Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 150 of 189
Found at i:45430670 original size:64 final size:64
Alignment explanation
Indices: 45430599--45430740 Score: 207
Period size: 64 Copynumber: 2.2 Consensus size: 64
45430589 CATAATTTAT
* * *
45430599 ATAACTTACATAATTCAAACATCAAATATT-TTAACTTACATAATTTACATA-ATTTACATAATA
1 ATAACTTACATAATTCAAACATCAAAT-TTCATAACTTACATAAGTTACA-AGACTTACATAATA
45430662 C
64 C
* *
45430663 ATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATAAGTTACAAGACTTACATAATAC
1 ATAACTTACATAATTCAAACATCAAATTTCATAACTTACATAAGTTACAAGACTTACATAATAC
45430727 ATAACTTACATAAT
1 ATAACTTACATAAT
45430741 ACATTACTTA
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
63 3 0.04
64 68 0.96
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.35
Consensus pattern (64 bp):
ATAACTTACATAATTCAAACATCAAATTTCATAACTTACATAAGTTACAAGACTTACATAATAC
Found at i:45430673 original size:34 final size:34
Alignment explanation
Indices: 45430630--45430880 Score: 161
Period size: 34 Copynumber: 7.9 Consensus size: 34
45430620 TCAAATATTT
* *
45430630 TAACTTACATAATTTACATAATTTACATAATACA
1 TAACTTACATAACTTACATAACTTACATAATACA
* *
45430664 TAACTTACATAATTTA-A-AGA--T-CA-AATTTCA
1 TAACTTACATAACTTACATA-ACTTACATAA-TACA
*
45430694 TAACTTACATAAGTTACA-AGACTTACATAATACA
1 TAACTTACATAACTTACATA-ACTTACATAATACA
45430728 TAACTTACATAA--TAC---A-TTAC-T--TACA
1 TAACTTACATAACTTACATAACTTACATAATACA
* * *
45430753 TAACTTCCATAA--TACACAAATTACATAAATTACA
1 TAACTTACATAACTTACATAACTTACAT-AA-TACA
* *
45430787 GT-A-TT-CACAACTTACATAACTTACATCATACA
1 -TAACTTACATAACTTACATAACTTACATAATACA
* *
45430819 AAACTTACACAACTTACATAACTTACATAATACA
1 TAACTTACATAACTTACATAACTTACATAATACA
* *
45430853 CAACTTACATTACTTACATAA--TACATAA
1 TAACTTACATAACTTACATAACTTACATAA
45430881 CTTGCATAAA
Statistics
Matches: 182, Mismatches: 13, Indels: 46
0.76 0.05 0.19
Matches are distributed among these distances:
25 18 0.10
27 1 0.01
28 5 0.03
29 7 0.04
30 21 0.12
31 5 0.03
32 20 0.11
33 8 0.04
34 94 0.52
35 3 0.02
ACGTcount: A:0.47, C:0.20, G:0.02, T:0.32
Consensus pattern (34 bp):
TAACTTACATAACTTACATAACTTACATAATACA
Found at i:45430680 original size:48 final size:47
Alignment explanation
Indices: 45430582--45430755 Score: 142
Period size: 48 Copynumber: 3.6 Consensus size: 47
45430572 TAAAATTTCA
* * * * * *
45430582 TAACGTACATAATTTATATAACTTACATAATTCAAACATCAAATATTT
1 TAACTTACATAATTTACATAACTTACATAATACAAAC-TTACATAATT
*
45430630 TAACTTACATAATTTACATAATTTACATAATACATAACTTACATAATT
1 TAACTTACATAATTTACATAACTTACATAATACA-AACTTACATAATT
** *
45430678 TAA-AGATCA-AATTT-CATAACTTACATAAGTTACAAGACTTACATAATACA
1 TAACTTA-CATAATTTACATAACTTACATAA--TACAA-ACTTACATAAT--T
*
45430728 TAACTTACATAA--TACATTACTTACATAA
1 TAACTTACATAATTTACATAACTTACATAA
45430756 CTTCCATAAT
Statistics
Matches: 102, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
46 13 0.13
47 7 0.07
48 57 0.56
49 4 0.04
50 18 0.18
51 3 0.03
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.36
Consensus pattern (47 bp):
TAACTTACATAATTTACATAACTTACATAATACAAACTTACATAATT
Found at i:45430744 original size:41 final size:41
Alignment explanation
Indices: 45430630--45430928 Score: 151
Period size: 41 Copynumber: 7.2 Consensus size: 41
45430620 TCAAATATTT
* *
45430630 TAACTTACATAATTTACATAATTTACATAATACATAACTTACA
1 TAACTTACATAA--TACACAAATTACATAATACATAACTTACA
* * *
45430673 TAA-TT---TAA-AGATCAAATTTCATAACTTACATAAGTTACA
1 TAACTTACATAATACA-CAAATTACATAA--TACATAACTTACA
* * *
45430712 -AGACTTACATAATACATAACTTACATAATACATTACTTACA
1 TA-ACTTACATAATACACAAATTACATAATACATAACTTACA
*
45430753 TAACTTCCATAATACACAAATTACATAAATTACAGT-A-TT-CA
1 TAACTTACATAATACACAAATTACAT-AA-TACA-TAACTTACA
* * *
45430794 CAACTTACATAACTTACATC--A-TACAAAACTTACACAACTTACA
1 TAACTTACATAA--TACA-CAAATTACATAA--TACATAACTTACA
* *
45430837 TAACTTACATAATACACAACTTACATTACTTACATAA--TACA
1 TAACTTACATAATACACAAATTACA-TA-ATACATAACTTACA
* * * *
45430878 TAACTTGCATAAATAAATATATATCACAT-ATATCATAACTTACA
1 TAACTTACAT-AATACACA-A-ATTACATAATA-CATAACTTACA
45430922 TAACTTA
1 TAACTTA
45430929 TTTATACCTA
Statistics
Matches: 195, Mismatches: 30, Indels: 61
0.68 0.10 0.21
Matches are distributed among these distances:
36 2 0.01
37 9 0.05
38 1 0.01
39 16 0.08
40 5 0.03
41 73 0.37
42 21 0.11
43 49 0.25
44 19 0.10
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.33
Consensus pattern (41 bp):
TAACTTACATAATACACAAATTACATAATACATAACTTACA
Found at i:45430752 original size:25 final size:24
Alignment explanation
Indices: 45430724--45430839 Score: 117
Period size: 25 Copynumber: 4.7 Consensus size: 24
45430714 ACTTACATAA
*
45430724 TACATAACTTACATAATACATTACT
1 TACATAACTTACATAATACA-AACT
* *
45430749 TACATAACTTCCATAATACACAAAT
1 TACATAACTTACATAATACA-AACT
* *
45430774 TACATAAATTACAGT-ATTCACAACT
1 TACATAACTTACA-TAATACA-AACT
*
45430799 TACATAACTTACATCATACAAAACT
1 TACATAACTTACATAATAC-AAACT
*
45430824 TACACAACTTACATAA
1 TACATAACTTACATAA
45430840 CTTACATAAT
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
24 1 0.01
25 73 0.96
26 2 0.03
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.30
Consensus pattern (24 bp):
TACATAACTTACATAATACAAACT
Found at i:45430778 original size:50 final size:49
Alignment explanation
Indices: 45430724--45430839 Score: 137
Period size: 50 Copynumber: 2.3 Consensus size: 49
45430714 ACTTACATAA
*
45430724 TACATAACTTACATAAT-ACATTACTTACATAACTTCCATAATACACAAA-T
1 TACATAACTTACATAATCACA--ACTTACATAACTTACATAATACA-AAACT
* * *
45430774 TACATAAATTACAGTATTCACAACTTACATAACTTACATCATACAAAACT
1 TACATAACTTACA-TAATCACAACTTACATAACTTACATAATACAAAACT
*
45430824 TACACAACTTACATAA
1 TACATAACTTACATAA
45430840 CTTACATAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
49 5 0.09
50 45 0.80
51 3 0.05
52 3 0.05
ACGTcount: A:0.47, C:0.22, G:0.01, T:0.30
Consensus pattern (49 bp):
TACATAACTTACATAATCACAACTTACATAACTTACATAATACAAAACT
Found at i:45430852 original size:25 final size:25
Alignment explanation
Indices: 45430824--45430889 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
45430814 ATACAAAACT
45430824 TACACAACTTACATAACTTACATAA
1 TACACAACTTACATAACTTACATAA
*
45430849 TACACAACTTACATTACTTACATAA
1 TACACAACTTACATAACTTACATAA
* *
45430874 TACATAACTTGCATAA
1 TACACAACTTACATAA
45430890 ATAAATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (25 bp):
TACACAACTTACATAACTTACATAA
Found at i:45430877 original size:59 final size:59
Alignment explanation
Indices: 45430740--45430883 Score: 177
Period size: 59 Copynumber: 2.4 Consensus size: 59
45430730 ACTTACATAA
* *
45430740 TACATTACTTACATAACTTCCATAA--TACACAAATTACATAAATTACAGTATTCACAACT
1 TACATTACTTACATAA--TACATAACTTACACAAATTACATAAATTACAGTATACACAACT
* * * * *
45430799 TACATAACTTACATCATACAAAACTTACACAACTTACATAACTTACA-TAATACACAACT
1 TACATTACTTACATAATACATAACTTACACAAATTACATAAATTACAGT-ATACACAACT
45430858 TACATTACTTACATAATACATAACTT
1 TACATTACTTACATAATACATAACTT
45430884 GCATAAATAA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
57 5 0.07
58 1 0.01
59 66 0.92
ACGTcount: A:0.45, C:0.23, G:0.01, T:0.31
Consensus pattern (59 bp):
TACATTACTTACATAATACATAACTTACACAAATTACATAAATTACAGTATACACAACT
Found at i:45430889 original size:16 final size:16
Alignment explanation
Indices: 45430630--45430862 Score: 125
Period size: 16 Copynumber: 14.6 Consensus size: 16
45430620 TCAAATATTT
45430630 TAACTTACATAATTTACA
1 TAACTTACATAA--TACA
*
45430648 TAATTTACATAATACA
1 TAACTTACATAATACA
**
45430664 TAACTTACATAATTTA
1 TAACTTACATAATACA
** *
45430680 -AAGAT-CA-AATTTCA
1 TAACTTACATAA-TACA
45430694 TAACTTACATAAGTTACA
1 TAACTTACATAA--TACA
45430712 -AGACTTACATAATACA
1 TA-ACTTACATAATACA
45430728 TAACTTACATAATAC-
1 TAACTTACATAATACA
45430743 --A-TTAC-T--TACA
1 TAACTTACATAATACA
*
45430753 TAACTTCCATAATACA
1 TAACTTACATAATACA
* *
45430769 CAAATTACATAAATTACA
1 TAACTTACAT-AA-TACA
*
45430787 GT-A-TTCACA-ACTTACA
1 -TAACTT-ACATA-ATACA
*
45430803 TAACTTACATCATACA
1 TAACTTACATAATACA
* *
45430819 AAACTTACACAACTTACA
1 TAACTTACATAA--TACA
45430837 TAACTTACATAATACA
1 TAACTTACATAATACA
*
45430853 CAACTTACAT
1 TAACTTACAT
45430863 TACTTACATA
Statistics
Matches: 167, Mismatches: 24, Indels: 50
0.69 0.10 0.21
Matches are distributed among these distances:
9 3 0.02
11 1 0.01
12 5 0.03
13 6 0.04
14 6 0.04
15 7 0.04
16 82 0.49
17 10 0.06
18 47 0.28
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (16 bp):
TAACTTACATAATACA
Found at i:45435486 original size:25 final size:25
Alignment explanation
Indices: 45435466--45435915 Score: 148
Period size: 23 Copynumber: 19.1 Consensus size: 25
45435456 CAGCATTTTC
45435466 ACACCAAAATTTGGACAGCATATAT
1 ACACCAAAATTTGGACAGCATATAT
* *
45435491 ACA--ACAATTTGGGCAGCATATAT
1 ACACCAAAATTTGGACAGCATATAT
* * * *
45435514 ACAACAAAA-TTGAACAGCATTTTT
1 ACACCAAAATTTGGACAGCATATAT
*
45435538 ACACCAAAAATTGGACAGCATATAT
1 ACACCAAAATTTGGACAGCATATAT
* *
45435563 ACAAC-AAA-TTGGGCAGCATATAT
1 ACACCAAAATTTGGACAGCATATAT
* * * *
45435586 ATACC-AAA-TT-GAGCAACATTTTT
1 ACACCAAAATTTGGA-CAGCATATAT
*
45435609 ACATCAAAA-TTGGACAGCATATAT
1 ACACCAAAATTTGGACAGCATATAT
*
45435633 ACA--ACAATTTAGG-CAGCATATAT
1 ACACCAAAATTT-GGACAGCATATAT
* * * * *
45435656 ATAAC-AAA-TT-GAGCAACATTTTT
1 ACACCAAAATTTGGA-CAGCATATAT
* * *
45435679 ACATCAAAA-CTGGACAGTATATAT
1 ACACCAAAATTTGGACAGCATATAT
*
45435703 ACA--ACAATTTAGG-CAGCATATAT
1 ACACCAAAATTT-GGACAGCATATAT
* * * * *
45435726 ATAAC-AAA-TT-GAGCAACATTTTT
1 ACACCAAAATTTGGA-CAGCATATAT
*
45435749 ACATCAAAA-TTGGACAGCATATAT
1 ACACCAAAATTTGGACAGCATATAT
* *
45435773 ACA--ACAATTTAGG-CAGTATATAT
1 ACACCAAAATTT-GGACAGCATATAT
* * * *
45435796 ATACC-AAA-TAGAGTA-A-CATTTTT
1 ACACCAAAATTTG-G-ACAGCATATAT
*
45435819 ACATCAAAA-TTGGACAGCATATAT
1 ACACCAAAATTTGGACAGCATATAT
*
45435843 A-A-AAAAATTTAGG-CAGCATATAT
1 ACACCAAAATTT-GGACAGCATATAT
* * * *
45435866 ATACC-AAA-TT-GAGCAACATTTTT
1 ACACCAAAATTTGGA-CAGCATATAT
* *
45435889 ACATCAAAA-TTGGATAGCATATAT
1 ACACCAAAATTTGGACAGCATATAT
45435913 ACA
1 ACA
45435916 ACAATTTAGG
Statistics
Matches: 311, Mismatches: 74, Indels: 81
0.67 0.16 0.17
Matches are distributed among these distances:
21 3 0.01
22 16 0.05
23 153 0.49
24 109 0.35
25 30 0.10
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (25 bp):
ACACCAAAATTTGGACAGCATATAT
Found at i:45435627 original size:70 final size:70
Alignment explanation
Indices: 45435417--45435932 Score: 748
Period size: 70 Copynumber: 7.3 Consensus size: 70
45435407 GGACAACCCT
* * * * * * *
45435417 TATACATCAATTT-GGACAACATTTATATACCAAACT-AGACAGCATTTTCACACCAAAATTTGG
1 TATACAACAATTTAGG-CAGCATATATATACCAAATTGAG-CAACATTTTTACATCAAAA-TTGG
45435480 ACAGCATA
63 ACAGCATA
* * * * * *
45435488 TATACAACAATTTGGGCAGCATATATACAACAAAATTGAACAGCATTTTTACACCAAAAATTGGA
1 TATACAACAATTTAGGCAGCATATATA-TACCAAATTGAGCAACATTTTTACATC-AAAATTGGA
45435553 CAGCATA
64 CAGCATA
* *
45435560 TATACAACAAATTGGGCAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACA
1 TATACAACAATTTAGGCAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACA
45435625 GCATA
66 GCATA
* *
45435630 TATACAACAATTTAGGCAGCATATATATAACAAATTGAGCAACATTTTTACATCAAAACTGGACA
1 TATACAACAATTTAGGCAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACA
*
45435695 GTATA
66 GCATA
*
45435700 TATACAACAATTTAGGCAGCATATATATAACAAATTGAGCAACATTTTTACATCAAAATTGGACA
1 TATACAACAATTTAGGCAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACA
45435765 GCATA
66 GCATA
* * *
45435770 TATACAACAATTTAGGCAGTATATATATACCAAATAGAGTAACATTTTTACATCAAAATTGGACA
1 TATACAACAATTTAGGCAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACA
45435835 GCATA
66 GCATA
* * *
45435840 TATAAAAAAATTTAGGCAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGATA
1 TATACAACAATTTAGGCAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACA
45435905 GCATA
66 GCATA
45435910 TATACAACAATTTAGGCAGCATA
1 TATACAACAATTTAGGCAGCATA
45435933 AATACAACGA
Statistics
Matches: 408, Mismatches: 33, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
70 300 0.74
71 43 0.11
72 60 0.15
73 5 0.01
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (70 bp):
TATACAACAATTTAGGCAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACA
GCATA
Found at i:45436691 original size:28 final size:28
Alignment explanation
Indices: 45436659--45436759 Score: 150
Period size: 28 Copynumber: 3.6 Consensus size: 28
45436649 TAATAAGTTC
45436659 GCACACTTAGTGCTTAATAATCAATCTT
1 GCACACTTAGTGCTTAATAATCAATCTT
*
45436687 GCACACTTAGTGCTTAATAATCAATCTC
1 GCACACTTAGTGCTTAATAATCAATCTT
* * * *
45436715 GCACACTTAGTGCTTTACAATTAAACTT
1 GCACACTTAGTGCTTAATAATCAATCTT
45436743 GCACACTTAGTG-TTAAT
1 GCACACTTAGTGCTTAAT
45436760 CTCATTATCA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 3 0.05
28 62 0.95
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (28 bp):
GCACACTTAGTGCTTAATAATCAATCTT
Found at i:45439826 original size:43 final size:43
Alignment explanation
Indices: 45439722--45439935 Score: 322
Period size: 43 Copynumber: 5.0 Consensus size: 43
45439712 AGTTTATAGA
45439722 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
* * *
45439765 -AAAGCGCCGTTAAAAGTCATGACCTTTAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
* * *
45439807 AAAAGCGCCGCTAAAAGTCATGATCTATAGCAGCATTTGCGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
**
45439850 AAAAGTACCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
* * *
45439893 AAAAACGCTGCTAAAGGTCATGATCTATAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
45439936 GTAAGTGCCG
Statistics
Matches: 151, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
42 39 0.26
43 112 0.74
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAAGTCATGATCTATAGCGGCGTTTGTGGG
Found at i:45439997 original size:22 final size:22
Alignment explanation
Indices: 45439966--45440009 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
45439956 TAATGGCGCT
* *
45439966 AAAAAGCGCCGCTAAAAGCCTA
1 AAAAAACGCCGCTAAAAACCTA
45439988 AAAAAACGCCGCTAAAAACCTA
1 AAAAAACGCCGCTAAAAACCTA
45440010 TTTTGGTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.27, G:0.14, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAACCTA
Found at i:45440312 original size:36 final size:36
Alignment explanation
Indices: 45440257--45440326 Score: 108
Period size: 36 Copynumber: 1.9 Consensus size: 36
45440247 CGAGTTATAG
45440257 AAAAGCCAACACCTAAAAACAAACAC-AAGTCATCAA
1 AAAAGCCAACACCTAAAAACAAACACTAA-TCATCAA
45440293 AAAAGACCAACACCT-AAAACAAACACTAATCATC
1 AAAAG-CCAACACCTAAAAACAAACACTAATCATC
45440327 GAGCTTCACA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
36 21 0.66
37 11 0.34
ACGTcount: A:0.57, C:0.29, G:0.04, T:0.10
Consensus pattern (36 bp):
AAAAGCCAACACCTAAAAACAAACACTAATCATCAA
Found at i:45442282 original size:21 final size:21
Alignment explanation
Indices: 45442249--45442289 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
45442239 ATATTTTAAT
*
45442249 TTTTATGTATATTATAATTTA
1 TTTTAAGTATATTATAATTTA
*
45442270 TTTTAAGTTTATTATAATTT
1 TTTTAAGTATATTATAATTT
45442290 TAGTTAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (21 bp):
TTTTAAGTATATTATAATTTA
Found at i:45449049 original size:22 final size:22
Alignment explanation
Indices: 45449021--45449062 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
45449011 ATTGGATTTT
*
45449021 ATCTAAATTTATTATAATTTAA
1 ATCTAAATATATTATAATTTAA
*
45449043 ATCTAAATATATTTTAATTT
1 ATCTAAATATATTATAATTT
45449063 TTATGTCTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (22 bp):
ATCTAAATATATTATAATTTAA
Found at i:45457112 original size:24 final size:24
Alignment explanation
Indices: 45457085--45457153 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 24
45457075 ATTTTAAATT
45457085 TTTACTCTAATAATATTTTTATAA
1 TTTACTCTAATAATATTTTTATAA
* * *
45457109 TTTA-TGT--T--TA--TGTATAT
1 TTTACTCTAATAATATTTTTATAA
45457126 TTTACTCTAATAATATTTTTATAA
1 TTTACTCTAATAATATTTTTATAA
45457150 TTTA
1 TTTA
45457154 AAGTAAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 14
0.62 0.12 0.27
Matches are distributed among these distances:
17 9 0.28
18 2 0.06
19 2 0.06
20 1 0.03
21 1 0.03
22 2 0.06
23 2 0.06
24 13 0.41
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (24 bp):
TTTACTCTAATAATATTTTTATAA
Found at i:45459190 original size:22 final size:23
Alignment explanation
Indices: 45459137--45459192 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
45459127 TTTAATTAAA
* * *
45459137 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
45459160 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
45459182 ATTAAAATTAA
1 ATTAAAATTAA
45459193 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:45459205 original size:16 final size:16
Alignment explanation
Indices: 45459168--45459207 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
45459158 TTAATAAAAT
* *
45459168 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
45459184 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
45459200 TAAAATTA
1 TAAAATTA
45459208 TCAAATTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:45459286 original size:59 final size:59
Alignment explanation
Indices: 45459218--45459416 Score: 380
Period size: 59 Copynumber: 3.4 Consensus size: 59
45459208 TCAAATTGTT
* *
45459218 AATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
45459277 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
45459336 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
45459395 AATTATTAATTGTATTAATTGT
1 AATTATTAATTGTATTAATTGT
45459417 ATTAATTGTT
Statistics
Matches: 138, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 138 1.00
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.46
Consensus pattern (59 bp):
AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAATTTATCA
Found at i:45459410 original size:9 final size:9
Alignment explanation
Indices: 45459398--45459425 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
45459388 TTTATCAAAT
45459398 TATTAATTG
1 TATTAATTG
45459407 TATTAATTG
1 TATTAATTG
45459416 TATTAATTG
1 TATTAATTG
45459425 T
1 T
45459426 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:45468419 original size:99 final size:99
Alignment explanation
Indices: 45468197--45468404 Score: 371
Period size: 99 Copynumber: 2.1 Consensus size: 99
45468187 GGATTTTGCA
*
45468197 GGTTAGGGTTTATGGGAAGAGGTGGCGGAGGACCCATCGTGGTTTTGGCTTTTATGAGTTCGGAT
1 GGTTAGGGTTTATGGGAAGAGGTGGCGGAGGACCCATCGTGGTTTTGGCTGTTATGAGTTCGGAT
*
45468262 TCTTCTAGGGCTATCGACTCGGGTTCGGTCGCGG
66 TCTTCTAGGGCTATCGACTCGGGTTCGGTCGAGG
* *
45468296 GGTTAGGGTTTATGGGAAGAGGTGGCGGAGGACCCATCGTGGTTTTGGCTGTTCTGGGTTCGGAT
1 GGTTAGGGTTTATGGGAAGAGGTGGCGGAGGACCCATCGTGGTTTTGGCTGTTATGAGTTCGGAT
*
45468361 TCTTCTTGGGCTATCGACTCGGGTTCGGTCGAGG
66 TCTTCTAGGGCTATCGACTCGGGTTCGGTCGAGG
45468395 GGTTAGGGTT
1 GGTTAGGGTT
45468405 CCTGGGAGGC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 104 1.00
ACGTcount: A:0.13, C:0.15, G:0.40, T:0.32
Consensus pattern (99 bp):
GGTTAGGGTTTATGGGAAGAGGTGGCGGAGGACCCATCGTGGTTTTGGCTGTTATGAGTTCGGAT
TCTTCTAGGGCTATCGACTCGGGTTCGGTCGAGG
Found at i:45468457 original size:8 final size:8
Alignment explanation
Indices: 45468445--45468492 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
45468435 CATGGTTGCA
*
45468445 GAGAGAGA
1 GAGAGAGG
45468453 GAGAGAGG
1 GAGAGAGG
*
45468461 GAGGGAGG
1 GAGAGAGG
*
45468469 GAGGGAGG
1 GAGAGAGG
45468477 GAGAGAGG
1 GAGAGAGG
*
45468485 GAGGGAGG
1 GAGAGAGG
45468493 TGTTGCAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (8 bp):
GAGAGAGG
Found at i:45468459 original size:12 final size:12
Alignment explanation
Indices: 45468453--45468491 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
45468443 CAGAGAGAGA
45468453 GAGAGAGGGAGG
1 GAGAGAGGGAGG
*
45468465 GAGGGAGGGAGG
1 GAGAGAGGGAGG
45468477 GAGAGAGGGAGG
1 GAGAGAGGGAGG
45468489 GAG
1 GAG
45468492 GTGTTGCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.69, T:0.00
Consensus pattern (12 bp):
GAGAGAGGGAGG
Found at i:45468488 original size:4 final size:4
Alignment explanation
Indices: 45468457--45468492 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
45468447 GAGAGAGAGA
*
45468457 GAGG GAGG GAGG GAGG GAGG GAGA GAGG GAGG GAGG
1 GAGG GAGG GAGG GAGG GAGG GAGG GAGG GAGG GAGG
45468493 TGTTGCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.28, C:0.00, G:0.72, T:0.00
Consensus pattern (4 bp):
GAGG
Found at i:45469750 original size:34 final size:33
Alignment explanation
Indices: 45469707--45469814 Score: 118
Period size: 34 Copynumber: 3.3 Consensus size: 33
45469697 GTTTAGGTGT
*
45469707 TTTAGGGTTTAGTGTTAGGGTTTTGTTAAAATAA
1 TTTA-GGTTTAGTGTTAGGATTTTGTTAAAATAA
45469741 TTTATGG--T--T-TTAGGATTTTGTTAAAATAA
1 TTTA-GGTTTAGTGTTAGGATTTTGTTAAAATAA
* * *
45469770 TTTAGGTTTAGGGTTTAAGCTTTTGTTAAAATAA
1 TTTAGGTTTAGTG-TTAGGATTTTGTTAAAATAA
45469804 TTTAGGTTTAG
1 TTTAGGTTTAG
45469815 GGTGTATGGT
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
28 2 0.03
29 23 0.37
30 2 0.03
32 1 0.02
34 35 0.56
ACGTcount: A:0.28, C:0.01, G:0.22, T:0.49
Consensus pattern (33 bp):
TTTAGGTTTAGTGTTAGGATTTTGTTAAAATAA
Found at i:45469941 original size:33 final size:33
Alignment explanation
Indices: 45469842--45469953 Score: 125
Period size: 33 Copynumber: 3.3 Consensus size: 33
45469832 TTTTAAAAAA
*
45469842 TAAATTAGGGTTTAGAGTTTTTTAAAAAAAATTAAT
1 TAAATTA-GGTTTAGAG-ATTTT-AAAAAAATTAAT
* * * *
45469878 TAAATTAGGTTTTAGGGGTTTTCAATAAATTAAT
1 TAAATTAGG-TTTAGAGATTTTAAAAAAATTAAT
*
45469912 TAAATTAGGTTTAGAGATTTTAAGAAAATTAAT
1 TAAATTAGGTTTAGAGATTTTAAAAAAATTAAT
*
45469945 TAAACTAGG
1 TAAATTAGG
45469954 GTTTGGCTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
33 27 0.42
34 19 0.29
35 6 0.09
36 13 0.20
ACGTcount: A:0.42, C:0.02, G:0.16, T:0.40
Consensus pattern (33 bp):
TAAATTAGGTTTAGAGATTTTAAAAAAATTAAT
