Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 129 of 189
Found at i:37014321 original size:24 final size:24
Alignment explanation
Indices: 37014275--37014322 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
37014265 TTTTTTAAAA
*
37014275 AATATATTTATATTATATCATTTT
1 AATATATTTATATTATATAATTTT
*
37014299 AATAT-TTTATAATTTTATAATTTT
1 AATATATTTAT-ATTATATAATTTT
37014323 TTATATAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (24 bp):
AATATATTTATATTATATAATTTT
Found at i:37019609 original size:23 final size:23
Alignment explanation
Indices: 37019583--37019630 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
37019573 TCAGGCTCAA
* * *
37019583 TTCATTTAGCGTTCGCGAACATG
1 TTCATTTAACATTCGCAAACATG
37019606 TTCATTTAACATTCGCAAACATG
1 TTCATTTAACATTCGCAAACATG
37019629 TT
1 TT
37019631 TGTTTATATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (23 bp):
TTCATTTAACATTCGCAAACATG
Found at i:37030017 original size:34 final size:32
Alignment explanation
Indices: 37029961--37030024 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 32
37029951 ATTTTTAACA
*
37029961 CTGAGAAATGTTGTATAGTGGAGGGATGGAGAGG
1 CTGAGAAATGTTGAATAGTGGA--GATGGAGAGG
37029995 CTGAGAAATGTTGAAATA-TGGAGATGGAGA
1 CTGAGAAATGTTG-AATAGTGGAGATGGAGA
37030025 CCCCTTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 8 0.29
34 17 0.61
35 3 0.11
ACGTcount: A:0.34, C:0.03, G:0.39, T:0.23
Consensus pattern (32 bp):
CTGAGAAATGTTGAATAGTGGAGATGGAGAGG
Found at i:37038061 original size:20 final size:20
Alignment explanation
Indices: 37038036--37038073 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37038026 TTAATAATTC
*
37038036 AATAAATTTAAAAATTAGAT
1 AATAAAATTAAAAATTAGAT
*
37038056 AATAAAATTAAAATTTAG
1 AATAAAATTAAAAATTAG
37038074 GAGAAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
AATAAAATTAAAAATTAGAT
Found at i:37042082 original size:12 final size:12
Alignment explanation
Indices: 37042057--37042095 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
37042047 TACTTCTTCT
* *
37042057 TTACTTACTCAC
1 TTACTTGCTTAC
*
37042069 TTACTTGTTTAC
1 TTACTTGCTTAC
37042081 TTACTTGCTTAC
1 TTACTTGCTTAC
37042093 TTA
1 TTA
37042096 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:37042421 original size:50 final size:50
Alignment explanation
Indices: 37042359--37042491 Score: 131
Period size: 50 Copynumber: 2.7 Consensus size: 50
37042349 AAATGTCAAA
* * ** * *
37042359 TCCCAGATATGGTCTTACACATGAGTTCTCATATCGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACACAGGACCTCTCATATCGGTGCCAACGCCATG
**** * *
37042409 TCCCAGACATGGTCTTATGGGGGACCTCTTATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACACAGGACCTCTCATATCGGTGCCAACGCCATG
***
37042459 TCCCAGACATGGTCTTACGTGGGACCTCTCATA
1 TCCCAGACATGGTCTTACACAGGACCTCTCATA
37042492 ACCTCAATAA
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACACAGGACCTCTCATATCGGTGCCAACGCCATG
Found at i:37043240 original size:56 final size:56
Alignment explanation
Indices: 37043154--37043273 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
37043144 ACAAGGGATG
37043154 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
37043210 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
37043266 ATGGGCAA
1 ATGGGCAA
37043274 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:37044809 original size:49 final size:49
Alignment explanation
Indices: 37044730--37045231 Score: 767
Period size: 49 Copynumber: 10.4 Consensus size: 49
37044720 TATTTGAATA
*
37044730 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
37044777 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37044826 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37044875 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37044924 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
37044973 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
37045020 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37045069 AATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37045116 AATGTGAACA-TG--CATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
37045163 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
37045210 GATGTGGAAGTGTATAAATATG
1 AATGTGAAAGTGTATATATATG
37045232 ATAAGTCCCG
Statistics
Matches: 431, Mismatches: 16, Indels: 14
0.93 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 186 0.43
49 243 0.56
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:37044838 original size:96 final size:95
Alignment explanation
Indices: 37044730--37045236 Score: 763
Period size: 96 Copynumber: 5.3 Consensus size: 95
37044720 TATTTGAATA
37044730 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TAT
*
37044794 ATATGTGATAAGGCCTAATGGCCAATGTGATG
64 ATATGTGATAAGGCCGAATGGCCAATGTGATG
*
37044826 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TA
* *
37044891 TATATGTGATAAGGCCTAATGGCCGATGTGATG
63 TATATGTGATAAGGCCGAATGGCCAATGTGATG
*
37044924 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
37044989 TATGTGATAAGGCCGAATGGCCAATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37045020 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
37045084 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
64 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
37045116 AATGTGAACA-TG-CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAA-AGTGATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
37045179 TATGTGATAAGGCCGAATGGCCAATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
37045210 GATGTGGAAGTG-TATAAATATGATAAG
1 AATGTGAAAGTGATATATATGTGATAAG
37045237 TCCCGAAGGG
Statistics
Matches: 385, Mismatches: 20, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
93 2 0.01
94 95 0.25
96 145 0.38
97 2 0.01
98 141 0.37
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (95 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:37067893 original size:17 final size:17
Alignment explanation
Indices: 37067871--37067910 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
37067861 AAAGAGATAA
37067871 AATTTTTAATTTAAT-TT
1 AATTTTT-ATTTAATGTT
37067888 AATTTTTATTTAATGTT
1 AATTTTTATTTAATGTT
37067905 AATTTT
1 AATTTT
37067911 AAATATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (17 bp):
AATTTTTATTTAATGTT
Found at i:37071916 original size:68 final size:68
Alignment explanation
Indices: 37071820--37072016 Score: 216
Period size: 62 Copynumber: 3.0 Consensus size: 68
37071810 TTTAATAGAT
* * *
37071820 TTAATATTTAATTTAATTTAATACTTATCTTAAT-AATATTTTATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTTAATTTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
37071884 TATC
66 TA-C
* * *
37071888 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATTCTATTAAGTT-A-A-T-AA--
1 TTAATATTAAATTTAATTTAATATTTATC-T-TA-ATAAATATTATATTAATTTAATATTAAAGT
37071947 G---AC
63 GATTAC
* *
37071950 TTAATATTAAATTTAATATAATATTTATCTTGATAAATATTATATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTTAATTTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
37072015 TA
66 TA
37072017 AGTTTAATTA
Statistics
Matches: 106, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
59 17 0.16
60 2 0.02
61 2 0.02
62 29 0.27
63 3 0.03
65 1 0.01
66 1 0.01
68 29 0.27
69 2 0.02
70 3 0.03
71 3 0.03
72 14 0.13
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.50
Consensus pattern (68 bp):
TTAATATTAAATTTAATTTAATATTTATCTTAATAAATATTATATTAATTTAATATTAAAGTGAT
TAC
Found at i:37072931 original size:21 final size:21
Alignment explanation
Indices: 37072891--37072929 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
37072881 AAATCATGGA
37072891 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
37072912 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
37072930 TCGTAGGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:37080167 original size:15 final size:16
Alignment explanation
Indices: 37080149--37080185 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
37080139 TTTTTAAAAT
37080149 TTAATATTA-TGTTAA-
1 TTAA-ATTATTGTTAAG
37080164 TTAAATTATTGTTAAG
1 TTAAATTATTGTTAAG
37080180 TTAAAT
1 TTAAAT
37080186 GTAAAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.20
15 10 0.50
16 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (16 bp):
TTAAATTATTGTTAAG
Found at i:37088261 original size:21 final size:20
Alignment explanation
Indices: 37088216--37088261 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
37088206 TTGTTGGGAT
37088216 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
37088235 GCTTGAATTTAATTC-ATATTA
1 GGTTGAATTTAA-TCAAT-TTA
37088256 GGTTGA
1 GGTTGA
37088262 TTGTATTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:37093481 original size:29 final size:29
Alignment explanation
Indices: 37093435--37093495 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
37093425 TATACTTGCA
*
37093435 AGCTTGTTGAAGACAGTAAGCAAAGTGCG
1 AGCTTGTTGAAGACAGTAACCAAAGTGCG
* *
37093464 AGCTTGTTGAAGAGAGTAACCAAAGTGTG
1 AGCTTGTTGAAGACAGTAACCAAAGTGCG
37093493 AGC
1 AGC
37093496 CTATCAAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.21
Consensus pattern (29 bp):
AGCTTGTTGAAGACAGTAACCAAAGTGCG
Found at i:37098671 original size:21 final size:19
Alignment explanation
