Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 151 of 189
Found at i:45586375 original size:29 final size:29
Alignment explanation
Indices: 45586336--45586403 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
45586326 TTTTTTTAAA
* *
45586336 AAAT-AATTAAATTAGGTTTTAGGGTTTT
1 AAATAAATTAAATTAGATTTTAGAGTTTT
45586364 AAATAAATTAAATTAGATTTTAGAGTTTT
1 AAATAAATTAAATTAGATTTTAGAGTTTT
45586393 AAATAAATTAA
1 AAATAAATTAA
45586404 TTAAATTAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
28 4 0.11
29 33 0.89
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.43
Consensus pattern (29 bp):
AAATAAATTAAATTAGATTTTAGAGTTTT
Found at i:45586467 original size:29 final size:31
Alignment explanation
Indices: 45586329--45586468 Score: 112
Period size: 33 Copynumber: 4.5 Consensus size: 31
45586319 TTTAGAGTTT
* *
45586329 TTTTAA-AAAATAATTAAATTAGGTTTTAGG
1 TTTTAATAAAATAATTAAATTAGGGTTTAAG
* **
45586359 GTTT--T-AAATAAATTAAATTAGATTTTAGAG
1 TTTTAATAAAAT-AATTAAATTAGGGTTTA-AG
*
45586389 TTTTAAATAAATTAATTAAATTAGGGTTTAGAG
1 TTTT-AATAAAATAATTAAATTAGGGTTTA-AG
*
45586422 TGTTTAAGAAAATTAATTAAATTAGGGTTT-AG
1 T-TTTAATAAAA-TAATTAAATTAGGGTTTAAG
*
45586454 TTTT-TTAAAATAATT
1 TTTTAATAAAATAATT
45586469 TTGTGTTTAG
Statistics
Matches: 90, Mismatches: 11, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
28 4 0.04
29 21 0.23
30 11 0.12
31 3 0.03
32 3 0.03
33 25 0.28
34 23 0.26
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (31 bp):
TTTTAATAAAATAATTAAATTAGGGTTTAAG
Found at i:45586848 original size:125 final size:125
Alignment explanation
Indices: 45586523--45587042 Score: 754
Period size: 126 Copynumber: 4.1 Consensus size: 125
45586513 GGATTTTGTT
* * * * *
45586523 TTTTTCTACAGTAGTT-TTAGAAAAATTAATTTTGAGAAGACGGTTTTGAGAAGATAATGCCAAA
1 TTTTTCTACAGTAGTTCCT-GAAAAA-TAATTTTGAGAAGACGGTTTTGAAAAAATAGTGTCAAA
* * * *
45586587 AACGCTTCAAGCAGGATGCACTGTTAGCAAACTTACTGAAAAAAGCTCCCAAGTGGATGCTC
64 AACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
* *
45586649 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTTTCAAAA
1 TTTTTCTACAGTAGTTCCTG-AAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAGTGTCAAAA
* * *
45586714 ACTCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTC
65 ACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
* *
45586775 TATTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGACAGTTTTGAAAAAATAGTGTCAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAGTGTCAAAAA
* *
45586840 CACTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCTCACGTGGATGCTC
66 CGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
* * * * **
45586900 TTTTTCTACAATAGTTTCAGAAAAATAATTTTGAGAAGACGATTCTAAAAAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGACGGTT-TTGAAAAAATAGTGTCAAAA
* * *
45586965 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTTAAAAAAGCTCCCACGTGGATGCTT
65 ACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
45587026 TTTTTCTACAGTAGTTC
1 TTTTTCTACAGTAGTTC
45587043 ATGTTTGGCC
Statistics
Matches: 354, Mismatches: 37, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
125 136 0.38
126 212 0.60
127 6 0.02
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (125 bp):
TTTTTCTACAGTAGTTCCTGAAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAGTGTCAAAAA
CGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGATGCTC
Found at i:45586993 original size:251 final size:253
Alignment explanation
Indices: 45586525--45587042 Score: 774
Period size: 251 Copynumber: 2.1 Consensus size: 253
45586515 ATTTTGTTTT