Found at i:45470185 original size:126 final size:125
Alignment explanation
Indices: 45470030--45470296 Score: 367
Period size: 126 Copynumber: 2.1 Consensus size: 125
45470020 TTTGTTTTTT
* * * *
45470030 TTTTCTACAGTAGTTTCAGAAAAATTAATTTTGATAAGA-TGGTTCTGAAAAAATAATGTCAAAA
1 TTTTCTACAGTAGTTCCAGAAAAAATAATTTTGAGAAGACT-ATTCTGAAAAAATAATGTCAAAA
* * * * * *
45470094 ACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAGAAGCTTCCACGTGGACGCTC
65 ACACTTCAAGCAGGATGCACTGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGACGCTC
* *
45470155 TTTTACTACAGTAGTTCCTA-AAAAAATAATTTTGAGAAGACTATTCTGAACAAATAGTGTCAAA
1 TTTT-CTACAGTAGTTCC-AGAAAAAATAATTTTGAGAAGACTATTCTGAAAAAATAATGTCAAA
*
45470219 AACACTTCAAGCAGGATGCACTGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGGCGCTC
64 AACACTTCAAGCAGGATGCACTGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGACGCTC
45470281 TTATTCTACAGTAGTT
1 TT-TTCTACAGTAGTT
45470297 ACTGTTTGGC
Statistics
Matches: 125, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
125 4 0.03
126 117 0.94
127 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (125 bp):
TTTTCTACAGTAGTTCCAGAAAAAATAATTTTGAGAAGACTATTCTGAAAAAATAATGTCAAAAA
CACTTCAAGCAGGATGCACTGTCAGCAAAAATACTAAAAAAAGCTCCCACGTGGACGCTC
Found at i:45473540 original size:21 final size:21
Alignment explanation
Indices: 45473515--45473555 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
45473505 TGGTTAAGCT
45473515 TCCGGCGGGGGTTGTGGTTGC
1 TCCGGCGGGGGTTGTGGTTGC
*
45473536 TCCGGTGGGGGTTGTGGTTG
1 TCCGGCGGGGGTTGTGGTTG
45473556 TGGGTGTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.15, G:0.54, T:0.32
Consensus pattern (21 bp):
TCCGGCGGGGGTTGTGGTTGC
Found at i:45473819 original size:18 final size:18
Alignment explanation
Indices: 45473793--45473835 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
45473783 GATTGGGAAA
* *
45473793 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
45473811 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
45473829 AGGATAC
1 AGGATAC
45473836 GCACCTGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:45476522 original size:20 final size:20
Alignment explanation
Indices: 45476499--45476552 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
45476489 AACTTTTTTC
* *
45476499 CTTTTATTTTCCCTTTAAAA
1 CTTTTATTTTCCCCTAAAAA
*
45476519 CTTTTACTTTCCCCTAAAAA
1 CTTTTATTTTCCCCTAAAAA
**
45476539 AATTTATTTTCCCC
1 CTTTTATTTTCCCC
45476553 AAATTTCCTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (20 bp):
CTTTTATTTTCCCCTAAAAA
Found at i:45484669 original size:14 final size:13
Alignment explanation
Indices: 45484644--45484673 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
45484634 CTAAGTCATG
45484644 ATTAAGTTAATTA
1 ATTAAGTTAATTA
45484657 ATTAAGATTAATTA
1 ATTAAG-TTAATTA
45484671 ATT
1 ATT
45484674 CCTAATCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (13 bp):
ATTAAGTTAATTA
Found at i:45494127 original size:25 final size:25
Alignment explanation
Indices: 45494079--45494127 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
45494069 CGATATAAAA
* * *
45494079 TGTAAGAAATGTGTATTGTCTGTTG
1 TGTAAGAAATGGGTACTATCTGTTG
*
45494104 TGTAAGAAATGGGTACTATTTGTT
1 TGTAAGAAATGGGTACTATCTGTT
45494128 AGACTTAAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.04, G:0.27, T:0.43
Consensus pattern (25 bp):
TGTAAGAAATGGGTACTATCTGTTG
Found at i:45495175 original size:15 final size:15
Alignment explanation
Indices: 45495155--45495199 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
45495145 GATTTGTGTT
45495155 AGTTTTCATTTGACC
1 AGTTTTCATTTGACC
45495170 AGTTTTCATTTGACC
1 AGTTTTCATTTGACC
45495185 AGTTTTCATTTGACC
1 AGTTTTCATTTGACC
45495200 TAACAAAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (15 bp):
AGTTTTCATTTGACC
Found at i:45496379 original size:24 final size:24
Alignment explanation
Indices: 45496322--45496435 Score: 83
Period size: 24 Copynumber: 4.8 Consensus size: 24
45496312 AGCTGCATGG
* *
45496322 TGTGGTCAAACCACTCAAT-TACGT
1 TGTGGTCAAGCCACTCAATAT-TGT
*
45496346 TGTGGCCAAGCCACTCAATATTGT
1 TGTGGTCAAGCCACTCAATATTGT
* ** *
45496370 TGTGGTCAAGTCACTCGTTAGCT-T
1 TGTGGTCAAGCCACTCAATA-TTGT
* *
45496394 TGTAGG-CAAGCTACTC-ATATTTT
1 TGT-GGTCAAGCCACTCAATATTGT
*
45496417 TGTGGACAAGCCACTCAAT
1 TGTGGTCAAGCCACTCAAT
45496436 TTTACAGTAA
Statistics
Matches: 71, Mismatches: 13, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
22 3 0.04
23 15 0.21
24 49 0.69
25 4 0.06
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (24 bp):
TGTGGTCAAGCCACTCAATATTGT
Found at i:45496426 original size:23 final size:22
Alignment explanation
Indices: 45496392--45496438 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
45496382 ACTCGTTAGC
*
45496392 TTTGTAGGCAAGCTACTCATATT
1 TTTGTAGGCAAGCCACTCA-ATT
45496415 TTTGT-GGACAAGCCACTCAATT
1 TTTGTAGG-CAAGCCACTCAATT
45496437 TT
1 TT
45496439 ACAGTAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (22 bp):
TTTGTAGGCAAGCCACTCAATT
Found at i:45496574 original size:42 final size:42
Alignment explanation
Indices: 45496523--45496628 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 42
45496513 ATTATCAGTA
* *
45496523 GGCACGCTTAACATGCGAATCATATC-TAAGATCAACATAATC
1 GGCAAGCTTAACATGCGAATCAGATCTTAA-ATCAACATAATC
* * * *
45496565 GGCATGCTTAACATGCAAATCAGATCTTAATTCATCATAATC
1 GGCAAGCTTAACATGCGAATCAGATCTTAAATCAACATAATC
45496607 GGCAAGCTTAACATGCGAATCA
1 GGCAAGCTTAACATGCGAATCA
45496629 AATATCATTA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 53 0.95
43 3 0.05
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (42 bp):
GGCAAGCTTAACATGCGAATCAGATCTTAAATCAACATAATC
Found at i:45499563 original size:20 final size:21
Alignment explanation
Indices: 45499538--45499579 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
45499528 ATCTATCTTC
45499538 TTTATTGTTCTAATTT-TTTA
1 TTTATTGTTCTAATTTATTTA
*
45499558 TTTATTGTTCTATTTTATTTA
1 TTTATTGTTCTAATTTATTTA
45499579 T
1 T
45499580 CTAGTTACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.71
Consensus pattern (21 bp):
TTTATTGTTCTAATTTATTTA
Found at i:45502313 original size:17 final size:18
Alignment explanation
Indices: 45502283--45502319 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
45502273 TATTATCACT
*
45502283 TTTACAATCTATTGAAAA
1 TTTACAATCAATTGAAAA
45502301 TTTA-AATCAATTGAAAA
1 TTTACAATCAATTGAAAA
45502318 TT
1 TT
45502320 AATATTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (18 bp):
TTTACAATCAATTGAAAA
Found at i:45508832 original size:14 final size:14
Alignment explanation
Indices: 45508810--45508846 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 14
45508800 GAAAAAAAAG
45508810 AGAGAAAGGAGAAGA
1 AGAG-AAGGAGAAGA
45508825 AGAGAAGGAGAAGA
1 AGAGAAGGAGAAGA
45508839 AGAAGAAG
1 AG-AGAAG
45508847 AAAGAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (14 bp):
AGAGAAGGAGAAGA
Found at i:45509040 original size:20 final size:20
Alignment explanation
Indices: 45509015--45509092 Score: 86
Period size: 22 Copynumber: 3.9 Consensus size: 20
45509005 TTTAGATTAG
*
45509015 AATTTTGTATGAATATTTTA
1 AATTTTGTATGAATATTATA
45509035 AATTTTTTGTATGAATATTATA
1 AA--TTTTGTATGAATATTATA
* * *
45509057 ATTTTTTTATGAATATTGT-
1 AATTTTGTATGAATATTATA
*
45509076 AATGTTGTATGAATATT
1 AATTTTGTATGAATATT
45509093 GTAATTATTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
19 14 0.29
20 17 0.35
22 18 0.37
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (20 bp):
AATTTTGTATGAATATTATA
Found at i:45509088 original size:19 final size:19
Alignment explanation
Indices: 45509041--45509097 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
45509031 TTTAAATTTT
* *
45509041 TTGTATGAATATTATAATTT
1 TTGTATGAATATTGTAA-TG
*
45509061 TTTTATGAATATTGTAATG
1 TTGTATGAATATTGTAATG
45509080 TTGTATGAATATTGTAAT
1 TTGTATGAATATTGTAAT
45509098 TATTTTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 18 0.55
20 15 0.45
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (19 bp):
TTGTATGAATATTGTAATG
Found at i:45509175 original size:27 final size:25
Alignment explanation
Indices: 45509142--45509333 Score: 199
Period size: 27 Copynumber: 7.8 Consensus size: 25
45509132 ATTAGTAATT
45509142 TTTTGTATGAATATTGTAATATTATA
1 TTTTGTATGAATATTGTAATATT-TA
*
45509168 GTTTTGTATGAATATTG-CA-ATTT-
1 -TTTTGTATGAATATTGTAATATTTA
*
45509191 TTTTGTATGAATATTGTAATTTTGTAA
1 TTTTGTATGAATATTGTAATATT-T-A
*
45509218 TTTTATATGAATA-T-T-ATA-TT-
1 TTTTGTATGAATATTGTAATATTTA
45509238 TTTTGTATGAATATTGTAATATTATAA
1 TTTTGTATGAATATTGTAATATT-T-A
*
45509265 TTTTGTATGAATATTG-CA-ATTT-
1 TTTTGTATGAATATTGTAATATTTA
45509287 TTTTGTATGAATATTGTAATATTATAA
1 TTTTGTATGAATATTGTAATATT-T-A
45509314 TTTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
45509334 GTGGGGATAT
Statistics
Matches: 140, Mismatches: 8, Indels: 34
0.77 0.04 0.19
Matches are distributed among these distances:
20 12 0.09
21 1 0.01
22 34 0.24
23 6 0.04
24 10 0.07
25 10 0.07
26 3 0.02
27 64 0.46
ACGTcount: A:0.32, C:0.01, G:0.12, T:0.54
Consensus pattern (25 bp):
TTTTGTATGAATATTGTAATATTTA
Found at i:45509183 original size:19 final size:19
Alignment explanation
Indices: 45509159--45509216 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 19
45509149 TGAATATTGT
*
45509159 AATATTATAGTTTTGTATG
1 AATATTATAATTTTGTATG
**
45509178 AATATTGCAATTTTTTTGTATG
1 AATATT---ATAATTTTGTATG
*
45509200 AATATTGTAATTTTGTA
1 AATATTATAATTTTGTA
45509217 ATTTTATATG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 14 0.45
22 17 0.55
ACGTcount: A:0.31, C:0.02, G:0.14, T:0.53
Consensus pattern (19 bp):
AATATTATAATTTTGTATG
Found at i:45509196 original size:49 final size:49
Alignment explanation
Indices: 45509140--45509329 Score: 314
Period size: 49 Copynumber: 3.9 Consensus size: 49
45509130 GGATTAGTAA
*
45509140 TTTTTTGTATGAATATTGTAATATTATAGTTTTGTATGAATATTGCAAT
1 TTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAAT
* * *
45509189 TTTTTTGTATGAATATTGTAATTTTGTAATTTTATATGAATATT---AT
1 TTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAAT
45509235 ATTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAAT
1 -TTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAAT
45509285 TTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTG
1 TTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTG
45509330 TAATGTGGGG
Statistics
Matches: 130, Mismatches: 7, Indels: 8
0.90 0.05 0.06
Matches are distributed among these distances:
46 2 0.02
47 41 0.32
49 85 0.65
50 2 0.02
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.55
Consensus pattern (49 bp):
TTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAAT
Found at i:45509254 original size:96 final size:96
Alignment explanation
Indices: 45509139--45509386 Score: 347
Period size: 96 Copynumber: 2.6 Consensus size: 96
45509129 TGGATTAGTA
*
45509139 ATTTTTTGTATGAATATTGTAATATTATAGTTTTGTATGAATATTGCAATTTTTTTGTATGAATA
