Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 133 of 189
Found at i:38418614 original size:7 final size:7
Alignment explanation
Indices: 38418604--38418635 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
38418594 CTCCTTTCTC
38418604 CTTTCAA
1 CTTTCAA
38418611 CTTTCAA
1 CTTTCAA
38418618 CTTTCAA
1 CTTTCAA
*
38418625 CTTTCAC
1 CTTTCAA
38418632 CTTT
1 CTTT
38418636 TTCCTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (7 bp):
CTTTCAA
Found at i:38418614 original size:14 final size:14
Alignment explanation
Indices: 38418597--38418635 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
38418587 AAGTTTTCTC
*
38418597 CTTTCTCCTTTCAA
1 CTTTCACCTTTCAA
*
38418611 CTTTCAACTTTCAA
1 CTTTCACCTTTCAA
38418625 CTTTCACCTTT
1 CTTTCACCTTT
38418636 TTCCTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.18, C:0.33, G:0.00, T:0.49
Consensus pattern (14 bp):
CTTTCACCTTTCAA
Found at i:38421462 original size:16 final size:16
Alignment explanation
Indices: 38421441--38421491 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
38421431 GAAACCTATG
38421441 CAAACAAGTGAATTAT
1 CAAACAAGTGAATTAT
38421457 CAAACAA--GAA--AT
1 CAAACAAGTGAATTAT
38421469 -AAGA-AAGTGAATTAT
1 CAA-ACAAGTGAATTAT
38421484 CAAACAAG
1 CAAACAAG
38421492 ATAAGAAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 14
0.67 0.00 0.33
Matches are distributed among these distances:
11 4 0.14
12 3 0.11
13 3 0.11
14 3 0.11
15 3 0.11
16 12 0.43
ACGTcount: A:0.57, C:0.12, G:0.14, T:0.18
Consensus pattern (16 bp):
CAAACAAGTGAATTAT
Found at i:38421884 original size:23 final size:23
Alignment explanation
Indices: 38421850--38421897 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
38421840 GTTTGAATTA
38421850 TTTTGAGTTCGAGGCATTGAGGG
1 TTTTGAGTTCGAGGCATTGAGGG
*
38421873 TTTTAGAG-TCGAGTCATTGAGGG
1 TTTT-GAGTTCGAGGCATTGAGGG
38421896 TT
1 TT
38421898 ATAGTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.19, C:0.08, G:0.35, T:0.38
Consensus pattern (23 bp):
TTTTGAGTTCGAGGCATTGAGGG
Found at i:38426689 original size:15 final size:15
Alignment explanation
Indices: 38426669--38426702 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
38426659 CCAACAAAGA
38426669 AGATACTTGGTATGG
1 AGATACTTGGTATGG
38426684 AGATACTTGGTATGG
1 AGATACTTGGTATGG
38426699 AGAT
1 AGAT
38426703 TCTTAGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.06, G:0.32, T:0.32
Consensus pattern (15 bp):
AGATACTTGGTATGG
Found at i:38430910 original size:6 final size:6
Alignment explanation
Indices: 38430899--38431103 Score: 383
Period size: 6 Copynumber: 34.2 Consensus size: 6
38430889 TTACCAAAAC
*
38430899 ATACAT ATACAT ATACAT ACACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
* *
38430947 ATATAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATGCAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
38430995 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
38431043 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
38431091 ATACAT ATACAT A
1 ATACAT ATACAT A
38431104 CGGACATTAA
Statistics
Matches: 193, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 193 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:38432719 original size:16 final size:17
Alignment explanation
Indices: 38432694--38432728 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
38432684 TGAACATGAA
*
38432694 ATTTTTTTTTGT-TTTT
1 ATTTTATTTTGTCTTTT
38432710 ATTTTATTTTGTCTTTT
1 ATTTTATTTTGTCTTTT
38432727 AT
1 AT
38432729 AATTGTCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.11, C:0.03, G:0.06, T:0.80
Consensus pattern (17 bp):
ATTTTATTTTGTCTTTT
Found at i:38433131 original size:20 final size:20
Alignment explanation
Indices: 38433106--38433156 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
38433096 GTATCAATCT
*
38433106 GGTATCGATACT-TTTCTTAA
1 GGTATCGATA-TATTTCCTAA
38433126 GGTATCGATATATTTCCTAA
1 GGTATCGATATATTTCCTAA
*
38433146 GATATCGATAT
1 GGTATCGATAT
38433157 TCCTGGTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (20 bp):
GGTATCGATATATTTCCTAA
Found at i:38451755 original size:16 final size:15
Alignment explanation
Indices: 38451716--38451757 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
38451706 AGATGATAAT
38451716 TATTAATATATAATTA
1 TATTAAT-TATAATTA
*
38451732 TATCAATTATAATATA
1 TATTAATTATAAT-TA
38451748 TATTAATTAT
1 TATTAATTAT
38451758 TATCAGCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:38452371 original size:25 final size:25
Alignment explanation
Indices: 38452311--38452371 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
38452301 CTCCTAAATT
38452311 TTAATTTAATTATCTAATTTTTCAA
1 TTAATTTAATTATCTAATTTTTCAA
*
38452336 TTTATTTAATTAT-TAATATTTT-ATA
1 TTAATTTAATTATCTAAT-TTTTCA-A
*
38452361 TTAATTAAATT
1 TTAATTTAATT
38452372 TTTGAGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (25 bp):
TTAATTTAATTATCTAATTTTTCAA
Found at i:38458447 original size:23 final size:22
Alignment explanation
Indices: 38458400--38458445 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
38458390 GGTTCATGAG
38458400 TTGAACCAAAAATGATGTTAGT
1 TTGAACCAAAAATGATGTTAGT
*
38458422 TTGAACCAAAAATGATGTTGGT
1 TTGAACCAAAAATGATGTTAGT
38458444 TT
1 TT
38458446 TGGATGTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.35
Consensus pattern (22 bp):
TTGAACCAAAAATGATGTTAGT
Found at i:38462305 original size:24 final size:24
Alignment explanation
Indices: 38462277--38462324 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
38462267 GTTTGAATGT
38462277 TTGTTTTATTTAATTAAGTGTGTA
1 TTGTTTTATTTAATTAAGTGTGTA
*
38462301 TTGTTTTATTTGATTAAGTGTGTA
1 TTGTTTTATTTAATTAAGTGTGTA
38462325 CTAGCTAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (24 bp):
TTGTTTTATTTAATTAAGTGTGTA
Found at i:38471435 original size:16 final size:17
Alignment explanation
Indices: 38471408--38471461 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
38471398 CCCCTATTTA
*
38471408 ATTTCCCTCAAACTTTT
1 ATTTCCCCCAAACTTTT
38471425 A-TTCCCCCAAACTTTTT
1 ATTTCCCCCAAAC-TTTT
38471442 ATTTTCCCCCTAAACTTTT
1 A-TTTCCCCC-AAACTTTT
38471461 A
1 A
38471462 CTTCTCACCC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 10 0.31
17 6 0.19
19 12 0.38
20 4 0.12
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTTCCCCCAAACTTTT
Found at i:38471472 original size:20 final size:18
Alignment explanation
Indices: 38471412--38471472 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 18
38471402 TATTTAATTT
38471412 CCCTCAAACTTTTATTC-C
1 CCCT-AAACTTTTATTCTC
*
38471430 CCC-AAACTTTTTATTTTCC
1 CCCTAAAC-TTTTATTCT-C
38471449 CCCTAAACTTTTACTTCTC
1 CCCTAAACTTTTA-TTCTC
38471468 ACCCT
1 -CCCT
38471473 TTACTCTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
16 4 0.11
17 7 0.20
18 3 0.09
19 10 0.29
20 11 0.31
ACGTcount: A:0.21, C:0.38, G:0.00, T:0.41
Consensus pattern (18 bp):
CCCTAAACTTTTATTCTC
Found at i:38482063 original size:36 final size:36
Alignment explanation
Indices: 38481984--38482063 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 36
38481974 GAGCTATGGG
* ** * **
38481984 TTTGTTATCTGATGGATTGGCTTTTATGAGCATCTGG
1 TTTGTT-TCAGATGGATTAACTCTTATGAGCATCTCA
*
38482021 TGTGTTTCAGATGGATTAACTCTTATGAGCATCTCA
1 TTTGTTTCAGATGGATTAACTCTTATGAGCATCTCA
38482057 TTTGTTT
1 TTTGTTT
38482064 TGGTTGGAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
36 30 0.86
37 5 0.14
ACGTcount: A:0.19, C:0.12, G:0.23, T:0.46
Consensus pattern (36 bp):
TTTGTTTCAGATGGATTAACTCTTATGAGCATCTCA
Found at i:38489868 original size:30 final size:30
Alignment explanation
Indices: 38489829--38489971 Score: 223
Period size: 30 Copynumber: 4.8 Consensus size: 30
38489819 TCATAGCTCA
* * * * *
38489829 ATAGTCGAAGTTATCCCTTTTTATAATTTG
1 ATAGCCGAAGCTATCCCATTTCACAATTTG
38489859 ATAGCCGAAGCTATCCCATTTCACAATTTG
1 ATAGCCGAAGCTATCCCATTTCACAATTTG
*
38489889 ATAGCCGAAGATATCCCATTTCACAATTTG
1 ATAGCCGAAGCTATCCCATTTCACAATTTG
38489919 ATAGCCGAAGCTATCCCATTTCACAATTTG
1 ATAGCCGAAGCTATCCCATTTCACAATTTG
*
38489949 ATAGCCGAAGCTATCCCTTTTCA
1 ATAGCCGAAGCTATCCCATTTCA
38489972 TTGTTCGATG
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 105 1.00
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (30 bp):
ATAGCCGAAGCTATCCCATTTCACAATTTG
Found at i:38489993 original size:30 final size:29
Alignment explanation
Indices: 38489959--38490031 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
38489949 ATAGCCGAAG
*
38489959 CTATCCCTTTTCATTGTTCGATGGTCGTCA
1 CTATCCCTTTTCATTATT-GATGGTCGTCA
38489989 CTATCCCTTTTCATTATTGATGGTCGTCA
1 CTATCCCTTTTCATTATTGATGGTCGTCA
* *
38490018 CCAACCCTTTTCAT
1 CTATCCCTTTTCAT
38490032 AATTTGATAG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 23 0.57
30 17 0.43
ACGTcount: A:0.16, C:0.29, G:0.12, T:0.42
Consensus pattern (29 bp):
CTATCCCTTTTCATTATTGATGGTCGTCA
Found at i:38490057 original size:30 final size:30
Alignment explanation
Indices: 38490022--38490092 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
38490012 TCGTCACCAA
* * *
38490022 CCCTTTTCATAATTTGATAGCTGAGGTTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCTAT
* *
38490052 TCCTTTTCATTATTTTGATAGCCGAAGCTAT
1 CCCTTTTCA-TAATTTGATAGCCGAAGCTAT
38490083 CCCTTTTCAT
1 CCCTTTTCAT
38490093 TAGCCAATGA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 9 0.26
31 25 0.74
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (30 bp):
CCCTTTTCATAATTTGATAGCCGAAGCTAT
Found at i:38490072 original size:31 final size:31
Alignment explanation
Indices: 38489829--38490094 Score: 219
Period size: 30 Copynumber: 8.8 Consensus size: 31
38489819 TCATAGCTCA
* * *
38489829 ATAGTCGAAGTTATCCCTTTTTA-TAATTTG
1 ATAGCCGAAGCTATCCCTTTTCATTAATTTG
* *
38489859 ATAGCCGAAGCTATCCCATTTCA-CAATTTG
1 ATAGCCGAAGCTATCCCTTTTCATTAATTTG
* * *
38489889 ATAGCCGAAGATATCCCATTTCA-CAATTTG
1 ATAGCCGAAGCTATCCCTTTTCATTAATTTG
* *
38489919 ATAGCCGAAGCTATCCCATTTCA-CAATTTG
1 ATAGCCGAAGCTATCCCTTTTCATTAATTTG
* *
38489949 ATAGCCGAAGCTATCCCTTTTCATT-GTTCG
1 ATAGCCGAAGCTATCCCTTTTCATTAATTTG
* * *
38489979 ATGGTCGTCA-CTATCCCTTTTCATT-A-TTG
1 ATAGCCG-AAGCTATCCCTTTTCATTAATTTG
* * * * *
38490008 ATGGTCGTCA-CCAACCCTTTTCA-TAATTTG
1 ATAGCCG-AAGCTATCCCTTTTCATTAATTTG
* * * * *
38490038 ATAGCTGAGGTTATTCCTTTTCATTATTTTG
1 ATAGCCGAAGCTATCCCTTTTCATTAATTTG
38490069 ATAGCCGAAGCTATCCCTTTTCATTA
1 ATAGCCGAAGCTATCCCTTTTCATTA
38490095 GCCAATGATT
Statistics
Matches: 198, Mismatches: 32, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
28 1 0.01
29 24 0.12
30 144 0.73
31 29 0.15
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
