATTCAAA
1 AAAAGAAAGAAAA-AGAAA
36574147 AAAAGAGAATG-AAAAGAAA
1 AAAAGA-AA-GAAAAAGAAA
* *
36574166 GAAAGAAAAGAAAAAGATGA
1 AAAAG-AAAGAAAAAGA-AA
36574186 AAAAGAAA
1 AAAAGAAA
36574194 AATTGAGTGA
Statistics
Matches: 53, Mismatches: 7, Indels: 13
0.73 0.10 0.18
Matches are distributed among these distances:
18 1 0.02
19 35 0.66
20 16 0.30
21 1 0.02
ACGTcount: A:0.76, C:0.01, G:0.17, T:0.06
Consensus pattern (18 bp):
AAAAGAAAGAAAAAGAAA
Found at i:36574166 original size:15 final size:15
Alignment explanation
Indices: 36574128--36574193 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
36574118 AAAAATGAAA
* *
36574128 AAAAGAAAGAAAATTC
1 AAAAGAAAGAGAA-TG
36574144 AAAA-AAAGAGAATG
1 AAAAGAAAGAGAATG
36574158 AAAAGAAAGA-AA-G
1 AAAAGAAAGAGAATG
*
36574171 AAAAGAAAAAG-ATG
1 AAAAGAAAGAGAATG
36574185 AAAAAGAAA
1 -AAAAGAAA
36574194 AATTGAGTGA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
13 11 0.26
14 8 0.19
15 20 0.47
16 4 0.09
ACGTcount: A:0.74, C:0.02, G:0.18, T:0.06
Consensus pattern (15 bp):
AAAAGAAAGAGAATG
Found at i:36578335 original size:24 final size:23
Alignment explanation
Indices: 36578298--36578353 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
36578288 CCAAATCCCT
* **
36578298 TACCATTTCATACCAATTTCCAAA
1 TACCAATTCATACCAA-AACCAAA
*
36578322 TACCAATTCGTACCAAAACCAAA
1 TACCAATTCATACCAAAACCAAA
36578345 TACCAATTC
1 TACCAATTC
36578354 TTAATTGACT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 14 0.50
24 14 0.50
ACGTcount: A:0.41, C:0.30, G:0.02, T:0.27
Consensus pattern (23 bp):
TACCAATTCATACCAAAACCAAA
Found at i:36578873 original size:259 final size:259
Alignment explanation
Indices: 36578414--36579192 Score: 1522
Period size: 259 Copynumber: 3.0 Consensus size: 259
36578404 TTAAACCAAA
*
36578414 TCCACATCCATCTTTGTACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
1 TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
*
36578479 TTCTAATTATACTTCTTCATTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
66 TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
36578544 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
131 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
36578609 CTAGATGCTTACTAATAACTCTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
196 CTAGATGCTTACTAATAACTCTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
36578673 TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
1 TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
36578738 TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
66 TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
*
36578803 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTACATACCATGGTG
131 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
36578868 CTAGATGCTTACTAATAACTCTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
196 CTAGATGCTTACTAATAACTCTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
36578932 TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
1 TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
36578997 TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
66 TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
36579062 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
131 GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
36579127 CTAGATGCTTACTAATAACTCTTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
196 CTAGATGCTTACTAATAACTC-TTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
36579192 T
1 T
36579193 GTACTTAGTA
Statistics
Matches: 515, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
259 471 0.91
260 44 0.09
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (259 bp):
TCCACATCCATCTTTGCACAAACTTACTTTACTTCTTTGAACTCAATTGTATTCTATTTTCTTCT
TTCTAATTATACTTCTTCGTTTACGATCGGGAACTAAACGACTCAGACTCAAATACTAAACCGAG
GTCGTATCATTTATGTTGCGAAGACCCCTTTGTGATTTAATCAACATAATCTGCATACCATGGTG
CTAGATGCTTACTAATAACTCTTAATAGAGTTATATTTCATGGCTTTAGACCTGGCTAATTGAT
Found at i:36611923 original size:27 final size:27
Alignment explanation
Indices: 36611892--36612141 Score: 311
Period size: 27 Copynumber: 9.3 Consensus size: 27
36611882 AGAGGTTGAT
* * **
36611892 AAATGACTGAATTACTCTTACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * *
36611919 AAATGACCGAATTACCCCCATAAGATA
1 AAATGACCGAATTACCCCCACAGGGTA
36611946 AAATGACCGAATTACCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * *
36611973 AAATGATCGAATTATCCCCTCAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
*
36612000 AAATGACCGAATTACCCCCACAGGATA
1 AAATGACCGAATTACCCCCACAGGGTA
36612027 AAATGACCGAATTACCCCCACAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * *
36612054 AAATGATCGAAATACCCCTATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* * * *
36612081 AAATGACCAAAATAACCCCATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
* *
36612108 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACCGAATTACCCCCACAGGGTA
36612135 AAATGAC
1 AAATGAC
36612142 TGTTATACCC
Statistics
Matches: 195, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 195 1.00
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATGACCGAATTACCCCCACAGGGTA
Found at i:36611998 original size:81 final size:81
Alignment explanation
Indices: 36611910--36612140 Score: 356
Period size: 81 Copynumber: 2.9 Consensus size: 81
36611900 GAATTACTCT
*
36611910 TACAGGGTAAAATGACCGAATTACCCCCATAAGATAAAATGACCGAATTACCCCCACAGGGTAAA
1 TACAGGGTAAAATGACCGAATTACCCCCATAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
*
36611975 ATGATCGAATTATCCCC
66 ATGATCGAAATA-CCCC
*
36611992 T-CAGGGTAAAATGACCGAATTACCCCCACAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
1 TACAGGGTAAAATGACCGAATTACCCCCATAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
36612056 ATGATCGAAATACCCC
66 ATGATCGAAATACCCC
* * * * * * *
36612072 TATAGGGTAAAATGACCAAAATAACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAA
1 TACAGGGTAAAATGACCGAATTACCCCCATAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
36612137 ATGA
66 ATGA
36612141 CTGTTATACC
Statistics
Matches: 137, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
80 5 0.04
81 131 0.96
82 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.18
Consensus pattern (81 bp):
TACAGGGTAAAATGACCGAATTACCCCCATAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
ATGATCGAAATACCCC
Found at i:36612150 original size:81 final size:81
Alignment explanation
Indices: 36611910--36612168 Score: 344
Period size: 81 Copynumber: 3.2 Consensus size: 81
36611900 GAATTACTCT
*
36611910 TACAGGGTAAAATGACCGAATTACCCCCATAAGATAAAATGACCGAATTACCCCCACAGGGTAAA
1 TACAGGGTAAAATGACCGAATTACCCCCATAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
36611975 ATGATCGAATTAT-CCCC
66 ATGATCG--TTATACCCC
*
36611992 T-CAGGGTAAAATGACCGAATTACCCCCACAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