Indices: 37098636--37098694 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 19
37098626 CTTCTTCTTG
*
37098636 AATTTTTATG-AATTTTTT
1 AATTTTTTTGAAATTTTTT
*
37098654 ATTTTTATTTTGAAATTTTCTT
1 A-ATTT-TTTTGAAATTTT-TT
37098676 AATTTTTTTGAATATTTTT
1 AATTTTTTTGAA-ATTTTT
37098695 ATAAACTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.03
19 3 0.09
20 12 0.36
21 14 0.42
22 3 0.09
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (19 bp):
AATTTTTTTGAAATTTTTT
Found at i:37108880 original size:12 final size:12
Alignment explanation
Indices: 37108863--37108887 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37108853 GGATGCTTCC
37108863 AAAATGGAAATG
1 AAAATGGAAATG
37108875 AAAATGGAAATG
1 AAAATGGAAATG
37108887 A
1 A
37108888 TTCATTTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:37117156 original size:15 final size:16
Alignment explanation
Indices: 37117115--37117157 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
37117105 AAAGACATTA
*
37117115 TATAATAACAAATCAAC
1 TATAA-AACAAAACAAC
37117132 TATAAAACAAAACAA-
1 TATAAAACAAAACAAC
*
37117147 TATAACACAAA
1 TATAAAACAAA
37117158 TATATCATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 9 0.38
17 5 0.21
ACGTcount: A:0.65, C:0.16, G:0.00, T:0.19
Consensus pattern (16 bp):
TATAAAACAAAACAAC
Found at i:37120642 original size:10 final size:9
Alignment explanation
Indices: 37120621--37120662 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
37120611 CACAAAAATG
*
37120621 TTTTTCTAT
1 TTTTTTTAT
37120630 TTTTTTTAT
1 TTTTTTTAT
37120639 TTTTTTTACT
1 TTTTTTTA-T
*
37120649 TTTCTTTAT
1 TTTTTTTAT
37120658 TTTTT
1 TTTTT
37120663 AAATTTTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 21 0.72
10 8 0.28
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:37120669 original size:26 final size:26
Alignment explanation
Indices: 37120622--37120671 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
37120612 ACAAAAATGT
**
37120622 TTTTCTATTTTTTTTATTTTTTTTAC
1 TTTTCTATTTTTTTTAAATTTTTTAC
37120648 TTTTCT-TTATTTTTTAAATTTTTT
1 TTTTCTATT-TTTTTTAAATTTTTT
37120672 GTGGGAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.10
26 19 0.90
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (26 bp):
TTTTCTATTTTTTTTAAATTTTTTAC
Found at i:37120670 original size:19 final size:18
Alignment explanation
Indices: 37120628--37120671 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
37120618 ATGTTTTTCT
*
37120628 ATTTTTTTTATTTTTTTTA
1 ATTTTTTTTA-TTTTTTAA
* *
37120647 CTTTTCTTTATTTTTTAA
1 ATTTTTTTTATTTTTTAA
37120665 ATTTTTT
1 ATTTTTT
37120672 GTGGGAAATA
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.80
Consensus pattern (18 bp):
ATTTTTTTTATTTTTTAA
Found at i:37127507 original size:19 final size:19
Alignment explanation
Indices: 37127483--37127521 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
37127473 GGCTAATTAC
37127483 ATCCCAAAAAATCTGCTAT
1 ATCCCAAAAAATCTGCTAT
*
37127502 ATCCCAAATAATCTGCTAT
1 ATCCCAAAAAATCTGCTAT
37127521 A
1 A
37127522 CCAATTAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.26, G:0.05, T:0.28
Consensus pattern (19 bp):
ATCCCAAAAAATCTGCTAT
Found at i:37131484 original size:15 final size:15
Alignment explanation
Indices: 37131461--37131501 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
37131451 CTTTTGTTCA
37131461 AATCTTGTTGTAGAT
1 AATCTTGTTGTAGAT
* *
37131476 AATCGTGTTGTGGAT
1 AATCTTGTTGTAGAT
37131491 AATCTTGTTGT
1 AATCTTGTTGT
37131502 TTATTGTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.46
Consensus pattern (15 bp):
AATCTTGTTGTAGAT
Found at i:37133023 original size:3 final size:3
Alignment explanation
Indices: 37133015--37133039 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
37133005 ATATTAAGAG
37133015 ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA A
37133040 AAGGAAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:37136880 original size:140 final size:140
Alignment explanation
Indices: 37136628--37136908 Score: 553
Period size: 140 Copynumber: 2.0 Consensus size: 140
37136618 ACACCTTGAC
37136628 AGCACTGGCAAGTAGTGTACCATCTGAACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
1 AGCACTGGCAAGTAGTGTACCATCTGAACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
37136693 AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
66 AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
37136758 AACTATGATT
131 AACTATGATT
*
37136768 AGCACTGGCAAGTAGTGTACCATCTGCACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
1 AGCACTGGCAAGTAGTGTACCATCTGAACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
37136833 AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
66 AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
37136898 AACTATGATT
131 AACTATGATT
37136908 A
1 A
37136909 AAGAAATGCA
Statistics
Matches: 140, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 140 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (140 bp):
AGCACTGGCAAGTAGTGTACCATCTGAACTACATGTCAGCACCTAATACGCATTTATTAATTCTC
AACAGGGTCATGCTGATTGAACACGAGAAACTTCGAGGAAAGATATAAACAATTATATGAGTCCA
AACTATGATT
Found at i:37140193 original size:17 final size:17
Alignment explanation
Indices: 37140171--37140208 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
37140161 TACGAACTAA
*
37140171 TTGGTGAATCCTGTGTT
1 TTGGTGAATCATGTGTT
*
37140188 TTGGTGAATTATGTGTT
1 TTGGTGAATCATGTGTT
37140205 TTGG
1 TTGG
37140209 CGAGATTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.13, C:0.05, G:0.32, T:0.50
Consensus pattern (17 bp):
TTGGTGAATCATGTGTT
Found at i:37150954 original size:39 final size:40
Alignment explanation
Indices: 37150845--37150980 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 40
37150835 TAGATAGACC
* * * **
37150845 AAACACACCAAACAGAAACTCATAAGAGCTGATCCAATCG
1 AAACACGCCAAATAGAAGCTCATAAGAGCTGATCCACCCG
* * * *
37150885 AAATACGCCAAACAAAAGCTCATAAGAGCTGGTCCACCCG
1 AAACACGCCAAATAGAAGCTCATAAGAGCTGATCCACCCG
37150925 AAACACGCC-AATAGAAGCTCATAAGAGCTGATCCACCCG
1 AAACACGCCAAATAGAAGCTCATAAGAGCTGATCCACCCG
* *
37150964 AATCACACCAAATAGAA
1 AAACACGCCAAATAGAA
37150981 AGTATAACAT
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 34 0.41
40 48 0.59
ACGTcount: A:0.44, C:0.29, G:0.15, T:0.12
Consensus pattern (40 bp):
AAACACGCCAAATAGAAGCTCATAAGAGCTGATCCACCCG
Found at i:37152692 original size:13 final size:13
Alignment explanation
Indices: 37152641--37152695 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
37152631 AGCATGCGTG
*
37152641 AAACATATCTTTA
1 AAACATATCTTGA
* *
37152654 AAACATAGCTTAA
1 AAACATATCTTGA
*
37152667 AAACATAACTTGA
1 AAACATATCTTGA
*
37152680 AAACATATTTTGA
1 AAACATATCTTGA
37152693 AAA
1 AAA
37152696 TAGAGTATTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.53, C:0.13, G:0.05, T:0.29
Consensus pattern (13 bp):
AAACATATCTTGA
Found at i:37165930 original size:16 final size:16
Alignment explanation
Indices: 37165906--37165939 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37165896 ATTAAATCCT
37165906 AATTACTAAAGAAATA
1 AATTACTAAAGAAATA
* *
37165922 AATTCCTAAAGAACTA
1 AATTACTAAAGAAATA
37165938 AA
1 AA
37165940 AAATAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.59, C:0.12, G:0.06, T:0.24
Consensus pattern (16 bp):
AATTACTAAAGAAATA
Found at i:37167354 original size:10 final size:10
Alignment explanation
Indices: 37167339--37167363 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37167329 TTGGCACTTA
37167339 TCACAGTTCT
1 TCACAGTTCT
37167349 TCACAGTTCT
1 TCACAGTTCT
37167359 TCACA
1 TCACA
37167364 TAAGCGTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (10 bp):
TCACAGTTCT
Found at i:37172386 original size:16 final size:17
Alignment explanation
Indices: 37172359--37172394 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
37172349 AGAGAGTTGA
37172359 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
37172376 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
37172392 GAG
1 GAG
37172395 GAATGCCTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.53, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:37184589 original size:7 final size:7
Alignment explanation
Indices: 37184577--37184606 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
37184567 TATTAGTAAT
37184577 TGTTAAA
1 TGTTAAA
37184584 TGTTAAA
1 TGTTAAA
37184591 TGTTAAA
1 TGTTAAA
*
37184598 TGTTCAA
1 TGTTAAA
37184605 TG
1 TG
37184607 AATTACTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.43
Consensus pattern (7 bp):
TGTTAAA
Found at i:37189640 original size:35 final size:35
Alignment explanation
Indices: 37189594--37189701 Score: 135
Period size: 35 Copynumber: 3.1 Consensus size: 35
37189584 TTATTCCAGT
37189594 GACCTATATACCATTTACACGGTGTTGCCCCAAAG
1 GACCTATATACCATTTACACGGTGTTGCCCCAAAG
* ** * * *
37189629 GACCTATATACCATTTATATTGTGTTTCCTCAAAA
1 GACCTATATACCATTTACACGGTGTTGCCCCAAAG
* * *
37189664 GACCTATATACCATTTTCACGGTATCGCCCCAAAG
1 GACCTATATACCATTTACACGGTGTTGCCCCAAAG
37189699 GAC
1 GAC
37189702 AAATAGATAA
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 58 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (35 bp):
GACCTATATACCATTTACACGGTGTTGCCCCAAAG
Found at i:37193704 original size:15 final size:15
Alignment explanation