ATAGCCGAAGCTATCCCTTTTCATTAATTTG
Found at i:38499465 original size:4 final size:4
Alignment explanation
Indices: 38499444--38499484 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 4
38499434 TTAATTAGTT
* *
38499444 TTTA TTTA TATA TATTA TTTA TTTA TTTA TTTA TTTT TTTA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA
38499485 ACAAATATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
4 29 0.91
5 3 0.09
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:38503597 original size:9 final size:9
Alignment explanation
Indices: 38503583--38503619 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
38503573 TATAGTTTGA
38503583 TATTCGAAT
1 TATTCGAAT
38503592 TATTCGAAT
1 TATTCGAAT
*
38503601 TATTCGAGT
1 TATTCGAAT
38503610 TATTCGAAT
1 TATTCGAAT
38503619 T
1 T
38503620 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:38503689 original size:9 final size:9
Alignment explanation
Indices: 38503672--38503702 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
38503662 TCGAGTTGAT
38503672 TCGAATAAC
1 TCGAATAAC
*
38503681 TCGATTAAC
1 TCGAATAAC
38503690 TCGAATAAC
1 TCGAATAAC
38503699 TCGA
1 TCGA
38503703 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:38505642 original size:11 final size:11
Alignment explanation
Indices: 38505626--38505655 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
38505616 TTTTAATTTT
38505626 TAATTTTAAAA
1 TAATTTTAAAA
38505637 TAATTTTAAAA
1 TAATTTTAAAA
*
38505648 TATTTTTA
1 TAATTTTA
38505656 TTTTTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
TAATTTTAAAA
Found at i:38505693 original size:23 final size:25
Alignment explanation
Indices: 38505642--38505695 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
38505632 TAAAATAATT
* * *
38505642 TTAAAATATTTTTATTTTTTTATTT
1 TTAAAATATTTTTATTTGTGTATTA
38505667 TTAAAATATTTTT-TTTGTGT-TTA
1 TTAAAATATTTTTATTTGTGTATTA
38505690 TTAAAA
1 TTAAAA
38505696 ATCGGGCCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 8 0.31
24 5 0.19
25 13 0.50
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (25 bp):
TTAAAATATTTTTATTTGTGTATTA
Found at i:38507572 original size:50 final size:50
Alignment explanation
Indices: 38507516--38507625 Score: 202
Period size: 50 Copynumber: 2.2 Consensus size: 50
38507506 ACCATTTCAA
*
38507516 TCCTTTTCATTAATACATGATATATTTCATTTGAACACTTACCGTTCCTT
1 TCCTTTTCATTAATACATGATATATTTCATTTGAACACTTACCATTCCTT
*
38507566 TCCTTTTCATTAATACATGATATATTTCATTTGAACACTTACCATTTCTT
1 TCCTTTTCATTAATACATGATATATTTCATTTGAACACTTACCATTCCTT
38507616 TCCTTTTCAT
1 TCCTTTTCAT
38507626 GCCCGTTGAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.25, C:0.22, G:0.05, T:0.48
Consensus pattern (50 bp):
TCCTTTTCATTAATACATGATATATTTCATTTGAACACTTACCATTCCTT
Found at i:38515624 original size:17 final size:19
Alignment explanation
Indices: 38515592--38515626 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
38515582 ATTATTATTT
38515592 TTTCATTTTTCTTCTCATC
1 TTTCATTTTTCTTCTCATC
38515611 TTTC-TTTTTC-TCTCAT
1 TTTCATTTTTCTTCTCAT
38515627 ATTTTCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 6 0.38
19 4 0.25
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTCATTTTTCTTCTCATC
Found at i:38515632 original size:18 final size:18
Alignment explanation
Indices: 38515590--38515639 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
38515580 GAATTATTAT
38515590 TTTTTCATTTTTCTTCTCA
1 TTTTTC-TTTTTCTTCTCA
*
38515609 TCTTTCTTTTTC-TCTCA
1 TTTTTCTTTTTCTTCTCA
38515626 TATTTTCTCTTTTC
1 T-TTTTCT-TTTTC
38515640 CACCACCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 6 0.22
18 11 0.41
19 10 0.37
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTCTTTTTCTTCTCA
Found at i:38519219 original size:37 final size:37
Alignment explanation
Indices: 38519169--38519260 Score: 166
Period size: 37 Copynumber: 2.5 Consensus size: 37
38519159 TAAATAGCCT
38519169 AGTGGTTAAGTGTGTGAATGTATTCCAAGTGGTTCCA
1 AGTGGTTAAGTGTGTGAATGTATTCCAAGTGGTTCCA
*
38519206 AGTGGTTAAGTGTGTGAATGTATTCGAAGTGGTTCCA
1 AGTGGTTAAGTGTGTGAATGTATTCCAAGTGGTTCCA
*
38519243 AGTGGTTAAGTGTCTGAA
1 AGTGGTTAAGTGTGTGAA
38519261 CACCCTTGCT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.25, C:0.09, G:0.32, T:0.35
Consensus pattern (37 bp):
AGTGGTTAAGTGTGTGAATGTATTCCAAGTGGTTCCA
Found at i:38529087 original size:51 final size:51
Alignment explanation
Indices: 38528924--38529108 Score: 189
Period size: 51 Copynumber: 3.6 Consensus size: 51
38528914 GAAGTTGCTA
* *
38528924 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-ATGAAAAT
* * * * * ***
38528974 GGTCGCATGTGTAGTACTATGTGCAAGCTACTATGCGTA-CTAGAT-AGCTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GGATGAAAAT
* * *
38529024 CGATCACGTGTGTAGTACTATGTGCAGCCTACTACGTGTATCGGATGAAAAT
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAAT
*
38529076 GGTCACATGTGTAGTACCATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTA
38529109 TGTGAACCGG
Statistics
Matches: 105, Mismatches: 24, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
49 3 0.03
50 35 0.33
51 64 0.61
52 3 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAAT
Found at i:38533151 original size:26 final size:26
Alignment explanation
Indices: 38533115--38533166 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
38533105 CACCACTGAA
* *
38533115 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
38533141 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
38533167 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:38533240 original size:70 final size:71
Alignment explanation
Indices: 38533127--38533276 Score: 232
Period size: 71 Copynumber: 2.1 Consensus size: 71
38533117 GGGGAATCAT
* *
38533127 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
38533191 ATATCG
66 ATATCG
***
38533197 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATG
38533261 GATATCG
65 GATATCG
38533268 CACTTAGCA
1 CACTTAGCA
38533277 CCACCAATGA
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
70 23 0.32
71 50 0.68
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAATGG
ATATCG
Found at i:38533312 original size:76 final size:70
Alignment explanation
Indices: 38533127--38533314 Score: 227
Period size: 71 Copynumber: 2.6 Consensus size: 70
38533117 GGGGAATCAT
* *
38533127 CACTTAGCAACCCCT-CGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAA-CCCCTTTACATTTCAAAGATACAATGG
38533191 ATATCG
65 ATATCG
* ***
38533197 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCTTTCACATTTCAAAGATATGGTGG
1 CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCTTT-ACATTTCAAAGATACAATGG
38533262 ATATCG
65 ATATCG
*
38533268 CACTTAGC-ACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCT
1 CACTTAGCAACC-CC--T---CCGGGGAATCAGCACATAGCAACCCCT
38533315 CGGGGGAATC
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
70 25 0.25
71 51 0.50
73 1 0.01
76 25 0.25
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (70 bp):
CACTTAGCAACCCCTCCGGGGAATCAGCACATAGCAACCCCTTTACATTTCAAAGATACAATGGA
TATCG
Found at i:38533318 original size:103 final size:104
Alignment explanation
Indices: 38533196--38533418 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
38533186 AATGGATATC
38533196 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
38533260 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
38533299 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
38533364 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
38533403 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
38533419 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 38 0.34
104 73 0.65
105 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:38533780 original size:29 final size:29
Alignment explanation
Indices: 38533747--38533810 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
38533737 TAATCCACCA
38533747 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
38533776 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
38533806 CCCAA
1 CCCAA
38533811 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:38533784 original size:30 final size:30
Alignment explanation
Indices: 38533754--38533810 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
38533744 CCACCCAACT
38533754 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
38533783 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
38533811 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:38546786 original size:20 final size:19
Alignment explanation
Indices: 38546777--38546856 Score: 67
Period size: 20 Copynumber: 4.1 Consensus size: 19
38546767 TTATTAAATT
38546777 TTAGAAAAATATATAAAAA
1 TTAGAAAAATATATAAAAA
*
38546796 TTAGAAAAAATAAATAAAAA
1 TTAG-AAAAATATATAAAAA
38546816 TCGTA-AAAAAT-TATAAAATA
1 T--TAGAAAAATATATAAAA-A
* *
38546836 TATAGAAATATA-AGAAAAA
1 T-TAGAAAAATATATAAAAA
38546855 TT
1 TT
38546857 TTAAAATTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
18 1 0.02
19 14 0.28
20 33 0.66
22 2 0.04
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.26
Consensus pattern (19 bp):
TTAGAAAAATATATAAAAA
Found at i:38546793 original size:19 final size:20
Alignment explanation
Indices: 38546761--38546804 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
38546751 TTCAAATATT
* **
38546761 AAAAATTTATTAAATTTTAG
1 AAAAATATATTAAAAATTAG
38546781 AAAAATATA-TAAAAATTAG
1 AAAAATATATTAAAAATTAG
38546800 AAAAA
1 AAAAA
38546805 ATAAATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (20 bp):
AAAAATATATTAAAAATTAG
Found at i:38546794 original size:10 final size:10
Alignment explanation
Indices: 38546754--38546847 Score: 54
Period size: 10 Copynumber: 9.7 Consensus size: 10
38546744 AAAAAAATTC
38546754 AAATAT-TAA
1 AAATATATAA
* *
38546763 AAATTTATTA
1 AAATATATAA
* * *
38546773 AATTTTAGAA
1 AAATATATAA
38546783 AAATATATAA
1 AAATATATAA
*
38546793 AAAT-TAGAAA
1 AAATATA-TAA
*
38546803 AAATAAATAA
1 AAATATATAA
*
38546813 AAATCGTA-AA
1 AAAT-ATATAA
38546823 AAAT-TAT-A
1 AAATATATAA
*
38546831 AAATATATAG
1 AAATATATAA
38546841 AAATATA
1 AAATATA
38546848 AGAAAAATTT
Statistics
Matches: 64, Mismatches: 14, Indels: 13
0.70 0.15 0.14
Matches are distributed among these distances:
8 7 0.11
9 10 0.16
10 45 0.70
11 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (10 bp):
AAATATATAA
Found at i:38546929 original size:20 final size:21
Alignment explanation
Indices: 38546859--38546929 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 21
38546849 GAAAAATTTT
* *
38546859 AAAATTTTAAA-AAGTCGTAAG