1 TACAGGGTAAAATGACCGAATTACCCCCATAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
**
36612056 ATGATCGAAATACCCC
66 ATGATCGTTATACCCC
* * * * * * *
36612072 TATAGGGTAAAATGACCAAAATAACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAA
1 TACAGGGTAAAATGACCGAATTACCCCCATAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
36612137 ATGA-CTGTTATACCCC
66 ATGATC-GTTATACCCC
* * *
36612153 TAGAAGATAAAATGAC
1 TACAGGGTAAAATGAC
36612169 TATTATGGCA
Statistics
Matches: 157, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.01
80 6 0.04
81 148 0.94
82 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.19
Consensus pattern (81 bp):
TACAGGGTAAAATGACCGAATTACCCCCATAGGATAAAATGACCGAATTACCCCCACAGGGTAAA
ATGATCGTTATACCCC
Found at i:36612164 original size:54 final size:52
Alignment explanation
Indices: 36611911--36612168 Score: 243
Period size: 54 Copynumber: 4.8 Consensus size: 52
36611901 AATTACTCTT
* *
36611911 ACAGGGTAAAATGACCGAATTACCCCCATA-AGATAAAATGACCGAATTACCCCC
1 ACAGGGTAAAATGACCGAA-TA-CCCC-TAGAGGTAAAATGACCGAAATACCCCC
* *
36611965 ACAGGGTAAAATGATCGAATTATCCCCTCAG-GGTAAAATGACCGAATTACCCCC
1 ACAGGGTAAAATGACCGAA-TA-CCCCT-AGAGGTAAAATGACCGAAATACCCCC
* * * * *
36612019 ACAGGATAAAATGACCGAATTACCCCCACAGGGTAAAATGATCGAAATACCCCT
1 ACAGGGTAAAATGACCGAA-TACCCCTAGA-GGTAAAATGACCGAAATACCCCC
* *
36612073 ATAGGGTAAAATGACCAAAATAACCCCATAG-GGTAAAATGACCGAAATACCCCC
1 ACAGGGTAAAATGACC-GAAT-ACCCC-TAGAGGTAAAATGACCGAAATACCCCC
* * * *
36612127 ATAGGGTAAAATGACTGTTATACCCCTAGAAGATAAAATGAC
1 ACAGGGTAAAATGACCG-AATACCCCTAG-AGGTAAAATGAC
36612169 TATTATGGCA
Statistics
Matches: 173, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
52 4 0.02
53 10 0.06
54 151 0.87
55 7 0.04
56 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.18
Consensus pattern (52 bp):
ACAGGGTAAAATGACCGAATACCCCTAGAGGTAAAATGACCGAAATACCCCC
Found at i:36614484 original size:5 final size:6
Alignment explanation
Indices: 36614468--36614492 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
36614458 GATTGAACCA
36614468 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
36614493 AATATTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:36629636 original size:40 final size:40
Alignment explanation
Indices: 36629598--36629788 Score: 303
Period size: 40 Copynumber: 4.8 Consensus size: 40
36629588 ATAGCAACTC
* * *
36629598 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACTA
36629638 GCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTA
*
36629678 GCACAAATGCCTTCGAGTCTTAGCCCGGATCAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTA
* *
36629718 GCACAAATGCCTTCGAGACTTAGCCCGGATCAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTA
*
36629758 GCACAAATGCCTTCGGGACTTAGCCCGGATC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATC
36629789 TCATTCAAAT
Statistics
Matches: 144, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 140 0.97
41 4 0.03
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.22
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTA
Found at i:36629642 original size:80 final size:79
Alignment explanation
Indices: 36629557--36629788 Score: 288
Period size: 80 Copynumber: 2.9 Consensus size: 79
36629547 TATTACCACA
* * * * * * *
36629557 AGCACAATTGTCTTCGGGTCTTAACCCGTG-CATAGCAACTCGCACGAATGCCTTCGGGTCTTAG
1 AGCACAAATGCCTTCGGGTCTTAGCCCG-GACAAATC-ACTAGCACAAATGCCTTCGGGTCTTAG
*
36629621 CCCGGAT-ATATCAACT
64 CCCGGATCAAATC-ACT
* *
36629637 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTAGCACAAATGCCTTCGAGTCTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGA-CAAATCACTAGCACAAATGCCTTCGGGTCTTAGC
36629702 CCGGATCAAATCACT
65 CCGGATCAAATCACT
* * *
36629717 AGCACAAATGCCTTCGAGACTTAGCCCGGATCAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGA-CAAATCACTAGCACAAATGCCTTCGGGTCTTAGC
36629782 CCGGATC
65 CCGGATC
36629789 TCATTCAAAT
Statistics
Matches: 134, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.01
80 125 0.93
81 8 0.06
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (79 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGACAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
CGGATCAAATCACT
Found at i:36637326 original size:44 final size:44
Alignment explanation
Indices: 36637278--36637990 Score: 163
Period size: 44 Copynumber: 16.2 Consensus size: 44
36637268 AAAATTGTAG
* *
36637278 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGGCGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAA
* ** * *
36637322 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGACAGCAA
** * * * * * * * ** * *
36637366 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAA-ATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCAAAGACAGCAA
* * *
36637410 ATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAA
* ** * *
36637454 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGTCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGACAGCAA
** * * ** * * ** * *
36637498 GCCTTATCTCCCTGAGCAGTAGTGTAGTGGGTTGAAA-ATGGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAG-CAGATCAAAGACAGCAA
36637542 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAA
* ** *
36637586 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CAACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGAC-AGCAA
** * * * * * * * ** * *
36637630 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAA-ATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCAAAGACAGCAA
** **
36637674 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGGAGATGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAA
* * ** * *
36637718 CTCTTATCTTTCC-AAG--GTAGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGACAGCAA
** * * * * * * * ** *
36637762 GCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAA-ATTGTAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCAAAGACAGCAA
* *
36637806 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAA
* * * ** * *
36637850 GTCTTATCTTTCC-AAG-A-TAGTGGGAAACAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCAAAGACAGCAA
** * * * * * * ** * *
36637894 GCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAA-ATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCAAAGACAGCAA
* * *
36637938 ATCTTATTTCCCTAAGCAGTAATGGAGCAGATCAAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAA
36637982 ATCTTATCT
1 ATCTTATCT
36637991 TTCCAAGATA
Statistics
Matches: 443, Mismatches: 184, Indels: 84
0.62 0.26 0.12
Matches are distributed among these distances:
42 21 0.05
43 51 0.12
44 309 0.70
45 48 0.11
46 14 0.03
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGCAA
Found at i:36638082 original size:132 final size:132
Alignment explanation
Indices: 36637096--36638040 Score: 1593
Period size: 132 Copynumber: 7.2 Consensus size: 132
36637086 AGGTCGAAGA