Indices: 37193679--37193713 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
37193669 GACTCTATTT
*
37193679 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
37193693 TAATTAATATTAAGA
1 TAATTAATATTAAGA
37193708 TAATTA
1 TAATTA
37193714 TTAAAGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:37199981 original size:4 final size:4
Alignment explanation
Indices: 37199972--37200049 Score: 63
Period size: 4 Copynumber: 18.5 Consensus size: 4
37199962 AATTTTTATT
*
37199972 TTTA TTTA TTTA TTTA TTTA -TTA TTTTA TTTTA TTTTC TTTA CTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA -TTTA -TTTA -TTTA TTTA -TTTA
37200019 TTTA -TTA CTTTA TTTTA TTT- TATTA TTTA TT
1 TTTA TTTA -TTTA -TTTA TTTA T-TTA TTTA TT
37200050 ACTTATTTGG
Statistics
Matches: 64, Mismatches: 3, Indels: 14
0.79 0.04 0.17
Matches are distributed among these distances:
3 7 0.11
4 33 0.52
5 24 0.38
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:37200002 original size:5 final size:5
Alignment explanation
Indices: 37199965--37200042 Score: 56
Period size: 5 Copynumber: 15.4 Consensus size: 5
37199955 GCAACCCAAT
37199965 TTTTA TTTT- TATTTA -TTTA -TTTA TTTATTA TTTTA TTTTA TTTT-
1 TTTTA TTTTA T-TTTA TTTTA TTTTA -TT-TTA TTTTA TTTTA TTTTA
* * *
37200009 CTTTA CTTTA TTTATTA CTTTA TTTTA TTTTA TT
1 TTTTA TTTTA -TT-TTA TTTTA TTTTA TTTTA TT
37200043 ATTTATTACT
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
4 12 0.20
5 38 0.62
6 5 0.08
7 6 0.10
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:37200019 original size:31 final size:30
Alignment explanation
Indices: 37199965--37200057 Score: 120
Period size: 31 Copynumber: 3.1 Consensus size: 30
37199955 GCAACCCAAT
37199965 TTTTATTTT-TATTTATTTATTTATTTATTA
1 TTTTATTTTAT-TTTATTTATTTATTTATTA
*
37199995 TTTTATTTTATTTTCTTTACTTTATTTATTA
1 TTTTATTTTATTTTATTTA-TTTATTTATTA
*
37200026 CTTTATTTTATTTTA-TTATTTA-TTACTTA
1 TTTTATTTTATTTTATTTATTTATTTA-TTA
37200055 TTT
1 TTT
37200058 GGATATTAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
28 3 0.05
29 9 0.16
30 19 0.34
31 25 0.45
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (30 bp):
TTTTATTTTATTTTATTTATTTATTTATTA
Found at i:37201761 original size:15 final size:15
Alignment explanation
Indices: 37201736--37201770 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
37201726 GACTCTATTT
*
37201736 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
37201750 TAATTAATATTAAGA
1 TAATTAATATTAAGA
37201765 TAATTA
1 TAATTA
37201771 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:37213420 original size:57 final size:58
Alignment explanation
Indices: 37213335--37213445 Score: 161
Period size: 57 Copynumber: 1.9 Consensus size: 58
37213325 AAAAATGGTG
* *
37213335 AAATAGAGAAATGGGAAACATTAGGAAATGAATGAGGTTTTCTCCCAAATGAAAATGA
1 AAATAGAGAAATGAGAAACATTAGGAAATGAATGAGGTTTTCTCCAAAATGAAAATGA
* * * *
37213393 AAATAGGGAAAT-AGAATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAA
1 AAATAGAGAAATGAGAAACATTAGGAAATGAATGAGGTTTTCTCCAAAATGAAA
37213446 TTAAAAATGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 36 0.77
58 11 0.23
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.25
Consensus pattern (58 bp):
AAATAGAGAAATGAGAAACATTAGGAAATGAATGAGGTTTTCTCCAAAATGAAAATGA
Found at i:37215714 original size:49 final size:49
Alignment explanation
Indices: 37215654--37215770 Score: 123
Period size: 49 Copynumber: 2.4 Consensus size: 49
37215644 GTTAATAACT
* * *
37215654 AACATGTCCTACCAGTGGCCCATCATACA-CGT-CAATCTAGTTAGCAACG
1 AACATGCCCTACCAGTGGCCC-TAAAACATC-TACAATCTAGTTAGCAACG
* * * *
37215703 AACATGCCCTACCAATGG-TCTAAAACATCTACCAATCTAGTTTGCAACT
1 AACATGCCCTACCAGTGGCCCTAAAACATCTA-CAATCTAGTTAGCAACG
37215752 AACATGCCCTACCAGTGGC
1 AACATGCCCTACCAGTGGC
37215771 TTACCGTAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
47 6 0.11
48 2 0.04
49 48 0.86
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.23
Consensus pattern (49 bp):
AACATGCCCTACCAGTGGCCCTAAAACATCTACAATCTAGTTAGCAACG
Found at i:37216230 original size:34 final size:34
Alignment explanation
Indices: 37216183--37216253 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
37216173 CTCTCGTAGA
*
37216183 ACTAACACGTGGCTAACATGCAAAGCTAACACAT
1 ACTAACACATGGCTAACATGCAAAGCTAACACAT
37216217 ACTAACACATGGCTAACATGCAAAGCTAACACAT
1 ACTAACACATGGCTAACATGCAAAGCTAACACAT
37216251 ACT
1 ACT
37216254 CTATTGTGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.18
Consensus pattern (34 bp):
ACTAACACATGGCTAACATGCAAAGCTAACACAT
Found at i:37219925 original size:7 final size:7
Alignment explanation
Indices: 37219909--37219943 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
37219899 AGCACTATCA
37219909 ATATGTG
1 ATATGTG
*
37219916 ATACGTG
1 ATATGTG
37219923 ATATGTG
1 ATATGTG
37219930 ATATGTG
1 ATATGTG
37219937 ATATGTG
1 ATATGTG
37219944 TTGATGAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.29, C:0.03, G:0.29, T:0.40
Consensus pattern (7 bp):
ATATGTG
Found at i:37221854 original size:22 final size:21
Alignment explanation
Indices: 37221811--37221877 Score: 53
Period size: 22 Copynumber: 3.0 Consensus size: 21
37221801 ATATCGCAAA
* **
37221811 ATCGAACCATTGGTATCACGAT
1 ATCG-ACCCTTGGTATGGCGAT
37221833 ATCGCACCCTTGGTATGGCGAT
1 ATCG-ACCCTTGGTATGGCGAT
* * *
37221855 ACCAGACCCTTAGTATGGAGAT
1 ATC-GACCCTTGGTATGGCGAT
37221877 A
1 A
37221878 CCAGACCCCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
22 36 0.97
23 1 0.03
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (21 bp):
ATCGACCCTTGGTATGGCGAT
Found at i:37221878 original size:22 final size:22
Alignment explanation
Indices: 37221838--37221885 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
37221828 ACGATATCGC
* *
37221838 ACCCTTGGTATGGCGATACCAG
1 ACCCTTAGTATGGAGATACCAG
37221860 ACCCTTAGTATGGAGATACCAG
1 ACCCTTAGTATGGAGATACCAG
37221882 ACCC
1 ACCC
37221886 CTAGCATCGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (22 bp):
ACCCTTAGTATGGAGATACCAG
Found at i:37221900 original size:22 final size:22
Alignment explanation
Indices: 37221853--37221927 Score: 73
Period size: 22 Copynumber: 3.4 Consensus size: 22
37221843 TGGTATGGCG
* * *
37221853 ATACCAGACCCTTAGTAT-GGA
1 ATACCAGACCCCTAGCATCGCA
37221874 GATACCAGACCCCTAGCATCGCA
1 -ATACCAGACCCCTAGCATCGCA
*
37221897 ATACC-GAACCCCTAGCATCGCG
1 ATACCAG-ACCCCTAGCATCGCA
*
37221919 ATACTAGAC
1 ATACCAGAC
37221928 TCATTGCATG
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 1 0.02
22 41 0.91
23 3 0.07
ACGTcount: A:0.32, C:0.33, G:0.17, T:0.17
Consensus pattern (22 bp):
ATACCAGACCCCTAGCATCGCA
Found at i:37222135 original size:22 final size:22
Alignment explanation
Indices: 37222110--37222167 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
37222100 GGGACCTTTG
* *
37222110 GTATCGCGATAGCGAACACCTA
1 GTATGGCGATAGCAAACACCTA
* * *
37222132 GTATGGTGATACCAAACCCCTA
1 GTATGGCGATAGCAAACACCTA
37222154 GTATGGCGATAGCA
1 GTATGGCGATAGCA
37222168 GACCCTGGCA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (22 bp):
GTATGGCGATAGCAAACACCTA
Found at i:37222158 original size:287 final size:288
Alignment explanation
Indices: 37221639--37222208 Score: 774
Period size: 287 Copynumber: 2.0 Consensus size: 288
37221629 GGTTTTAAAT
* * *
37221639 TCATTGCATGTTGAATTTTAGGGATTTAGGGGTCTTGTTTTGTGTTTAGAGGAAGATGAAAATTT
1 TCATTGCATGTTGAATTTTAGGGATTTAGGGGTCCTATTTTGTGTTTAGAGGAAGATGAAAAATT
** * * * *
37221704 TGTGAACTTTTGAGAACTATACAGTTGTATCACGACACCTAAGGCTGGATATCGCAATACCCTTG
66 TGTGAAAGTTTGACAACTATACAGTGGTATCACGACACCCAAGGCTGGATATCGCAATACCCTGG
*
37221769 ATAGTTTCGAAAGAAGGCCAAAAATTTTATGGATATCGCAAAATCGAACCATTGGTATCACGATA
131 ATAGTTTCGAAAGAAGGCCAAAAATCTTATGGATATCGCAAAATCGAACCATTGGTATCACGATA
* * * * *
37221834 TCGCACCCTTGGTATGGCGATACCAGACCCTTAGTATGGAGATACCAGACCCCTAGCATCGCAAT
196 GCGAACCCTTAGTATGGCGATACCAAACCCCTAGTATGGAGATACCAGA-CCCTAGCATCGCAAT
37221899 ACCGAA-CCCCTAGCATCGCGATACTAGAC
260 ACC-AAGCCCCTAGCATCGCGATACTAGAC
37221928 TCATTGCATGTTGAATTTTAGGGATTTAGGGGTCCTATTTTGTGTTTAGAGGAAGAT-AAAAATT
1 TCATTGCATGTTGAATTTTAGGGATTTAGGGGTCCTATTTTGTGTTTAGAGGAAGATGAAAAATT
*
37221992 T-TGAAAGTTTGACAACTATACAGTGGTATCACGACACCCAATGG-TGGATATCGCAATATCCTG
66 TGTGAAAGTTTGACAACTATACAGTGGTATCACGACACCCAA-GGCTGGATATCGCAATACCCTG
** * * * * * * *
37222055 GATAGTTTCGAGGGGAGGCCAAAACTCTTATGGATATCGCGATA-CGGGACCTTTGGTATCGCGA
130 GATAGTTTCGAAAGAAGGCCAAAAATCTTATGGATATCGCAAAATC-GAACCATTGGTATCACGA
* * * * **
37222119 TAGCGAACACC-TAGTATGGTGATACCAAACCCCTAGTATGGCGATAGCAGACCCTGGCATCGTG
194 TAGCGAAC-CCTTAGTATGGCGATACCAAACCCCTAGTATGGAGATACCAGACCCTAGCATCGCA
37222183 ATACCAAGCCCCTAGCATCGCGATAC
258 ATACCAAGCCCCTAGCATCGCGATAC
37222209 CGGACCTCTG
Statistics
Matches: 246, Mismatches: 31, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
285 2 0.01
286 34 0.14
287 144 0.59
288 11 0.04
289 55 0.22
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (288 bp):
TCATTGCATGTTGAATTTTAGGGATTTAGGGGTCCTATTTTGTGTTTAGAGGAAGATGAAAAATT
TGTGAAAGTTTGACAACTATACAGTGGTATCACGACACCCAAGGCTGGATATCGCAATACCCTGG
ATAGTTTCGAAAGAAGGCCAAAAATCTTATGGATATCGCAAAATCGAACCATTGGTATCACGATA
GCGAACCCTTAGTATGGCGATACCAAACCCCTAGTATGGAGATACCAGACCCTAGCATCGCAATA
CCAAGCCCCTAGCATCGCGATACTAGAC
Found at i:37231513 original size:13 final size:13
Alignment explanation