* * * *
45586525 TTTCTACAGTAGTT-TTAGAAAAATTAATTTTGAGAAGACGGTTTTGAGAAGATAATGCCAAAAA
1 TTTCTACAGTAGTTCCTAGAAAAATTAATTTTGAGAAGACAGTTTTGAAAAAATAATGCCAAAAA
* * * *
45586589 CGCTTCAAGCAGGATGCACTGTTAGCAAACTTACTGAAAAAAGCTCCCAAGTGGATGCTCTTTTT
66 CACTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCAAGTGGATGCTCTTTTT
* * * * * *
45586654 CTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTTTCAAAAACTCT
131 CTACAATAGTTCCAGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTCAAAAACGCT
45586719 TCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTCTA
196 TCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTCTA
* *
45586777 TTTCTACAGTAGTTCCT-GAAAAA-TAATTTTGAGAAGACAGTTTTGAAAAAATAGTGTCAAAAA
1 TTTCTACAGTAGTTCCTAGAAAAATTAATTTTGAGAAGACAGTTTTGAAAAAATAATGCCAAAAA
* *
45586840 CACTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCTCACGTGGATGCTCTTTTT
66 CACTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCAAGTGGATGCTCTTTTT
*
45586905 CTACAATAGTTTCAG-AAAAATAATTTTGAGAAGACGATTCTAAAAAAAATAGTGTCAAAAACGC
131 CTACAATAGTTCCAGAAAAAATAATTTTGAGAAGACGATTCT-AAAAAAATAGTGTCAAAAACGC
* * * * * *
45586969 TTCAAGCAGGATGCACTGTCAGCAAAATTACTTAAAAAAGCTCCCACGTGGATGCTTTT
195 TTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTCTA
45587028 TTTCTACAGTAGTTC
1 TTTCTACAGTAGTTC
45587043 ATGTTTGGCC
Statistics
Matches: 239, Mismatches: 25, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
250 25 0.10
251 193 0.81
252 20 0.08
253 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (253 bp):
TTTCTACAGTAGTTCCTAGAAAAATTAATTTTGAGAAGACAGTTTTGAAAAAATAATGCCAAAAA
CACTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCAAGTGGATGCTCTTTTT
CTACAATAGTTCCAGAAAAAATAATTTTGAGAAGACGATTCTAAAAAAATAGTGTCAAAAACGCT
TCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTAGACGCTCTA
Found at i:45590612 original size:18 final size:18
Alignment explanation
Indices: 45590586--45590628 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
45590576 AACTGAGAAA
* *
45590586 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
45590604 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
45590622 AGGATAC
1 AGGATAC
45590629 GCACCTGACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:45592204 original size:24 final size:24
Alignment explanation
Indices: 45592156--45592206 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
45592146 ACTGTTATAA
* *
45592156 AAAATTATAAAATAAAAATTAATT
1 AAAATTACAAAATAAAAAATAATT
45592180 AAAATTACATAAATAAAAAAT-ATT
1 AAAATTACA-AAATAAAAAATAATT
45592204 AAA
1 AAA
45592207 TAATATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (24 bp):
AAAATTACAAAATAAAAAATAATT
Found at i:45592415 original size:32 final size:32
Alignment explanation
Indices: 45592379--45592439 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
45592369 ATTTAATTAA
45592379 AGAGA-GCTTTGAGAAATTTAGGAAGAAATTTG
1 AGAGATGCTTTGAGAAATTT-GGAAGAAATTTG
**
45592411 AGAGATTTTTTGAGAAATTTGGAAGAAAT
1 AGAGATGCTTTGAGAAATTTGGAAGAAAT
45592440 GCGTGAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 14 0.54
33 12 0.46
ACGTcount: A:0.41, C:0.02, G:0.26, T:0.31
Consensus pattern (32 bp):
AGAGATGCTTTGAGAAATTTGGAAGAAATTTG
Found at i:45606078 original size:18 final size:18
Alignment explanation
Indices: 45606057--45606093 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45606047 ATGTGTTTAG
*
45606057 TTATTTTTATTTAATTAA
1 TTATTTTAATTTAATTAA
*
45606075 TTATTTTAATTTATTTAA
1 TTATTTTAATTTAATTAA
45606093 T
1 T
45606094 AATATATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTTTAATTTAATTAA
Found at i:45606087 original size:22 final size:22
Alignment explanation
Indices: 45606062--45606108 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
45606052 TTTAGTTATT
45606062 TTTATTTAATTAAT-TATTTTAA
1 TTTATTTAA-TAATATATTTTAA
*
45606084 TTTATTTAATAATATATTTTTA
1 TTTATTTAATAATATATTTTAA
45606106 TTT
1 TTT
45606109 CATATAGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTATTTAATAATATATTTTAA
Found at i:45606351 original size:11 final size:11
Alignment explanation
Indices: 45606337--45606378 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
45606327 GTTTAAACTA
45606337 TAATTAAAGTG
1 TAATTAAAGTG
*
45606348 TAATTAAAAATG
1 TAATT-AAAGTG
45606360 -AATATAAAGTG
1 TAAT-TAAAGTG
45606371 TAATTAAA
1 TAATTAAA
45606379 ATTTTATTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (11 bp):
TAATTAAAGTG
Found at i:45610070 original size:16 final size:16
Alignment explanation
Indices: 45610046--45610084 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
45610036 TAGCCTACGA
*
45610046 AAAGGTTGATATGAGT
1 AAAGCTTGATATGAGT
45610062 AAAGCTTGATATGAGT
1 AAAGCTTGATATGAGT
45610078 AAAGCTT
1 AAAGCTT
45610085 ATGATAAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.31
Consensus pattern (16 bp):
AAAGCTTGATATGAGT
Found at i:45613192 original size:13 final size:13
Alignment explanation
Indices: 45613176--45613228 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
45613166 TTTAAACCAA
45613176 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
45613189 ACTTCTCAAAAGT
1 ACTTTTCAAAAGC
* *
45613202 ACTTTTCCACAA-T
1 ACTTTT-CAAAAGC
45613215 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
45613228 A
1 A
45613229 ATGAAGAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
12 4 0.12
13 24 0.75
14 4 0.12
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:45613957 original size:25 final size:25
Alignment explanation
Indices: 45613924--45613977 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
45613914 AAATATATAT
*
45613924 TTTTATTTTTTAA-TTTTAAAATAC
1 TTTTATTTTTTAATTTTTAAAATAA
45613948 TTTTATTTTTTTAATTTTTAAAATAA
1 TTTTA-TTTTTTAATTTTTAAAATAA
45613974 TTTT
1 TTTT
45613978 TAATGTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 5 0.19
25 8 0.30
26 14 0.52
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTATTTTTTAATTTTTAAAATAA
Found at i:45613986 original size:26 final size:25
Alignment explanation
Indices: 45613913--45613979 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 25
45613903 CCGAATATAA
45613913 TAAATATATATTTTTATTTTTTAATTT
1 TAAA-ATA-ATTTTTATTTTTTAATTT
*
45613940 TAAAAT-ACTTTTATTTTTTTAATTTT
1 TAAAATAATTTTTA-TTTTTTAA-TTT
45613966 TAAAATAATTTTTA
1 TAAAATAATTTTTA
45613980 ATGTTTATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 6 0.17
25 8 0.23
26 11 0.31
27 10 0.29
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (25 bp):
TAAAATAATTTTTATTTTTTAATTT
Found at i:45619759 original size:21 final size:21
Alignment explanation
Indices: 45619730--45619769 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
45619720 GATTTTAACA
*
45619730 TTTATTTATGATTAATTATTG
1 TTTAATTATGATTAATTATTG
*
45619751 TTTAATTATGTTTAATTAT
1 TTTAATTATGATTAATTAT
45619770 GCAAATAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (21 bp):
TTTAATTATGATTAATTATTG
Found at i:45619762 original size:10 final size:10
Alignment explanation
Indices: 45619730--45619770 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
45619720 GATTTTAACA
*
45619730 TTTATTTATG
1 TTTAATTATG
*