1 AAAATTATAAATAA-TCGTAAA
*
38546880 AAAATTATACATAAT-GTAAA
1 AAAATTATAAATAATCGTAAA
* *
38546900 GAAA-TATAAAT-TTCGTAAA
1 AAAATTATAAATAATCGTAAA
38546919 AAAATTATAAA
1 AAAATTATAAA
38546930 AATTATCGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
18 1 0.03
19 14 0.35
20 13 0.32
21 10 0.25
22 2 0.05
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.30
Consensus pattern (21 bp):
AAAATTATAAATAATCGTAAA
Found at i:38547001 original size:18 final size:19
Alignment explanation
Indices: 38546952--38547002 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
38546942 AAAAAAAATA
38546952 TTTTATAATTTTTCTATAT
1 TTTTATAATTTTTCTATAT
* *
38546971 TTTTATTGA-TTTT-TATTT
1 TTTTA-TAATTTTTCTATAT
*
38546989 TTTTATCATTTTTC
1 TTTTATAATTTTTC
38547003 GCCAATGTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 2 0.08
18 13 0.50
19 9 0.35
20 2 0.08
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTATAATTTTTCTATAT
Found at i:38550040 original size:56 final size:56
Alignment explanation
Indices: 38549952--38550059 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
38549942 GGATTACAGG
* * *
38549952 TGTAAGACCATACCTTGGCTATGACATCCGTTAAAGTCTGCCATGACATTAACCAT
1 TGTAAGACCATACCTCGACTATGACATCCGTTAAAGTCTGCCAGGACATTAACCAT
* * * *
38550008 TGTAAGACCATAGCTCGACTATGGCATTCGTTAAAGTCTGCTAGGACATTAA
1 TGTAAGACCATACCTCGACTATGACATCCGTTAAAGTCTGCCAGGACATTAA
38550060 ACATGGGGAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (56 bp):
TGTAAGACCATACCTCGACTATGACATCCGTTAAAGTCTGCCAGGACATTAACCAT
Found at i:38557300 original size:27 final size:27
Alignment explanation
Indices: 38557269--38557326 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
38557259 AGTTTCCTTA
38557269 TCTTGTACAAGTGGAATAACAGCTATT
1 TCTTGTACAAGTGGAATAACAGCTATT
38557296 TCTTGTACAAGTGGAATAACAGCTATT
1 TCTTGTACAAGTGGAATAACAGCTATT
38557323 TCTT
1 TCTT
38557327 TGGGGGTGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (27 bp):
TCTTGTACAAGTGGAATAACAGCTATT
Found at i:38558245 original size:21 final size:22
Alignment explanation
Indices: 38558205--38558245 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
38558195 AAATATATAA
*
38558205 TAATTTACAAAATTTTAAGTGT
1 TAATTTACAAAATTTCAAGTGT
*
38558227 TAATTTA-AGAATTTCAAGT
1 TAATTTACAAAATTTCAAGT
38558246 TTTATTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (22 bp):
TAATTTACAAAATTTCAAGTGT
Found at i:38559915 original size:21 final size:23
Alignment explanation
Indices: 38559867--38559915 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
38559857 TAGATGCTCT
*
38559867 TTGGCCATATGTATGATGTTCAG
1 TTGGCCATATGTAGGATGTTCAG
38559890 TTGGCCACTA-GTAGGA-GTTC-G
1 TTGGCCA-TATGTAGGATGTTCAG
38559911 TTGGC
1 TTGGC
38559916 ATGCTCTCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.25
22 4 0.17
23 12 0.50
24 2 0.08
ACGTcount: A:0.18, C:0.16, G:0.31, T:0.35
Consensus pattern (23 bp):
TTGGCCATATGTAGGATGTTCAG
Found at i:38564825 original size:23 final size:23
Alignment explanation
Indices: 38564797--38564841 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
38564787 CCACTATACC
*
38564797 AAATGAACATGCAAAATGCAACA
1 AAATGAACATACAAAATGCAACA
*
38564820 AAATGATCATACAAAATGCAAC
1 AAATGAACATACAAAATGCAAC
38564842 CTAGATGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.56, C:0.18, G:0.11, T:0.16
Consensus pattern (23 bp):
AAATGAACATACAAAATGCAACA
Found at i:38565609 original size:15 final size:14
Alignment explanation
Indices: 38565580--38565620 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
38565570 ATATCTTACT
*
38565580 ATTAT-TATAAAAC
1 ATTATATATAATAC
38565593 ATTATATCATAATAC
1 ATTATAT-ATAATAC
38565608 ATTATATATAATA
1 ATTATATATAATA
38565621 ATCCTATTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 5 0.20
14 7 0.28
15 13 0.52
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTATATATAATAC
Found at i:38568063 original size:12 final size:12
Alignment explanation
Indices: 38568046--38568071 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
38568036 ATAAACACAA
38568046 AAAATATTTTTT
1 AAAATATTTTTT
38568058 AAAATATTTTTT
1 AAAATATTTTTT
38568070 AA
1 AA
38568072 CTCAGATTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
AAAATATTTTTT
Found at i:38572381 original size:19 final size:19
Alignment explanation
Indices: 38572357--38572393 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
38572347 TGTTGTCACT
38572357 GTTTAATAATAGATCATTC
1 GTTTAATAATAGATCATTC
38572376 GTTTAATAATAGATCATT
1 GTTTAATAATAGATCATT
38572394 GTTGTCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (19 bp):
GTTTAATAATAGATCATTC
Found at i:38592194 original size:69 final size:69
Alignment explanation
Indices: 38592102--38592544 Score: 539
Period size: 69 Copynumber: 6.4 Consensus size: 69
38592092 AGGTCCATTG
* * * *
38592102 TTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGGTGACATGTTCCAA-GGGAAGAGCTCAT
1 TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTT-CAAGGGGAAGAGCTCAT
*
38592166 CTGTT
65 CTATT
** * * * * *
38592171 TTTGGGGAATCTGTTCCAAGCACCCCTGCTTATGCAGATAACATGTTCCAGGGGAAGGGCTCATC
1 TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGCTCATC
*
38592236 TGTT
66 TATT
* * * * *
38592240 TTTGCAGATTCTGTTCCAAGCACTCCGGCCTATGCAGATAGCATGTTTAAGGGGAAGAGTTCGTC
1 TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGCTCAT-
*
38592305 CT-TG
65 CTATT
* * ** * *
38592309 TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACTTGTTTAAGGGTCAGGGTTCATC
1 TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGCTCATC
* *
38592374 CATA
66 TATT
* * * * *
38592378 TTTGGAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACTTGTTCAAGGGGAAGGGTTCGTC
1 TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGCTCATC
* *
38592443 CATA
66 TATT
38592447 TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGCTCATC
1 TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGCTCATC
38592512 TATT
66 TATT
*
38592516 TTTGCAGATTCTGTTCCAAGCACCCCTGC
1 TTTGCAGATTCTGTTCCAAGCACTCCTGC
38592545 TTATCATTAT
Statistics
Matches: 327, Mismatches: 44, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
68 3 0.01
69 322 0.98
70 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (69 bp):
TTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCAAGGGGAAGAGCTCATC
TATT
Found at i:38592454 original size:207 final size:207
Alignment explanation
Indices: 38592094--38592544 Score: 600
Period size: 207 Copynumber: 2.2 Consensus size: 207
38592084 CCAGGGAAAG
* *
38592094 GTCCATTGTTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGGTGACATGTTCCAAGGGAAG
1 GTCC-TTGTTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGATAACATGTTCCAAGGGAAG
** * * * *
38592159 AGCTCATCTGTTTTTGGGGAATCTGTTCCAAGCACCCCTGCTTATGCAGATAACATGTTCCAGGG
65 AGCTCATCCATATTTGGAGAATCTGTTCCAAGCACCCCTGCCTATGCAGATAACATGTTCAAGGG
** * * *
38592224 GAAGGGCTCATCTGTTTTTGCAGATTCTGTTCCAAGCACTCCGGCCTATGCAGATAGCATGTTTA
130 GAAGGGCTCATCCATATTTGCAGATTCTGTTCCAAGCACTCCGGCCTATGCAGATAACATGTTCA
*
38592289 AGGGGAAGAGTTC
195 AGGGGAAGAGCTC
* * * * *
38592302 GTCCTTGTTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACTTGTT-TAAGGGTCAG
1 GTCCTTGTTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGATAACATGTTCCAAGGG-AAG
* * * * *
38592366 GGTTCATCCATATTTGGAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACTTGTTCAAGGG
65 AGCTCATCCATATTTGGAGAATCTGTTCCAAGCACCCCTGCCTATGCAGATAACATGTTCAAGGG
* * *
38592431 GAAGGGTTCGTCCATATTTGCAGATTCTGTTCCAAGCACTCCTGCCTATGCAGATAACATGTTCA
130 GAAGGGCTCATCCATATTTGCAGATTCTGTTCCAAGCACTCCGGCCTATGCAGATAACATGTTCA
38592496 AGGGGAAGAGCTC
195 AGGGGAAGAGCTC
* *
38592509 AT-CTATTTTTGCAGATTCTGTTCCAAGCACCCCTGC
1 GTCCT-TGTTTGCAGATTCTGTTCCAAGCACCCCTGC
38592545 TTATCATTAT
Statistics
Matches: 211, Mismatches: 30, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
206 7 0.03
207 200 0.95
208 4 0.02
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.30
Consensus pattern (207 bp):
GTCCTTGTTTGCAGATTCTGTTCCAAGCACCCCTGCCTACGCAGATAACATGTTCCAAGGGAAGA
GCTCATCCATATTTGGAGAATCTGTTCCAAGCACCCCTGCCTATGCAGATAACATGTTCAAGGGG
AAGGGCTCATCCATATTTGCAGATTCTGTTCCAAGCACTCCGGCCTATGCAGATAACATGTTCAA
GGGGAAGAGCTC
Found at i:38608001 original size:183 final size:183
Alignment explanation
Indices: 38607693--38608063 Score: 715
Period size: 183 Copynumber: 2.0 Consensus size: 183
38607683 AATAAATTAT
*
38607693 GATTTATTTTATATATTTCAGTGACCATATAGTGATGCCATATTATATTGTTTGTATTTCTGACA
1 GATTTATTTCATATATTTCAGTGACCATATAGTGATGCCATATTATATTGTTTGTATTTCTGACA
38607758 TGCATGGCACCTTACAGGAAGAGTTCTGTCAATGAAAATTTGTTCCAACTTTTAATCCGTGCAAG
66 TGCATGGCACCTTACAGGAAGAGTTCTGTCAATGAAAATTTGTTCCAACTTTTAATCCGTGCAAG
38607823 TTGCATCTCTTTACTGTTCTCAGATGTTTCACATTTATGCTATTTGGATACCA
131 TTGCATCTCTTTACTGTTCTCAGATGTTTCACATTTATGCTATTTGGATACCA
*
38607876 GATTTATTTCATATATTTCAGTGATCATATAGTGATGCCATATTATATTGTTTGTATTTCTGACA
1 GATTTATTTCATATATTTCAGTGACCATATAGTGATGCCATATTATATTGTTTGTATTTCTGACA
38607941 TGCATGGCACCTTACAGGAAGAGTTCTGTCAATGAAAATTTGTTCCAACTTTTAATCCGTGCAAG
66 TGCATGGCACCTTACAGGAAGAGTTCTGTCAATGAAAATTTGTTCCAACTTTTAATCCGTGCAAG
38608006 TTGCATCTCTTTACTGTTCTCAGATGTTTCACATTTATGCTATTTGGATACCA
131 TTGCATCTCTTTACTGTTCTCAGATGTTTCACATTTATGCTATTTGGATACCA
*
38608059 AATTT
1 GATTT
38608064 TCCATAATTA
Statistics
Matches: 185, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 185 1.00
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (183 bp):
GATTTATTTCATATATTTCAGTGACCATATAGTGATGCCATATTATATTGTTTGTATTTCTGACA
TGCATGGCACCTTACAGGAAGAGTTCTGTCAATGAAAATTTGTTCCAACTTTTAATCCGTGCAAG
TTGCATCTCTTTACTGTTCTCAGATGTTTCACATTTATGCTATTTGGATACCA
Found at i:38636120 original size:31 final size:31
Alignment explanation
Indices: 38636058--38636120 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
38636048 TAGCCCGGTA
* * * *
38636058 ACTTAAATTAAAACTTTTAAATAGTTTAATG
1 ACTTAAATAAAAACTTTCAAATAATTCAATG
*
38636089 ACTTAAATAAAAACTTTCGAATAATTCAATG
1 ACTTAAATAAAAACTTTCAAATAATTCAATG
38636120 A
1 A
38636121 TCAAATTGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.37
Consensus pattern (31 bp):
ACTTAAATAAAAACTTTCAAATAATTCAATG
Found at i:38643432 original size:16 final size:16
Alignment explanation
Indices: 38643413--38643446 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
38643403 CCCAAATATA
38643413 TCCCTCAAAAAATTTC
1 TCCCTCAAAAAATTTC
38643429 TCCCTCAAAAAATTTC
1 TCCCTCAAAAAATTTC
38643445 TC
1 TC
38643447 AGAGAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (16 bp):
TCCCTCAAAAAATTTC
Found at i:38645820 original size:51 final size:51
Alignment explanation