* * * *
36637096 CACCAAGCCTTGTCTCCTTGAGCAGCAGCAGAGTAGGTTGAAAATTGTAGACCTTATCTCCTTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* * *
36637161 GCAGTAGTGGAGCAGATCGAAGACGGAAAATCTTATCTTTCCTATATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36637226 GC
131 GC
*
36637228 CACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* *
36637293 GCAGTAGTGGAGCAGATCAAAGGCGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36637358 GC
131 GC
*
36637360 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAG
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
36637425 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
*
36637490 GT
131 GC
* * * * * *
36637492 CACCAAGCCTTATCTCCCTGAGCAGTAGTGTAGTGGGTTGAAAATGGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* *
36637557 GCAGTAGTGGAGCAGATCAAAGACAGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36637622 GC
131 GC
*
36637624 AACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* * * *
36637689 GCAGTAGTGGAGCAGATCGGAGATGGCAACTCTTATCTTTCCAAGGTAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36637754 GC
131 GC
*
36637756 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* *
36637821 GCAGTAGTGGAGCAGATCGAAGACGGCAAGTCTTATCTTTCCAAGATAGTGGGAAACAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36637886 GC
131 GC
* *
36637888 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTGTAGATCTTATTTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
* *
36637953 GCAGTAATGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36638018 GC
131 GC
*
36638020 CACCAAGCCTTATCTCCCTGA
1 CACCAAGCCTTGTCTCCCTGA
36638041 AGTTGCAGTG
Statistics
Matches: 760, Mismatches: 53, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 760 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:36638122 original size:44 final size:44
Alignment explanation
Indices: 36638028--36638136 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 44
36638018 GCCACCAAGC
* *
36638028 CTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGTCGATAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGACCATAAT
* * *
36638072 CCTATCTCCCTGAAGTTGCAGTGGAGC-GGATTAAA-ACCTTAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTAAAGACCATA-AT
*
36638116 CTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAG
36638137 AGAATAGATC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
43 4 0.07
44 52 0.93
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTAAAGACCATAAT
Found at i:36643138 original size:42 final size:42
Alignment explanation
Indices: 36643033--36643242 Score: 284
Period size: 42 Copynumber: 5.0 Consensus size: 42
36643023 GCTTACAGAA
*
36643033 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTAAGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
*
36643075 AAATAAACGCCGCTAAAGATCATGTTCTTTAGCGGCACTTAGG
1 AAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
*
36643118 AAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGCTTAGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
* *
36643160 AAGAAAACGCCGCTAAA-AGTAATGTTCTATAGCGGCGCTT-GG
1 AA-AAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTAGG
*
36643202 TCAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTTA
1 -AAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
36643243 TTTCACAAAC
Statistics
Matches: 153, Mismatches: 9, Indels: 11
0.88 0.05 0.06
Matches are distributed among these distances:
41 1 0.01
42 79 0.52
43 73 0.48
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
Found at i:36643168 original size:85 final size:85
Alignment explanation
Indices: 36643033--36643242 Score: 286
Period size: 85 Copynumber: 2.5 Consensus size: 85
36643023 GCTTACAGAA
* *
36643033 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTAAGGAAATAAACGCCGCT-AAAGATCA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAATAAACGCCGCTAAAAG-TAA
*
36643097 TGTTCTTTAGCGGCACTTAGG-
65 TGTTCTATAGCGGCACTT-GGT
*
36643118 AAAAAACGCCGCTAAAGATCATGTTCTTTAGTGGCGCTTAGGAAGA-AAACGCCGCTAAAAGTAA
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAA-ATAAACGCCGCTAAAAGTAA
*
36643182 TGTTCTATAGCGGCGCTTGGT
65 TGTTCTATAGCGGCACTTGGT
*
36643203 CAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGCTTA
1 AAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
36643243 TTTCACAAAC
Statistics
Matches: 113, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
84 4 0.04
85 104 0.92
86 5 0.04
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (85 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAAATAAACGCCGCTAAAAGTAAT
GTTCTATAGCGGCACTTGGT
Found at i:36643703 original size:21 final size:21
Alignment explanation
Indices: 36643679--36643727 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
36643669 GCTTCTATCG
* *
36643679 CTGCTTCTCTTGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
36643700 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
36643721 CTGCTTC
1 CTGCTTC
36643728 CCTCATTGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.39, G:0.20, T:0.39
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:36649261 original size:25 final size:25
Alignment explanation
Indices: 36649230--36649513 Score: 128
Period size: 25 Copynumber: 10.6 Consensus size: 25
36649220 ATTTTTCTCA
36649230 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
*
36649255 ATGTAAGTTATGTA-TATAGTATAAAAGAT
1 ATGTAAGTTATGTATTA-AG--T-AAA-TT
* *
36649284 ATGTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
**
36649309 ATGTAAGTTATGTAGGTTATTA-TAAGCT
1 ATGTAAGTTATGTA--TTA--AGTAAATT
36649337 ATGTAAGTTATTATGTAAGTTAAGATATAATAT
1 ATGTAAG---TTATGT-A-TTAAG-TA-AAT-T
* *
36649370 ATGT-TGATTATATATTAAGTAAATT
1 ATGTAAG-TTATGTATTAAGTAAATT
* * * *
36649395 ATGTAAGTTATGGAGTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* **
36649420 ATATAAGTTATGTAAGTTATA-TAAGCT
1 ATGTAAGTTATGT-A-TTA-AGTAAATT
36649447 ATGTAAGTTAT-TATGTAAGTAATGTATT
1 ATGTAAGTTATGTAT-TAAGTAA---ATT
** * *
36649475 AAATAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* *
36649500 ATATAAGCTATGTA
1 ATGTAAGTTATGTA
36649514 CCATTTATTA
Statistics
Matches: 201, Mismatches: 30, Indels: 56
0.70 0.10 0.20
Matches are distributed among these distances:
24 4 0.02
25 80 0.40
26 8 0.04
27 24 0.12
28 36 0.18
29 21 0.10
30 8 0.04
31 12 0.06
32 3 0.01
33 5 0.02
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.43
Consensus pattern (25 bp):
ATGTAAGTTATGTATTAAGTAAATT
Found at i:36649265 original size:9 final size:9
Alignment explanation
Indices: 36649230--36649567 Score: 159
Period size: 9 Copynumber: 37.6 Consensus size: 9
36649220 ATTTTTCTCA
36649230 ATGTAAGTT
1 ATGTAAGTT
36649239 ATGT-A-TT
1 ATGTAAGTT
* *
36649246 AAGTAAATT
1 ATGTAAGTT
36649255 ATGTAAGTT
1 ATGTAAGTT
36649264 ATGTATA-TAGT
1 ATGTA-AGT--T
** *
36649275 ATAAAAGAT