Indices: 37231497--37231521 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37231487 TTATACTCTT
37231497 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
37231510 TTTTTTCTTTTT
1 TTTTTTCTTTTT
37231522 TTGAGAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:37232497 original size:6 final size:6
Alignment explanation
Indices: 37232488--37232520 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
37232478 AAAGTCTAAC
*
37232488 AAAATA AAAATA AACATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
37232521 CAAATAGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:37234280 original size:21 final size:20
Alignment explanation
Indices: 37234227--37234308 Score: 67
Period size: 21 Copynumber: 4.0 Consensus size: 20
37234217 AGAAATAGAT
* * *
37234227 AATAAACAACTAAAATAAAAA
1 AATAAATAAATAAAA-AATAA
** *
37234248 AATAAAGGAATAAAATAATAG
1 AATAAATAAATAAAA-AATAA
37234269 AATAAATAAATAAAGAAGATAA
1 AATAAATAAATAAA-AA-ATAA
37234291 AATAAAT-AATAAAAAATA
1 AATAAATAAATAAAAAATA
37234309 GGAAAATGGG
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
19 3 0.06
20 2 0.04
21 35 0.69
22 11 0.22
ACGTcount: A:0.73, C:0.02, G:0.06, T:0.18
Consensus pattern (20 bp):
AATAAATAAATAAAAAATAA
Found at i:37234301 original size:29 final size:28
Alignment explanation
Indices: 37234244--37234308 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 28
37234234 AACTAAAATA
*
37234244 AAAAAATAAAGGAATAAAATAATAGAAT
1 AAAAAATAAAGAAATAAAATAATAGAAT
*
37234272 AAATAAATAAAGAAGATAAAATAA-ATAAT
1 AAA-AAATAAAGAA-ATAAAATAATAGAAT
37234301 AAAAAATA
1 AAAAAATA
37234309 GGAAAATGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 8 0.24
29 16 0.48
30 9 0.27
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (28 bp):
AAAAAATAAAGAAATAAAATAATAGAAT
Found at i:37237739 original size:14 final size:14
Alignment explanation
Indices: 37237720--37237749 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37237710 TGGTTGTTTT
37237720 TAATCTAAATTAAC
1 TAATCTAAATTAAC
*
37237734 TAATCTAATTTAAC
1 TAATCTAAATTAAC
37237748 TA
1 TA
37237750 TGAACACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:37238573 original size:17 final size:17
Alignment explanation
Indices: 37238551--37238592 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
37238541 TAGGGTGCGA
*
37238551 GTGTGGCTCACACGGAT
1 GTGTGGCTCACACGGAC
37238568 GTGTGGCTCACACGGAC
1 GTGTGGCTCACACGGAC
37238585 GTGTGGCT
1 GTGTGGCT
37238593 AGCTCGTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.14, C:0.24, G:0.38, T:0.24
Consensus pattern (17 bp):
GTGTGGCTCACACGGAC
Found at i:37243141 original size:27 final size:27
Alignment explanation
Indices: 37243110--37243161 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
37243100 TGTATATAAA
*
37243110 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
37243137 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
37243162 GATTTCATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:37243255 original size:27 final size:27
Alignment explanation
Indices: 37243213--37243264 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
37243203 TGAAATGAAA
*
37243213 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
37243240 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
37243265 AATTCAGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:37250068 original size:27 final size:27
Alignment explanation
Indices: 37250037--37250088 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
37250027 TGTATATAAA
*
37250037 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
37250064 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
37250089 GATTTCATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:37254645 original size:14 final size:14
Alignment explanation
Indices: 37254628--37254655 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37254618 ACGATATTAG
37254628 TAAAAAAATATTTA
1 TAAAAAAATATTTA
37254642 TAAAAAAATATTTA
1 TAAAAAAATATTTA
37254656 ATATTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TAAAAAAATATTTA
Found at i:37268280 original size:3 final size:3
Alignment explanation
Indices: 37268272--37268321 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
37268262 ATTTTAAACC
37268272 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
37268320 TA
1 TA
37268322 GGTTCTCTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:37273422 original size:19 final size:21
Alignment explanation
Indices: 37273379--37273424 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
37273369 TATTACTTGT
*
37273379 TTATTATTACTATTATTGCATA
1 TTATTATTAATATTATTGCA-A
37273401 TTATTATTAATATTATT-C-A
1 TTATTATTAATATTATTGCAA
37273420 TTATT
1 TTATT
37273425 TTCATGTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 6 0.26
21 1 0.04
22 16 0.70
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (21 bp):
TTATTATTAATATTATTGCAA
Found at i:37276052 original size:77 final size:77
Alignment explanation
Indices: 37275926--37276082 Score: 305
Period size: 77 Copynumber: 2.0 Consensus size: 77
37275916 GGTGTAGTAA
*
37275926 TATATATATATAAACAAATGTGACACTTGTTATGGCCTCAACCCGCTTTTGGAGTCTAAAAAATT
1 TATATATATATAAACAAATGTGACACTTGTTATGGCCTCAACCCACTTTTGGAGTCTAAAAAATT
37275991 CTACTAGTGGTG
66 CTACTAGTGGTG
37276003 TATATATATATAAACAAATGTGACACTTGTTATGGCCTCAACCCACTTTTGGAGTCTAAAAAATT
1 TATATATATATAAACAAATGTGACACTTGTTATGGCCTCAACCCACTTTTGGAGTCTAAAAAATT
37276068 CTACTAGTGGTG
66 CTACTAGTGGTG
37276080 TAT
1 TAT
37276083 TAAATAGTTA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (77 bp):
TATATATATATAAACAAATGTGACACTTGTTATGGCCTCAACCCACTTTTGGAGTCTAAAAAATT
CTACTAGTGGTG
Found at i:37276407 original size:14 final size:15
Alignment explanation
Indices: 37276388--37276417 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37276378 AGTCATTGAT
37276388 TTAA-TTTTTTAAAA
1 TTAATTTTTTTAAAA
37276402 TTAATTTTTTTAAAA
1 TTAATTTTTTTAAAA
37276417 T
1 T
37276418 ACCAAAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTAATTTTTTTAAAA
Found at i:37276815 original size:26 final size:27
Alignment explanation
Indices: 37276766--37276816 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
37276756 CTTTTATTAG
* * *
37276766 AAAAAAATAAAATTAATTTTAAAAAGA
1 AAAAAAATAAAAGTAAGTTAAAAAAGA
37276793 AAAAAAAT-AAAGTAAGTTAAAAAA
1 AAAAAAATAAAAGTAAGTTAAAAAA
37276817 ATAAAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.22
Consensus pattern (27 bp):
AAAAAAATAAAAGTAAGTTAAAAAAGA
Found at i:37276822 original size:26 final size:27
Alignment explanation
Indices: 37276766--37276822 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 27
37276756 CTTTTATTAG
* * *
37276766 AAAAAAATAAAATTAATTTTAAAAAGA
1 AAAAAAATAAAAGTAATGTTAAAAAAA
37276793 AAAAAAAT-AAAGTAA-GTTAAAAAAA
1 AAAAAAATAAAAGTAATGTTAAAAAAA
*
37276818 TAAAA
1 AAAAA
37276823 TAATTTTTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 12 0.46
26 6 0.23
27 8 0.31
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (27 bp):
AAAAAAATAAAAGTAATGTTAAAAAAA
Found at i:37289097 original size:14 final size:14
Alignment explanation
Indices: 37289078--37289108 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
37289068 GAGACAAATA
37289078 TTAAGGTTCATAGC
1 TTAAGGTTCATAGC
37289092 TTAAGGTTCATAGC
1 TTAAGGTTCATAGC
37289106 TTA
1 TTA
37289109 CTGGATATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (14 bp):
TTAAGGTTCATAGC
Found at i:37292430 original size:24 final size:24
Alignment explanation
Indices: 37292403--37292454 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37292393 TTAGTAAGTC
*
37292403 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37292427 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37292451 AAAT
1 AAAT
37292455 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37294397 original size:24 final size:24
Alignment explanation
Indices: 37294370--37294421 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37294360 TTAGTAAGTC
*
37294370 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
37294394 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
37294418 AAAT
1 AAAT
37294422 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:37295046 original size:13 final size:13
Alignment explanation
Indices: 37295021--37295053 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
37295011 CTAAATGAAT
37295021 TCATTTCTCATTTC
1 TCATTT-TCATTTC
37295035 TCATTTTCATTTC
1 TCATTTTCATTTC
37295048 T-ATTTT
1 TCATTTT
37295054 GGAGAAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.26
13 8 0.42
14 6 0.32
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (13 bp):
TCATTTTCATTTC
Found at i:37295052 original size:6 final size:7
Alignment explanation
Indices: 37295021--37295052 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
37295011 CTAAATGAAT
37295021 TCATTTC
1 TCATTTC
37295028 TCATTTC
1 TCATTTC
37295035 TCATTT-
1 TCATTTC
37295041 TCATTTC
1 TCATTTC
37295048 T-ATTT
1 TCATTT
37295053 TGGAGAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 10 0.42
7 14 0.58
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (7 bp):
TCATTTC
Found at i:37295157 original size:57 final size:57
Alignment explanation
Indices: 37295028--37295155 Score: 167
Period size: 57 Copynumber: 2.2 Consensus size: 57