45619740 ATTAATTATTG
1 TTTAATTA-TG
45619751 TTTAATTATG
1 TTTAATTATG
45619761 TTTAATTATG
1 TTTAATTATG
45619771 CAAATAAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (10 bp):
TTTAATTATG
Found at i:45620283 original size:34 final size:35
Alignment explanation
Indices: 45620244--45620310 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
45620234 CAGTAAAATA
*
45620244 TTTTCTGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTACGGGAAAATATTTTAC
*
45620278 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCTGTAAAATGATTTACGGGAAAATATTTT
45620311 CTAGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 18 0.60
35 12 0.40
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.46
Consensus pattern (35 bp):
TTTTCTGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:45622446 original size:16 final size:15
Alignment explanation
Indices: 45622420--45622449 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
45622410 AAAATTCAGA
45622420 AATTTAGTTTTTTTT
1 AATTTAGTTTTTTTT
45622435 AATTTGAGTTTTTTT
1 AATTT-AGTTTTTTT
45622450 ATTTTTAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (15 bp):
AATTTAGTTTTTTTT
Found at i:45625189 original size:26 final size:27
Alignment explanation
Indices: 45625131--45625206 Score: 109
Period size: 26 Copynumber: 2.8 Consensus size: 27
45625121 AGGTACGTAA
*
45625131 AAAAAGAATTCGAAATGAAAAAAAAGTTG
1 AAAAA-AATT-GAAATTAAAAAAAAGTTG
45625160 AAAAAAATTGAAATTAAAAAAAAGTT-
1 AAAAAAATTGAAATTAAAAAAAAGTTG
*
45625186 AAAAAAATCGAAATTAAAAAA
1 AAAAAAATTGAAATTAAAAAA
45625207 TATATATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 20 0.44
27 16 0.36
28 4 0.09
29 5 0.11
ACGTcount: A:0.68, C:0.03, G:0.11, T:0.18
Consensus pattern (27 bp):
AAAAAAATTGAAATTAAAAAAAAGTTG
Found at i:45627321 original size:39 final size:39
Alignment explanation
Indices: 45627278--45627355 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
45627268 ACAAGCGAGA
45627278 GAAAAAGAAAAGAGTG-AAAAC-ACAAAAGAAAAGAAAAAT
1 GAAAAAG-AAAGAG-GAAAAACTACAAAAGAAAAGAAAAAT
* * *
45627317 GAAAAAGAGAGAGGAAAAACTACGAAAGAAAAGGAAAAT
1 GAAAAAGAAAGAGGAAAAACTACAAAAGAAAAGAAAAAT
45627356 AAAGTGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 1 0.03
38 10 0.29
39 23 0.68
ACGTcount: A:0.68, C:0.05, G:0.22, T:0.05
Consensus pattern (39 bp):
GAAAAAGAAAGAGGAAAAACTACAAAAGAAAAGAAAAAT
Found at i:45636107 original size:25 final size:25
Alignment explanation
Indices: 45636074--45636133 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
45636064 CTGTTTTTTA
*
45636074 TTTTCATTTTATAACAATAATTAAT
1 TTTTAATTTTATAACAATAATTAAT
45636099 TTTTAATTTTATAACAATAATTAAT
1 TTTTAATTTTATAACAATAATTAAT
*
45636124 TTTCAATTTT
1 TTTTAATTTT
45636134 GGTCTTTCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (25 bp):
TTTTAATTTTATAACAATAATTAAT
Found at i:45638832 original size:32 final size:32
Alignment explanation
Indices: 45638791--45638873 Score: 121
Period size: 34 Copynumber: 2.5 Consensus size: 32
45638781 ATATAACTAA
45638791 ATCCTCATATAAATATATATTTTTTGTCTATC
1 ATCCTCATATAAATATATATTTTTTGTCTATC
*
45638823 ATCCTCATATAAATGTATATTTTTTTTGTCTATC
1 ATCCTCATATAAA--TATATATTTTTTGTCTATC
*
45638857 ATGCCTCACATAAATAT
1 AT-CCTCATATAAATAT
45638874 TTAACAAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
32 13 0.28
33 3 0.07
34 20 0.43
35 10 0.22
ACGTcount: A:0.31, C:0.17, G:0.05, T:0.47
Consensus pattern (32 bp):
ATCCTCATATAAATATATATTTTTTGTCTATC
Found at i:45639204 original size:26 final size:23
Alignment explanation