1 ATGTAAGTT
36649284 ATGTAAGTT
1 ATGTAAGTT
36649293 ATGT-A-TT
1 ATGTAAGTT
36649300 ATGTAAGTT
1 ATGTAAGTT
36649309 ATGTAAGTT
1 ATGTAAGTT
*
36649318 ATGTAGGTT
1 ATGTAAGTT
* *
36649327 ATTATAAGCT
1 A-TGTAAGTT
36649337 ATGTAAGTTATT
1 ATGTAAG---TT
36649349 ATGTAAGTT
1 ATGTAAGTT
* *
36649358 AAGATATAATAT
1 ATG-TA-AGT-T
*
36649370 ATGT-TGATT
1 ATGTAAG-TT
*
36649379 ATAT-A-TT
1 ATGTAAGTT
* *
36649386 AAGTAAATT
1 ATGTAAGTT
36649395 ATGTAAGTT
1 ATGTAAGTT
*
36649404 ATG-GAG-T
1 ATGTAAGTT
36649411 ATGTAAGTT
1 ATGTAAGTT
*
36649420 ATATAAGTT
1 ATGTAAGTT
36649429 ATGTAAGTT
1 ATGTAAGTT
* *
36649438 ATATAAGCT
1 ATGTAAGTT
36649447 ATGTAAGTTATT
1 ATGTAAG---TT
*
36649459 ATGTAAGTA
1 ATGTAAGTT
36649468 ATGT-A-TT
1 ATGTAAGTT
**
36649475 AAATAAGTT
1 ATGTAAGTT
36649484 ATGT-A-TT
1 ATGTAAGTT
36649491 ATGTAAGTT
1 ATGTAAGTT
* *
36649500 ATATAAGCT
1 ATGTAAGTT
*
36649509 ATGTACCATTT
1 ATGTA--AGTT
36649520 AT-TAAGTT
1 ATGTAAGTT
*
36649528 ATGTATG-T
1 ATGTAAGTT
* *
36649536 ATGTGACTT
1 ATGTAAGTT
*
36649545 TTGTAAGTT
1 ATGTAAGTT
*
36649554 ATGTAAATT
1 ATGTAAGTT
36649563 ATGTA
1 ATGTA
36649568 TTAAATTAAA
Statistics
Matches: 243, Mismatches: 55, Indels: 62
0.68 0.15 0.17
Matches are distributed among these distances:
7 28 0.12
8 23 0.09
9 149 0.61
10 13 0.05
11 11 0.05
12 19 0.08
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:36649304 original size:16 final size:16
Alignment explanation
Indices: 36649283--36649501 Score: 102
Period size: 16 Copynumber: 13.8 Consensus size: 16
36649273 GTATAAAAGA
36649283 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
36649299 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
*
36649317 TATGTAGGTTAT-TA-
1 TATGTAAGTTATGTAT
* * *
36649331 TAAGCTATG-TAAGTTAT
1 TATG-TAAGTTATG-TAT
*
36649348 TATGTAAGTTAAGATAT
1 TATGTAAGTTATG-TAT
* * *
36649365 AATATATGTTGAT-TAT
1 TATGTAAGTT-ATGTAT
*
36649381 ATAT-TAAG-TA--AAT
1 -TATGTAAGTTATGTAT
* *
36649394 TATGTAAGTTATGGAG
1 TATGTAAGTTATGTAT
*
36649410 TATGTAAGTTATATAAGT
1 TATGTAAGTTATGT-A-T
* *
36649428 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
36649446 TATGTAAG---T-TAT
1 TATGTAAGTTATGTAT
*
36649458 TATGTAAGTAATGTAT
1 TATGTAAGTTATGTAT
**
36649474 TAAATAAGTTATGTAT
1 TATGTAAGTTATGTAT
36649490 TATGTAAGTTAT
1 TATGTAAGTTAT
36649502 ATAAGCTATG
Statistics
Matches: 158, Mismatches: 26, Indels: 38
0.71 0.12 0.17
Matches are distributed among these distances:
12 11 0.07
13 7 0.04
14 9 0.06
15 6 0.04
16 65 0.41
17 22 0.14
18 38 0.24
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.44
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:36649339 original size:19 final size:19
Alignment explanation
Indices: 36649299--36649350 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
36649289 AGTTATGTAT
* *
36649299 TATGTAAGTTA-TGTAAGT
1 TATGTAAGTTATTATAAGC
*
36649317 TATGTAGGTTATTATAAGC
1 TATGTAAGTTATTATAAGC
36649336 TATGTAAGTTATTAT
1 TATGTAAGTTATTAT
36649351 GTAAGTTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 10 0.34
19 19 0.66
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (19 bp):
TATGTAAGTTATTATAAGC
Found at i:36652107 original size:245 final size:245
Alignment explanation
Indices: 36651677--36652175 Score: 831
Period size: 245 Copynumber: 2.0 Consensus size: 245
36651667 AGAGTAAAAA
*
36651677 CGCCACTAATAACACGGACAAAACGGCATCGTTATAAGATAACATTAAACATTTTTGCGGCCACT
1 CGCCACTAATAACACGGACAAAACGGCACCGTTATAAGATAACATTAAACATTTTTGCGGCCACT
* *
36651742 AATAAAAATAGGAAACGGCACCGTTTCCTCAGCTCATAATAAATATTTGTGGCGTTTTTAAAATG
66 AATAAAAATAGGAAACGACACCGTTTCCTCAGCTCATAATAAATATTTCTGGCGTTTTTAAAATG
*
36651807 CGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTCGTTACAGTTAAAGGAAATTTGTGGCGTT
131 CGCCACTAAAAGAAAACAACAAAACGGCACCGTATTCGTTACAGTTAAAGGAAATTTGTGGCGTT
* *
36651872 TCTTCGTAAAACGCCGGTAATATATCACCTTTAGCGGCGTTTTTCAAATG
196 TCTTCATAAAACGCCGGTAATATATCACCTTTAGCGGCGTATTTCAAATG
* * *
36651922 CGCCACTAATAACATGGACAAAACGGCACCGTTATAAGATAACATTAAAGATTTTTGCGG-CGCT
1 CGCCACTAATAACACGGACAAAACGGCACCGTTATAAGATAACATTAAACATTTTTGCGGCCACT
* * *
36651986 -TTAGCAAAATAGGAAACGACGCCGTTTCCTCAGCTCGTAATAAATATTTCTGGCGTTTTTAAAA
66 AATA--AAAATAGGAAACGACACCGTTTCCTCAGCTCATAATAAATATTTCTGGCGTTTTTAAAA
*
36652050 TGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTTGTTACAGTTAAAGGAAATTTGTGGCG
129 TGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTCGTTACAGTTAAAGGAAATTTGTGGCG
*
36652115 TTTCTTCATAAAACGCCGGTAATATATCACTTTTAGCGGCGTATTTCAAATG
194 TTTCTTCATAAAACGCCGGTAATATATCACCTTTAGCGGCGTATTTCAAATG
*
36652167 TGCCACTAA
1 CGCCACTAA
36652176 AAGAAAATAA
Statistics
Matches: 237, Mismatches: 15, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
243 2 0.01
244 3 0.01
245 232 0.98
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (245 bp):
CGCCACTAATAACACGGACAAAACGGCACCGTTATAAGATAACATTAAACATTTTTGCGGCCACT
AATAAAAATAGGAAACGACACCGTTTCCTCAGCTCATAATAAATATTTCTGGCGTTTTTAAAATG
CGCCACTAAAAGAAAACAACAAAACGGCACCGTATTCGTTACAGTTAAAGGAAATTTGTGGCGTT
TCTTCATAAAACGCCGGTAATATATCACCTTTAGCGGCGTATTTCAAATG
Found at i:36652243 original size:115 final size:115
Alignment explanation
Indices: 36652037--36652271 Score: 389
Period size: 115 Copynumber: 2.0 Consensus size: 115
36652027 AAATATTTCT
*
36652037 GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTTGTTACAGTTAAAG
1 GGCGTATTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTTGTTACAGTTAAAG
* * * *
36652102 GAAATTTGTGGCGTTTCTTCATAAAACGCCGGTAATATATCACTTTTAGC
66 GAAATTTGCGGCGTTTCTTCACAAAACGCCGGTAATATATAACCTTTAGC
* * * *
36652152 GGCGTATTTCAAATGTGCCACTAAAAGAAAATAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
1 GGCGTATTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTTGTTACAGTTAAAG
36652217 GAAATTTGCGGCGTTTCTTCACAAAACGCCGGTAATATATAACCTTTAGC
66 GAAATTTGCGGCGTTTCTTCACAAAACGCCGGTAATATATAACCTTTAGC
36652267 GGCGT
1 GGCGT
36652272 TTTTTCTGAA
Statistics
Matches: 111, Mismatches: 9, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
115 111 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (115 bp):
GGCGTATTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTATTTGTTACAGTTAAAG
GAAATTTGCGGCGTTTCTTCACAAAACGCCGGTAATATATAACCTTTAGC
Found at i:36652783 original size:14 final size:13
Alignment explanation
Indices: 36652724--36652805 Score: 58
Period size: 14 Copynumber: 5.9 Consensus size: 13
36652714 CAATATATCA
* *
36652724 TAAACCTTAAATCA
1 TAAACC-TAAACCG
*
36652738 TAAATCCTAAACCC
1 TAAA-CCTAAACCG
*
36652752 CAAACCTAAAACTC-
1 TAAACCT-AAAC-CG
*
36652766 TAAACTCTAAATCG
1 TAAAC-CTAAACCG
36652780 TAAACCCTAAACCG
1 TAAA-CCTAAACCG
36652794 TAAACCTAAACC
1 TAAACCTAAACC
36652806 ATATTTTTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
13 12 0.21
14 38 0.68
15 6 0.11
ACGTcount: A:0.46, C:0.30, G:0.02, T:0.21
Consensus pattern (13 bp):
TAAACCTAAACCG