37295018 AATTCATTTC
37295028 TCATTTCT-CATTTTCATTTCTATTTTGGAGAAAACCACATCTATTTCCAAATGATT
1 TCATTTCTCCATTTTCATTTCTATTTTGGAGAAAACCACATCTATTTCCAAATGATT
*
37295084 TCATTCCTCCATTTTCATTT-TCATTTTGGAGAAAACCTTA-ATC-ATTTCCAAAT-ATT
1 TCATTTCTCCATTTTCATTTCT-ATTTTGGAGAAAACC--ACATCTATTTCCAAATGATT
37295140 TCCTATTTCTCCATTT
1 T-C-ATTTCTCCATTT
37295156 CACCATTTCT
Statistics
Matches: 64, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
56 12 0.19
57 37 0.58
58 14 0.22
59 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.05, T:0.46
Consensus pattern (57 bp):
TCATTTCTCCATTTTCATTTCTATTTTGGAGAAAACCACATCTATTTCCAAATGATT
Found at i:37303892 original size:69 final size:68
Alignment explanation
Indices: 37303763--37303892 Score: 152
Period size: 69 Copynumber: 1.9 Consensus size: 68
37303753 AATTATAGTG
* * * * * *
37303763 TTTCTTGTCGTTAGTTACCTGCATTGTTTTTGCATTTATGCTATCCAAAGTGGGATAAATTTAAT
1 TTTCTTGTCGTTAATTACCTGCATTATTGTCGCATTTATGCTATCCAAAGTAGGACAAATTTAAT
37303828 GTT
66 GTT
** * * *
37303831 TTTCTTGTCAGTTAATTGTCTGCATTATTGTCGCATTTCTGCTTTCCAAATTAGGACAAATT
1 TTTCTTGTC-GTTAATTACCTGCATTATTGTCGCATTTATGCTATCCAAAGTAGGACAAATT
37303893 AATTATACTT
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
68 9 0.18
69 41 0.82
ACGTcount: A:0.22, C:0.15, G:0.16, T:0.46
Consensus pattern (68 bp):
TTTCTTGTCGTTAATTACCTGCATTATTGTCGCATTTATGCTATCCAAAGTAGGACAAATTTAAT
GTT
Found at i:37308250 original size:19 final size:19
Alignment explanation
Indices: 37308228--37308266 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
37308218 ATATAACATG
* *
37308228 ATTCCACTATTTAGACACA
1 ATTCCACTAATCAGACACA
*
37308247 ATTCCATTAATCAGACACA
1 ATTCCACTAATCAGACACA
37308266 A
1 A
37308267 CCATTGAGGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.26, G:0.05, T:0.28
Consensus pattern (19 bp):
ATTCCACTAATCAGACACA
Found at i:37310133 original size:20 final size:21
Alignment explanation
Indices: 37310108--37310154 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
37310098 CAGGGATCAA
37310108 TTTGAAACAAAACA-GAAAAT
1 TTTGAAACAAAACATGAAAAT
*
37310128 TTTG-AAGAAAACATGAAAAT
1 TTTGAAACAAAACATGAAAAT
*
37310148 TTGGAAA
1 TTTGAAA
37310155 ATAAAGGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 8 0.35
20 13 0.57
21 2 0.09
ACGTcount: A:0.55, C:0.06, G:0.15, T:0.23
Consensus pattern (21 bp):
TTTGAAACAAAACATGAAAAT
Found at i:37310150 original size:19 final size:19
Alignment explanation
Indices: 37310106--37310150 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
37310096 ATCAGGGATC
37310106 AATTTGAAACAAAACAGAA
1 AATTTGAAACAAAACAGAA
*
37310125 AATTTTG-AAGAAAACATGAA
1 AA-TTTGAAACAAAACA-GAA
37310145 AATTTG
1 AATTTG
37310151 GAAAATAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.56, C:0.07, G:0.13, T:0.24
Consensus pattern (19 bp):
AATTTGAAACAAAACAGAA
Found at i:37318966 original size:19 final size:17
Alignment explanation
Indices: 37318942--37318976 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
37318932 GAAAAGAAAT
37318942 AAAATATCATATCATATTA
1 AAAATAT-ATAT-ATATTA
37318961 AAAATATATATATATT
1 AAAATATATATATATT
37318977 GACATAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 7 0.44
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (17 bp):
AAAATATATATATATTA
Found at i:37326916 original size:24 final size:24
Alignment explanation
Indices: 37326869--37326916 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
37326859 TCATTCTGTA
**
37326869 GCAAAGGATGAATTGAAGGTAAAT
1 GCAAAGGATGAATTGAAGAAAAAT
37326893 GCAAAGGATGAATTGACA-AAAAAT
1 GCAAAGGATGAATTGA-AGAAAAAT
37326917 TACCCAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.50, C:0.06, G:0.25, T:0.19
Consensus pattern (24 bp):
GCAAAGGATGAATTGAAGAAAAAT
Found at i:37326993 original size:21 final size:21
Alignment explanation
Indices: 37326967--37327015 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
37326957 CGTGTTTATT
*
37326967 TTCCGTTTAGCTCTTACGAGC
1 TTCCGTTTAGCTCTTACAAGC
*
37326988 TTCCGTTTAGCTCTTACAAGT
1 TTCCGTTTAGCTCTTACAAGC
37327009 TTCCGTT
1 TTCCGTT
37327016 CAACCCTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.14, C:0.27, G:0.16, T:0.43
Consensus pattern (21 bp):
TTCCGTTTAGCTCTTACAAGC
Found at i:37327042 original size:42 final size:42
Alignment explanation
Indices: 37326991--37327127 Score: 132
Period size: 42 Copynumber: 3.3 Consensus size: 42
37326981 TACGAGCTTC
* * *
37326991 CGTTTAGCTCTTACAAGTTTCCGTTCAACCCTTATGGGCTTT
1 CGTTAAGCTCTTACGAGTTTCCGTTCAACCCTTATGGGTTTT
* ** * * *
37327033 CGCTAAGCTCTTTTGAGCTTT-AGTTTAACCCTTATGAGTTTT
1 CGTTAAGCTCTTACGAG-TTTCCGTTCAACCCTTATGGGTTTT
* * * *
37327075 TGTTCAGCTCTTACGAGTTTCCGTTCAACTCTAATGGGTTTT
1 CGTTAAGCTCTTACGAGTTTCCGTTCAACCCTTATGGGTTTT
*
37327117 CGTTTAGCTCT
1 CGTTAAGCTCT
37327128 CATGAGCTTC
Statistics
Matches: 72, Mismatches: 21, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
41 3 0.04
42 66 0.92
43 3 0.04
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.43
Consensus pattern (42 bp):
CGTTAAGCTCTTACGAGTTTCCGTTCAACCCTTATGGGTTTT
Found at i:37327087 original size:21 final size:21
Alignment explanation
Indices: 37327063--37327148 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 21
37327053 TAGTTTAACC
**
37327063 CTTATGAGTTTTTGTTCAGCT
1 CTTATGAGTTTCCGTTCAGCT
* *
37327084 CTTACGAGTTTCCGTTCAACT
1 CTTATGAGTTTCCGTTCAGCT
* * * *
37327105 CTAATGGGTTTTCGTTTAGCT
1 CTTATGAGTTTCCGTTCAGCT
* * *
37327126 CTCATGAGCTTCTGTTCAG-T
1 CTTATGAGTTTCCGTTCAGCT
37327146 CTT
1 CTT
37327149 CAGGCTTTTG
Statistics
Matches: 48, Mismatches: 17, Indels: 1
0.73 0.26 0.02
Matches are distributed among these distances:
20 3 0.06
21 45 0.94
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.45
Consensus pattern (21 bp):
CTTATGAGTTTCCGTTCAGCT
Found at i:37333232 original size:20 final size:19
Alignment explanation
Indices: 37333185--37333238 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
37333175 TATGAAAAAT
*
37333185 AAAATAAAAATAGATTCAA
1 AAAATAAAAATAAATTCAA
* *
37333204 AAATGTAAAAATAAATTTAA
1 AAA-ATAAAAATAAATTCAA
37333224 GAAAAT-AAAATAAAT
1 -AAAATAAAAATAAAT
37333239 GGATAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 12 0.41
20 14 0.48
21 3 0.10
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.24
Consensus pattern (19 bp):
AAAATAAAAATAAATTCAA
Found at i:37339384 original size:12 final size:13
Alignment explanation
Indices: 37339357--37339381 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37339347 AAAAAATGCA
37339357 AAATTTTTATTTT
1 AAATTTTTATTTT
37339370 AAATTTTTATTT
1 AAATTTTTATTT
37339382 AAAAAACATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
AAATTTTTATTTT
Found at i:37339776 original size:24 final size:25
Alignment explanation
Indices: 37339749--37339795 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
37339739 ACCTTCTTAT
* *
37339749 TCCCTACGTTTTATTCT-TTTTGAG
1 TCCCTACATTTCATTCTATTTTGAG
37339773 TCCCTACATTTCATTCTATTTTG
1 TCCCTACATTTCATTCTATTTTG
37339796 GCGCCAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.15, C:0.23, G:0.09, T:0.53
Consensus pattern (25 bp):
TCCCTACATTTCATTCTATTTTGAG
Found at i:37346215 original size:14 final size:14
Alignment explanation
Indices: 37346188--37346285 Score: 54
Period size: 13 Copynumber: 7.5 Consensus size: 14
37346178 ATAATGATAA
37346188 TAAAATATTTAATAT
1 TAAAATA-TTAATAT
37346203 TAAAATATTAATAT
1 TAAAATATTAATAT
*
37346217 T-GAATATT--T-T
1 TAAAATATTAATAT
*
37346227 T--AATAAT-ATAT
1 TAAAATATTAATAT
37346238 TAAGAATATT-AT-T
1 TAA-AATATTAATAT
* *
37346251 TAAAATTATTATTTT
1 TAAAA-TATTAATAT
*
37346266 TAAAAT-TTATTAT
1 TAAAATATTAATAT
37346279 TAAAATA
1 TAAAATA
37346286 AATTGAAATA
Statistics
Matches: 69, Mismatches: 5, Indels: 19
0.74 0.05 0.20
Matches are distributed among these distances:
9 5 0.07
10 3 0.04
11 3 0.04
12 2 0.03
13 26 0.38
14 17 0.25
15 13 0.19
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
TAAAATATTAATAT
Found at i:37346245 original size:23 final size:22
Alignment explanation
Indices: 37346218--37346261 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
37346208 TATTAATATT
37346218 GAATATT-TTTAATAATATATTAA
1 GAATATTATTTAA-AAT-TATTAA
37346241 GAATATTATTTAAAATTATTA
1 GAATATTATTTAAAATTATTA
37346262 TTTTTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 10 0.50
24 5 0.25
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (22 bp):
GAATATTATTTAAAATTATTAA
Found at i:37346275 original size:16 final size:16
Alignment explanation
Indices: 37346244--37346280 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
37346234 ATATTAAGAA
37346244 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
37346260 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
37346276 TATTA
1 TATTA
37346281 AAATAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:37349041 original size:24 final size:24
Alignment explanation
Indices: 37349009--37349056 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
37348999 ATGAAGAATC
37349009 AATTGTATTTCAAAATTGAGCAGT
1 AATTGTATTTCAAAATTGAGCAGT
37349033 AATTGTATTTCAAAATTGAGCAGT
1 AATTGTATTTCAAAATTGAGCAGT
37349057 TCTTACTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (24 bp):
AATTGTATTTCAAAATTGAGCAGT