1 ATTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATA
* *
45509204 TTGTAATTTTGTAATTTTATATGAATATTAT
66 TTGTAATATTATAATTTTATATGAATATTAT
45509235 ATTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATA
1 ATTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATA
* *
45509300 TTGTAATATTATAATTTTGTATGAATATTGT
66 TTGTAATATTATAATTTTATATGAATATTAT
* * ** * * * *
45509331 AATGTGGGGAT--ATATTGTAATATTGTAATTTTTTGTATGAATATTGTAATTATTTT
1 ATTTTTTGTATGAATATTGTAATATTATAA--TTTTGTATGAATATTGCAATTTTTTT
45509387 ATAATTAATT
Statistics
Matches: 137, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 16 0.12
96 121 0.88
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (96 bp):
ATTTTTTGTATGAATATTGTAATATTATAATTTTGTATGAATATTGCAATTTTTTTGTATGAATA
TTGTAATATTATAATTTTATATGAATATTAT
Found at i:45509574 original size:38 final size:38
Alignment explanation
Indices: 45509529--45509602 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
45509519 CATATAAAGT
*
45509529 TTATAAAAAAATTTAAAATCATTTCATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
*
45509567 TTATAAAAAAATTAAAAATCATTTTATTAAAAGTTT
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTT
45509603 GGGTTTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
Found at i:45509755 original size:15 final size:15
Alignment explanation
Indices: 45509714--45509755 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
45509704 GTTAACTCAT
*
45509714 TTAATTTTTATATAA
1 TTAAATTTTATATAA
*
45509729 TGTAACTTTTATATAA
1 T-TAAATTTTATATAA
45509745 TTAAATTTTAT
1 TTAAATTTTAT
45509756 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTATATAA
Found at i:45513461 original size:39 final size:39
Alignment explanation
Indices: 45513384--45513488 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 39
45513374 TAGCTCCTCG
* * *
45513384 TTCAAGTGCCTTCGGGACATAGCCCGGTTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGTTATAGAAACTCA
* *
45513424 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGG-TTATAGAAACTCA
**
45513463 CACGAATGCCTTCGGGACTTAACCCG
1 TTC-AATGCCTTCGGGACTTAACCCG
45513489 AAATTAGTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.45
40 31 0.55
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (39 bp):
TTCAATGCCTTCGGGACTTAACCCGGTTATAGAAACTCA
Found at i:45513479 original size:40 final size:39
Alignment explanation
Indices: 45513427--45513557 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
45513417 TAACTCATTC
* *
45513427 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* * *
45513467 AATGCCTTCGGGACTTAACCCGAAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
* *
45513507 AAGGCCTTCAGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
*
45513547 AATACCTTCGG
1 AATGCCTTCGG
45513558 ATCTTAGTCC
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:45513594 original size:80 final size:80
Alignment explanation
Indices: 45513430--45513610 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 80
45513420 CTCATTCAAT
* * *
45513430 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGAAATTA
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGAAATTA
*
45513495 GTATCTCGCACAAAG
66 GTATCTAGCACAAAG
* ** *
45513510 GCCTTCAGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCG-GAT
1 GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGAAAT
45513572 ATAGTCA-CTTAGCACAAA-
64 -TAGT-ATC-TAGCACAAAG
*
45513590 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
45513611 CAGCATTCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
79 9 0.10
80 68 0.79
81 9 0.10
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGAAATTA
GTATCTAGCACAAAG
Found at i:45517918 original size:22 final size:21
Alignment explanation
Indices: 45517883--45517932 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
45517873 TACCTAATTT
*
45517883 TTTTCTTCTTTTCCTTCCTTC
1 TTTTCTTCTCTTCCTTCCTTC
45517904 TTTTCTTCTGCTTCCTTCCTTC
1 TTTTCTTCT-CTTCCTTCCTTC
45517926 TTTTCTT
1 TTTTCTT
45517933 TTTTCTTCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTTCTTCTCTTCCTTCCTTC
Found at i:45518025 original size:27 final size:27
Alignment explanation
Indices: 45517995--45518070 Score: 134
Period size: 27 Copynumber: 2.8 Consensus size: 27
45517985 AGAAAAATCA
*
45517995 CATTGGCGCCTCCCAAATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
45518022 CATTGGCGCCTCCCAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
*
45518049 CATTGGCGCCTTCCAGATAGGC
1 CATTGGCGCCTCCCAGATAGGC
45518071 GCCAATACTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.22, C:0.38, G:0.22, T:0.17
Consensus pattern (27 bp):
CATTGGCGCCTCCCAGATAGGCACCAC
Found at i:45518142 original size:21 final size:22
Alignment explanation
Indices: 45518116--45518157 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
45518106 TCGGAAAAGT
45518116 AAAAAATTA-TATTTTATTCAA
1 AAAAAATTATTATTTTATTCAA
45518137 AAAAAATTATTATTTTATTCA
1 AAAAAATTATTATTTTATTCA
45518158 TTGGCGCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (22 bp):
AAAAAATTATTATTTTATTCAA
Found at i:45518758 original size:17 final size:17
Alignment explanation
Indices: 45518736--45518768 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
45518726 AGCAATTTTC
45518736 TAATTAAAAATTTATAG
1 TAATTAAAAATTTATAG
*
45518753 TAATTAAAATTTTATA
1 TAATTAAAAATTTATA
45518769 ATTTAGTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TAATTAAAAATTTATAG
Found at i:45519783 original size:22 final size:22
Alignment explanation
Indices: 45519753--45519795 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
45519743 ACACCAAAAC
* *
45519753 AGGCTTTTAGCAGCGCTTTTTT
1 AGGCCTTTAGCAGCACTTTTTT
*
45519775 AGGCCTTTAGCGGCACTTTTT
1 AGGCCTTTAGCAGCACTTTTT
45519796 AGAAATAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.21, G:0.23, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCAGCACTTTTTT
Found at i:45519920 original size:43 final size:42
Alignment explanation
Indices: 45519855--45520090 Score: 260
Period size: 43 Copynumber: 5.5 Consensus size: 42
45519845 AGAAATAAAT
* *
45519855 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTCACCACAAAC
1 GCCGCTAAAGACCATGATCTTTAGCGGCGCTTTC-CCACAAAC
** * * *
45519898 GCCGCTAAAGGTCATGGTCTTTAGCGGCACTTCTCCAACAAAC
1 GCCGCTAAAGACCATGATCTTTAGCGGCGCTT-TCCCACAAAC
* * *
45519941 GCCGTTAAAGACCCTGATCTTTAGCGGCGC-TTCTCCAGAAAAC
1 GCCGCTAAAGACCATGATCTTTAGCGGCGCTTTC-CCA-CAAAC
* * * *
45519984 ACCGCTAAAGACCCTGATCGTTAGCGGCGTCTTTCCAACAAAC
1 GCCGCTAAAGACCATGATCTTTAGCGGCG-CTTTCCCACAAAC
*
45520027 GCCGCTGAAGACCATGATCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCATGATCTTTAGCGGCGC-TTTCCCACAAAC
*
45520070 GCCGCTAAAGACTATGA-CTTT
1 GCCGCTAAAGACCATGATCTTT
45520091 TAGTGGCGTT
Statistics
Matches: 160, Mismatches: 27, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
41 2 0.01
42 8 0.05
43 142 0.89
44 5 0.03
45 3 0.02
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (42 bp):
GCCGCTAAAGACCATGATCTTTAGCGGCGCTTTCCCACAAAC
Found at i:45520112 original size:129 final size:129
Alignment explanation
Indices: 45519856--45520090 Score: 312
Period size: 129 Copynumber: 1.8 Consensus size: 129
45519846 GAAATAAATG
* * ** *
45519856 CCGCTAAAGACCAAGACCTTTAGCGGCGCTTTCACCACAAACGCCGCTAAAGGTCATGGTCTTTA
1 CCGCTAAAGACCAAGACCGTTAGCGGCGCTTTCACAACAAACGCCGCTAAAGACCATGATCTTTA
* *
45519921 GCGGCACTTCTCCAACAAACGCCGTTAAAGACCCTGATCTTTAGCGGCGCTTCTCCAGAAAACA
66 GCGGCACTTCTCCAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTCTCCAGAAAACA
** * *
45519985 CCGCTAAAGACCCTGATCGTTAGCGGCGTCTTTC-CAACAAACGCCGCTGAAGACCATGATCTTT
1 CCGCTAAAGACCAAGACCGTTAGCGGCG-CTTTCACAACAAACGCCGCTAAAGACCATGATCTTT
* * * *
45520049 AGCGGCGCTTTTCCCACAAACGCCGCTAAAGACTATGA-CTTT
65 AGCGGCACTTCTCCAACAAACGCCGCTAAAGACCATGATCTTT
45520091 TAGTGGCGTT
Statistics
Matches: 90, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
128 4 0.04
129 81 0.90
130 5 0.06
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (129 bp):
CCGCTAAAGACCAAGACCGTTAGCGGCGCTTTCACAACAAACGCCGCTAAAGACCATGATCTTTA
GCGGCACTTCTCCAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTCTCCAGAAAACA
Found at i:45520115 original size:86 final size:86
Alignment explanation
Indices: 45519829--45520103 Score: 279
Period size: 86 Copynumber: 3.2 Consensus size: 86
45519819 GCGTCGCTAA
** * * * *
45519829 CTTTAGCGGCGTTTTTAGAAATAAATGCCGCTAAAGACCAAGACCTTTAGCGGCGC-TTTCACCA
1 CTTTAGCGGCGTTTTT-CCAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTC-CCA
* *
45519893 CAAACGCCGCTAAAG-GTCATGGT
64 CAAACGCCGCTAAAGACT-ATGAT
** * * * * *
45519916 CTTTAGCGGCACTTCTCCAACAAACGCCGTTAAAGACCCTGATCTTTAGCGGCGCTTCT-CCAGA
1 CTTTAGCGGCGTTTTTCCAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCA-C
* **
45519980 AAACACCGCTAAAGACCCTGAT
65 AAACGCCGCTAAAGACTATGAT
* * *
45520002 CGTTAGCGGCGTCTTTCCAACAAACGCCGCTGAAGACCATGATCTTTAGCGGCGCTTTTCCCACA
1 CTTTAGCGGCGTTTTTCCAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCACA
45520067 AACGCCGCTAAAGACTATGA-
66 AACGCCGCTAAAGACTATGAT
*
45520087 CTTTTAGTGGCGTTTTT
1 C-TTTAGCGGCGTTTTT
45520104 TTTAAAAACG
Statistics
Matches: 149, Mismatches: 34, Indels: 11
0.77 0.18 0.06
Matches are distributed among these distances:
85 4 0.03
86 127 0.85
87 18 0.12
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (86 bp):
CTTTAGCGGCGTTTTTCCAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCACA
AACGCCGCTAAAGACTATGAT
Found at i:45520512 original size:21 final size:21
Alignment explanation
Indices: 45520442--45520500 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
45520432 TTTTACGGTG
45520442 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
45520463 CTCTACTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
45520484 CTCTGCTTCTCTCGCTG
1 CTCTGCTTCCCTCGCTG
45520501 TCGCATCTGC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.05, C:0.46, G:0.17, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:45522925 original size:9 final size:9
Alignment explanation
Indices: 45522908--45523253 Score: 128
Period size: 9 Copynumber: 40.9 Consensus size: 9
45522898 TAAGTATAAT
*
45522908 TAAGCTATG
1 TAAGTTATG
45522917 TAAGTTATG
1 TAAGTTATG
*
45522926 TAAGTTATA
1 TAAGTTATG
*
45522935 TAAGTTGTG
1 TAAGTTATG
*
45522944 T-A-TAATG
1 TAAGTTATG
45522951 TAAGTTATG
1 TAAGTTATG
*
45522960 AAAGTTATG
1 TAAGTTATG
45522969 T-A-TTATG
1 TAAGTTATG
*
45522976 TAAGTTATT
1 TAAGTTATG
*
45522985 TAAGTTGTG
1 TAAGTTATG
45522994 T-A-TTATG
1 TAAGTTATG
*
45523001 TAAGTCATG
1 TAAGTTATG
* *
45523010 TAGGCTATG
1 TAAGTTATG
45523019 T-A-TTATG
1 TAAGTTATG
45523026 TAAGTTA--
1 TAAGTTATG
*
45523033 TAA--TAAG
1 TAAGTTATG
45523040 TAAGTTATG
1 TAAGTTATG
* *
45523049 AAAGTTATATA
1 TAAG-T-TATG
*
45523060 TAAGTTTATATA
1 TAAG--T-TATG
45523072 TAAGTTATG
1 TAAGTTATG
45523081 TAAGTTA--
1 TAAGTTATG
45523088 T-A--TATG
1 TAAGTTATG