Found at i:36653167 original size:7 final size:7
Alignment explanation
Indices: 36653134--36653196 Score: 56
Period size: 7 Copynumber: 8.9 Consensus size: 7
36653124 TGCATTGAAA
36653134 CCCTAA-
1 CCCTAAC
*
36653140 CCGTAAC
1 CCCTAAC
36653147 CCCTAAATC
1 CCCT-AA-C
36653156 CCCTAAC
1 CCCTAAC
36653163 CCCTAAC
1 CCCTAAC
*
36653170 CCCTAAA
1 CCCTAAC
* *
36653177 GCATAAC
1 CCCTAAC
*
36653184 ACCTAAC
1 CCCTAAC
36653191 CCCTAA
1 CCCTAA
36653197 ACTTTAAATC
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
6 5 0.11
7 31 0.69
8 4 0.09
9 5 0.11
ACGTcount: A:0.35, C:0.46, G:0.03, T:0.16
Consensus pattern (7 bp):
CCCTAAC
Found at i:36653914 original size:72 final size:72
Alignment explanation
Indices: 36653796--36653946 Score: 178
Period size: 72 Copynumber: 2.1 Consensus size: 72
36653786 ATAGCTGAGA
* * * *
36653796 AAACGACACCGTTTGGCTTAGGTTTTTTAGCGGCGCTTCCCCAAAAACGCCGCAAAATCCCAAAA
1 AAACGACACCGTTTGGCTTAGGATTATTAGCGGCACTTCACCAAAAACGCCGCAAAATCCCAAAA
36653861 ACTACGG
66 ACTACGG
* * * ** *
36653868 AAACGGCACCGTTTGGCTTAGGATTATTAGTGGCACTTGATTAAAAACGTCGCAAAATCCCCAAA
1 AAACGACACCGTTTGGCTTAGGATTATTAGCGGCACTTCACCAAAAACGCCGCAAAAT-CCCAAA
* *
36653933 AGCT-CGA
65 AACTACGG
36653940 AAACGAC
1 AAACGAC
36653947 GTCGTTGGGC
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
72 56 0.86
73 9 0.14
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (72 bp):
AAACGACACCGTTTGGCTTAGGATTATTAGCGGCACTTCACCAAAAACGCCGCAAAATCCCAAAA
ACTACGG
Found at i:36656038 original size:18 final size:19
Alignment explanation
Indices: 36656015--36656065 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
36656005 TTGTTATTAC
36656015 ATACATATTTTA-AAACAT
1 ATACATATTTTATAAACAT
* *
36656033 ATACATA-TATATATACAT
1 ATACATATTTTATAAACAT
*
36656051 ATATATATTTTATAA
1 ATACATATTTTATAA
36656066 TCTATGTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 3 0.12
18 18 0.69
19 5 0.19
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (19 bp):
ATACATATTTTATAAACAT
Found at i:36656046 original size:12 final size:12
Alignment explanation
Indices: 36656031--36656058 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
36656021 ATTTTAAAAC
36656031 ATATACATATAT
1 ATATACATATAT
36656043 ATATACATATAT
1 ATATACATATAT
36656055 ATAT
1 ATAT
36656059 TTTATAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
ATATACATATAT
Found at i:36659670 original size:9 final size:9
Alignment explanation
Indices: 36659656--36659693 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
36659646 GTTCAGACTA
36659656 AAAAAAATC
1 AAAAAAATC
36659665 AAAAAAATC
1 AAAAAAATC
*
36659674 -AAAAAATT
1 AAAAAAATC
36659682 AAAAAAATC
1 AAAAAAATC
36659691 AAA
1 AAA
36659694 GTAAAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
8 7 0.27
9 19 0.73
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAAAAATC
Found at i:36659679 original size:17 final size:17
Alignment explanation
Indices: 36659657--36659693 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
36659647 TTCAGACTAA
36659657 AAAAAATCAAAAAAATC
1 AAAAAATCAAAAAAATC
*
36659674 AAAAAATTAAAAAAATC
1 AAAAAATCAAAAAAATC
36659691 AAA
1 AAA
36659694 GTAAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAAATCAAAAAAATC
Found at i:36659718 original size:19 final size:20
Alignment explanation
Indices: 36659691--36659739 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
36659681 TAAAAAAATC
* *
36659691 AAAGTAAAAAATAG-GAGAA
1 AAAGAAAAAAAAAGAGAGAA
*
36659710 AAAGAAAAAAAAAGAAGAGGA
1 AAAGAAAAAAAAAG-AGAGAA
36659731 AAAGAAAAA
1 AAAGAAAAA
36659740 TGAGAGGTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 12 0.48
21 13 0.52
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (20 bp):
AAAGAAAAAAAAAGAGAGAA
Found at i:36659721 original size:22 final size:21
Alignment explanation
Indices: 36659696--36659739 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
36659686 AAATCAAAGT
* *
36659696 AAAAAATAGGAGAAAAAGAAA
1 AAAAAAGAAGAGAAAAAGAAA
*
36659717 AAAAAAGAAGAGGAAAAGAAA
1 AAAAAAGAAGAGAAAAAGAAA
36659738 AA
1 AA
36659740 TGAGAGGTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAAAAGAAGAGAAAAAGAAA
Found at i:36661907 original size:44 final size:44
Alignment explanation
Indices: 36661859--36663669 Score: 763
Period size: 44 Copynumber: 41.2 Consensus size: 44
36661849 AGAAACAAAC
* *
36661859 CTTGCCTCTCTCGGTTGTGATGGAGTTGGTTGAAGATAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
** * * * * *
36661903 CTTGCCT-TC-CTGCAT-TGACAGCGAAGCAGGTCGAAGAC-ATAGAC
1 CTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
* *
36661947 CTTGTCTCTCTCGGTTGTTATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * *
36661991 CTTGCCT-TC-CGGTAT-TGATAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCCTCTCTCGGT-TGTGAT-G-G-AGCTGGTTGAAGACAAAAGAT
36662035 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * * ** *
36662079 CTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGATCGAAGACCCAA-AC
1 CTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
* *
36662123 CTTACCTCTCTCGGTTGTGATGGAGCTAGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* ** * * * * * ** *
36662167 CTTGCCT-TC-CTGTAATGACAGCGAAGCAGATCGAATACACTA-AC
1 CTTGCCTCTCTCGGTTGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
36662211 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * * *
36662255 CTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGGTCGAAGACACAA-AC
1 CTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
* * *
36662299 CTTGCCTCTCTCGATTGTGATGGAGCTAGTTGAAAACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * * * *
36662343 CTTGTCT-TC-CTGTAT-TGACAGCGATGCAGGTCGAAGACACAA-AC
1 CTTGCCTCTCTCGGT-TGTGA-TG-GA-GCTGGTTGAAGACAAAAGAT
36662387 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
** * * * * * *
36662431 CTTGCCT-TC-CTGCAT-TGACAGCGAAGC-AGATCATAGACACAA-AC
1 CTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGA-AGACAAAAGAT
*
36662475 CTTGCCTCTCTCGGTCGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* ** * * * * *
36662519 CTTACCT-TC-CTGCAT-TGACAGCGAAGCAGGTCGAAGACACAA-AC
1 CTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
**
36662563 CTTGCCTCTCTCGGTTGTGATGTTGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * * * * *
36662607 CTTGGCT-TC-C-TTTATTGATAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCCTCTCTCGGTT-GTGAT-G-G-AGCTGGTTGAAGACAAAAGAT
* *
36662651 CTTGCCTCTCTCAGTTGTGATGGAGCTGGTTGAAGATAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * * * * * *
36662695 CTTGCCT-TC-CTGTAT-TAACAGCAAAGCAGATCGAAGACACAA-AC
1 CTTGCCTCTCTCGGT-TGTGA-TG--GAGCTGGTTGAAGACAAAAGAT
* * *
36662739 CTTACCTCTCTCGGTTGTGATAGAGCTGGTTGAAGATAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * * * *
36662783 CTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