Found at i:37349591 original size:3 final size:3
Alignment explanation
Indices: 37349578--37349614 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
37349568 ATGGAGAAAG
37349578 TGA TG- TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
37349615 GTGAATCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.30, C:0.00, G:0.35, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:37350013 original size:31 final size:26
Alignment explanation
Indices: 37349977--37350044 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 26
37349967 ATATTTAAAT
*
37349977 ATTTAAAATATAGTTTATATATTCTAATTAA
1 ATTTAAAATATA-ATTA-ATA-T-TAATT-A
37350008 ATTTAATAA-ATAATTAATATTAATTA
1 ATTTAA-AATATAATTAATATTAATTA
37350034 ATTTAAAATAT
1 ATTTAAAATAT
37350045 TTTAAAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
25 2 0.06
26 9 0.26
27 5 0.15
28 1 0.03
29 3 0.09
30 3 0.09
31 9 0.26
32 2 0.06
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (26 bp):
ATTTAAAATATAATTAATATTAATTA
Found at i:37353003 original size:24 final size:24
Alignment explanation
Indices: 37352976--37353038 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
37352966 TTATTAACAT
*
37352976 TGTTCGTGAACATGTTCAATTATA
1 TGTTCATGAACATGTTCAATTATA
*
37353000 TGTTCATGAACATGTTCGATTA-A
1 TGTTCATGAACATGTTCAATTATA
*
37353023 -GTTAAATGAACATGTT
1 TGTT-CATGAACATGTT
37353039 TGTGAATATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
22 3 0.09
23 12 0.34
24 20 0.57
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (24 bp):
TGTTCATGAACATGTTCAATTATA
Found at i:37356110 original size:16 final size:16
Alignment explanation
Indices: 37356089--37356119 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37356079 AATTAATTTA
*
37356089 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
37356105 AATTAAATAATTTTC
1 AATTAAATAATTTTC
37356120 TCAACCCAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:37358068 original size:15 final size:15
Alignment explanation
Indices: 37358050--37358080 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37358040 ATAGATACAA
*
37358050 TTTTTATTTTTATTT
1 TTTTTAATTTTATTT
37358065 TTTTTAATTTTATTT
1 TTTTTAATTTTATTT
37358080 T
1 T
37358081 AGTTTACTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTAATTTTATTT
Found at i:37364255 original size:28 final size:28
Alignment explanation
Indices: 37364197--37364289 Score: 82
Period size: 28 Copynumber: 3.3 Consensus size: 28
37364187 TTAGATGGCA
** * *
37364197 CCACAAAGGCATTCATT-TTTAGAAATAG
1 CCACAAAGGC-TTCATTAACTAGAGATTG
* *
37364225 CCATAAAGGCTTTC-TTATCTAGAGATTG
1 CCACAAAGGC-TTCATTAACTAGAGATTG
* *
37364253 CCACAAATGCTTCATTAACTAGAGATTA
1 CCACAAAGGCTTCATTAACTAGAGATTG
37364281 CCACAAAGG
1 CCACAAAGG
37364290 TGTCCTTTTC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
27 5 0.09
28 48 0.91
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (28 bp):
CCACAAAGGCTTCATTAACTAGAGATTG
Found at i:37364591 original size:26 final size:26
Alignment explanation
Indices: 37364555--37364612 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
37364545 ATAATTGGGA
*
37364555 TTTGCCTAGACTCACATTTCATGAGG
1 TTTGCCTAGACTCACATTTCATAAGG
37364581 TTTGCCTAGACTCACATTTCATAAGG
1 TTTGCCTAGACTCACATTTCATAAGG
37364607 TTTGCC
1 TTTGCC
37364613 CTTCATTGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (26 bp):
TTTGCCTAGACTCACATTTCATAAGG
Found at i:37372980 original size:210 final size:210
Alignment explanation
Indices: 37372609--37372988 Score: 544
Period size: 210 Copynumber: 1.8 Consensus size: 210
37372599 CTTTTTTTCT
* * * *
37372609 CTTAGGATATCCCACAAACATGCACAATTCTATTCGTGAATTCAACTTCCTCGCATATTTATCCA
1 CTTAGGATATCCCACAAACATGCACAATTCTATCCGTAAATCCAACTTCCTCACATATTTATCCA
* * * ** * * * *
37372674 ATATGTGGGTTGGTTATCTACCATAGCTGATCATGATATTTGTATCCCTTTTCGCATAATTTTAT
66 ATACGTGAGTTGGTCATCTACCATAGCCAATCATGATATCTGTATCCCTTTTCACATAAATTTAG
* *
37372739 CTTGTTTAATAGTAAAATCAAGTCCTTTTAATAATAATTTCTGTTTCTAAATTTTAACTACTCAA
131 CTTGTTTAATAGTAAAATAAAGTCATTTTAATAATAATTTCTGTTTCTAAATTTTAACTACTCAA
37372804 AACGTACTTTGTTCC
196 AACGTACTTTGTTCC
* * *
37372819 CTTAGGATATCCCACAAACATGCACAATTTTATCCGTAAATCCAACTTCCTCACATCTTTCTCCA
1 CTTAGGATATCCCACAAACATGCACAATTCTATCCGTAAATCCAACTTCCTCACATATTTATCCA
* * *
37372884 ATACGTGAGTTGGTCATCTGCCATAGCCAATCATGTTATCTGTATCCCTTTTCATATAAATTTAG
66 ATACGTGAGTTGGTCATCTACCATAGCCAATCATGATATCTGTATCCCTTTTCACATAAATTTAG
* * *
37372949 CTTGTTTAATATTAAAATAAAGTTATTTTAATGATAATTT
131 CTTGTTTAATAGTAAAATAAAGTCATTTTAATAATAATTT
37372989 ATGTATTTAC
Statistics
Matches: 146, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
210 146 1.00
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (210 bp):
CTTAGGATATCCCACAAACATGCACAATTCTATCCGTAAATCCAACTTCCTCACATATTTATCCA
ATACGTGAGTTGGTCATCTACCATAGCCAATCATGATATCTGTATCCCTTTTCACATAAATTTAG
CTTGTTTAATAGTAAAATAAAGTCATTTTAATAATAATTTCTGTTTCTAAATTTTAACTACTCAA
AACGTACTTTGTTCC
Found at i:37373243 original size:20 final size:20
Alignment explanation
Indices: 37373218--37373318 Score: 69
Period size: 21 Copynumber: 5.0 Consensus size: 20
37373208 CAATATTAGA
37373218 ATTGAATGTCGCGACATTGG
1 ATTGAATGTCGCGACATTGG
* * *
37373238 ATTGAATGTTGC-AAATTAGA
1 ATTGAATGTCGCGACATT-GG
*
37373258 ATTGAATGTAGCGACATTGGG
1 ATTGAATGTCGCGACATT-GG
** * * *
37373279 GCTAAATGTTGCAACATTGG
1 ATTGAATGTCGCGACATTGG
**
37373299 ATTTTTATGTCGCGACATTG
1 A-TTGAATGTCGCGACATTG
37373319 ACTTTGTGCA
Statistics
Matches: 60, Mismatches: 18, Indels: 5
0.72 0.22 0.06
Matches are distributed among these distances:
19 4 0.07
20 25 0.42
21 31 0.52
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (20 bp):
ATTGAATGTCGCGACATTGG
Found at i:37374203 original size:40 final size:41
Alignment explanation
Indices: 37374144--37374223 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 41
37374134 TAATTTTAAT
* *
37374144 TTAGAATTGAATGTCGCGACATT-GGATTGAATGTTGCAAA
1 TTAGAATTGAATGTAGCGACATTGGGACTGAATGTTGCAAA
*
37374184 TTAGAATTGAATGTAGCGACATTGGGGCTGAATGTTGCAA
1 TTAGAATTGAATGTAGCGACATTGGGACTGAATGTTGCAA
37374224 CATTGGATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
40 22 0.61
41 14 0.39
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (41 bp):
TTAGAATTGAATGTAGCGACATTGGGACTGAATGTTGCAAA
Found at i:37375015 original size:932 final size:931
Alignment explanation
Indices: 37373213--37375078 Score: 3516
Period size: 932 Copynumber: 2.0 Consensus size: 931
37373203 TGCCGCAATA
37373213 TTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTGG
1 TTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTGG
*
37373278 GGCTAAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTGCAATGATGATTTCCTT
66 GGCTAAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTGCAACGATGATTTCCTT
*
37373343 CATGCATCGATTCTAATTTTAAGGGCAATTAGAGGTCTTTTTCCAACTTAAAACCTTAATTGAAA
131 CATGCATCGATTCTAATTTTAAGGGCAATTAGAGGTCATTTTCCAACTTAAAACCTTAATTGAAA
*
37373408 TTATAAATGAAGGGGCAATTTATTCTTTTGACTTTTATCTATATAAACAACATTATAATCAAATT
196 TTATAAATGAAGGGGCAATTTATCCTTTTGACTTTTATCTATATAAACAACATTATAATCAAATT
*
37373473 TGAGGGGACTTTTACACAAATTGCACTTAATCTTTCAGAAAATTAGGTTTTTACTTAAATGTTCT
261 TGAGGGGACTTTTACACAAATTACACTTAATCTTTCAGAAAATTAGGTTTTTACTTAAATGTTCT
37373538 CTTAATAGGAGATTCTATTTAGAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCAT
326 CTTAATAGGAGATTCTATTTAGAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCAT
* *
37373603 TCGCGTTACTTATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATGTCTCCTCATTAATGTA
391 TCGCGTTACTAATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGTA
* * *
37373668 ATTAACTGAATGTTTGTATGAATAAGAGAATAAAACCTATGTTTTCAGAAATATCTTGCGTGATT
456 ATTAACTAAATGTTTGTATGAATAAGAGAATAAAAACTATGCTTTCAGAAATATCTTGCGTGATT
*
37373733 GTTTGAGTAACTAATTATTTCATTCAGTGCTTGTTTATCTAAAATTGGGTATTTATTTGAGTTTG
521 GTTTGAGTAACTAATTATTTCATTCAGTGCTTGTTTATCTAAAATTGGGGATTTATTTGAGTTTG
37373798 CTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAAG
586 CTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAAG
37373863 GGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCATA
651 GGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCATA
*
37373928 TGCTTAGTGGAGACCAAAAGGGTATCTTAGGTAGTAACTCTTAGAGAGGATGACACCGAGAGGGC
716 TGCTTAGTGGAGACCAAAAGGGTATCTTAGATAGTAACTCTTAGAGAGGATGACACCGAGAGGGC
37373993 ATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCAA
781 ATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCAA
37374058 TTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCTT
846 TTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCTT
37374123 AACCTTCAGTTTAATTTTAAT
911 AACCTTCAGTTTAATTTTAAT
37374144 TTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTGG
1 TTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTGG
*
37374209 GGCTGAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTGCAACGATGATTTCCTT
66 GGCTAAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTGCAACGATGATTTCCTT
*
37374274 CATGCATCGATTCTGATTTTAAGGGCAATTAGAGGTCATTTTCCAACTTAAAACCTTAATTGAAA
131 CATGCATCGATTCTAATTTTAAGGGCAATTAGAGGTCATTTTCCAACTTAAAACCTTAATTGAAA
37374339 TTATAAATGAAGGGGCAATTTATCCTTTTGACTTTTATCTATATAAACAACATTATAATCAAATT
196 TTATAAATGAAGGGGCAATTTATCCTTTTGACTTTTATCTATATAAACAACATTATAATCAAATT
* *