Indices: 38645726--38645910 Score: 133
Period size: 51 Copynumber: 3.6 Consensus size: 51
38645716 CCGGTTCACA
** ***
38645726 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACATGACCAAGCTCATCCGATACACG
* * * *
38645777 TAGTAGCCTGCACATAGTACTACACACATGATCGAAGCT-ATCCGGTACGCT
1 TAGTAGCCTGCACATAGTACTACACACATGA-CCAAGCTCATCCGATACACG
* * * *** * * * *
38645828 TAATAGCATGCACATAATACTACACATGCGACCTA--TCATTCTGGTACATG
1 TAGTAGCCTGCACATAGTACTACACACATGACCAAGCTCA-TCCGATACACG
* * *
38645878 TAGTAGCCTGCACATGGTACTACAAACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACATGACC
38645911 TAGCAACTTC
Statistics
Matches: 103, Mismatches: 28, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 35 0.34
51 63 0.61
52 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACATGACCAAGCTCATCCGATACACG
Found at i:38646093 original size:16 final size:16
Alignment explanation
Indices: 38646068--38646112 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
38646058 TCCAATTCAA
*
38646068 AAAATCACATTTTGAC
1 AAAATTACATTTTGAC
38646084 AAAATTACATTTTGAC
1 AAAATTACATTTTGAC
38646100 AAAATTACATTTT
1 AAAATTACATTTT
38646113 TTCCCCTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.38
Consensus pattern (16 bp):
AAAATTACATTTTGAC
Found at i:38649605 original size:114 final size:114
Alignment explanation
Indices: 38649376--38649690 Score: 341
Period size: 113 Copynumber: 2.8 Consensus size: 114
38649366 AAGAAAATCA
* * * * * * * * *
38649376 TTAGCGGCG-TTTACAACCACACGCCGCAAAATCTCCTATCCAAAATGCAACGTTTTCA-TCTTT
1 TTAGCGGCGTTTTACAACAACGCGCCGTAAAATCTCCTAACCAAAACGCATCGTTTTTAGTGTTG
* * * * *
38649439 ATGTATGCAAGAATTAGTGGCACTTCAAAAAACACGCCGCTAAAGTGTC
66 ATGTATACTAGAATTAGTGGCGCTTCAAAAAACACGCCGCAAAAGCGTC
* **
38649488 TTAGCAGCGTTTTACAACAACGCGCCGTAATTTCTCCTAACCAAAACGCATCGTTTTTAGTGTTG
1 TTAGCGGCGTTTTACAACAACGCGCCGTAAAATCTCCTAACCAAAACGCATCGTTTTTAGTGTTG
* * *
38649553 ATGTATCCTAGAATTAGTGGCGTTTCTTAAAAA-ACGCCGCAAAAGCGTC
66 ATGTATACTAGAATTAGTGGCGCTTC-AAAAAACACGCCGCAAAAGCGTC
* * * * * * *
38649602 TTAGCGGCGTTTTGCGA-TATGCGCCGTAAAATATCTTAACCAAAACGCATCGTTTTTGGTGTTG
1 TTAGCGGCGTTTTACAACAACGCGCCGTAAAATCTCCTAACCAAAACGCATCGTTTTTAGTGTTG
*
38649666 ATGTATACTAGATTTAGTGGCGCTT
66 ATGTATACTAGAATTAGTGGCGCTT
38649691 TGTGATATGC
Statistics
Matches: 168, Mismatches: 32, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
112 8 0.05
113 102 0.61
114 53 0.32
115 5 0.03
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (114 bp):
TTAGCGGCGTTTTACAACAACGCGCCGTAAAATCTCCTAACCAAAACGCATCGTTTTTAGTGTTG
ATGTATACTAGAATTAGTGGCGCTTCAAAAAACACGCCGCAAAAGCGTC
Found at i:38650455 original size:266 final size:266
Alignment explanation
Indices: 38649739--38650539 Score: 1271
Period size: 259 Copynumber: 3.0 Consensus size: 266
38649729 TCGTAGAAAG
*
38649739 CGCCGC-AAAATATCTTTACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCG
1 CGCCGCAAAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCG
* * *
38649803 CTTACTAGAAAACGCTGTTAAAGAATAGATTTAGCGGCGCTTGAGCCAAAGCGCCGCAACATATC
66 CTTACTAGAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATC
*
38649868 TTAACAAAACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAAAGCCG
131 TTAACAAAACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCG
* * *
38649933 TAAAAAATCTGAACCAAAATGCACCGTTTTGGTCTCGATGTATACTTTAATTAGTGGCGTTGACG
196 TAAAATATCTGAACCAAAATGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACG
38649998 TTAAAA
261 TTAAAA
*
38650004 CGCCGCAAAAATATCTTAACTAAAACGCATAGTTTTAA-TTT--TG---A-TTATATTAGTGGCG
1 CGCCGCAAAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCG
* * *
38650062 CTTACTAGAAAACGCCGTTAAAGAATATCATTAGCGGCGCTTGAGCCAAAGCGCCGCAAAGTATC
66 CTTACTAGAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATC
* *
38650127 TTAACAAAACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCGTATAGTAAAACGCCG
131 TTAACAAAACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCG
* * * *
38650192 CAAAATATCTGAAGCAAAACGCACCGTTTTGGTCTCAATGTATACTTCAATTAGTGGCGCTGACG
196 TAAAATATCTGAACCAAAATGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACG
*
38650257 TTGAAA
261 TTAAAA
38650263 CGCCGCAAAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCG
1 CGCCGCAAAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCG
* * * *
38650328 CTTATTAGAAAACGCCGTTAAAAAATAGCTTTAGCGGCACTTTG-GATC-AAGCGCCGCAACGTA
66 CTTACTAGAAAACGCCGTTAAAGAATAGCTTTAGCGGCGC-TTGAG-CCAAAGCGCCGCAACGTA
* * *
38650391 TCTTAACAAAACGCAGTGTTTTGTCTTAAGCTATGTTACATTTGGTGGCACTTATAGGAAAACGC
129 TCTTAACAAAACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGC
*
38650456 CGTAAAATATCTGAACCAAAATGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGGTGCTGA
194 CGTAAAATATCTGAACCAAAATGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGA
38650521 CGTTAAAA
259 CGTTAAAA
38650529 CGCCGCAAAAA
1 CGCCGCAAAAA
38650540 AGCAAAATAC
Statistics
Matches: 488, Mismatches: 38, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
259 235 0.48
260 4 0.01
262 2 0.00
263 2 0.00
265 10 0.02
266 231 0.47
267 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (266 bp):
CGCCGCAAAAATATCTTAACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCG
CTTACTAGAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATC
TTAACAAAACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCG
TAAAATATCTGAACCAAAATGCACCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACG
TTAAAA
Found at i:38651138 original size:15 final size:14
Alignment explanation
Indices: 38651118--38651167 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
38651108 TAAGGTTTGT
38651118 AGTTTAGGGTTTAA
1 AGTTTAGGGTTTAA
**
38651132 GAGTTTAAAGTTTAA
1 -AGTTTAGGGTTTAA
*
38651147 AGGTTACGGGTTTAA
1 AGTTTA-GGGTTTAA
38651162 AGTTTA
1 AGTTTA
38651168 AAGGTTACGG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 5 0.18
15 23 0.82
ACGTcount: A:0.32, C:0.02, G:0.26, T:0.40
Consensus pattern (14 bp):
AGTTTAGGGTTTAA
Found at i:38651143 original size:22 final size:21
Alignment explanation
Indices: 38651118--38651174 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
38651108 TAAGGTTTGT
*
38651118 AGTTTAGGGTTTAAGAGTTTAA
1 AGTTTAAGG-TTAAGAGTTTAA
* *
38651140 AGTTTAAAGGTTACGGGTTTAA
1 AGTTT-AAGGTTAAGAGTTTAA
38651162 AGTTTAAAGGTTA
1 AGTTT-AAGGTTA
38651175 CGGGTTAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 28 0.90
23 3 0.10
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (21 bp):
AGTTTAAGGTTAAGAGTTTAA
Found at i:38651144 original size:29 final size:30
Alignment explanation
Indices: 38651088--38651170 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 30
38651078 TTTTGAGTGT
* * *
38651088 AAGGTTACGGGTTT-AGAGTGTAAGGTTTG
1 AAGGTTACGGGTTTAAGAGTTTAAAGTTTA
* *
38651117 TAGTTTA-GGGTTTAAGAGTTTAAAGTTTA
1 AAGGTTACGGGTTTAAGAGTTTAAAGTTTA
38651146 AAGGTTACGGGTTTAA-AGTTTAAAG
1 AAGGTTACGGGTTTAAGAGTTTAAAG
38651171 GTTACGGGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
28 6 0.13
29 31 0.69
30 8 0.18
ACGTcount: A:0.30, C:0.02, G:0.30, T:0.37
Consensus pattern (30 bp):
AAGGTTACGGGTTTAAGAGTTTAAAGTTTA
Found at i:38651173 original size:15 final size:15
Alignment explanation
Indices: 38651125--38651173 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
38651115 TGTAGTTTAG
38651125 GGTTTAAGAGTTTAAA
1 GGTTTAA-AGTTTAAA
* **
38651141 -GTTTAAAGGTTACG
1 GGTTTAAAGTTTAAA
38651155 GGTTTAAAGTTTAAA
1 GGTTTAAAGTTTAAA
38651170 GGTT
1 GGTT
38651174 ACGGGTTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.39
Consensus pattern (15 bp):
GGTTTAAAGTTTAAA
Found at i:38651175 original size:22 final size:22
Alignment explanation
Indices: 38651134--38651186 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
38651124 GGGTTTAAGA
38651134 GTTTAAAGTTTAAAGGTTACGG
1 GTTTAAAGTTTAAAGGTTACGG
38651156 GTTTAAAGTTTAAAGGTTACGG
1 GTTTAAAGTTTAAAGGTTACGG
38651178 G-TTAAAGTT
1 GTTTAAAGTT
38651187 AGGGGCCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 8 0.26
22 23 0.74
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (22 bp):
GTTTAAAGTTTAAAGGTTACGG
Found at i:38651277 original size:21 final size:23
Alignment explanation
Indices: 38651235--38651277 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
38651225 CATTTAAGGG
* *
38651235 ATATGTTAAAAACATTGGAAAAT
1 ATATGTTAAAAACATAGAAAAAT
38651258 ATATGTT-AAAA-ATAGAAAAA
1 ATATGTTAAAAACATAGAAAAA
38651278 AGTGAAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 4 0.22
23 7 0.39
ACGTcount: A:0.58, C:0.02, G:0.12, T:0.28
Consensus pattern (23 bp):
ATATGTTAAAAACATAGAAAAAT
Found at i:38651780 original size:39 final size:40
Alignment explanation
Indices: 38651725--38651803 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
38651715 TCCCTAATTT
* * *
38651725 CCCATTTCGTATTCCCCCA-ATTCCCCGATTTCATTTCCC
1 CCCAATTCCTATTCCCCCAGATTCCCCGATTTAATTTCCC
*
38651764 CCCAATTCCTATTCCCCCAGTTTCCCCGATTTAATTTCCC
1 CCCAATTCCTATTCCCCCAGATTCCCCGATTTAATTTCCC
38651804 TAAATCCCCA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 17 0.49
40 18 0.51
ACGTcount: A:0.16, C:0.43, G:0.05, T:0.35
Consensus pattern (40 bp):
CCCAATTCCTATTCCCCCAGATTCCCCGATTTAATTTCCC
Found at i:38653443 original size:22 final size:23
Alignment explanation
Indices: 38653418--38653463 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
38653408 TTATGAATTC
38653418 GGTTTATAAACT-ACTCATTTAT
1 GGTTTATAAACTGACTCATTTAT
* * *
38653440 GGTTTGTAACCTGATTCATTTAT
1 GGTTTATAAACTGACTCATTTAT
38653463 G
1 G
38653464 AATTCAGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (23 bp):
GGTTTATAAACTGACTCATTTAT
Found at i:38653819 original size:15 final size:15
Alignment explanation
Indices: 38653795--38653827 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
38653785 AAGGTTTCTA
*
38653795 TATTAGTATTAAATT
1 TATTACTATTAAATT
38653810 TATTACTATTAAATT
1 TATTACTATTAAATT
38653825 TAT
1 TAT
38653828 AAAATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (15 bp):
TATTACTATTAAATT
Found at i:38653842 original size:93 final size:92
Alignment explanation
Indices: 38653741--38654037 Score: 368
Period size: 93 Copynumber: 3.3 Consensus size: 92
38653731 TTCTAAATAA
38653741 TTATAAATATTGTTTTAATATCTATATAAGTTTTCTAAATTTATAAGGTTTCTATATTAGTATTA
1 TTATAAATATTGTTTTAATATCTATATAAGTTTTCTAAATTTATAAGGTTTCTATATTAGTATTA
38653806 AATTTATTACTATTAAATTTATAAAATT
66 AATTTATTA-TATTAAATTTATAAAATT
* * * * * *
38653834 TTATAAATATTGTTTTAATATCTATATTAGTATTATAAA--TAT--TGTTT-TAATATAACCTA-
1 TTATAAATATTGTTTTAATATCTATATAAGTTTTCTAAATTTATAAGGTTTCT-ATATTA-GTAT
*