45523094 TAAGTTATG
1 TAAGTTATG
*
45523103 T--GTTGTG
1 TAAGTTATG
*
45523110 TAAGTTTATATA
1 TAAG--T-TATG
*
45523122 TAAATTTTAT-
1 T-AA-GTTATG
45523132 TCAAGTTATG
1 T-AAGTTATG
45523142 --A---ATG
1 TAAGTTATG
45523146 TAAGTTATG
1 TAAGTTATG
*
45523155 TAAGTTGTG
1 TAAGTTATG
*
45523164 T--GTAATG
1 TAAGTTATG
45523171 TAAGTTATG
1 TAAGTTATG
45523180 T-A-TTATG
1 TAAGTTATG
* *
45523187 TAAGTTGTT
1 TAAGTTATG
*
45523196 TAAGTTATT
1 TAAGTTATG
*
45523205 TAAGTTGTG
1 TAAGTTATG
45523214 T-A-TTATG
1 TAAGTTATG
*
45523221 TAAGTCATG
1 TAAGTTATG
* *
45523230 TAGGCTATG
1 TAAGTTATG
45523239 T--GTTATG
1 TAAGTTATG
45523246 TAAGTTAT
1 TAAGTTAT
45523254 TATAAGTAAG
Statistics
Matches: 251, Mismatches: 45, Indels: 82
0.66 0.12 0.22
Matches are distributed among these distances:
4 5 0.02
5 2 0.01
6 3 0.01
7 57 0.23
8 11 0.04
9 141 0.56
10 5 0.02
11 10 0.04
12 15 0.06
13 2 0.01
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:45522955 original size:25 final size:25
Alignment explanation
Indices: 45522921--45523260 Score: 154
Period size: 25 Copynumber: 13.8 Consensus size: 25
45522911 GCTATGTAAG
*
45522921 TTATGTAAGTTATATAAGTTGTGTA
1 TTATGTAAGTTATATAAGTTATGTA
*
45522946 TAATGTAAGTTATGA-AAGTTATGTA
1 TTATGTAAGTTAT-ATAAGTTATGTA
* *
45522971 TTATGTAAGTTATTTAAGTTGTGTA
1 TTATGTAAGTTATATAAGTTATGTA
* * * *
45522996 TTATGTAAGTCATGTAGGCTATGTA
1 TTATGTAAGTTATATAAGTTATGTA
*
45523021 TTATGTAAGTTATAATAAG-TAAG--
1 TTATGTAAGTTAT-ATAAGTTATGTA
*
45523044 TTATGAAAGTTATATATAAG-T-T-TA
1 TTATGTAAG-T-TATATAAGTTATGTA
* *
45523068 -TATATAAGTTATGTAAGTTA--TA
1 TTATGTAAGTTATATAAGTTATGTA
* ** * *
45523090 -TATGTAAGTTATGTGTTGTGTAAGTT
1 TTATGTAAGTTATAT-AAGT-TATGTA
* * *
45523116 TATATATAAATTTTATTCAAGTTATG-A
1 T-TATGTAAGTTATA-T-AAGTTATGTA
* * *
45523143 --ATGTAAGTTATGTAAGTTGTGTG
1 TTATGTAAGTTATATAAGTTATGTA
* *
45523166 TAATGTAAGTTATGT-A-TTATGTAA
1 TTATGTAAGTTATATAAGTTATGT-A
* * * *
45523190 GTTGTTTAAGTTATTTAAGTTGTGTA
1 -TTATGTAAGTTATATAAGTTATGTA
* * * * *
45523216 TTATGTAAGTCATGTAGGCTATGTG
1 TTATGTAAGTTATATAAGTTATGTA
45523241 TTATGTAAGTTATTATAAGT
1 TTATGTAAGTTA-TATAAGT
45523261 AAGTTGTGAA
Statistics
Matches: 234, Mismatches: 57, Indels: 47
0.69 0.17 0.14
Matches are distributed among these distances:
21 7 0.03
22 24 0.10
23 22 0.09
24 18 0.08
25 132 0.56
26 11 0.05
27 5 0.02
28 12 0.05
29 3 0.01
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (25 bp):
TTATGTAAGTTATATAAGTTATGTA
Found at i:45522976 original size:50 final size:50
Alignment explanation
Indices: 45522909--45523040 Score: 183
Period size: 50 Copynumber: 2.6 Consensus size: 50
45522899 AAGTATAATT
*
45522909 AAGCTATGTAAGTTATGTAAGTTATATAAGTTGTGTATAATGTAAGTTATGA
1 AAGCTATGT-A-TTATGTAAGTTATATAAGTTGTGTATAATGTAAGTCATGA
* * * *
45522961 AAGTTATGTATTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTCATGT
1 AAGCTATGTATTATGTAAGTTATATAAGTTGTGTATAATGTAAGTCATGA
*
45523011 AGGCTATGTATTATGTAAGTTATAATAAGT
1 AAGCTATGTATTATGTAAGTTAT-ATAAGT
45523041 AAGTTATGAA
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
50 57 0.80
51 6 0.08
52 8 0.11
ACGTcount: A:0.34, C:0.02, G:0.20, T:0.43
Consensus pattern (50 bp):
AAGCTATGTATTATGTAAGTTATATAAGTTGTGTATAATGTAAGTCATGA
Found at i:45523064 original size:34 final size:34
Alignment explanation
Indices: 45523025--45523101 Score: 97
Period size: 32 Copynumber: 2.3 Consensus size: 34
45523015 TATGTATTAT
45523025 GTAAGTTATA-ATAAGTAAGTTATGAAAGTTATATA
1 GTAAGTTATATAT-A-TAAGTTATGAAAGTTATATA
*
45523060 -TAAGTT-TATATATAAGTTATGTAAGTTATATA
1 GTAAGTTATATATATAAGTTATGAAAGTTATATA
45523092 TGTAAGTTAT
1 -GTAAGTTAT
45523102 GTGTTGTGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
32 19 0.51
33 3 0.08
34 14 0.38
35 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.43
Consensus pattern (34 bp):
GTAAGTTATATATATAAGTTATGAAAGTTATATA
Found at i:45523071 original size:10 final size:11
Alignment explanation
Indices: 45523050--45523092 Score: 54
Period size: 12 Copynumber: 4.0 Consensus size: 11
45523040 TAAGTTATGA
45523050 AAGTTATATAT
1 AAGTTATATAT
45523061 AAGTTTATATAT
1 AAG-TTATATAT
*
45523073 AAG-T-TATGT
1 AAGTTATATAT
45523082 AAGTTATATAT
1 AAGTTATATAT
45523093 GTAAGTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
11 7 0.26
12 11 0.41
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (11 bp):
AAGTTATATAT
Found at i:45523095 original size:13 final size:13
Alignment explanation
Indices: 45523077--45523101 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45523067 ATATATAAGT
45523077 TATGTAAGTTATA
1 TATGTAAGTTATA
45523090 TATGTAAGTTAT
1 TATGTAAGTTAT
45523102 GTGTTGTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TATGTAAGTTATA
Found at i:45523147 original size:52 final size:51
Alignment explanation
Indices: 45523021--45523468 Score: 163
Period size: 50 Copynumber: 8.5 Consensus size: 51
45523011 AGGCTATGTA
* * * *
45523021 TTATGTAAGTTATAATAAGTAAGTTATGAAAGTTATATATAAGTTTATATATAAG
1 TTATGTAAGTTAT-ATATGTAAGTTATG-TAG-T-TGTGTAAGTTTATATATAAG
*
45523076 TTATGTAAGTTATATATGTAAGTTATGT-GTTGTGTAAGTTTATATATAAATT
1 TTATGTAAGTTATATATGTAAGTTATGTAGTTGTGTAAGTTTATATAT-AA-G
*
45523128 TTAT-TCAAGTTATGA-ATGTAAGTTATGTAAGTTGTGT--G--TA-ATGTAAG
1 TTATGT-AAGTTAT-ATATGTAAGTTATGT-AGTTGTGTAAGTTTATATATAAG
* * *
45523175 TTATGT-A-TTATGTAAGTTGTTTAAGTTATTTAAGTTGTGT-A---T-TATGTAAG
1 TTATGTAAGTTATAT-A--TG--TAAGTTATGT-AGTTGTGTAAGTTTATATATAAG
* * * * *
45523225 TCATGTAGGCTATGTGTTATGTAAGTTATTATAAGTAAGTTGTGAAAGTTATATATAAGTTTATA
1 TTATGTAAG-T-TAT-ATATGTAAG---TTAT--GT-AGTTGTGTAAG---T-T-T-A---TATA
45523290 TATAAG
48 TA-A-G
* *
45523296 TTATGTAAGTTAT-TGTGTAAGTTATGT-GTTGTGTAAGTTTATATATAAATT
1 TTATGTAAGTTATATATGTAAGTTATGTAGTTGTGTAAGTTTATATAT-AA-G
* * *
45523347 TTATTTAAGTTATGTATGTAAGTTA--TA----TATAAGTTTATATATAAG
1 TTATGTAAGTTATATATGTAAGTTATGTAGTTGTGTAAGTTTATATATAAG
*
45523392 TTATGTAAGTTAT-TATGTAAGTTATGT-GTTGTGTAAGTTTATATATAAAT
1 TTATGTAAGTTATATATGTAAGTTATGTAGTTGTGTAAGTTTATATAT-AAG
* * * *
45523442 TTATATATGTTATGTATGTAAATTATG
1 TTATGTAAGTTATATATGTAAGTTATG
45523469 ATATGATTGA
Statistics
Matches: 308, Mismatches: 33, Indels: 108
0.69 0.07 0.24
Matches are distributed among these distances:
44 11 0.04
45 16 0.05
46 5 0.02
47 18 0.06
48 5 0.02
49 17 0.06
50 66 0.21
51 34 0.11
52 39 0.13
53 6 0.02
54 24 0.08
55 24 0.08
56 2 0.01
57 1 0.00
60 9 0.03
62 2 0.01
64 5 0.02
67 7 0.02
69 7 0.02
70 2 0.01
71 8 0.03
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (51 bp):
TTATGTAAGTTATATATGTAAGTTATGTAGTTGTGTAAGTTTATATATAAG
Found at i:45523231 original size:16 final size:16
Alignment explanation
Indices: 45523150--45523231 Score: 74
Period size: 16 Copynumber: 5.0 Consensus size: 16
45523140 TGAATGTAAG
* *
45523150 TTATGTAAGTTGTGTG
1 TTATGTAAGTTATGTA
*
45523166 TAATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
45523182 TTATGTAAGTTGTTTAA
1 TTATGTAAGTTATGT-A
* *
45523199 GTTATTTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
*
45523216 TTATGTAAGTCATGTA
1 TTATGTAAGTTATGTA
45523232 GGCTATGTGT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
16 38 0.72
17 2 0.04
18 13 0.25
ACGTcount: A:0.28, C:0.01, G:0.22, T:0.49
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:45523289 original size:32 final size:32
Alignment explanation
Indices: 45523253--45523446 Score: 117
Period size: 32 Copynumber: 6.2 Consensus size: 32
45523243 ATGTAAGTTA
*
45523253 TTATAAGTAAGTTGTGAAAGTTATATATAAGT
1 TTATAAGTAAGTTGTGTAAGTTATATATAAGT
* * *
45523285 TTATATA-TAAGTTATGTAAGTTATTGTGTAAG-
1 TTATA-AGTAAGTTGTGTAAGTTA-TATATAAGT
*
45523317 TTAT--GT--GTTGTGTAAGTTTATATATAAATT
1 TTATAAGTAAGTTGTGTAAG-TTATATAT-AAGT
* *
45523347 TTATTTAAGTTA-TGTATGTAAGTTATATATAAGT
1 TTA--TAAGTAAGT-TGTGTAAGTTATATATAAGT
* *
45523381 TTATATA-TAAGTTATGTAAGTTATTATGTAAG-
1 TTATA-AGTAAGTTGTGTAAGTTA-TATATAAGT
*
45523413 TTAT--GT--GTTGTGTAAGTTTATATATAAAT
1 TTATAAGTAAGTTGTGTAAG-TTATATATAAGT
45523442 TTATA
1 TTATA
45523447 TATGTTATGT
Statistics
Matches: 127, Mismatches: 15, Indels: 42
0.69 0.08 0.23
Matches are distributed among these distances:
28 27 0.21
29 12 0.09
30 5 0.04
32 43 0.34
33 16 0.13
34 8 0.06
35 9 0.07
36 7 0.06
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.48
Consensus pattern (32 bp):
TTATAAGTAAGTTGTGTAAGTTATATATAAGT
Found at i:45523291 original size:10 final size:11
Alignment explanation
Indices: 45523270--45523299 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
45523260 TAAGTTGTGA
45523270 AAGTTATATAT
1 AAGTTATATAT
45523281 AAGTTTATATAT
1 AAG-TTATATAT
45523293 AAGTTAT
1 AAGTTAT
45523300 GTAAGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (11 bp):
AAGTTATATAT
Found at i:45523305 original size:220 final size:219
Alignment explanation
Indices: 45522923--45523375 Score: 766
Period size: 220 Copynumber: 2.1 Consensus size: 219
45522913 TATGTAAGTT
45522923 ATGTAAGTTATATAAGTTGTGTATAATGTAAGTTATGAAAGTTATGTATTATGTAAGTTATTTAA
1 ATGTAAGTTATATAAGTTGTGTATAATGTAAGTTATGAAAGTTATGTATTATGTAAGTTATTTAA
45522988 GTTGTGTATTATGTAAGTCATGTAGGCTATGTATTATGTAAGTTATAATAAGTAAGTTATGAAAG
66 GTTGTGTATTATGTAAGTCATGTAGGCTATGTATTATGTAAGTTATAATAAGTAAGTTATGAAAG
45523053 TTATATATAAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTGTAAGTTTA
131 TTATATATAAGTTTATATATAAGTTATGTAAGTTAT-TATGTAAGTTATGTGTTGTGTAAGTTTA
45523118 TATATAAATTTTATTCAAGTTATGA
195 TATATAAATTTTATTCAAGTTATGA
* * * * *
45523143 ATGTAAGTTATGTAAGTTGTGTGTAATGTAAGTTATG-TA-TTATGTAAGTTGTTTAAGTTATTT
1 ATGTAAGTTATATAAGTTGTGTATAATGTAAGTTATGAAAGTTATGT-A-TTATGTAAGTTATTT
* * *
45523206 AAGTTGTGTATTATGTAAGTCATGTAGGCTATGTGTTATGTAAGTTATTATAAGTAAGTTGTGAA
64 AAGTTGTGTATTATGTAAGTCATGTAGGCTATGTATTATGTAAGTTATAATAAGTAAGTTATGAA
*
45523271 AGTTATATATAAGTTTATATATAAGTTATGTAAGTTATTGTGTAAGTTATGTGTTGTGTAAGTTT
129 AGTTATATATAAGTTTATATATAAGTTATGTAAGTTATTATGTAAGTTATGTGTTGTGTAAGTTT
* *
45523336 ATATATAAATTTTATTTAAGTTATGT
194 ATATATAAATTTTATTCAAGTTATGA
45523362 ATGTAAGTTATATA
1 ATGTAAGTTATATA
45523376 TAAGTTTATA
Statistics
Matches: 219, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
218 6 0.03
219 65 0.30
220 148 0.68
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46
Consensus pattern (219 bp):
ATGTAAGTTATATAAGTTGTGTATAATGTAAGTTATGAAAGTTATGTATTATGTAAGTTATTTAA
GTTGTGTATTATGTAAGTCATGTAGGCTATGTATTATGTAAGTTATAATAAGTAAGTTATGAAAG
TTATATATAAGTTTATATATAAGTTATGTAAGTTATTATGTAAGTTATGTGTTGTGTAAGTTTAT
ATATAAATTTTATTCAAGTTATGA
Found at i:45523306 original size:21 final size:21
Alignment explanation
Indices: 45523280--45523418 Score: 66
Period size: 21 Copynumber: 6.0 Consensus size: 21
45523270 AAGTTATATA
45523280 TAAGTTTATATATAAGTTATG
1 TAAGTTTATATATAAGTTATG
* *
45523301 TAAG-TTATTGTGTAAGTTATGTGTTG
1 TAAGTTTA-TATATAAGTTA-----TG
* *
45523327 TGTAAGTTTATATATAAATTTTATT
1 --TAAGTTTATATAT-AA-GTTATG
* * *
45523352 TAAGTTATGTATGTAAGTTATATA
1 TAAGTT-TATATATAAG-T-TATG
45523376 TAAGTTTATATATAAGTTATG