37374404 TGAGGGGACTTTTACACAAATTACACTTAATCTTTCAGAAAATTAGGTTTTTACTTAGATGTTTT
261 TGAGGGGACTTTTACACAAATTACACTTAATCTTTCAGAAAATTAGGTTTTTACTTAAATGTTCT
* *
37374469 CTTAATAGGAGATTCTATTTAGAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGATGTGTGCAT
326 CTTAATAGGAGATTCTATTTAGAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCAT
*
37374534 TCGTCGTTACTAATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTTATTAATGT
391 TCG-CGTTACTAATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGT
* *
37374599 AATTAACTAAATGTTTGTATGAATAGGAGAATAAAAACTATGCTTTCATAAATATCTTGCGTGAT
455 AATTAACTAAATGTTTGTATGAATAAGAGAATAAAAACTATGCTTTCAGAAATATCTTGCGTGAT
*
37374664 TGTTTGAGTAACTAATTTTTTCATTCAGTGCTTGTTTATCTAAAATTGGGGATTTATTTGAGTTT
520 TGTTTGAGTAACTAATTATTTCATTCAGTGCTTGTTTATCTAAAATTGGGGATTTATTTGAGTTT
37374729 GCTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAA
585 GCTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAA
*
37374794 GGGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCTT
650 GGGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCAT
*
37374859 ATGCTTAGTGGAGACCAAAAGGGTATCTTAGATAGTAATTCTTAGAGAGGATGACACCGAGAGGG
715 ATGCTTAGTGGAGACCAAAAGGGTATCTTAGATAGTAACTCTTAGAGAGGATGACACCGAGAGGG
37374924 CATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCA
780 CATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCA
37374989 ATTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCT
845 ATTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCT
37375054 TAACCTTCAGTTTAATTTTAAT
910 TAACCTTCAGTTTAATTTTAAT
37375076 TTA
1 TTA
37375079 ATTAGTTTTA
Statistics
Matches: 911, Mismatches: 23, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
931 383 0.42
932 528 0.58
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.36
Consensus pattern (931 bp):
TTAGAATTGAATGTCGCGACATTGGATTGAATGTTGCAAATTAGAATTGAATGTAGCGACATTGG
GGCTAAATGTTGCAACATTGGATTTTTATGTCGCGACATTGACTTTGTGCAACGATGATTTCCTT
CATGCATCGATTCTAATTTTAAGGGCAATTAGAGGTCATTTTCCAACTTAAAACCTTAATTGAAA
TTATAAATGAAGGGGCAATTTATCCTTTTGACTTTTATCTATATAAACAACATTATAATCAAATT
TGAGGGGACTTTTACACAAATTACACTTAATCTTTCAGAAAATTAGGTTTTTACTTAAATGTTCT
CTTAATAGGAGATTCTATTTAGAAGTTTATTCATTGCGAGTGGAGAATGTTCTAGACGCGTGCAT
TCGCGTTACTAATCAATGAGCATTCTATTCTTTATTCTCTTTATTTATATCTCCTCATTAATGTA
ATTAACTAAATGTTTGTATGAATAAGAGAATAAAAACTATGCTTTCAGAAATATCTTGCGTGATT
GTTTGAGTAACTAATTATTTCATTCAGTGCTTGTTTATCTAAAATTGGGGATTTATTTGAGTTTG
CTAAAGTTCTCAATATACTAGGATAGACAACCCTAGTAGAATATCTAGATAGATGAGACCGAAAG
GGTACTCTATTATGTAAGCCTTTAGTAAGCTTGTGCTGAGCGGTGAGACCGAAAGAGTATGCATA
TGCTTAGTGGAGACCAAAAGGGTATCTTAGATAGTAACTCTTAGAGAGGATGACACCGAGAGGGC
ATTCTTAGTTACGGGTGGTAAATAATTCAATTGAAGTAAATATTGGTTTCATTGATAATTAGCAA
TTCAACCAACTTTAGGCTAAGTAGCTCACTCGTTTAAACAAGGAATAGGAAGTTTCAATAGTCTT
AACCTTCAGTTTAATTTTAAT
Found at i:37375100 original size:21 final size:20
Alignment explanation
Indices: 37375062--37375102 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
37375052 CTTAACCTTC
*
37375062 AGTTTAATTTTAATTTAATT
1 AGTTTAATTTCAATTTAATT
*
37375082 AGTTTTATTTCAATCTTAATT
1 AGTTTAATTTCAAT-TTAATT
37375103 TGGAATTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
AGTTTAATTTCAATTTAATT
Found at i:37376874 original size:37 final size:37
Alignment explanation
Indices: 37376832--37376904 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
37376822 GTCATACATA
37376832 GTATGAATAAGTCCAATTCCAACATTGTCATATTATG
1 GTATGAATAAGTCCAATTCCAACATTGTCATATTATG
37376869 GTATGAATAAGTCCAATTCCAACATTGTCATATTAT
1 GTATGAATAAGTCCAATTCCAACATTGTCATATTAT
37376905 CACAGTGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (37 bp):
GTATGAATAAGTCCAATTCCAACATTGTCATATTATG
Found at i:37390382 original size:12 final size:10
Alignment explanation
Indices: 37390353--37390392 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
37390343 ATTGACATGT
37390353 TTAATTTTAA
1 TTAATTTTAA
37390363 TTAATTTTATA
1 TTAATTTTA-A
*
37390374 TTAAATTTTGA
1 TT-AATTTTAA
37390385 TTAATTTT
1 TTAATTTT
37390393 GATCCTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
10 15 0.56
11 6 0.22
12 6 0.22
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (10 bp):
TTAATTTTAA
Found at i:37394575 original size:28 final size:30
Alignment explanation
Indices: 37394534--37394590 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 30
37394524 GAATTATTTG
37394534 TAAAATTTAGTTGT-TCTTTTTGTAAATAC
1 TAAAATTTAGTTGTCTCTTTTTGTAAATAC
37394563 TAAAA-TTAGTTGTCTCTTTTTGTAAATA
1 TAAAATTTAGTTGTCTCTTTTTGTAAATA
37394591 TTTTTTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 8 0.30
29 19 0.70
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.51
Consensus pattern (30 bp):
TAAAATTTAGTTGTCTCTTTTTGTAAATAC
Found at i:37406190 original size:18 final size:19
Alignment explanation
Indices: 37406169--37406212 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
37406159 TAAAATCATT
37406169 AAAAATTAT-AAACTATAG
1 AAAAATTATAAAACTATAG
* *
37406187 -AAAATCATAAAACTATAT
1 AAAAATTATAAAACTATAG
37406205 AAAAATTA
1 AAAAATTA
37406213 AAATTTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 7 0.33
18 8 0.38
19 6 0.29
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAATTATAAAACTATAG
Found at i:37406214 original size:17 final size:17
Alignment explanation
Indices: 37406168--37406215 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 17
37406158 TTAAAATCAT
37406168 TAAAAATTATAAACTATA
1 TAAAAATTA-AAACTATA
*
37406186 -GAAAATCATAAAACTATA
1 TAAAAAT--TAAAACTATA
37406204 TAAAAATTAAAA
1 TAAAAATTAAAA
37406216 TTTTTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
17 10 0.40
18 8 0.32
19 7 0.28
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (17 bp):
TAAAAATTAAAACTATA
Found at i:37406336 original size:20 final size:20
Alignment explanation
Indices: 37406284--37406341 Score: 66
Period size: 22 Copynumber: 2.9 Consensus size: 20
37406274 ATTATAACTG
*
37406284 AAAAAATA-TATAAATTGTA
1 AAAAAATATTAAAAATTGTA
37406303 AAAAAATAATTTAAAAATTG-A
1 AAAAAAT-A-TTAAAAATTGTA
37406324 AAGAAAATATTAAAAATT
1 AA-AAAATATTAAAAATT
37406342 TTATATTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 7 0.21
20 10 0.29
21 4 0.12
22 13 0.38
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (20 bp):
AAAAAATATTAAAAATTGTA
Found at i:37406387 original size:18 final size:18
Alignment explanation
Indices: 37406366--37406424 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
37406356 TATAAATTAC
*
37406366 AAAAGATATAAAAATTTT
1 AAAATATATAAAAATTTT
*
37406384 AAAATTTATTAAAAATTTT
1 AAAATATA-TAAAAATTTT
* * *
37406403 TAAATATAGAAAAATATT
1 AAAATATATAAAAATTTT
37406421 AAAA
1 AAAA
37406425 ATTGATAGAG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
18 17 0.52
19 16 0.48
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
AAAATATATAAAAATTTT
Found at i:37406973 original size:9 final size:10
Alignment explanation
Indices: 37406937--37406986 Score: 50
Period size: 10 Copynumber: 4.9 Consensus size: 10
37406927 ATTTATTATG
37406937 TTAATAATTTT
1 TTAAT-ATTTT
37406948 TTAATATTTT
1 TTAATATTTT
37406958 CTGTAAT-TTTT
1 -T-TAATATTTT
*
37406969 TTAATAATTT
1 TTAATATTTT
37406979 TTAA-ATTT
1 TTAATATTT
37406987 ATTATCATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
9 7 0.21
10 13 0.38
11 10 0.29
12 4 0.12
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (10 bp):
TTAATATTTT
Found at i:37410199 original size:20 final size:20
Alignment explanation
Indices: 37410176--37410227 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
37410166 TGTATGATAT
*
37410176 CAAAATTTTTAATGC-GGTAC
1 CAAAATTTTTAAT-CAAGTAC
**
37410196 C-AAATTCCTAATCAAGTAC
1 CAAAATTTTTAATCAAGTAC
37410215 CAAAATTTTTAAT
1 CAAAATTTTTAAT
37410228 AAAATTTCTC
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
18 1 0.04
19 14 0.56
20 10 0.40
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (20 bp):
CAAAATTTTTAATCAAGTAC
Found at i:37410686 original size:19 final size:19
Alignment explanation
Indices: 37410645--37410708 Score: 62
Period size: 19 Copynumber: 3.3 Consensus size: 19
37410635 TTTAGTCATA
*
37410645 TAATA-AATTATTAATATAAT
1 TAATATAATTATT--TATATT
37410665 TAATATAATT-TATTATATT
1 TAATATAATTAT-TTATATT
37410684 TAATA-AATTATTTAATATT
1 TAATATAATTATTT-ATATT
37410703 TAATAT
1 TAATAT
37410709 TTAAATTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
18 6 0.16
19 21 0.55
20 6 0.16
21 5 0.13
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATAATTATTTATATT
Found at i:37412014 original size:12 final size:12
Alignment explanation
Indices: 37411985--37412017 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
37411975 AATACTAATA
*
37411985 AATTAATAAAAT
1 AATTATTAAAAT
37411997 -ATTATTAAAAT
1 AATTATTAAAAT
37412008 AATTATTAAA
1 AATTATTAAA
37412018 TTGAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AATTATTAAAAT
Found at i:37433915 original size:34 final size:33
Alignment explanation
Indices: 37433869--37433933 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 33
37433859 GGTACCATAT
37433869 TTTTCCCCCAATTGCACCTCACTGGCATTAATA
1 TTTTCCCCCAATTGCACCTCACTGGCATTAATA
*
37433902 TTTTCCTCTCAATTGCACCTCACTGGCATTAA
1 TTTTCC-CCCAATTGCACCTCACTGGCATTAA
37433934 AAGCCAAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 6 0.20
34 24 0.80