36662827 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * * * *
36662871 CTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
*
36662915 CTTACCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
** * * * * *
36662959 CTTGCCT-TC-CTGCAT-TGACAGCGAAGCAGGTCGAAGACACAA-AC
1 CTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
36663003 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * * *
36663047 CTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGGTCGAAGACACAA-AC
1 CTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
* *
36663091 CTTGCCTCTCTCGGTTGTGATGGAGCTAGTTGAAAACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * ** * *
36663135 CTTGCCT-TC-CTGTAT-TGACAGCGATGCAGGTCAAAGACACAA-AC
1 CTTGCCTCTCTCGGT-TGTGA-TG-GA-GCTGGTTGAAGACAAAAGAT
* *
36663179 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTCAAAACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
* * * * * *
36663223 CTTGCCT-TC-CTGTAT-TGACAGCGAAGCAGGTCGAAGACACAA-AC
1 CTTGCCTCTCTCGGT-TGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
36663267 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
*** ** * * * *
36663311 CTTGCCT-TCCTATATTGACAGCGGAGCAGGTTGAAGACACAA-AC
1 CTTGCCTCT-CTCGGTTGTGA-TGGAGCTGGTTGAAGACAAAAGAT
* *
36663355 CTTGCCTTTCTCGGTTGTGATGGAGCTGGTTGAAGATAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
** * * * * *
36663399 CTTGCCT-TC-CTGCAT-TGACAGCGAAGCAGGTCGAAGACACAA-AC
1 CTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
* * *
36663443 CTTGCCTCTCTCGGTTGTGATGGAGTTGGTTGAAGATAAATGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
** * * ** * *
36663487 CTTGCCT-TC-CTGCAT-TGACAGCGAAGCAGGTCAAAGACACAA-AC
1 CTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
* *
36663531 CTTGCCTCTCTCGGTTGTGATAGAGCTGGTTGAAGATAAAAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
** * * * * *
36663575 CTTGCCT-TC-CTGCAT-TGACAGCGAAGCAGGTCGAAGACACAA-AC
1 CTTGCCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACAAAAGAT
* *
36663619 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAGGACAATAGAT
1 CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
36663663 CTTGCCT
1 CTTGCCT
36663670 TCCTGCATTG
Statistics
Matches: 1262, Mismatches: 349, Indels: 312
0.66 0.18 0.16
Matches are distributed among these distances:
41 2 0.00
42 98 0.08
43 344 0.27
44 375 0.30
45 343 0.27
46 98 0.08
47 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (44 bp):
CTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
Found at i:36661950 original size:88 final size:88
Alignment explanation
Indices: 36661801--36663713 Score: 3135
Period size: 88 Copynumber: 21.7 Consensus size: 88
36661791 AACAGATCAG
* * * *
36661801 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGAAACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36661866 CTCTCGGTTGTGATGGAGTTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
36661889 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACATAGACCTTGTCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36661954 CTCTCGGTTGTTATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
36661977 TGAAGACAAAAGATCTTGCCTTCCGGTATTGATAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36662042 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
36662065 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACCCAAACCTTACCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36662130 CTCTCGGTTGTGATGGAGCTAGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
36662153 TGAAGACAAAAGATCTTGCCTTCCTGTAATGACAGCGAAGCAGATCGAATACACTAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36662218 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
36662241 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* *
36662306 CTCTCGATTGTGATGGAGCTAGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
36662329 TGAAAACAAAAGATCTTGTCTTCCTGTATTGACAGCGATGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36662394 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
36662417 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC-ATAGACACAAACCTTGCC
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGA-AGACACAAACCTTGCC
*
36662481 TCTCTCGGTCGTGATGGAGCTGGT
65 TCTCTCGGTTGTGATGGAGCTGGT
* *
36662505 TGAAGACAAAAGATCTTACCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
**
36662570 CTCTCGGTTGTGATGTTGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
36662593 TGAAGACAAAAGATCTTGGCTTCCTTTATTGATAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36662658 CTCTCAGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
36662681 TGAAGATAAAAGATCTTGCCTTCCTGTATTAACAGCAAAGCAGATCGAAGACACAAACCTTACCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36662746 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
36662769 TGAAGATAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36662834 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
36662857 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACAAACCTTACCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36662922 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
*
36662945 TGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36663010 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
36663033 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36663098 CTCTCGGTTGTGATGGAGCTAGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
36663121 TGAAAACAAAAGATCTTGCCTTCCTGTATTGACAGCGATGCAGGTCAAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36663186 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
36663209 TCAAAACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36663274 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * *
36663297 TGAAGACAAAAGATCTTGCCTTCCTATATTGACAGCGGAGCAGGTTGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36663362 TTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
36663385 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36663450 CTCTCGGTTGTGATGGAGTTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * *
36663473 TGAAGATAAATGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36663538 CTCTCGGTTGTGATAGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* *
36663561 TGAAGATAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36663626 CTCTCGGTTGTGATGGAGCTGGT
66 CTCTCGGTTGTGATGGAGCTGGT
* * * * *
36663649 TGAGGACAATAGATCTTGCCTTCCTGCATTGACAGCGAAGCATGTCGAAAACACAAACCTTGCCT
1 TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36663714 TCTTGTACTA
Statistics
Matches: 1711, Mismatches: 112, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
87 1 0.00
88 1709 1.00
89 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (88 bp):
TGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
CTCTCGGTTGTGATGGAGCTGGT
Found at i:36663808 original size:46 final size:46