1 TAAGTTTATATATAAGTTATG
*
45523397 TAAG-TTATTATGTAAGTTATG
1 TAAGTTTA-TATATAAGTTATG
45523418 T
1 T
45523419 GTTGTGTAAG
Statistics
Matches: 89, Mismatches: 14, Indels: 30
0.67 0.11 0.23
Matches are distributed among these distances:
20 6 0.07
21 33 0.37
22 1 0.01
23 17 0.19
24 14 0.16
25 1 0.01
26 2 0.02
28 7 0.08
29 5 0.06
30 3 0.03
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.50
Consensus pattern (21 bp):
TAAGTTTATATATAAGTTATG
Found at i:45523340 original size:49 final size:49
Alignment explanation
Indices: 45523280--45523468 Score: 217
Period size: 49 Copynumber: 3.9 Consensus size: 49
45523270 AAGTTATATA
*
45523280 TAAGTTTATATATAAGTTATGTAAGTTATTGTGTAAGTTATGTGTTGTG
1 TAAGTTTATATATAAGTTATGTAAGTTATTATGTAAGTTATGTGTTGTG
* * * *
45523329 TAAGTTTATATATAAATTTTATTTAAGTTATGTATGTAAGTTA-----TATA
1 TAAGTTTATATAT-AA-GTTATGTAAGTTAT-TATGTAAGTTATGTGTTGTG
45523376 TAAGTTTATATATAAGTTATGTAAGTTATTATGTAAGTTATGTGTTGTG
1 TAAGTTTATATATAAGTTATGTAAGTTATTATGTAAGTTATGTGTTGTG
* * * *
45523425 TAAGTTTATATATAAATTTATATATGTTATGTATGTAAATTATG
1 TAAGTTTATATAT-AAGTTATGTAAGTTAT-TATGTAAGTTATG
45523469 ATATGATTGA
Statistics
Matches: 117, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.09
45 12 0.10
46 2 0.02
47 15 0.13
49 28 0.24
50 15 0.13
51 24 0.21
52 10 0.09
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (49 bp):
TAAGTTTATATATAAGTTATGTAAGTTATTATGTAAGTTATGTGTTGTG
Found at i:45523356 original size:96 final size:97
Alignment explanation
Indices: 45523250--45523472 Score: 339
Period size: 96 Copynumber: 2.3 Consensus size: 97
45523240 GTTATGTAAG
*
45523250 TTATTATAAG-TAAGT-TGTGAAAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATTGTG
1 TTATTATAAGTTAAGTATGT--AAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATTATG
45523313 TAAGTTATGTGTTGTGTAAGTTTATATATAAATT
64 TAAGTTATGTGTTGTGTAAGTTTATATATAAATT
*
45523347 TTATT-TAAGTTATGTATGTAAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATTATGTA
1 TTATTATAAGTTAAGTATGTAAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATTATGTA
45523411 AGTTATGTGTTGTGTAAGTTTATATATAAA-T
66 AGTTATGTGTTGTGTAAGTTTATATATAAATT
* * *
45523442 TTA-TATATGTTATGTATGTAAATTATGATAT
1 TTATTATAAGTTAAGTATGTAAGTTAT-ATAT
45523473 GATTGATAAA
Statistics
Matches: 118, Mismatches: 4, Indels: 9
0.90 0.03 0.07
Matches are distributed among these distances:
94 1 0.01
95 23 0.19
96 82 0.69
97 9 0.08
98 3 0.03
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (97 bp):
TTATTATAAGTTAAGTATGTAAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATTATGTA
AGTTATGTGTTGTGTAAGTTTATATATAAATT
Found at i:45523392 original size:36 final size:36
Alignment explanation
Indices: 45523327--45523398 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
45523317 TTATGTGTTG
*
45523327 TGTAAGTTTATATATAAATTTTATTTAAGTTATGTA
1 TGTAAGTTTATATATAAATTTTATATAAGTTATGTA
*
45523363 TGTAAG-TTATATATAAGTTTATATATAAGTTATGTA
1 TGTAAGTTTATATATAAATTT-TATATAAGTTATGTA
45523399 AGTTATTATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 13 0.39
36 20 0.61
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (36 bp):
TGTAAGTTTATATATAAATTTTATATAAGTTATGTA
Found at i:45523407 original size:12 final size:12
Alignment explanation
Indices: 45523296--45523416 Score: 67
Period size: 12 Copynumber: 10.1 Consensus size: 12
45523286 TATATATAAG
45523296 TTATGTAAGTTA
1 TTATGTAAGTTA
*
45523308 TTGTGTAAGTTA
1 TTATGTAAGTTA
*
45523320 TGTGTTGTGTAAGTT-
1 ----TTATGTAAGTTA
* *
45523335 TATATATAAATT-
1 T-TATGTAAGTTA
*
45523347 TTATTTAAGTTA
1 TTATGTAAGTTA
45523359 TGTATGTAAGTTA
1 T-TATGTAAGTTA
*
45523372 -TATATAAGTT-
1 TTATGTAAGTTA
*
45523382 TATATATAAG---
1 T-TATGTAAGTTA
45523392 TTATGTAAGTTA
1 TTATGTAAGTTA
45523404 TTATGTAAGTTA
1 TTATGTAAGTTA
45523416 T
1 T
45523417 GTGTTGTGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 24
0.73 0.07 0.20
Matches are distributed among these distances:
9 7 0.08
10 1 0.01
11 18 0.20
12 41 0.47
13 10 0.11
16 11 0.12
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (12 bp):
TTATGTAAGTTA
Found at i:45523517 original size:19 final size:19
Alignment explanation
Indices: 45523478--45523522 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
45523468 GATATGATTG
*
45523478 ATAAATTTTTCAAATATAT
1 ATAAAATTTTCAAATATAT
45523497 ATAAAATTTT-AATATATAT
1 ATAAAATTTTCAA-ATATAT
45523516 ATTAAAA
1 A-TAAAA
45523523 CTGTATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 2 0.09
19 16 0.70
20 5 0.22
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
ATAAAATTTTCAAATATAT
Found at i:45523517 original size:21 final size:22
Alignment explanation
Indices: 45523489--45523541 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
45523479 TAAATTTTTC
* *
45523489 AAATATATATAAAATTTTA-AT
1 AAATATATATAAAACTGTATAT
*
45523510 ATATATAT-TAAAACTGTATAT
1 AAATATATATAAAACTGTATAT
45523531 AAATATATATA
1 AAATATATATA
45523542 TCAAAGATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 8 0.31
21 16 0.62
22 2 0.08
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
AAATATATATAAAACTGTATAT
Found at i:45526233 original size:21 final size:21
Alignment explanation
Indices: 45526167--45526233 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 21
45526157 TATGTTTCAT
45526167 TAAAA-TTTTAAGTAAATAATTA
1 TAAAAGTTTTAAGT-AA-AATTA
* *
45526189 TTAAAGTTTTAAGTAATATT-
1 TAAAAGTTTTAAGTAAAATTA
*
45526209 TAAAAGTTTT-TGATAAAATTA
1 TAAAAGTTTTAAG-TAAAATTA
45526230 TAAA
1 TAAA
45526234 TTTTAGTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.03
20 15 0.41
21 7 0.19
22 6 0.16
23 8 0.22
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.43
Consensus pattern (21 bp):
TAAAAGTTTTAAGTAAAATTA
Found at i:45526256 original size:10 final size:10
Alignment explanation
Indices: 45526240--45526282 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
45526230 TAAATTTTAG
45526240 TTTTTTAT-T
1 TTTTTTATAT
45526249 TCTTTTTATAT
1 T-TTTTTATAT
45526260 TTTTTTATAT
1 TTTTTTATAT
*
45526270 TTTCTTATAT
1 TTTTTTATAT
45526280 TTT
1 TTT
45526283 GGTCCTGTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
9 1 0.03
10 28 0.90
11 2 0.06
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTTATAT
Found at i:45526929 original size:7 final size:7
Alignment explanation
Indices: 45526917--45527000 Score: 71
Period size: 7 Copynumber: 11.4 Consensus size: 7
45526907 TACCTTTGAC
45526917 ACCCTAA
1 ACCCTAA
45526924 ACCCTAA
1 ACCCTAA
45526931 ACCCCTAA
1 A-CCCTAA
*
45526939 CCCCTAA
1 ACCCTAA
*
45526946 ACCTTAA
1 ACCCTAA
45526953 ATCCACTAA
1 A-CC-CTAA
*
45526962 ACTCTTAA
1 AC-CCTAA
45526970 ACCCTAA
1 ACCCTAA
*
45526977 CCCCTAA
1 ACCCTAA
*
45526984 TCCCT-A
1 ACCCTAA
45526990 ACCCTTAA
1 ACCC-TAA
45526998 ACC
1 ACC
45527001 TCAATTCCAA
Statistics
Matches: 62, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
6 4 0.06
7 35 0.56
8 18 0.29
9 5 0.08
ACGTcount: A:0.37, C:0.43, G:0.00, T:0.20
Consensus pattern (7 bp):
ACCCTAA
Found at i:45527154 original size:21 final size:21
Alignment explanation
Indices: 45527125--45527167 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
45527115 GATCCCAAAT
* *
45527125 CTTTAAACCCTAAATCACTAA
1 CTTTAAACCCCAAACCACTAA
*
45527146 CTTTTAACCCCAAACCACTAA
1 CTTTAAACCCCAAACCACTAA
45527167 C
1 C
45527168 CACTAACCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.26
Consensus pattern (21 bp):
CTTTAAACCCCAAACCACTAA
Found at i:45527243 original size:70 final size:70
Alignment explanation
Indices: 45527164--45527301 Score: 249
Period size: 70 Copynumber: 2.0 Consensus size: 70
45527154 CCCAAACCAC
* *
45527164 TAACCACTAACCCTTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTA
1 TAACCACTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTA
45527229 AACCT
66 AACCT
*
45527234 TAACCACTAACCCCTAAACATTATTTAATATATAAATTAAAATACACTAATTAATCTAAACCCTA
1 TAACCACTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTA
45527299 AAC
66 AAC
45527302 TCTAACCTAA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (70 bp):
TAACCACTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTA
AACCT
Found at i:45527362 original size:14 final size:14
Alignment explanation
Indices: 45527345--45527375 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
45527335 TCCTAACTTT
*
45527345 TAACCTCTAACCCA
1 TAACCACTAACCCA
45527359 TAACCACTAACCCA
1 TAACCACTAACCCA
45527373 TAA
1 TAA
45527376 ACCTTAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.39, G:0.00, T:0.19
Consensus pattern (14 bp):
TAACCACTAACCCA
Found at i:45528717 original size:2 final size:2
Alignment explanation
Indices: 45528710--45528742 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
45528700 GGTTTTCTTT
45528710 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45528743 TTGTTGAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45536007 original size:319 final size:314
Alignment explanation
Indices: 45535257--45536131 Score: 1428
Period size: 319 Copynumber: 2.8 Consensus size: 314
45535247 TAAATTTAAA
45535257 AAGCAATGGCTTCGCCCGGACTCGAACCGAAGACCTTTAGTGTGTTAGACTGACGTGATAACCAA
1 AAGCAATGGCTTCGCCCGGACTCGAACCG-AGACCTTTAGTGTGTTAGACTGACGTGATAACCAA
* * *
45535322 CTACACCACGAAACCAGAGTCAATAGTTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTAC
65 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
*
45535387 AGAAACTAAAAGACTAAAAATATGTTTGAAGAAATGGCTTCGCCCGGACTCAAACCGGAGACCTT
130 AGAAACTAAAAGACTAAAAATATGTTTGAAGAAATGGCTTCGCCCGG-CTCGAACCGGAGACCTT
* *
45535452 CAGTGTGTTAGATTGACGTGATAACCAACTACACCACGAAACCAGAGTCAATGGCTTTTGACATT
194 CAGTGTGTTAGACTGACGTGATAACCAACTACACCACGAAACCAGAGTCAATGACTTTTGACATT
*
45535517 TAATTTTAGTCAAAAAACTAAAATGTACAGAAACTAAAAGACTAAAAATTTGTTTG
259 TAATTTTAGTCAAAAAACTAAAATGCACAGAAACTAAAAGACTAAAAATTTGTTTG
*
45535573 AAGCAATGGCTTCGCCCGGACTCGAATCGGAGACCTTTAGTGTGTTAGACTGACGTGATAACCAA
1 AAGCAATGGCTTCGCCCGGACTCGAA-CCGAGACCTTTAGTGTGTTAGACTGACGTGATAACCAA
* *
45535638 CTACACCACGAAGCCAGAGTCGATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
65 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
* * * * *
45535703 AGAAACTAAAAGACTAAAAAATATGTTTAAAAAAAAGGCTTGGCCCTGGCTCGAGCCGGAGACCT
130 AGAAACTAAAAGACT-AAAAATATGTTTGAAGAAATGGCTTCGCCC-GGCTCGAACCGGAGACCT
*
45535768 TCAGTGTGTTAGACTGACGTGATAACCAACTACACCAC-AAAGCCGGAGTCAATGACTTTTGACA
193 TCAGTGTGTTAGACTGACGTGATAACCAACTACACCACGAAA-CCAGAGTCAATGACTTTTGACA
*
45535832 TTTAATTTTAGTCAAAAAACTAAAATGCGCAGAAACTAAAAAGACTAAAAATTATGTTTG
257 TTTAATTTTAGTCAAAAAACTAAAATGCACAGAAACT-AAAAGACTAAAAATT-TGTTTG
*
45535892 AAGCAATGGCTTCGCCCGGACTCGAACCAGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAA
1 AAGCAATGGCTTCGCCCGGACTCGAACC-GAGACCTTTAGTGTGTTAGACTGACGTGATAACCAA
*
45535957 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGCGC
65 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
* * * *
45536022 ATAAACTAAAAAGACTAAAATTATGTTTGAAGCAATGGCTTCGCCCAGACTCGAACCGGAGACCT