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.35
Consensus pattern (33 bp):
TTTTCCCCCAATTGCACCTCACTGGCATTAATA
Found at i:37440745 original size:50 final size:50
Alignment explanation
Indices: 37440690--37441075 Score: 399
Period size: 50 Copynumber: 7.8 Consensus size: 50
37440680 TTGAAATTAA
* **
37440690 GAGAGGTCCCATGTAAGACCGTGTCTGGGACATGGTGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
37440740 GAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACC---AT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** * * * *
37440787 GATGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGAACCGATAT
1 GA-GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * * * *
37440838 GAAAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGTA--GTACAA
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGAT
* ** * *
37440887 GAAACATCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* *
37440937 GAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** * *
37440987 --GAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** * * *
37441035 GAGAACTCCCATGTAAGACCATATCTGGGATATGACATTGG
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
37441076 TAGTATAGGA
Statistics
Matches: 277, Mismatches: 50, Indels: 18
0.80 0.14 0.05
Matches are distributed among these distances:
47 4 0.01
48 80 0.29
49 38 0.14
50 150 0.54
51 5 0.02
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:37440817 original size:98 final size:97
Alignment explanation
Indices: 37440692--37441075 Score: 437
Period size: 98 Copynumber: 3.9 Consensus size: 97
37440682 GAAATTAAGA
* * ** * **
37440692 GAGGTCCCATGTAAGACCGTGTCTGGGACATGGTGTTGGCACCGAGATGAGAGGTCCCATGTAAG
1 GAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAG
* * *
37440757 ACCATGTCTGAGACATGGCATTGGCACCATGAT
66 ACCATATCTGGGATATGGCATTGGCACCA-GAT
* * * * *
37440790 GAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGAACCGATATGAAAACTCCCATGTAAG
1 GAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAG
* *
37440855 ACCATATCTGGGATATGGCATTGGTAGTACAAGA-
66 ACCATATCTGGGATATGGCATT-G--GCACCAGAT
* ** * * * * **
37440889 AACATCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAG
1 GAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAG
* *
37440954 ACCATGTCTGGGATATGGCGTTGGCACCGAGAT
66 ACCATATCTGGGATATGGCATTGGCACC-AGAT
* *
37440987 GAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAG
1 GAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAG
*
37441052 ACCATATCTGGGATATGACATTGG
66 ACCATATCTGGGATATGGCATTGG
37441076 TAGTATAGGA
Statistics
Matches: 232, Mismatches: 49, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
96 3 0.01
97 3 0.01
98 148 0.64
99 72 0.31
100 2 0.01
101 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (97 bp):
GAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAG
ACCATATCTGGGATATGGCATTGGCACCAGAT
Found at i:37440914 original size:197 final size:197
Alignment explanation
Indices: 37440696--37441116 Score: 718
Period size: 197 Copynumber: 2.1 Consensus size: 197
37440686 TTAAGAGAGG
** *
37440696 TCCCATGTAAGACCGTGTCTGGGACATGGTGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCA
1 TCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCA
*
37440761 TGTCTGAGACATGGCATTGGCACC-ATGATGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCA
66 TGTCTGAGACATGGCATTGGCACCGA-GATGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCA
*
37440825 TGGGAACCGATATGAAAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGTAGTACAAGAA
130 TGGGAACCGATATGAAAACTCCCATGTAAGACCATATCTGGGATATGACATTGGTAGTACAAGAA
37440890 ACA
195 ACA
37440893 TCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCA
1 TCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCA
* * *
37440958 TGTCTGGGATATGGCGTTGGCACCGAGATGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCAT
66 TGTCTGAGACATGGCATTGGCACCGAGATGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCAT
* * * *
37441023 GGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGGGATATGACATTGGTAGTATAGGAAA
131 GGGAACCGATATGAAAACTCCCATGTAAGACCATATCTGGGATATGACATTGGTAGTACAAGAAA
37441088 CA
196 CA
37441090 TCCCATGTAAGACTATGTCTGGGACAT
1 TCCCATGTAAGACTATGTCTGGGACAT
37441117 ATCTTTGGCA
Statistics
Matches: 211, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
197 210 1.00
198 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (197 bp):
TCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCA
TGTCTGAGACATGGCATTGGCACCGAGATGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCAT
GGGAACCGATATGAAAACTCCCATGTAAGACCATATCTGGGATATGACATTGGTAGTACAAGAAA
CA
Found at i:37441001 original size:147 final size:146
Alignment explanation
Indices: 37440746--37441022 Score: 351
Period size: 147 Copynumber: 1.9 Consensus size: 146
37440736 AGATGAGAGG
*
37440746 TCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCATGATGAGGTCCCCCGTAAGACCATG
1 TCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCATGATGAGGTCCCACGTAAGACCATG
* * * *
37440811 TTTGGGACATGGCATGGGAACCGATATGAAAACTCCCATGTAAGACCATATCTGGGATATGGCAT
66 TCTGGGACATGGCATGGGAACCGAGATG-AAACTCCCACGTAAGACCATATCTGGGACATGGCAT
37440876 TGGTAGTACAAGAAACA
130 TGGTAGTACAAGAAACA
* * * *
37440893 TCCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGA-GATGAGAGGTCCCATGTAAGACC
1 TCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACC-ATGAT--GAGGTCCCACGTAAGACC
* * * * ** * *
37440957 ATGTCTGGGATATGGCGTTGGCACCGAGATG-AGGTCCCCCGTAAGACCATGTCTGGGACATGGC
63 ATGTCTGGGACATGGCATGGGAACCGAGATGAAACTCCCACGTAAGACCATATCTGGGACATGGC
37441021 AT
128 AT
37441023 GGGCACCGAT
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
147 68 0.62
148 1 0.01
149 41 0.37
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.22
Consensus pattern (146 bp):
TCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCATGATGAGGTCCCACGTAAGACCATG
TCTGGGACATGGCATGGGAACCGAGATGAAACTCCCACGTAAGACCATATCTGGGACATGGCATT
GGTAGTACAAGAAACA
Found at i:37443611 original size:28 final size:28
Alignment explanation
Indices: 37443571--37443628 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
37443561 CGGCACCATA
*
37443571 CTTAGTTAAATTCATTGGTTTGTTTTAG
1 CTTAGTTAAATTCATTAGTTTGTTTTAG
37443599 CTTAGTTAAATTCATTAGTTTGTTTTAG
1 CTTAGTTAAATTCATTAGTTTGTTTTAG
37443627 CT
1 CT
37443629 GGCAATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.53
Consensus pattern (28 bp):
CTTAGTTAAATTCATTAGTTTGTTTTAG
Found at i:37446702 original size:3 final size:3
Alignment explanation
Indices: 37446694--37446731 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
37446684 CTCTATGAGA
37446694 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
37446732 GAGATCCTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:37448439 original size:22 final size:19
Alignment explanation
Indices: 37448400--37448441 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
37448390 TGCAAAGTTG
37448400 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
37448419 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
37448441 A
1 A
37448442 ATTATTATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:37460488 original size:9 final size:9
Alignment explanation
Indices: 37460471--37460501 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
37460461 TAGAAACACC
37460471 AAAAA-AAA
1 AAAAACAAA
37460479 AAAAACAAA
1 AAAAACAAA
37460488 AAAAACAAA
1 AAAAACAAA
37460497 AAAAA
1 AAAAA
37460502 TATTTTGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAACAAA
Found at i:37464225 original size:27 final size:29
Alignment explanation
Indices: 37464194--37464270 Score: 97
Period size: 27 Copynumber: 2.7 Consensus size: 29
37464184 TTAATTATTT
37464194 ACATATATTTGCATGAACTTGAT-T-GTC
1 ACATATATTTGCATGAACTTGATATGGTC
* *
37464221 ACATATATTTACATGAA-TACGATATGGTC
1 ACATATATTTGCATGAACT-TGATATGGTC
*
37464250 CCATATATTTGCATGAACTTG
1 ACATATATTTGCATGAACTTG
37464271 TAACATATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
26 1 0.02
27 19 0.46
28 1 0.02
29 19 0.46
30 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (29 bp):
ACATATATTTGCATGAACTTGATATGGTC
Found at i:37468329 original size:3 final size:3
Alignment explanation
Indices: 37468321--37468369 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
37468311 ATGAATTAAA
* * *
37468321 TAT TAT TA- TAT TAT TAT TAT AAT GTAT TGT TAT TAT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
37468366 TAT T
1 TAT T
37468370 GACTAATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.89
4 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:37469256 original size:36 final size:39
Alignment explanation
Indices: 37469169--37469260 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 39
37469159 GAATATATGT
37469169 GTGGAATTGAATTGAATATATTGACTTGAAAAATGAAAAA
1 GTGGAATTGAATTG-ATATATTGACTTGAAAAATGAAAAA
*
37469209 GT-GAATTTTGAATTGAT-T-TGTGA-TTG-AAAGTGAAAAA
1 GTGGAA--TTGAATTGATATAT-TGACTTGAAAAATGAAAAA
37469246 GTGGAATTGAATTGA
1 GTGGAATTGAATTGA
37469261 AATGTGAATT
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
36 9 0.19
37 12 0.26
38 7 0.15
39 7 0.15
40 4 0.09
41 8 0.17
ACGTcount: A:0.41, C:0.01, G:0.24, T:0.34
Consensus pattern (39 bp):
GTGGAATTGAATTGATATATTGACTTGAAAAATGAAAAA
Done.