38653893 TAAA---ATT-TA--AAAGTTT-TCAAAATAA
64 TAAATTTATTATATTAAA-TTTAT-AAAAT-T
*
38653918 TTATAAATATTGTTTTAATATCTATATAAATTTTCTAAATTTATAAGGTTTCTATATTAGTATTA
1 TTATAAATATTGTTTTAATATCTATATAAGTTTTCTAAATTTATAAGGTTTCTATATTAGTATTA
38653983 AATTTATTAGTATTAAATTTATAAAATT
66 AATTTATTA-TATTAAATTTATAAAATT
38654011 TTATAAATATTGTTTTAATATCTATAT
1 TTATAAATATTGTTTTAATATCTATAT
38654038 TAGTATTATA
Statistics
Matches: 170, Mismatches: 15, Indels: 38
0.76 0.07 0.17
Matches are distributed among these distances:
82 4 0.02
83 8 0.05
84 37 0.22
86 6 0.04
87 2 0.01
88 14 0.08
89 14 0.08
90 2 0.01
91 6 0.04
93 65 0.38
94 8 0.05
95 4 0.02
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (92 bp):
TTATAAATATTGTTTTAATATCTATATAAGTTTTCTAAATTTATAAGGTTTCTATATTAGTATTA
AATTTATTATATTAAATTTATAAAATT
Found at i:38653954 original size:177 final size:177
Alignment explanation
Indices: 38653729--38654115 Score: 747
Period size: 177 Copynumber: 2.2 Consensus size: 177
38653719 AATGATAACA
* *
38653729 TTTTCTAAATAATTATAAATATTGTTTTAATATCTATATAAGTTTTCTAAATTTATAAGGTTTCT
1 TTTTCAAAATAATTATAAATATTGTTTTAATATCTATATAAATTTTCTAAATTTATAAGGTTTCT
38653794 ATATTAGTATTAAATTTATTACTATTAAATTTATAAAATTTTATAAATATTGTTTTAATATCTAT
66 ATATTAGTATTAAATTTATTACTATTAAATTTATAAAATTTTATAAATATTGTTTTAATATCTAT
38653859 ATTAGTATTATAAATATTGTTTTAATATAACCTATAAAATTTAAAAG
131 ATTAGTATTATAAATATTGTTTTAATATAACCTATAAAATTTAAAAG
38653906 TTTTCAAAATAATTATAAATATTGTTTTAATATCTATATAAATTTTCTAAATTTATAAGGTTTCT
1 TTTTCAAAATAATTATAAATATTGTTTTAATATCTATATAAATTTTCTAAATTTATAAGGTTTCT
*
38653971 ATATTAGTATTAAATTTATTAGTATTAAATTTATAAAATTTTATAAATATTGTTTTAATATCTAT
66 ATATTAGTATTAAATTTATTACTATTAAATTTATAAAATTTTATAAATATTGTTTTAATATCTAT
38654036 ATTAGTATTATAAATATTGTTTTAATATAACCTATAAAATTTAAAAG
131 ATTAGTATTATAAATATTGTTTTAATATAACCTATAAAATTTAAAAG
38654083 TTTTCAAAATAATTATAAATATTGTTTTAATAT
1 TTTTCAAAATAATTATAAATATTGTTTTAATAT
38654116 TAAATTTATT
Statistics
Matches: 207, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
177 207 1.00
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (177 bp):
TTTTCAAAATAATTATAAATATTGTTTTAATATCTATATAAATTTTCTAAATTTATAAGGTTTCT
ATATTAGTATTAAATTTATTACTATTAAATTTATAAAATTTTATAAATATTGTTTTAATATCTAT
ATTAGTATTATAAATATTGTTTTAATATAACCTATAAAATTTAAAAG
Found at i:38653957 original size:32 final size:32
Alignment explanation
Indices: 38653918--38654063 Score: 99
Period size: 32 Copynumber: 4.7 Consensus size: 32
38653908 TTCAAAATAA
38653918 TTATAAATATTGTTTTAATATCTATATAAATT
1 TTATAAATATTGTTTTAATATCTATATAAATT
* * * * * *
38653950 TTCT-AA-A-T-TTATAAGGTTTCTATATTAGTA
1 TTATAAATATTGTTTTAA--TATCTATATAAATT
* * *
38653980 TTA-AATTTATTAGTATTAA-ATTTATA-AAATT
1 TTATAA-ATATT-GTTTTAATATCTATATAAATT
* * *
38654011 TTATAAATATTGTTTTAATATCTATATTAGTA
1 TTATAAATATTGTTTTAATATCTATATAAATT
38654043 TTATAAATATTGTTTTAATAT
1 TTATAAATATTGTTTTAATAT
38654064 AACCTATAAA
Statistics
Matches: 82, Mismatches: 21, Indels: 22
0.66 0.17 0.18
Matches are distributed among these distances:
28 5 0.06
29 1 0.01
30 20 0.24
31 17 0.21
32 34 0.41
33 1 0.01
35 4 0.05
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (32 bp):
TTATAAATATTGTTTTAATATCTATATAAATT
Found at i:38653992 original size:15 final size:15
Alignment explanation
Indices: 38653972--38654004 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
38653962 AAGGTTTCTA
38653972 TATTAGTATTAAATT
1 TATTAGTATTAAATT
38653987 TATTAGTATTAAATT
1 TATTAGTATTAAATT
38654002 TAT
1 TAT
38654005 AAAATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (15 bp):
TATTAGTATTAAATT
Found at i:38654205 original size:24 final size:26
Alignment explanation
Indices: 38654178--38654232 Score: 78
Period size: 24 Copynumber: 2.2 Consensus size: 26
38654168 TATATATCTT
*
38654178 ACATAATACATAAC-TACATAACAA-
1 ACATAATAAATAACTTACATAACAAC
*
38654202 ACATAATAAATAACTTACATAATAAC
1 ACATAATAAATAACTTACATAACAAC
38654228 ACATA
1 ACATA
38654233 CCGTACATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 13 0.48
25 9 0.33
26 5 0.19
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (26 bp):
ACATAATAAATAACTTACATAACAAC
Found at i:38654354 original size:9 final size:9
Alignment explanation
Indices: 38654322--38654538 Score: 131
Period size: 9 Copynumber: 25.8 Consensus size: 9
38654312 TAGTGAATAA
38654322 TACAT-ACT
1 TACATAACT
*
38654330 TACATAAAT
1 TACATAACT
* *
38654339 TAAATAAGT
1 TACATAACT
38654348 TACATAA--
1 TACATAACT
* *
38654355 TACACAAAT
1 TACATAACT
38654364 TACATAACT
1 TACATAACT
38654373 TACATAA--
1 TACATAACT
*
38654380 TACATAATT
1 TACATAACT
38654389 TACATAA--
1 TACATAACT
* *
38654396 TACACACCT
1 TACATAACT
*
38654405 GACATAACT
1 TACATAACT
38654414 TACATAA--
1 TACATAACT
**
38654421 TACATATTT
1 TACATAACT
*
38654430 TACATCACT
1 TACATAACT
38654439 TACATAA--
1 TACATAACT
*
38654446 GACATAACT
1 TACATAACT
38654455 TACATAA--
1 TACATAACT
*
38654462 TACACAACT
1 TACATAACT
*
38654471 TACATAAGT
1 TACATAACT
*
38654480 TTCATAA--
1 TACATAACT
*
38654487 TACACAACT
1 TACATAACT
* *
38654496 TACACAGCT
1 TACATAACT
38654505 TACATAACT
1 TACATAACT
* *
38654514 TACACAAGT
1 TACATAACT
38654523 TACATAACT
1 TACATAACT
*
38654532 TAGATAA
1 TACATAA
38654539 TAAATAACTT
Statistics
Matches: 160, Mismatches: 34, Indels: 29
0.72 0.15 0.13
Matches are distributed among these distances:
7 41 0.26
8 5 0.03
9 114 0.71
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (9 bp):
TACATAACT
Found at i:38654383 original size:16 final size:16
Alignment explanation
Indices: 38654364--38654477 Score: 106
Period size: 16 Copynumber: 7.0 Consensus size: 16
38654354 ATACACAAAT
38654364 TACATAACTTACATAA
1 TACATAACTTACATAA
*
38654380 TACATAATTTACATAA
1 TACATAACTTACATAA
* * *
38654396 TACACACCTGACATAA
1 TACATAACTTACATAA
*
38654412 CTTACATAA--TACATATTT
1 --TACATAACTTACATA--A
*
38654430 TACATCACTTACATAA
1 TACATAACTTACATAA
*
38654446 GACATAACTTACATAA
1 TACATAACTTACATAA
*
38654462 TACACAACTTACATAA
1 TACATAACTTACATAA
38654478 GTTTCATAAT
Statistics
Matches: 77, Mismatches: 15, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
16 66 0.86
18 11 0.14
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:38654397 original size:41 final size:41
Alignment explanation
Indices: 38654323--38654477 Score: 163
Period size: 41 Copynumber: 3.8 Consensus size: 41
38654313 AGTGAATAAT
* * *
38654323 ACAT-ACTTACATAAATTAAATAAGTTACATAATACACAAATT
1 ACATAACTTACAT-AA-TACATAATTTACATAATACACAAATG
**
38654365 ACATAACTTACATAATACATAATTTACATAATACACACCTG
1 ACATAACTTACATAATACATAATTTACATAATACACAAATG
* * *
38654406 ACATAACTTACATAATACATATTTTACATCACTTACA-TAA-G
1 ACATAACTTACATAATACATAATTTACAT-A-ATACACAAATG
* *
38654447 ACATAACTTACATAATACACAACTTACATAA
1 ACATAACTTACATAATACATAATTTACATAA
38654478 GTTTCATAAT
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
40 1 0.01
41 76 0.79
42 7 0.07
43 12 0.12
ACGTcount: A:0.48, C:0.19, G:0.02, T:0.30
Consensus pattern (41 bp):
ACATAACTTACATAATACATAATTTACATAATACACAAATG
Found at i:38654434 original size:25 final size:25
Alignment explanation
Indices: 38654318--38654538 Score: 109
Period size: 25 Copynumber: 8.8 Consensus size: 25
38654308 AAATTAGTGA
* *
38654318 ATAATACAT-ACTTACATAAATTAA
1 ATAATACATAACTTACATAACTTAC
* *
38654342 ATAAGTTACATAA--TACACAAATTAC
1 ATAA--TACATAACTTACATAACTTAC
*
38654367 ATAACTTACATAA--TACATAATTTAC
1 ATAA--TACATAACTTACATAACTTAC
* * *
38654392 ATAATACACACCTGACATAACTTAC
1 ATAATACATAACTTACATAACTTAC
** *
38654417 ATAATACATATTTTACATCACTTAC
1 ATAATACATAACTTACATAACTTAC
*
38654442 ATAAGACATAACTTACATAA--TAC
1 ATAATACATAACTTACATAACTTAC
* * *
38654465 ACAACTTACATAAGTTTCATAA--TAC
1 ATAA--TACATAACTTACATAACTTAC
* * *
38654490 ACAACTTACACAGCTTACATAACTTAC
1 ATAA--TACATAACTTACATAACTTAC
* *
38654517 ACAAGTTACATAACTTAGATAA
1 ATAA--TACATAACTTACATAA
38654539 TAAATAACTT
Statistics
Matches: 158, Mismatches: 30, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
23 11 0.07
24 4 0.03
25 116 0.73
26 5 0.03
27 22 0.14
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.30
Consensus pattern (25 bp):
ATAATACATAACTTACATAACTTAC
Found at i:38654486 original size:41 final size:40
Alignment explanation
Indices: 38654365--38654499 Score: 146
Period size: 41 Copynumber: 3.3 Consensus size: 40
38654355 TACACAAATT
* *
38654365 ACATAACTTACATAATACATAATTTACATAA-TACACACCTG
1 ACATAACTTACATAATACATAATTTACATAATTACATA--AG
* *
38654406 ACATAACTTACATAATACATATTTTACATCACTTACATAAG
1 ACATAACTTACATAATACATAATTTACAT-AATTACATAAG
* * * *
38654447 ACATAACTTACATAATACACAACTTACATAAGTTTCATAAT
1 ACATAACTTACATAATACATAATTTACATAA-TTACATAAG
*
38654488 ACACAACTTACA
1 ACATAACTTACA
38654500 CAGCTTACAT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
40 1 0.01
41 73 0.91
42 1 0.01
43 5 0.06
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.30
Consensus pattern (40 bp):
ACATAACTTACATAATACATAATTTACATAATTACATAAG
Found at i:38656401 original size:42 final size:41
Alignment explanation
Indices: 38656307--38656468 Score: 215
Period size: 42 Copynumber: 3.9 Consensus size: 41
38656297 TGTGAAATAG
*
38656307 GCGCCGCTAAAGAACACT-A-CTATTAGCGGCATTTTTGAGC-AA
1 GCGCCGCTAAAGAACA-TGATCT-TTAGCGGCATTTTT--TCTAA
*
38656349 GCGCCACTAAAGAACATGATCTTTAGCGGCGATTTTTTCTAA
1 GCGCCGCTAAAGAACATGATCTTTAGCGGC-ATTTTTTCTAA
*
38656391 GAGCCGCTAAAGAACATGATCTTTAGCGG-AGTTTTTTCTAA
1 GCGCCGCTAAAGAACATGATCTTTAGCGGCA-TTTTTTCTAA
38656432 GCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTT
1 GCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTT
38656469 TATGTAAGCA
Statistics
Matches: 109, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
40 1 0.01
41 46 0.42
42 54 0.50
43 8 0.07
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (41 bp):
GCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTCTAA
Found at i:38656438 original size:41 final size:41
Alignment explanation
Indices: 38656347--38656469 Score: 192
Period size: 41 Copynumber: 3.0 Consensus size: 41
38656337 ATTTTTGAGC
* *
38656347 AAGCGCCACTAAAGAACATGATCTTTAGCGGCGATTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGAG-TTTTTTCT
*
38656389 AAGAGCCGCTAAAGAACATGATCTTTAGCGGAGTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGAGTTTTTTCT
*
38656430 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGG-AGTTTTTT
38656470 ATGTAAGCAC
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
41 38 0.51
42 37 0.49
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (41 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGAGTTTTTTCT
Found at i:38656590 original size:22 final size:22
Alignment explanation