130 AGAAACT-AAAAGACTAAAAATATGTTTGAAGAAATGGCTTCGCCC-GGCTCGAACCGGAGACCT
*
45536087 TCAGTGTGTTAGACTAACGTGATAACCAACTACACCACGAAACCA
193 TCAGTGTGTTAGACTGACGTGATAACCAACTACACCACGAAACCA
45536132 CATTGATAAG
Statistics
Matches: 516, Mismatches: 34, Indels: 15
0.91 0.06 0.03
Matches are distributed among these distances:
316 139 0.27
317 134 0.26
318 18 0.03
319 214 0.41
320 11 0.02
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (314 bp):
AAGCAATGGCTTCGCCCGGACTCGAACCGAGACCTTTAGTGTGTTAGACTGACGTGATAACCAAC
TACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGCA
GAAACTAAAAGACTAAAAATATGTTTGAAGAAATGGCTTCGCCCGGCTCGAACCGGAGACCTTCA
GTGTGTTAGACTGACGTGATAACCAACTACACCACGAAACCAGAGTCAATGACTTTTGACATTTA
ATTTTAGTCAAAAAACTAAAATGCACAGAAACTAAAAGACTAAAAATTTGTTTG
Found at i:45536160 original size:159 final size:159
Alignment explanation
Indices: 45535257--45536131 Score: 1427
Period size: 158 Copynumber: 5.5 Consensus size: 159
45535247 TAAATTTAAA
* *
45535257 AAGCAATGGCTTCGCCCGGACTCGAACCGAAGACCTTTAGTGTGTTAGACTGACGTGATAACCAA
1 AAGCAATGGCTTCGCCCGGACTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAA
* * *
45535322 CTACACCACGAAACCAGAGTCAATAGTTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTAC
66 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
45535387 AGAAACTAAAAGACTAAAAA-TATGTTTG
131 AGAAACTAAAAGACTAAAAATTATGTTTG
* * *
45535415 AAGAAATGGCTTCGCCCGGACTCAAACCGGAGACCTTCAGTGTGTTAGATTGACGTGATAACCAA
1 AAGCAATGGCTTCGCCCGGACTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAA
*
45535480 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTAC
66 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
45535545 AGAAACTAAAAGACTAAAAATT-TGTTTG
131 AGAAACTAAAAGACTAAAAATTATGTTTG
* *
45535573 AAGCAATGGCTTCGCCCGGACTCGAATCGGAGACCTTTAGTGTGTTAGACTGACGTGATAACCAA
1 AAGCAATGGCTTCGCCCGGACTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAA
* *
45535638 CTACACCACGAAGCCAGAGTCGATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
66 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
* *
45535703 AGAAACTAAAAGACTAAAAAATATGTTTA
131 AGAAACTAAAAGACTAAAAATTATGTTTG
** * * *
45535732 AAAAAAAGGCTTGGCCCTGG-CTCGAGCCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCA
1 AAGCAATGGCTTCGCCC-GGACTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCA
* * *
45535796 ACTACACCAC-AAAGCCGGAGTCAATGACTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGC
65 ACTACACCACGAAA-CCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGT
45535860 GCAGAAACTAAAAAGACTAAAAATTATGTTTG
129 GCAGAAACT-AAAAGACTAAAAATTATGTTTG
*
45535892 AAGCAATGGCTTCGCCCGGACTCGAACCAGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAA
1 AAGCAATGGCTTCGCCCGGACTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAA
*
45535957 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGCGC
66 CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
*
45536022 ATAAACTAAAAAGACT-AAAATTATGTTTG
131 AGAAACT-AAAAGACTAAAAATTATGTTTG
* *
45536051 AAGCAATGGCTTCGCCCAGACTCGAACCGGAGACCTTCAGTGTGTTAGACTAACGTGATAACCAA
1 AAGCAATGGCTTCGCCCGGACTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAA
45536116 CTACACCACGAAACCA
66 CTACACCACGAAACCA
45536132 CATTGATAAG
Statistics
Matches: 667, Mismatches: 43, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
158 294 0.44
159 218 0.33
160 152 0.23
161 3 0.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (159 bp):
AAGCAATGGCTTCGCCCGGACTCGAACCGGAGACCTTCAGTGTGTTAGACTGACGTGATAACCAA
CTACACCACGAAACCAGAGTCAATGGCTTTTGACATTTAATTTTAGTCAAAAAACTAAAATGTGC
AGAAACTAAAAGACTAAAAATTATGTTTG
Found at i:45538109 original size:20 final size:18
Alignment explanation
Indices: 45538086--45538124 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
45538076 TATTTTTTTA
*
45538086 ATTATTTTAATTTATAATAT
1 ATTA-TTTAATATA-AATAT
45538106 ATTATTTAATATAAATAT
1 ATTATTTAATATAAATAT
45538124 A
1 A
45538125 ATTTCAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATTTAATATAAATAT
Found at i:45543011 original size:26 final size:27
Alignment explanation
Indices: 45542982--45543042 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
45542972 TTTTACCTTA
45542982 GTAAAATTTTTGACAATTTT-ACCCCG
1 GTAAAATTTTTGACAATTTTAACCCCG
* *
45543008 GTAAAA-TTTTGACAATTTTAATCCTG
1 GTAAAATTTTTGACAATTTTAACCCCG
45543034 GTAAAATTT
1 GTAAAATTT
45543043 CAAGAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 13 0.42
26 16 0.52
27 2 0.06
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.41
Consensus pattern (27 bp):
GTAAAATTTTTGACAATTTTAACCCCG
Found at i:45545414 original size:25 final size:24
Alignment explanation
Indices: 45545379--45545445 Score: 71
Period size: 25 Copynumber: 2.8 Consensus size: 24
45545369 CATACATGTA
* *
45545379 CATAAATGGAAAGCTCATGTGAGC
1 CATAAACGGAAAGCTCATGAGAGC
**
45545403 CATGAAACGGAAAGCTCCGGAGAGC
1 CAT-AAACGGAAAGCTCATGAGAGC
* *
45545428 CATTAACGGGAAGCTCAT
1 CATAAACGGAAAGCTCAT
45545446 ACGAGCTAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
24 14 0.41
25 20 0.59
ACGTcount: A:0.36, C:0.21, G:0.27, T:0.16
Consensus pattern (24 bp):
CATAAACGGAAAGCTCATGAGAGC
Found at i:45552155 original size:54 final size:55
Alignment explanation
Indices: 45552093--45552197 Score: 151
Period size: 55 Copynumber: 1.9 Consensus size: 55
45552083 TTTAAAATTT
45552093 TTAAAAAATAATATTTTATTTT-GTAGAGCCATT-TTAAATGGCGCCACCACTTTA
1 TTAAAAAATAATATTTTATTTTGGTAGAGCCATTCTT-AATGGCGCCACCACTTTA
* * * *
45552147 TTAAAAAATGATATTTTATTTTGGTAGAGTCATTCTTTATGGCTCCACCAC
1 TTAAAAAATAATATTTTATTTTGGTAGAGCCATTCTTAATGGCGCCACCAC
45552198 CTTGGTTGTC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
54 21 0.47
55 22 0.49
56 2 0.04
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.40
Consensus pattern (55 bp):
TTAAAAAATAATATTTTATTTTGGTAGAGCCATTCTTAATGGCGCCACCACTTTA
Found at i:45552587 original size:217 final size:219
Alignment explanation
Indices: 45552178--45552605 Score: 779
Period size: 219 Copynumber: 2.0 Consensus size: 219
45552168 TGGTAGAGTC
45552178 ATTCTTTATGGCTCCACCACCTTGGTTGTCCTACATATATAGATATATTGAAGCATTTTTGTAAT
1 ATTCTTTATGGCTCCACCACCTTGGTTGTCCTACATATATAGATATATTGAAGCATTTTTGTAAT
45552243 AGATGAACTAGAAGAGAAGAAAAAAAAAGAAATTGTTGTGTTTAGTAGGAAAGCTAAAAAATTTT
66 AGATGAACTAGAAGAGAAGAAAAAAAAAGAAATTGTTGTGTTTAGTAGGAAAGCTAAAAAATTTT
*
45552308 GTTGAAGATAAATAACGTAGTGTTTTAGGTGTACATTCTTTTTTTATGGTGAAATTGTAGAAGGT
131 GTTGAAGATAAATAACGAAGTGTTTTAGGTGTACATTCTTTTTTTATGGTGAAATTGTAGAAGGT
*
45552373 GTTGTTAGTTGTGTACGCTCAAAA
196 GTTGTTAGTTGCGTACGCTCAAAA
*
45552397 ATTCTTTATGGCTCCACCACCTTGGTTGTCCTATATATATAGATATATTGAAGCATTTTTGTAAT
1 ATTCTTTATGGCTCCACCACCTTGGTTGTCCTACATATATAGATATATTGAAGCATTTTTGTAAT
* * *
45552462 AGATGAACTAGAAGAGAAG-AAAAAAAAGAAATTTTTGTGTTTAGTAGGAGAGCTCAAAAA-TTT
66 AGATGAACTAGAAGAGAAGAAAAAAAAAGAAATTGTTGTGTTTAGTAGGAAAGCTAAAAAATTTT
*
45552525 GTTGAAGATAAATAACGAAGTGTTTTAGGTGTACGTTCTTTTTTTATGGTGAAATTGTAGAAGGT
131 GTTGAAGATAAATAACGAAGTGTTTTAGGTGTACATTCTTTTTTTATGGTGAAATTGTAGAAGGT
45552590 GTTGTTAGTTGCGTAC
196 GTTGTTAGTTGCGTAC
45552606 TTCAAGGTCA
Statistics
Matches: 202, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
217 81 0.40
218 38 0.19
219 83 0.41
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.36
Consensus pattern (219 bp):
ATTCTTTATGGCTCCACCACCTTGGTTGTCCTACATATATAGATATATTGAAGCATTTTTGTAAT
AGATGAACTAGAAGAGAAGAAAAAAAAAGAAATTGTTGTGTTTAGTAGGAAAGCTAAAAAATTTT
GTTGAAGATAAATAACGAAGTGTTTTAGGTGTACATTCTTTTTTTATGGTGAAATTGTAGAAGGT
GTTGTTAGTTGCGTACGCTCAAAA
Found at i:45555443 original size:14 final size:14
Alignment explanation
Indices: 45555426--45555453 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45555416 AACGAAAATA
45555426 AGAATAAGAAAAAG
1 AGAATAAGAAAAAG
45555440 AGAATAAGAAAAAG
1 AGAATAAGAAAAAG
45555454 TGGTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (14 bp):
AGAATAAGAAAAAG
Found at i:45558494 original size:21 final size:21
Alignment explanation
Indices: 45558468--45558510 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
45558458 CAAAACTTAC
* *
45558468 CATAAGGGTGGATAACCACAT
1 CATAAGGGCGGACAACCACAT
*
45558489 CATAAGGGCGGACAATCACAT
1 CATAAGGGCGGACAACCACAT
45558510 C
1 C
45558511 TTACCATACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (21 bp):
CATAAGGGCGGACAACCACAT
Found at i:45561049 original size:44 final size:45
Alignment explanation
Indices: 45560999--45561092 Score: 172
Period size: 44 Copynumber: 2.1 Consensus size: 45
45560989 TAAAACCCTT
*
45560999 GTCTACCCAAACCCAATTACCATTTACCAACCCAAT-AAACTAAA
1 GTCTACCCAAACCCAACTACCATTTACCAACCCAATAAAACTAAA
45561043 GTCTACCCAAACCCAACTACCATTTACCAACCCAATAAAACTAAA
1 GTCTACCCAAACCCAACTACCATTTACCAACCCAATAAAACTAAA
45561088 GTCTA
1 GTCTA
45561093 AAACTAAAGT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 35 0.73
45 13 0.27
ACGTcount: A:0.43, C:0.34, G:0.03, T:0.20
Consensus pattern (45 bp):
GTCTACCCAAACCCAACTACCATTTACCAACCCAATAAAACTAAA
Found at i:45561096 original size:13 final size:13
Alignment explanation
Indices: 45561078--45561106 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
45561068 ACCAACCCAA
45561078 TAAAACTAAAGTC
1 TAAAACTAAAGTC
45561091 TAAAACTAAAGTC
1 TAAAACTAAAGTC
45561104 TAA
1 TAA
45561107 GTCTCTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.07, T:0.24
Consensus pattern (13 bp):
TAAAACTAAAGTC
Found at i:45564705 original size:20 final size:20
Alignment explanation
Indices: 45564680--45564745 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 20
45564670 ATGTTTTTAA
*
45564680 TTATGTAGTGATTCAAAGAC
1 TTATGTAATGATTCAAAGAC
***
45564700 TTATGTAAT-ATTTTTA-A-
1 TTATGTAATGATTCAAAGAC
*
45564717 TTATGTATTGATTCAAAGAC
1 TTATGTAATGATTCAAAGAC
45564737 TTATGTAAT
1 TTATGTAAT
45564746 TTTTTTAATT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 8 0.24
18 5 0.15
19 5 0.15
20 16 0.47
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (20 bp):
TTATGTAATGATTCAAAGAC
Found at i:45564714 original size:37 final size:37
Alignment explanation
Indices: 45564658--45564769 Score: 188
Period size: 37 Copynumber: 3.0 Consensus size: 37
45564648 TGTTAATTTC
* *
45564658 AAGACTTATCTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
*
45564695 AAGACTTATGTAATATTTTTAATTATGTATTGATTCA
1 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
*
45564732 AAGACTTATGTAATTTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
45564769 A
1 A
45564770 TTCGGTTAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.47
Consensus pattern (37 bp):
AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
Found at i:45564722 original size:17 final size:17
Alignment explanation
Indices: 45564700--45564760 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
45564690 ATTCAAAGAC
45564700 TTATGTAATATTTTTAA
1 TTATGTAATATTTTTAA
* ***
45564717 TTATGTATTGATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