Alignment explanation
Indices: 36663740--36663945 Score: 297
Period size: 46 Copynumber: 4.5 Consensus size: 46
36663730 GAGTAGACTA
* *
36663740 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCG
1 AAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGAGATCG
* * * *
36663786 AAGATAGTAAATCTTGTTTTCCTGTATTTGGCAGCGGAGGAGATTG
1 AAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGAGATCG
*
36663832 AAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCG
1 AAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGAGATCG
* *
36663878 AAGATGGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCG
1 AAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGAGATCG
* *
36663924 AAGATGGT-GAATCTTATCTTCC
1 AAGATAGTAG-ATCTTGTCTTCC
36663946 CATTACAGTG
Statistics
Matches: 148, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 147 0.99
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (46 bp):
AAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGAGATCG
Found at i:36664068 original size:132 final size:132
Alignment explanation
Indices: 36663918--36664320 Score: 637
Period size: 132 Copynumber: 3.1 Consensus size: 132
36663908 GCAGCAGAGT
* * *
36663918 AGATCGAAGATGGTGAATCTTATCTTCCCATTACAGTGGAGAAGCGGATTTAAGCCATTAGTCTT
1 AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGCCATTAGTCCT
* ** *
36663983 ATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAAACTAAGCAGTAGTGTA
66 ATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA
36664048 GC
131 GC
*
36664050 AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCT
1 AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGCCATTAGTCCT
*
36664115 ATCACCCTAAACAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA
66 ATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA
36664180 GC
131 GC
*
36664182 AGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGG-TTTAAGCCATTAGTCC
1 AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGC-GGATTTAAGCCATTAGTCC
* ** * ** *
36664246 TATCACCCTAAGCAGTAGTGGGGTAGGTCAAAGACTATAGATTCTGTCCCCCTAAGCAGTAGTGG
65 TATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGG
36664311 AGC
130 AGC
36664314 AGATCAA
1 AGATCAA
36664321 CAATAACGAA
Statistics
Matches: 250, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
132 249 1.00
133 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (132 bp):
AGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGCCATTAGTCCT
ATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGA
GC
Found at i:36665270 original size:21 final size:21
Alignment explanation
Indices: 36665244--36665286 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
36665234 TTTCTGCCGG
*
36665244 ATTTTTTCATGTACAAGCCCA
1 ATTTTTTCATGCACAAGCCCA
*
36665265 ATTTTTTCATGCCCAAGCCCA
1 ATTTTTTCATGCACAAGCCCA
36665286 A
1 A
36665287 CAAATCCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (21 bp):
ATTTTTTCATGCACAAGCCCA
Found at i:36666931 original size:22 final size:22
Alignment explanation
Indices: 36666891--36666932 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
36666881 TTTATTGATT
36666891 TCTTTTTATTATATATTTTCCA
1 TCTTTTTATTATATATTTTCCA
*
36666913 TCTTATTTATT-TATCTTTTC
1 TCTT-TTTATTATATATTTTC
36666933 TTATTTTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (22 bp):
TCTTTTTATTATATATTTTCCA
Found at i:36668753 original size:20 final size:20
Alignment explanation
Indices: 36668729--36668779 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
36668719 CAAAAATTAA
36668729 AAAATATTTT-ATATAATTTT
1 AAAATATTTTAATAT-ATTTT
* *
36668749 CAAATAATTTTAATATTTTTT
1 AAAAT-ATTTTAATATATTTT
36668770 AAAATATTTT
1 AAAATATTTT
36668780 TTTGAATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 9 0.35
21 13 0.50
22 4 0.15
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
AAAATATTTTAATATATTTT
Found at i:36673162 original size:6 final size:6
Alignment explanation
Indices: 36673147--36673180 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
36673137 CTTTTAGTGA
*
36673147 GAATGT GAATGC GAATGT GAATGT GAATGT GAAT
1 GAATGT GAATGT GAATGT GAATGT GAATGT GAAT
36673181 ATGATAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.35, C:0.03, G:0.32, T:0.29
Consensus pattern (6 bp):
GAATGT
Found at i:36676951 original size:21 final size:20
Alignment explanation
Indices: 36676927--36676977 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
36676917 TATTTGGAGA
36676927 GATTTAAGGGGAGAATATTGG
1 GATTTAA-GGGAGAATATTGG
36676948 GATTT-AGGGAGAATATTGG
1 GATTTAAGGGAGAATATTGG
36676967 GATTT-AGGGAG
1 GATTTAAGGGAG
36676978 CTATATATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 24 0.80
20 1 0.03
21 5 0.17
ACGTcount: A:0.31, C:0.00, G:0.39, T:0.29
Consensus pattern (20 bp):
GATTTAAGGGAGAATATTGG
Found at i:36676959 original size:19 final size:19
Alignment explanation
Indices: 36676935--36676977 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
36676925 GAGATTTAAG
36676935 GGGAGAATATTGGGATTTA
1 GGGAGAATATTGGGATTTA
36676954 GGGAGAATATTGGGATTTA
1 GGGAGAATATTGGGATTTA
36676973 GGGAG
1 GGGAG
36676978 CTATATATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.42, T:0.28
Consensus pattern (19 bp):
GGGAGAATATTGGGATTTA
Found at i:36678107 original size:52 final size:52
Alignment explanation
Indices: 36678029--36678196 Score: 237
Period size: 52 Copynumber: 3.2 Consensus size: 52
36678019 AACACGTCAA
* *
36678029 GAAAGAAAGCCTGTGTAGTGTAATATGAAAGAAAGCCTGTGTGGCGTAATAT
1 GAAAGAAAGCCTGTGTGGTGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
* *
36678081 GAAAGAAAGCTTGTGTGGTGTAATATGAAAGAAAGCCTGTGAGGCATAATAT
1 GAAAGAAAGCCTGTGTGGTGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
* * * * * *
36678133 GAAAGAAAGCCTATGTGGCGTAATATGGAAGAAAGCCTATGTGGCTTAACAT
1 GAAAGAAAGCCTGTGTGGTGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
*
36678185 GAAAGAGAGCCT
1 GAAAGAAAGCCT
36678197 ATATGGCAAA
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 103 1.00
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.23
Consensus pattern (52 bp):
GAAAGAAAGCCTGTGTGGTGTAATATGAAAGAAAGCCTGTGTGGCATAATAT
Found at i:36678197 original size:26 final size:26
Alignment explanation
Indices: 36678029--36678230 Score: 215
Period size: 26 Copynumber: 7.7 Consensus size: 26
36678019 AACACGTCAA
* * *
36678029 GAAAGAAAGCCTGTGTAGTGTAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
*
36678055 GAAAGAAAGCCTGTGTGGCGTAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
* * *
36678081 GAAAGAAAGCTTGTGTGGTGTAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
* * *
36678107 GAAAGAAAGCCTGTGAGGCATAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
36678133 GAAAGAAAGCCTATGTGGCGTAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
* * *