Indices: 38656559--38656601 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
38656549 TAGTGGAGTT
* *
38656559 AAAAAGCGCCGCTAAAGACCTA
1 AAAAAACGCCGCTAAAAACCTA
38656581 AAAAAACGCCGCTAAAAACCT
1 AAAAAACGCCGCTAAAAACCT
38656602 GTTTTGCTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.28, G:0.14, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAACCTA
Found at i:38660896 original size:138 final size:138
Alignment explanation
Indices: 38660648--38660925 Score: 556
Period size: 138 Copynumber: 2.0 Consensus size: 138
38660638 TATACTTTAT
38660648 AAGTATTTGGTGATAATATGTGTATTCTTCGATTCTCCTTAGAAATACAATCATTCTTCTTTATA
1 AAGTATTTGGTGATAATATGTGTATTCTTCGATTCTCCTTAGAAATACAATCATTCTTCTTTATA
38660713 ACAACCAAAATTATTATAGGTATTTTAATAAATGATATTAATTATCAATAAAATTTTATAGGTAT
66 ACAACCAAAATTATTATAGGTATTTTAATAAATGATATTAATTATCAATAAAATTTTATAGGTAT
38660778 TTGAATAA
131 TTGAATAA
38660786 AAGTATTTGGTGATAATATGTGTATTCTTCGATTCTCCTTAGAAATACAATCATTCTTCTTTATA
1 AAGTATTTGGTGATAATATGTGTATTCTTCGATTCTCCTTAGAAATACAATCATTCTTCTTTATA
38660851 ACAACCAAAATTATTATAGGTATTTTAATAAATGATATTAATTATCAATAAAATTTTATAGGTAT
66 ACAACCAAAATTATTATAGGTATTTTAATAAATGATATTAATTATCAATAAAATTTTATAGGTAT
38660916 TTGAATAA
131 TTGAATAA
38660924 AA
1 AA
38660926 TGTTATAGGT
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 140 1.00
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (138 bp):
AAGTATTTGGTGATAATATGTGTATTCTTCGATTCTCCTTAGAAATACAATCATTCTTCTTTATA
ACAACCAAAATTATTATAGGTATTTTAATAAATGATATTAATTATCAATAAAATTTTATAGGTAT
TTGAATAA
Found at i:38660922 original size:22 final size:22
Alignment explanation
Indices: 38660895--38660949 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
38660885 ATATTAATTA
*
38660895 TCAATAAAATTTTATAGGTATT
1 TCAATAAAATTTTATAGGTAGT
* *
38660917 TGAATAAAATGTTATAGGTAGT
1 TCAATAAAATTTTATAGGTAGT
38660939 TCAATAAAATT
1 TCAATAAAATT
38660950 AATCATGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.44, C:0.04, G:0.13, T:0.40
Consensus pattern (22 bp):
TCAATAAAATTTTATAGGTAGT
Found at i:38662343 original size:20 final size:21
Alignment explanation
Indices: 38662298--38662357 Score: 77
Period size: 20 Copynumber: 2.8 Consensus size: 21
38662288 AAAATTAGGA
38662298 AAAACTTTTACCAAAATATTTCT
1 AAAAC-TTTACCAAAATA-TTCT
*
38662321 AAAACTTTACTAAAATA-TCT
1 AAAACTTTACCAAAATATTCT
*
38662341 AAAAATTTACCAAAATA
1 AAAACTTTACCAAAATA
38662358 AATCCTTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.53
22 11 0.32
23 5 0.15
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAACTTTACCAAAATATTCT
Found at i:38677587 original size:41 final size:41
Alignment explanation
Indices: 38677491--38677588 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 41
38677481 AATCACAATG
* * *
38677491 CTCACACGAGCTGTCGGTCGAAACGTAGCTACACGATACTG
1 CTCACACGAGCTGTGGGTCGAAACATAGCTACACGATACTA
* * * *
38677532 CTCACACAAGCTGTGGGTTGAAACATAGCTACACTATGCTA
1 CTCACACGAGCTGTGGGTCGAAACATAGCTACACGATACTA
38677573 CTCACACGAGCTGTGG
1 CTCACACGAGCTGTGG
38677589 AGTATCCGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
CTCACACGAGCTGTGGGTCGAAACATAGCTACACGATACTA
Found at i:38682711 original size:18 final size:17
Alignment explanation
Indices: 38682669--38682712 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
38682659 TAGAAACTTA
38682669 TAAGTTTAGAAAAAGGAC
1 TAAGTTT-GAAAAAGGAC
*
38682687 TAA-TTTGTAAAAAGGTC
1 TAAGTTTG-AAAAAGGAC
38682704 TAAGTTTGA
1 TAAGTTTGA
38682713 GTCTTTATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 1 0.04
17 15 0.65
18 7 0.30
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (17 bp):
TAAGTTTGAAAAAGGAC
Found at i:38687639 original size:50 final size:51
Alignment explanation
Indices: 38687531--38687767 Score: 207
Period size: 50 Copynumber: 4.6 Consensus size: 51
38687521 ATGCCAAATT
* * * **
38687531 CATGTCCCAGACATGGTCTTACATGAGATG-TTTC-T-TGTACTGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGA-GCTCTCATATATGGTGCCAATGC
* * * *
38687580 CATATCCCAGATATGGTCTTACATGGGAGTTCTCATAT-TGGTGCCCATGC
1 CATGTCCCAGACATGGTCTTACATGGGAGCTCTCATATATGGTGCCAATGC
** * * * *
38687630 CATGTCCCAGACATGGTCTTACGGGGGAACTCTCATCT-CGGTGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGAGCTCTCATATATGGTGCCAATGC
* * *
38687680 TATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATG-CAATGC
1 CATGTCCCAGACATGGTCTTACATGGGAGCTCTCAT-A--T--ATGGTGCCAATGC
*
38687735 CATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CATGTCCCAGACATGGTCTTACATGGGAGCTCT
38687768 TTCCCCAAAT
Statistics
Matches: 152, Mismatches: 27, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
48 1 0.01
49 28 0.18
50 82 0.54
51 1 0.01
53 1 0.01
55 36 0.24
56 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.29
Consensus pattern (51 bp):
CATGTCCCAGACATGGTCTTACATGGGAGCTCTCATATATGGTGCCAATGC
Found at i:38694917 original size:21 final size:20
Alignment explanation
Indices: 38694893--38694960 Score: 86
Period size: 21 Copynumber: 3.4 Consensus size: 20
38694883 GTTGTTGAGA
38694893 AGGAAGTTGATGTTGCAGAAG
1 AGGAAGTTG-TGTTGCAGAAG
38694914 AGGAAG-T-TGTTGCAGAAG
1 AGGAAGTTGTGTTGCAGAAG
* *
38694932 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGTTG-TGTTGCAGAAG
38694953 AGGAAGTT
1 AGGAAGTT
38694961 ATTGAAAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 17 0.40
19 1 0.02
20 1 0.02
21 23 0.55
ACGTcount: A:0.34, C:0.04, G:0.38, T:0.24
Consensus pattern (20 bp):
AGGAAGTTGTGTTGCAGAAG
Found at i:38694924 original size:18 final size:18
Alignment explanation
Indices: 38694903--38694960 Score: 89
Period size: 18 Copynumber: 3.1 Consensus size: 18
38694893 AGGAAGTTGA
38694903 TGTTGCAGAAGAGGAAGT
1 TGTTGCAGAAGAGGAAGT
38694921 TGTTGCAGAAGAGGAAGT
1 TGTTGCAGAAGAGGAAGT
38694939 TGTTGCTGAAGAAGAGGAAGT
1 TGTTGC---AGAAGAGGAAGT
38694960 T
1 T
38694961 ATTGAAAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
18 24 0.65
21 13 0.35
ACGTcount: A:0.33, C:0.05, G:0.38, T:0.24
Consensus pattern (18 bp):
TGTTGCAGAAGAGGAAGT
Found at i:38694966 original size:18 final size:18
Alignment explanation
Indices: 38694909--38694966 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
38694899 TTGATGTTGC
* *
38694909 AGAAGAGGAAGTTGTTGC
1 AGAAGAGGAAGTTATTGA
*
38694927 AGAAGAGGAAGTTGTTGCTGA
1 AGAAGAGGAAGTT-AT--TGA
38694948 AGAAGAGGAAGTTATTGA
1 AGAAGAGGAAGTTATTGA
38694966 A
1 A
38694967 AATGAGAAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 17 0.50
19 1 0.03
20 1 0.03
21 15 0.44
ACGTcount: A:0.38, C:0.03, G:0.36, T:0.22
Consensus pattern (18 bp):
AGAAGAGGAAGTTATTGA
Found at i:38698374 original size:67 final size:67
Alignment explanation
Indices: 38698296--38698444 Score: 217
Period size: 67 Copynumber: 2.2 Consensus size: 67
38698286 GCTCAAGTGC
* * *
38698296 CAAATTATCTTAAATTATGAGTTTGTGTGTATTATGATATGTGTTTATATGACACGCGACCATTA
1 CAAATTATCTTAAATTATGAATATGTGTGTATTATGATATGTGTTTATATGACACGCGACCACTA
38698361 TG
66 TG
* * * *
38698363 CAAATTATCTTAACTTATGAATATGTGTGTATTATGATATGTGTTTTTATGACATGTGACCACTA
1 CAAATTATCTTAAATTATGAATATGTGTGTATTATGATATGTGTTTATATGACACGCGACCACTA
38698428 TG
66 TG
*
38698430 CAATTTATCTATAAA
1 CAAATTATCT-TAAA
38698445 ATGTTTTAGA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
67 69 0.96
68 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (67 bp):
CAAATTATCTTAAATTATGAATATGTGTGTATTATGATATGTGTTTATATGACACGCGACCACTA
TG
Found at i:38698414 original size:15 final size:16
Alignment explanation
Indices: 38698377--38698420 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
38698367 TTATCTTAAC
38698377 TTATGAATATGTGTGTA
1 TTATG-ATATGTGTGTA
*
38698394 TTATGATATGTGT-TT
1 TTATGATATGTGTGTA
*
38698409 TTATGACATGTG
1 TTATGATATGTG
38698421 ACCACTATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 8 0.32
17 5 0.20
ACGTcount: A:0.25, C:0.02, G:0.23, T:0.50
Consensus pattern (16 bp):
TTATGATATGTGTGTA
Found at i:38698508 original size:39 final size:38
Alignment explanation
Indices: 38698448--38698550 Score: 98
Period size: 39 Copynumber: 2.7 Consensus size: 38
38698438 CTATAAAATG
** * * * *
38698448 TTTTAGAGTATTGTGGTATATGTTTGAATGTTATGTGA
1 TTTTAGAGTATTGTGACATATGCTTAAACGTTATGAGA
38698486 TTTTACGAGTATTGTGACATATGCTTAAACGTTATGAGA
1 TTTTA-GAGTATTGTGACATATGCTTAAACGTTATGAGA
* ** *
38698525 TTATATGAGTACGGTGATATATGCTT
1 TTTTA-GAGTATTGTGACATATGCTT
38698551 TTATGTTAGA
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
38 5 0.09
39 48 0.91
ACGTcount: A:0.27, C:0.06, G:0.23, T:0.44
Consensus pattern (38 bp):
TTTTAGAGTATTGTGACATATGCTTAAACGTTATGAGA
Found at i:38699698 original size:17 final size:18
Alignment explanation
Indices: 38699666--38699701 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
38699656 AGGGTGTTAC
*
38699666 ATTTAGGTTGTGTTAATT
1 ATTTAGGTTGTATTAATT
38699684 ATTTA-GTTGTATTAATT
1 ATTTAGGTTGTATTAATT
38699701 A
1 A
38699702 ATTAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.56
Consensus pattern (18 bp):
ATTTAGGTTGTATTAATT
Found at i:38704502 original size:22 final size:22
Alignment explanation
Indices: 38704476--38704524 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
38704466 TCAAAACATC
*
38704476 TAATACTTATACATATTACCAA
1 TAATAATTATACATATTACCAA
* *
38704498 TAATAATTCTACCTATTACCAA
1 TAATAATTATACATATTACCAA
38704520 TAATA
1 TAATA
38704525 GTTCATTACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (22 bp):
TAATAATTATACATATTACCAA
Found at i:38708219 original size:51 final size:50
Alignment explanation
Indices: 38708143--38708282 Score: 167
Period size: 50 Copynumber: 2.8 Consensus size: 50
38708133 GTACTCAATT
* * *
38708143 CACATAGCAGCCTGCACATTGTACTACACATGTGACCATTTCCA-TCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCA-TT-CATTCCGATA
*
38708194 CACATAGTAGCCTGCACATAGTACTACACATGCGACCCA-TCATTCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA-CCATTCATTCCGATA
* * * *
38708244 CACGTTGTAGCCTGCACATAGTACTACATACGTGACCAT
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCAT
38708283 CACTTTCACT
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
49 5 0.06
50 37 0.48
51 32 0.42
52 3 0.04
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTCATTCCGATA
Found at i:38711736 original size:28 final size:28
Alignment explanation
Indices: 38711704--38711790 Score: 122
Period size: 28 Copynumber: 3.1 Consensus size: 28
38711694 GAGAAAAACG
*
38711704 TATGAAAATTGAAGCCTTTGTGGAAATC
1 TATGAAAATTGAAGCCTTTGTGGCAATC
*
38711732 TATGAAAATGGAAGCCTTT-TGGCAATC
1 TATGAAAATTGAAGCCTTTGTGGCAATC
* * *
38711759 TATGAAAATTGAAGTCTTCGTGGCGATC
1 TATGAAAATTGAAGCCTTTGTGGCAATC