*
45564736 CTTATGTAATTTTTTTAA
1 -TTATGTAATATTTTTAA
45564754 TTATGTA
1 TTATGTA
45564761 GTGATTCAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 15 0.47
18 5 0.16
19 4 0.12
20 8 0.25
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:45564853 original size:9 final size:9
Alignment explanation
Indices: 45564771--45564850 Score: 124
Period size: 9 Copynumber: 8.9 Consensus size: 9
45564761 GTGATTCAAT
45564771 TCGGTTAAA
1 TCGGTTAAA
45564780 TCGGTTAAA
1 TCGGTTAAA
*
45564789 TCGGTTAAG
1 TCGGTTAAA
45564798 TCGGTTAAA
1 TCGGTTAAA
*
45564807 TCAGTTAAA
1 TCGGTTAAA
45564816 TCGGTTAAA
1 TCGGTTAAA
*
45564825 TTGGTTAAA
1 TCGGTTAAA
*
45564834 TCGGTTAAG
1 TCGGTTAAA
45564843 TCGGTTAA
1 TCGGTTAA
45564851 GTCAGTGAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 64 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (9 bp):
TCGGTTAAA
Found at i:45565035 original size:12 final size:12
Alignment explanation
Indices: 45565018--45565042 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45565008 AGCCATATCG
45565018 GGTCGGTTAACC
1 GGTCGGTTAACC
45565030 GGTCGGTTAACC
1 GGTCGGTTAACC
45565042 G
1 G
45565043 AATGCACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:45573738 original size:19 final size:21
Alignment explanation
Indices: 45573697--45573738 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
45573687 AATTATGACC
*
45573697 TATAATTATTTCTTTACAATT
1 TATAATGATTTCTTTACAATT
45573718 TATAATGATTT-TTTA-AATT
1 TATAATGATTTCTTTACAATT
45573737 TA
1 TA
45573739 GAACAGGGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 4 0.20
21 10 0.50
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (21 bp):
TATAATGATTTCTTTACAATT
Found at i:45574470 original size:23 final size:23
Alignment explanation
Indices: 45574444--45574541 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
45574434 ATAAGTGCCA
45574444 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
45574467 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
45574490 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
45574512 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
45574535 CACTGAT
1 CACTGAT
45574542 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:45574509 original size:45 final size:45
Alignment explanation
Indices: 45574451--45574539 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
45574441 CCACACTGAT
* *
45574451 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
45574496 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
45574540 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:45581831 original size:23 final size:23
Alignment explanation
Indices: 45581805--45581902 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
45581795 CATAAGTGCA
45581805 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
45581828 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
45581851 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
45581873 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
45581896 CACTGAT
1 CACTGAT
45581903 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:45581870 original size:45 final size:45
Alignment explanation
Indices: 45581812--45581900 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
45581802 GCACACTGAT
* *
45581812 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
45581857 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
45581901 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:45584500 original size:14 final size:14
Alignment explanation
Indices: 45584481--45584511 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
45584471 AGCTTGGCAA
45584481 TTGGGAACTATTTG
1 TTGGGAACTATTTG
45584495 TTGGGAACTATTTG
1 TTGGGAACTATTTG
45584509 TTG
1 TTG
45584512 TTAATATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.29, T:0.45
Consensus pattern (14 bp):
TTGGGAACTATTTG
Found at i:45584790 original size:12 final size:12
Alignment explanation
Indices: 45584770--45584799 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
45584760 TATGGTTAAT
*
45584770 TTCTTTAGCAGC
1 TTCTGTAGCAGC
45584782 TTCTGTAGCAGC
1 TTCTGTAGCAGC
45584794 TTCTGT
1 TTCTGT
45584800 TGTTTGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.43
Consensus pattern (12 bp):
TTCTGTAGCAGC
Found at i:45585445 original size:91 final size:91
Alignment explanation
Indices: 45585313--45585520 Score: 265
Period size: 91 Copynumber: 2.3 Consensus size: 91
45585303 TTGATTTTAG
* * *
45585313 TAAATTCATAGAAGAACATTTTATTATTAACAATTTCATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATAAAAGAA-AATTTATTATCAACAATTTCATGAAATTATATATCACTATTAAATTAT
* *
45585378 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* * * * * *
45585405 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTTTATATTATTATTAAATTATA
1 TAAATTCATAAAAGAAAATTTATTATCAACAATTTCATGAAATTATATATCACTATTAAATTATA
45585470 TGTAATAATTATTATTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * *
45585496 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATAAAAGAAAATTTATTA
45585521 GTTATAATTA
Statistics
Matches: 101, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
91 83 0.82
92 18 0.18
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATAAAAGAAAATTTATTATCAACAATTTCATGAAATTATATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:45585569 original size:16 final size:17
Alignment explanation
Indices: 45585550--45585581 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
45585540 TTATTAAATC
45585550 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
45585566 ATATATTTAATATTAA
1 ATATATTTAATATTAA
45585582 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:45585645 original size:66 final size:63
Alignment explanation
Indices: 45585574--45585786 Score: 194
Period size: 61 Copynumber: 3.4 Consensus size: 63
45585564 AAATATATTT
45585574 AATATTAATTATTTAA-AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
45585638 AG
62 AG
* * * * * * *
45585640 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
45585700 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
45585760 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAAGAATTTTATTAA
45585787 ATTATATATT
Statistics
Matches: 113, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 30 0.27
60 14 0.12
61 31 0.27
62 5 0.04
63 2 0.02
64 3 0.03
65 4 0.04
66 18 0.16
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (63 bp):
AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:45585660 original size:120 final size:120
Alignment explanation
Indices: 45585536--45585828 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
45585526 AATTATTTTA
* * *
45585536 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
45585599 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
45585656 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
45585721 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
45585776 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
45585829 TAAATATGAT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.02
120 155 0.96
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:45585688 original size:18 final size:17
Alignment explanation
Indices: 45585657--45585691 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45585647 ATTATTAAGA
45585657 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
45585674 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
45585692 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:45585805 original size:18 final size:17
Alignment explanation
Indices: 45585777--45585811 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45585767 ATTATTAAGA
*
45585777 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45585794 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45585812 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45585925 original size:147 final size:149
Alignment explanation
Indices: 45585765--45586039 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
45585755 ATAAGAATAT
*
45585765 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
45585830 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
45585893 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
45585912 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
45585977 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
45586040 CAATAATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 91 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:45585952 original size:18 final size:17
Alignment explanation
Indices: 45585924--45585958 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45585914 ATTATTAAGA
*
45585924 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45585941 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45585959 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45586213 original size:45 final size:44
Alignment explanation
Indices: 45586117--45586214 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
45586107 CTATTACACC
*
45586117 TCTATTACATTCAACCAAACACAGTTTTACTATTACACCTCGAT
1 TCTATTACATTCAACCAAACACAGATTTACTATTACACCTCGAT
* * ** * *
45586161 TCCATTACATTCAACCAAATAGTTGATTTGCTATTACACCTCTAT
1 TCTATTACATTCAACCAAACA-CAGATTTACTATTACACCTCGAT
45586206 TCTATTACA
1 TCTATTACA
45586215 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 19 0.42
45 26 0.58
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.37
Consensus pattern (44 bp):
TCTATTACATTCAACCAAACACAGATTTACTATTACACCTCGAT
Found at i:45586240 original size:16 final size:16
Alignment explanation
Indices: 45586195--45586246 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
45586185 GATTTGCTAT
* * *
45586195 TACACCTCTATTCTAT
1 TACACCTCTAATCCAA
45586211 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
45586227 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
45586243 TACA
1 TACA
45586247 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:45586357 original size:34 final size:33
Alignment explanation
Indices: 45586317--45586468 Score: 147
Period size: 34 Copynumber: 4.7 Consensus size: 33
45586307 AATAAATCAA
45586317 GGTTTAGAGTTTTTTTAAAAAA-TAATTAAATTAG
1 GGTTTAGAG--TTTTTAAAAAATTAATTAAATTAG
* * *
45586351 GTTTTAG-GGTTTT---AAATAAATTAAATTAG
1 GGTTTAGAGTTTTTAAAAAATTAATTAAATTAG
**
45586380 ATTTTAGAG-TTTTAAATAAATTAATTAAATTAG
1 GGTTTAGAGTTTTTAAA-AAATTAATTAAATTAG
*
45586413 GGTTTAGAGTGTTTAAGAAAATTAATTAAATTAG
1 GGTTTAGAGTTTTTAA-AAAATTAATTAAATTAG
*
45586447 GGTTTAG-TTTTTTAAAATAATT
1 GGTTTAGAGTTTTTAAAA-AATT
45586469 TTGTGTTTAG
Statistics
Matches: 99, Mismatches: 10, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
28 3 0.03
29 21 0.21
30 1 0.01
31 4 0.04
32 2 0.02
33 33 0.33
34 34 0.34
35 1 0.01
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (33 bp):
GGTTTAGAGTTTTTAAAAAATTAATTAAATTAG
Done.