36678159 GGAAGAAAGCCTATGTGGCTTAACAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
* * **
36678185 GAAAGAGAGCCTATATGGCAAAATAT
1 GAAAGAAAGCCTATGTGGCGTAATAT
* * *
36678211 GGAAGGAATGCCTTTGTGGC
1 -GAAAGAAAGCCTATGTGGC
36678231 AAGCTCTGTA
Statistics
Matches: 150, Mismatches: 25, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 136 0.91
27 14 0.09
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.24
Consensus pattern (26 bp):
GAAAGAAAGCCTATGTGGCGTAATAT
Found at i:36678264 original size:27 final size:26
Alignment explanation
Indices: 36678213--36678268 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
36678203 CAAAATATGG
* *
36678213 AAGGAATGCCTTTGTGGCAAGCTCTGT
1 AAGGAACGCATTTGTGGCAAGCTCT-T
36678240 AAGGAACGCATTTGTGGCACA-CTCTT
1 AAGGAACGCATTTGTGGCA-AGCTCTT
36678266 AAG
1 AAG
36678269 ATTCACCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
AAGGAACGCATTTGTGGCAAGCTCTT
Found at i:36680512 original size:20 final size:20
Alignment explanation
Indices: 36680487--36680525 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
36680477 ACCCAATTAA
36680487 AAATTA-TTTTAAAGTGTTTT
1 AAATTACTTTTAAA-TGTTTT
36680507 AAATTACTTTTAAATGTTT
1 AAATTACTTTTAAATGTTT
36680526 ATAAGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54
Consensus pattern (20 bp):
AAATTACTTTTAAATGTTTT
Found at i:36684614 original size:27 final size:27
Alignment explanation
Indices: 36684577--36684808 Score: 272
Period size: 27 Copynumber: 8.6 Consensus size: 27
36684567 TAAATTGTAC
36684577 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
36684604 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36684631 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36684657 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36684685 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36684713 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
36684740 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
* *
36684767 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
36684794 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36684809 GACTCAATAT
Statistics
Matches: 182, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 158 0.87
28 23 0.13
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36684716 original size:109 final size:108
Alignment explanation
Indices: 36684578--36684787 Score: 325
Period size: 109 Copynumber: 1.9 Consensus size: 108
36684568 AAATTGTACA
* *
36684578 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
36684643 GCGAAATGA--ATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGATGATAT-A-GCACTAAGTGTGCGAATTGACCATGCG
*
36684686 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** *
36684751 TGCGAGTTGATGATATAGCACTAAGTGTGCGAGTTGA
65 TGCGAAATGATGATATAGCACTAAGTGTGCGAATTGA
36684788 TGATATAGCA
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
108 15 0.16
109 73 0.78
110 1 0.01
111 4 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGATGATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:36684799 original size:109 final size:108
Alignment explanation
Indices: 36684574--36684808 Score: 321
Period size: 109 Copynumber: 2.2 Consensus size: 108
36684564 GAGTAAATTG
* *
36684574 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAA
36684639 GTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCA
66 GTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCA
* * *
36684682 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTA
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTA
** * **
36684747 AGTGTGCGAGTTG-ATGAT-ATAGCACTAAGTGTGCGAGTTGATGA
65 AGTGTGCGAAATGAAT-ATGAT-GCACTAAGTGTGCGAATTGACCA
* *
36684791 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36684809 GACTCAATAT
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
108 21 0.19
109 89 0.81
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAA
GTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCA
Found at i:36692754 original size:27 final size:27
Alignment explanation
Indices: 36692717--36692921 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
36692707 TAAATTGTAC
36692717 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
36692744 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36692771 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36692797 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36692825 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36692853 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
36692880 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
36692907 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36692922 GACTCAATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36695414 original size:6 final size:6
Alignment explanation
Indices: 36695385--36695438 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
36695375 AATCAGAAAT
* *
36695385 AAATAA ACAA-AA AATATAAA AAATAA AAATAA AAACAA AAATAA AAACAA
1 AAATAA A-AATAA AA-AT-AA AAATAA AAATAA AAATAA AAATAA AAATAA
36695435 AAAT
1 AAAT
36695439 TATTAAAAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 1 0.03
6 31 0.77
7 4 0.10
8 4 0.10
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:36695424 original size:12 final size:12
Alignment explanation
Indices: 36695385--36695438 Score: 65
Period size: 12 Copynumber: 4.3 Consensus size: 12
36695375 AATCAGAAAT
36695385 AAATAAACAA-AA
1 AAATAAA-AACAA
*
36695397 AATATAAAAAATAA
1 AA-AT-AAAAACAA
36695411 AAATAAAAACAA
1 AAATAAAAACAA
36695423 AAATAAAAACAA
1 AAATAAAAACAA
36695435 AAAT
1 AAAT
36695439 TATTAAAAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
12 25 0.66
13 6 0.16
14 7 0.18
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (12 bp):
AAATAAAAACAA
Found at i:36696509 original size:17 final size:18
Alignment explanation
Indices: 36696482--36696515 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
36696472 AAATTATTAT
36696482 CAATATTTTTTAAATTTA
1 CAATATTTTTTAAATTTA
36696500 CAAT-TTTTTTAAATTT
1 CAATATTTTTTAAATTT
36696516 TTTATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (18 bp):
CAATATTTTTTAAATTTA
Found at i:36698707 original size:69 final size:69
Alignment explanation
Indices: 36698621--36698760 Score: 226
Period size: 69 Copynumber: 2.0 Consensus size: 69
36698611 ACTTGACATA
36698621 CTTATTGGACATCAAGGTGGATGAACAACTGTTTCGAGCCCTTGCTCAATATTGGAAACCTACAT
1 CTTATTGGACATCAAGGTGGATGAACAACTGTTTCGAGCCCTTGCTCAATATTGGAAACCTACAT
*
36698686 GTAG
66 ATAG
* * * * *
36698690 CTTATTGGACATCAAGGTGGATGAATAATTGTTTCGGGCCCTTGCTCAATATTGGAACCCTGCAT
1 CTTATTGGACATCAAGGTGGATGAACAACTGTTTCGAGCCCTTGCTCAATATTGGAAACCTACAT
36698755 ATAG
66 ATAG
36698759 CT
1 CT
36698761 GTTTCACTTT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (69 bp):
CTTATTGGACATCAAGGTGGATGAACAACTGTTTCGAGCCCTTGCTCAATATTGGAAACCTACAT
ATAG
Done.