38711787 TATG
1 TATG
38711791 GAATGGGACG
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.44
28 29 0.56
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (28 bp):
TATGAAAATTGAAGCCTTTGTGGCAATC
Found at i:38718139 original size:28 final size:28
Alignment explanation
Indices: 38718060--38718167 Score: 139
Period size: 28 Copynumber: 3.9 Consensus size: 28
38718050 CGTGAAAAAG
* * *
38718060 TATGAAAATGGAAGTCTTTGGGGCAATA
1 TATGAAAATGGAAGCCTTTGTGGCAATC
38718088 TATGAAAATGGAAGCCTTTGTGGCAATC
1 TATGAAAATGGAAGCCTTTGTGGCAATC
38718116 TATGAAAATGGAAGCCTTCT-TGGCAATC
1 TATGAAAATGGAAGCCTT-TGTGGCAATC
* *
38718144 TATGGAAAT-GAATGCCTTCGTGGC
1 TATGAAAATGGAA-GCCTTTGTGGC
38718168 GCACTCCAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
27 3 0.04
28 68 0.94
29 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
TATGAAAATGGAAGCCTTTGTGGCAATC
Found at i:38719916 original size:22 final size:21
Alignment explanation
Indices: 38719873--38719917 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 21
38719863 CAATAGAATT
38719873 TTAAATACATATTAACATATAA
1 TTAAATACATA-TAACATATAA
38719895 TTAAATAACATA-AACATAATAA
1 TTAAAT-ACATATAACAT-ATAA
38719917 T
1 T
38719918 CCGTACATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.24
22 11 0.52
23 5 0.24
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (21 bp):
TTAAATACATATAACATATAA
Found at i:38720043 original size:19 final size:19
Alignment explanation
Indices: 38720019--38720059 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
38720009 GTCTATCTTG
38720019 ATCTAAATAGAAAAATTCA
1 ATCTAAATAGAAAAATTCA
38720038 ATCTAAATAGAAAAATTCA
1 ATCTAAATAGAAAAATTCA
38720057 ATC
1 ATC
38720060 CATTTAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (19 bp):
ATCTAAATAGAAAAATTCA
Found at i:38725618 original size:29 final size:29
Alignment explanation
Indices: 38725586--38725645 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
38725576 AAACAAAAGT
*
38725586 TTGCCTCAGACATTTTCAAAATTCCATGC
1 TTGCCTCAAACATTTTCAAAATTCCATGC
*
38725615 TTGCCTCAAACATTTTCAAAATTTCATGC
1 TTGCCTCAAACATTTTCAAAATTCCATGC
38725644 TT
1 TT
38725646 CCTAGGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (29 bp):
TTGCCTCAAACATTTTCAAAATTCCATGC
Found at i:38728329 original size:16 final size:15
Alignment explanation
Indices: 38728304--38728337 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
38728294 AAAGTTGATA
*
38728304 ATAATTAATATACATT
1 ATAATAAATATA-ATT
38728320 ATAATAAATATAATT
1 ATAATAAATATAATT
38728335 ATA
1 ATA
38728338 TATTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:38730580 original size:25 final size:25
Alignment explanation
Indices: 38730511--38730580 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
38730501 CTGTACATGT
* * *
38730511 ATGCTCTCACGAGCTGTAAATCAGA
1 ATGCTCACACGAGCTGTGAATCAAA
* *
38730536 ATGCTCACATGAGCTATGAATCAAA
1 ATGCTCACACGAGCTGTGAATCAAA
*
38730561 ATGCTCACACAAGCTGTGAA
1 ATGCTCACACGAGCTGTGAA
38730581 AATGGGCCTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.23
Consensus pattern (25 bp):
ATGCTCACACGAGCTGTGAATCAAA
Found at i:38731708 original size:12 final size:12
Alignment explanation
Indices: 38731691--38731720 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
38731681 ACCTACACGT
38731691 CCATGTGCCAGG
1 CCATGTGCCAGG
*
38731703 CCATGTGCTAGG
1 CCATGTGCCAGG
38731715 CCATGT
1 CCATGT
38731721 AACAGCCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (12 bp):
CCATGTGCCAGG
Found at i:38737091 original size:20 final size:21
Alignment explanation
Indices: 38737051--38737091 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
38737041 GGACTAAATC
38737051 GAAAACATATAGAATTTTTCA
1 GAAAACATATAGAATTTTTCA
38737072 GAAAACA-AT-GAATATTTTCA
1 GAAAACATATAGAAT-TTTTCA
38737092 AACTACAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 8 0.42
21 7 0.37
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.32
Consensus pattern (21 bp):
GAAAACATATAGAATTTTTCA
Found at i:38738511 original size:21 final size:20
Alignment explanation
Indices: 38738475--38738516 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
38738465 CTAAATATGC
38738475 GTCTGTTTGTTAGAACATTTT
1 GTCTGTTTGTTAGAAC-TTTT
38738496 GTCTGTTTGTGT-GAACTTTT
1 GTCTGTTTGT-TAGAACTTTT
38738516 G
1 G
38738517 GTTATTGACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 14 0.70
22 1 0.05
ACGTcount: A:0.14, C:0.10, G:0.24, T:0.52
Consensus pattern (20 bp):
GTCTGTTTGTTAGAACTTTT
Found at i:38738903 original size:32 final size:32
Alignment explanation
Indices: 38738867--38738932 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
38738857 TTAAGTCGGT
*
38738867 TTGTAAAATGATTATATAAATTGCGGTACAAG
1 TTGTAAAATGATTATATAAACTGCGGTACAAG
* *
38738899 TTGTACAATGATTATATAAACTGTGGTACAAG
1 TTGTAAAATGATTATATAAACTGCGGTACAAG
38738931 TT
1 TT
38738933 TTTATGGTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (32 bp):
TTGTAAAATGATTATATAAACTGCGGTACAAG
Found at i:38741789 original size:21 final size:22
Alignment explanation
Indices: 38741760--38741810 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
38741750 TCTCTCTCGC
*
38741760 TTTCCTTTTCACCTTTTTCA-T
1 TTTCATTTTCACCTTTTTCACT
**
38741781 TTTCATTTTCTTCTTTTTCACT
1 TTTCATTTTCACCTTTTTCACT
38741803 TTT-ATTTT
1 TTTCATTTT
38741811 TCTCTTCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.10, C:0.22, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCATTTTCACCTTTTTCACT
Found at i:38745375 original size:40 final size:41
Alignment explanation
Indices: 38745320--38745399 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 41
38745310 AAGCGCTTTG
*
38745320 TCCACGTGGACACAAAGTAC-GCCTTCAAGGAAGCGTTTTCTA
1 TCCACGTGGA-ACAAAGTACTGCCTT-AAGGAAGCATTTTCTA
* *
38745362 TCCACGTGG-ACAAAGTGCTTCCTTAAGGAAGCATTTTC
1 TCCACGTGGAACAAAGTACTGCCTTAAGGAAGCATTTTC
38745400 CTGCTTTATC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 21 0.62
41 4 0.12
42 9 0.26
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (41 bp):
TCCACGTGGAACAAAGTACTGCCTTAAGGAAGCATTTTCTA
Found at i:38752712 original size:26 final size:26
Alignment explanation
Indices: 38752683--38752789 Score: 115
Period size: 26 Copynumber: 4.1 Consensus size: 26
38752673 TGAAGGAATT
* *
38752683 ATACTGTTACTAGCAGCTTTGCGGCG
1 ATACTATTACTAGCAGCTTTGCTGCG
** * *
38752709 ATACTGGTACTGGTAGCTTTGCTGCG
1 ATACTATTACTAGCAGCTTTGCTGCG
* * *
38752735 ATACTATTACTAGCAGTTTTACTACG
1 ATACTATTACTAGCAGCTTTGCTGCG
* *
38752761 ATACTATTATTGGCAGCTTTGCTGCG
1 ATACTATTACTAGCAGCTTTGCTGCG
38752787 ATA
1 ATA
38752790 TTGGTGTGTT
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 65 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (26 bp):
ATACTATTACTAGCAGCTTTGCTGCG
Found at i:38752763 original size:52 final size:52
Alignment explanation
Indices: 38752683--38752789 Score: 133
Period size: 52 Copynumber: 2.1 Consensus size: 52
38752673 TGAAGGAATT
* * * * *
38752683 ATACTGTTACTAGCAGCTTTGCGGCGATACTGGTACTGGTAGCTTTGCTGCG
1 ATACTATTACTAGCAGCTTTACGACGATACTAGTACTGGCAGCTTTGCTGCG
* * * *
38752735 ATACTATTACTAGCAGTTTTACTACGATACTATTATTGGCAGCTTTGCTGCG
1 ATACTATTACTAGCAGCTTTACGACGATACTAGTACTGGCAGCTTTGCTGCG
38752787 ATA
1 ATA
38752790 TTGGTGTGTT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (52 bp):
ATACTATTACTAGCAGCTTTACGACGATACTAGTACTGGCAGCTTTGCTGCG
Found at i:38754088 original size:51 final size:50
Alignment explanation
Indices: 38753918--38754101 Score: 190
Period size: 50 Copynumber: 3.7 Consensus size: 50
38753908 AGTTGCTAGG
* * * ** * * *
38753918 TCACGTGTGTAGTTCTATGTGCAGGCTACTGCGTGTACCGGAATGATAGG
1 TCACATGTGTAGTACTATGTGTAGGCTACTATGCGTACCAGAATGATAGA
* * * * *
38753968 TCGCATGTGTAGTATTATGTGCAGGCTACTACGTGTACCAGAATGATAGA
1 TCACATGTGTAGTACTATGTGTAGGCTACTATGCGTACCAGAATGATAGA
* * * *
38754018 TCTCATGTGTAGTACTATGTGTAGGCTACTATGCGTACC-GGATAGCTTCGA
1 TCACATGTGTAGTACTATGTGTAGGCTACTATGCGTACCAGAAT-G-ATAGA
38754069 TCACATGTGTAGTACTATGTGTAGGCTACTATG
1 TCACATGTGTAGTACTATGTGTAGGCTACTATG
38754102 TGAATCGGTA
Statistics
Matches: 116, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
49 3 0.03
50 78 0.67
51 35 0.30
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGTAGGCTACTATGCGTACCAGAATGATAGA
Found at i:38756665 original size:26 final size:26
Alignment explanation
Indices: 38756636--38756688 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
38756626 ATGTGATAAT
*
38756636 GTGATTCCATGTAAGACCATAGCTGG
1 GTGATTACATGTAAGACCATAGCTGG
* *
38756662 GTGATTACGTGTATGACCATAGCTGG
1 GTGATTACATGTAAGACCATAGCTGG
38756688 G
1 G
38756689 CTATGACATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
GTGATTACATGTAAGACCATAGCTGG
Found at i:38759949 original size:50 final size:51
Alignment explanation
Indices: 38759869--38760004 Score: 177
Period size: 50 Copynumber: 2.7 Consensus size: 51
38759859 GTGAAGTCGC
* * *
38759869 TAGGTCACGTGTGTAGTACTATGTGGAGGCTACTACGTGTACCGGA-ATG-A
1 TAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGATA-GCA
* * *
38759919 TAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT
1 TAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGATAGCA
* *
38759970 TCGATCACATGTGTAGTACTATGTGCAGGCTACTA
1 TAGGTCACATGTGTAGTACTATGTGCAGGCTACTA
38760005 TGTCAACCGG
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
50 42 0.56
51 33 0.44
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (51 bp):
TAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACCGGATAGCA
Found at i:38760014 original size:51 final size:50
Alignment explanation
Indices: 38759873--38760014 Score: 162
Period size: 51 Copynumber: 2.8 Consensus size: 50
38759863 AGTCGCTAGG
* * * * *
38759873 TCACGTGTGTAGTACTATGTGGAGGCTACTACGTGTACCGGAATGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTCTACCGGAATGATAGA
* * *
38759923 TCGCATGTGTAGTACTATGTGCAGGCTACTATG-CGTACCGG-ATAGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTC-TACCGGAAT-G-ATAGA
*
38759974 TCACATGTGTAGTACTATGTGCAGGCTACTATGTCAACCGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGTCTACCGG
38760015 TTTCATTAAT
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
49 2 0.03
50 36 0.46
51 39 0.50
52 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGTCTACCGGAATGATAGA
Found at i:38780254 original size:29 final size:31
Alignment explanation
Indices: 38780188--38780247 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
38780178 GATATCAGTC
*
38780188 ATGCAGTGAACAGTATGTAATATCATTAATCG
1 ATGCAGTGAACAGTA-GTAAAATCATTAATCG
*
38780220 ATGCAGT-AACAGTA-TAAAATCCTTAATC
1 ATGCAGTGAACAGTAGTAAAATCATTAATC
38780248 AGTGCAGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 12 0.46
31 7 0.27
32 7 0.27
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (31 bp):
ATGCAGTGAACAGTAGTAAAATCATTAATCG
Found at i:38780696 original size:27 final size:26
Alignment explanation
Indices: 38780651--38780733 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
38780641 TATAACAATT
* *
38780651 ATTTTACCCTATGGGGGTATTTCAGTC
1 ATTTTACCCTAT-GAGGTATTTCGGTC
*
38780678 ATTTTACCCTATAGAGGTATTTTGGTC
1 ATTTTACCCTAT-GAGGTATTTCGGTC
38780705 ATTTTACCCTATGAGGGTATTTCGGTC
1 ATTTTACCCTATGA-GGTATTTCGGTC
38780732 AT
1 AT
38780734 AATACTGTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTATGAGGTATTTCGGTC
Found at i:38787193 original size:40 final size:40
Alignment explanation
Indices: 38787149--38787332 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
38787139 AAATCACACC
* *
38787149 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
38787189 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
38787229 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
38787269 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
38787309 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
38787333 CAGCATTCAA
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.91
41 8 0.06
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:38794795 original size:40 final size:40
Alignment explanation
Indices: 38794618--38794841 Score: 229
Period size: 40 Copynumber: 5.6 Consensus size: 40
38794608 TCCTCGTTCA
* * * * *
38794618 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
38794657 AATGCCTTACGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTT-CGGGACTTAACCCGGATTTAATAACTCGCACG
*
38794698 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
38794738 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
38794778 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
38794818 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
38794842 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
39 11 0.07
40 132 0.84
41 15 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:38807392 original size:9 final size:9
Alignment explanation
Indices: 38807366--38807398 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
38807356 AGAAGTTATC
38807366 GATCAGAAT
1 GATCAGAAT
38807375 GATTCAGAAT
1 GA-TCAGAAT
38807385 GATCAGAAT
1 GATCAGAAT
38807394 G-TCAG
1 GATCAG
38807399 CTTTAGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 4 0.17
9 10 0.43
10 9 0.39
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (9 bp):
GATCAGAAT
Found at i:38808276 original size:9 final size:9
Alignment explanation
Indices: 38808250--38808282 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
38808240 AGAAGTTATC
38808250 GATCAGAAT
1 GATCAGAAT
38808259 GATTCAGAAT
1 GA-TCAGAAT
38808269 GATCAGAAT
1 GATCAGAAT
38808278 G-TCAG
1 GATCAG
38808283 CTTTAGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 4 0.17
9 10 0.43
10 9 0.39
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.24
Consensus pattern (9 bp):
GATCAGAAT
Found at i:38808495 original size:884 final size:884
Alignment explanation
Indices: 38806787--38809438 Score: 5277
Period size: 884 Copynumber: 3.0 Consensus size: 884
38806777 AAGCCTGTCC
38806787 ATTTGAAGCCTAACTGGCCCAATAATGCTTATATAAAAAGATAAGCTACCTTGGCAAATATGGGA
1 ATTTGAAGCCTAACTGGCCCAATAATGCTTATATAAAAAGATAAGCTACCTTGGCAAATATGGGA
38806852 GCTACTCTTAGAATATTGAGGGGAACCATATCTTATAAGATTAGATTAGATTTGATATTATAAAT
66 GCTACTCTTAGAATATTGAGGGGAACCATATCTTATAAGATTAGATTAGATTTGATATTATAAAT
38806917 CTTATAAATCCTTTAATTGTAGGGATAGACTAATCTCGTCCATCGATGTAAGTTGATCTAGATCA
131 CTTATAAATCCTTTAATTGTAGGGATAGACTAATCTCGTCCATCGATGTAAGTTGATCTAGATCA
38806982 TGGTTTTTGGGGGAGCTCAACTATAAATAGAGAGCCCCCTCCTCACTTGTAATGCATTCCATTCT
196 TGGTTTTTGGGGGAGCTCAACTATAAATAGAGAGCCCCCTCCTCACTTGTAATGCATTCCATTCT
38807047 TTATTGTTTCTTGTATTCTTTGATAGAAAGTAATACAATTAAGAGTATTTACTCAAACACCACTC
261 TTATTGTTTCTTGTATTCTTTGATAGAAAGTAATACAATTAAGAGTATTTACTCAAACACCACTC
38807112 GTGCTTAGTTTTTTGTGGCTACTATGTTCTTTTGAGCCTTCTTTTGGCTAAGTTGCTTCTACTAT
326 GTGCTTAGTTTTTTGTGGCTACTATGTTCTTTTGAGCCTTCTTTTGGCTAAGTTGCTTCTACTAT
38807177 ATAAATTGGTGCCTTGGAGGAATTCTTTGTGAATCATCATTTGTTTGGTGGTTAGACTGACTTAG
391 ATAAATTGGTGCCTTGGAGGAATTCTTTGTGAATCATCATTTGTTTGGTGGTTAGACTGACTTAG
38807242 GCATGTATGAATCGAAAGGATTGCCTAAGGCCGCACATTTTAAGAGACTAAATTTCTAGCCCATG
456 GCATGTATGAATCGAAAGGATTGCCTAAGGCCGCACATTTTAAGAGACTAAATTTCTAGCCCATG
*
38807307 AAAAGTGGTATAAGAGCTTTAGTCACGAAGGCACCATCGAGATGTCGAAAGAAGTTATCGATCAG
521 AAAAGTGGTATAAGAGCTTTGGTCACGAAGGCACCATCGAGATGTCGAAAGAAGTTATCGATCAG
38807372 AATGATTCAGAATGATCAGAATGTCAGCTTTAGAGGACCGAGTGGACAAACTCGAGGAGTCCAAA
586 AATGATTCAGAATGATCAGAATGTCAGCTTTAGAGGACCGAGTGGACAAACTCGAGGAGTCCAAA
38807437 GACTTTGTGATCATGTCTCTCAATTCCAATGTAGATAAGGTAAACGAGTTATTAAATTCACATAC
651 GACTTTGTGATCATGTCTCTCAATTCCAATGTAGATAAGGTAAACGAGTTATTAAATTCACATAC
38807502 GAATAAGTTGACAGAGAGGAATGATGCTCTTGAGGCCATGGTGATGGCTTTGAAGGAAGAAACAA
716 GAATAAGTTGACAGAGAGGAATGATGCTCTTGAGGCCATGGTGATGGCTTTGAAGGAAGAAACAA
38807567 TGGCCACAACAAAGGCTTTGAGCACAAGAATAGAGGAGCTTGAGGGAGAGCTTGCCTTGTGTCGA
781 TGGCCACAACAAAGGCTTTGAGCACAAGAATAGAGGAGCTTGAGGGAGAGCTTGCCTTGTGTCGA
38807632 GTAGCCATGAGGAATAGAGTGTCAAGTGCAGCACTCAAT
846 GTAGCCATGAGGAATAGAGTGTCAAGTGCAGCACTCAAT
38807671 ATTTGAAGCCTAACTGGCCCAATAATGCTTATATAAAAAGATAAGCTACCTTGGCAAATATGGGA
1 ATTTGAAGCCTAACTGGCCCAATAATGCTTATATAAAAAGATAAGCTACCTTGGCAAATATGGGA
38807736 GCTACTCTTAGAATATTGAGGGGAACCATATCTTATAAGATTAGATTAGATTTGATATTATAAAT
66 GCTACTCTTAGAATATTGAGGGGAACCATATCTTATAAGATTAGATTAGATTTGATATTATAAAT
38807801 CTTATAAATCCTTTAATTGTAGGGATAGACTAATCTCGTCCATCGATGTAAGTTGATCTAGATCA
131 CTTATAAATCCTTTAATTGTAGGGATAGACTAATCTCGTCCATCGATGTAAGTTGATCTAGATCA
38807866 TGGTTTTTGGGGGAGCTCAACTATAAATAGAGAGCCCCCTCCTCACTTGTAATGCATTCCATTCT
196 TGGTTTTTGGGGGAGCTCAACTATAAATAGAGAGCCCCCTCCTCACTTGTAATGCATTCCATTCT
38807931 TTATTGTTTCTTGTATTCTTTGATAGAAAGTAATACAATTAAGAGTATTTACTCAAACACCACTC
261 TTATTGTTTCTTGTATTCTTTGATAGAAAGTAATACAATTAAGAGTATTTACTCAAACACCACTC
38807996 GTGCTTAGTTTTTTGTGGCTACTATGTTCTTTTGAGCCTTCTTTTGGCTAAGTTGCTTCTACTAT
326 GTGCTTAGTTTTTTGTGGCTACTATGTTCTTTTGAGCCTTCTTTTGGCTAAGTTGCTTCTACTAT
38808061 ATAAATTGGTGCCTTGGAGGAATTCTTTGTGAATCATCATTTGTTTGGTGGTTAGACTGACTTAG
391 ATAAATTGGTGCCTTGGAGGAATTCTTTGTGAATCATCATTTGTTTGGTGGTTAGACTGACTTAG
38808126 GCATGTATGAATCGAAAGGATTGCCTAAGGCCGCACATTTTAAGAGACTAAATTTCTAGCCCATG
456 GCATGTATGAATCGAAAGGATTGCCTAAGGCCGCACATTTTAAGAGACTAAATTTCTAGCCCATG
38808191 AAAAGTGGTATAAGAGCTTTGGTCACGAAGGCACCATCGAGATGTCGAAAGAAGTTATCGATCAG
521 AAAAGTGGTATAAGAGCTTTGGTCACGAAGGCACCATCGAGATGTCGAAAGAAGTTATCGATCAG
38808256 AATGATTCAGAATGATCAGAATGTCAGCTTTAGAGGACCGAGTGGACAAACTCGAGGAGTCCAAA
586 AATGATTCAGAATGATCAGAATGTCAGCTTTAGAGGACCGAGTGGACAAACTCGAGGAGTCCAAA
*
38808321 GACTTTGTCATCATGTCTCTCAATTCCAATGTAGATAAGGTAAACGAGTTATTAAATTCACATAC
651 GACTTTGTGATCATGTCTCTCAATTCCAATGTAGATAAGGTAAACGAGTTATTAAATTCACATAC
38808386 GAATAAGTTGACAGAGAGGAATGATGCTCTTGAGGCCATGGTGATGGCTTTGAAGGAAGAAACAA
716 GAATAAGTTGACAGAGAGGAATGATGCTCTTGAGGCCATGGTGATGGCTTTGAAGGAAGAAACAA
38808451 TGGCCACAACAAAGGCTTTGAGCACAAGAATAGAGGAGCTTGAGGGAGAGCTTGCCTTGTGTCGA
781 TGGCCACAACAAAGGCTTTGAGCACAAGAATAGAGGAGCTTGAGGGAGAGCTTGCCTTGTGTCGA
38808516 GTAGCCATGAGGAATAGAGTGTCAAGTGCAGCACTCAAT
846 GTAGCCATGAGGAATAGAGTGTCAAGTGCAGCACTCAAT
38808555 ATTTGAAGCCTAACTGGCCCAATAATGCTTATATAAAAAGATAAGCTACCTTGGCAAATATGGGA
1 ATTTGAAGCCTAACTGGCCCAATAATGCTTATATAAAAAGATAAGCTACCTTGGCAAATATGGGA
38808620 GCTACTCTTAGAATATTGAGGGGAACCATATCTTATAAGATTAGATTAGATTTGATATTATAAAT
66 GCTACTCTTAGAATATTGAGGGGAACCATATCTTATAAGATTAGATTAGATTTGATATTATAAAT
38808685 CTTATAAATCCTTTAATTGTAGGGATAGACTAATCTCGTCCATCGATGTAAGTTGATCTAGATCA
131 CTTATAAATCCTTTAATTGTAGGGATAGACTAATCTCGTCCATCGATGTAAGTTGATCTAGATCA
38808750 TGGTTTTTGGGGGAGCTCAACTATAAATAGAGAGCCCCCTCCTCACTTGTAATGCATTCCATTCT
196 TGGTTTTTGGGGGAGCTCAACTATAAATAGAGAGCCCCCTCCTCACTTGTAATGCATTCCATTCT
38808815 TTATTGTTTCTTGTATTCTTTGATAGAAAGTAATACAATTAAGAGTATTTACTCAAACACCACTC
261 TTATTGTTTCTTGTATTCTTTGATAGAAAGTAATACAATTAAGAGTATTTACTCAAACACCACTC
38808880 GTGCTTAGTTTTTTGTGGCTACTATGTTCTTTTGAGCCTTCTTTTGGCTAAGTTGCTTCTACTAT
326 GTGCTTAGTTTTTTGTGGCTACTATGTTCTTTTGAGCCTTCTTTTGGCTAAGTTGCTTCTACTAT
38808945 ATAAATTGGTGCCTTGGAGGAATTCTTTGTGAATCATCATTTGTTTGGTGGTTAGACTGACTTAG
391 ATAAATTGGTGCCTTGGAGGAATTCTTTGTGAATCATCATTTGTTTGGTGGTTAGACTGACTTAG
38809010 GCATGTATGAATCGAAAGGATTGCCTAAGGCCGCACATTTTAAGAGACTAAATTTCTAGCCCATG
456 GCATGTATGAATCGAAAGGATTGCCTAAGGCCGCACATTTTAAGAGACTAAATTTCTAGCCCATG
38809075 AAAAGTGGTATAAGAGCTTTGGTCACGAAGGCACCATCGAGATGTCGAAAGAAGTTATCGATCAG
521 AAAAGTGGTATAAGAGCTTTGGTCACGAAGGCACCATCGAGATGTCGAAAGAAGTTATCGATCAG
38809140 AATGATTCAGAATGATCAGAATGTCAGCTTTAGAGGACCGAGTGGACAAACTCGAGGAGTCCAAA
586 AATGATTCAGAATGATCAGAATGTCAGCTTTAGAGGACCGAGTGGACAAACTCGAGGAGTCCAAA
38809205 GACTTTGTGATCATGTCTCTCAATTCCAATGTAGATAAGGTAAACGAGTTATTAAATTCACATAC
651 GACTTTGTGATCATGTCTCTCAATTCCAATGTAGATAAGGTAAACGAGTTATTAAATTCACATAC
*
38809270 GAATAAGTTGACAGAGAGGAATGATGCTCTTGAGGCAATGGTGATGGCTTTGAAGGAAGAAACAA
716 GAATAAGTTGACAGAGAGGAATGATGCTCTTGAGGCCATGGTGATGGCTTTGAAGGAAGAAACAA
38809335 TGGCCACAACAAAGGCTTTGAGCACAAGAATAGAGGAGCTTGAGGGAGAGCTTGCCTTGTGTCGA
781 TGGCCACAACAAAGGCTTTGAGCACAAGAATAGAGGAGCTTGAGGGAGAGCTTGCCTTGTGTCGA
38809400 GTAGCCATGAGGAATAGAGTGTCAAGTGCAGCACTCAAT
846 GTAGCCATGAGGAATAGAGTGTCAAGTGCAGCACTCAAT
38809439 TGCGAGAATA
Statistics
Matches: 1764, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
884 1764 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (884 bp):
ATTTGAAGCCTAACTGGCCCAATAATGCTTATATAAAAAGATAAGCTACCTTGGCAAATATGGGA
GCTACTCTTAGAATATTGAGGGGAACCATATCTTATAAGATTAGATTAGATTTGATATTATAAAT
CTTATAAATCCTTTAATTGTAGGGATAGACTAATCTCGTCCATCGATGTAAGTTGATCTAGATCA
TGGTTTTTGGGGGAGCTCAACTATAAATAGAGAGCCCCCTCCTCACTTGTAATGCATTCCATTCT
TTATTGTTTCTTGTATTCTTTGATAGAAAGTAATACAATTAAGAGTATTTACTCAAACACCACTC
GTGCTTAGTTTTTTGTGGCTACTATGTTCTTTTGAGCCTTCTTTTGGCTAAGTTGCTTCTACTAT
ATAAATTGGTGCCTTGGAGGAATTCTTTGTGAATCATCATTTGTTTGGTGGTTAGACTGACTTAG
GCATGTATGAATCGAAAGGATTGCCTAAGGCCGCACATTTTAAGAGACTAAATTTCTAGCCCATG
AAAAGTGGTATAAGAGCTTTGGTCACGAAGGCACCATCGAGATGTCGAAAGAAGTTATCGATCAG
AATGATTCAGAATGATCAGAATGTCAGCTTTAGAGGACCGAGTGGACAAACTCGAGGAGTCCAAA
GACTTTGTGATCATGTCTCTCAATTCCAATGTAGATAAGGTAAACGAGTTATTAAATTCACATAC
GAATAAGTTGACAGAGAGGAATGATGCTCTTGAGGCCATGGTGATGGCTTTGAAGGAAGAAACAA
TGGCCACAACAAAGGCTTTGAGCACAAGAATAGAGGAGCTTGAGGGAGAGCTTGCCTTGTGTCGA
GTAGCCATGAGGAATAGAGTGTCAAGTGCAGCACTCAAT
Done.