Indices: 45639142--45639207 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 23
45639132 CAATCACTTT
45639142 TTTTATATTAAAATATTATTTTTA
1 TTTT-TATTAAAATATTATTTTTA
* * *
45639166 CTTTAAATAAAATATTATTATTTTA
1 TTTTTATTAAAATATTA-T-TTTTA
45639191 TTTTTATTAGAAATATT
1 TTTTTATTA-AAATATT
45639208 TAAATATATA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 11 0.33
24 4 0.12
25 11 0.33
26 7 0.21
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTTTATTAAAATATTATTTTTA
Found at i:45639553 original size:60 final size:60
Alignment explanation
Indices: 45639460--45639578 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
45639450 TGTTTTTTTA
*
45639460 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
*
45639520 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTCTGTTATAAATTGTTGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTT
45639579 AGTTTAGTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.32, C:0.01, G:0.13, T:0.54
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATGTTATAAATTGTTGTGTTTG
Found at i:45640556 original size:15 final size:15
Alignment explanation
Indices: 45640536--45640565 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
45640526 CCAAAGTCTC
45640536 TATTTATAGGCATAA
1 TATTTATAGGCATAA
45640551 TATTTATAGGCATAA
1 TATTTATAGGCATAA
45640566 GAAGTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
TATTTATAGGCATAA
Found at i:45644585 original size:19 final size:19
Alignment explanation
Indices: 45644561--45644601 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
45644551 TGATTTATTC
45644561 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
45644580 TAAGATTTATCTACCTAAA
1 TAAGATTTATCTACCTAAA
45644599 TAA
1 TAA
45644602 CTTTAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:45647004 original size:105 final size:105
Alignment explanation
Indices: 45646817--45647033 Score: 416
Period size: 105 Copynumber: 2.1 Consensus size: 105
45646807 AACACTACAC
*
45646817 TTAAAAACTCGGAGGGATAAATCTGTGATCAATTTAGAGTAAGGAAAGTTATCTTTAAAGAGACT
1 TTAATAACTCGGAGGGATAAATCTGTGATCAATTTAGAGTAAGGAAAGTTATCTTTAAAGAGACT
45646882 GAAAGGAGTTTTATAGTTTAGAGTTTTACTAGACATTCTA
66 GAAAGGAGTTTTATAGTTTAGAGTTTTACTAGACATTCTA
*
45646922 TTAATAACTCGGAGGGATAAATCTGTGATCAATTTATAGTAAGGAAAGTTATCTTTAAAGAGACT
1 TTAATAACTCGGAGGGATAAATCTGTGATCAATTTAGAGTAAGGAAAGTTATCTTTAAAGAGACT
45646987 GAAAGGAGTTTTATAGTTTAGAGTTTTACTAGACATTCTA
66 GAAAGGAGTTTTATAGTTTAGAGTTTTACTAGACATTCTA
45647027 TTAATAA
1 TTAATAA
45647034 GATATGCAGC
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 110 1.00
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (105 bp):
TTAATAACTCGGAGGGATAAATCTGTGATCAATTTAGAGTAAGGAAAGTTATCTTTAAAGAGACT
GAAAGGAGTTTTATAGTTTAGAGTTTTACTAGACATTCTA
Found at i:45647748 original size:24 final size:24
Alignment explanation
Indices: 45647716--45647765 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
45647706 TCTTTAGCAT
*
45647716 TGCTAATCATCCTCCCTGAGACTA
1 TGCTAATCATCCTCCCCGAGACTA
45647740 TGCTAATCATCCTCCCCGAGACTA
1 TGCTAATCATCCTCCCCGAGACTA
45647764 TG
1 TG
45647766 TCCTAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.28
Consensus pattern (24 bp):
TGCTAATCATCCTCCCCGAGACTA
Found at i:45648551 original size:19 final size:19
Alignment explanation
Indices: 45648527--45648563 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
45648517 TGATTTATTC
45648527 TAAGATTTATCCACCTAAG
1 TAAGATTTATCCACCTAAG
*
45648546 TAAGATTTATCTACCTAA
1 TAAGATTTATCCACCTAA
45648564 ATAACTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (19 bp):
TAAGATTTATCCACCTAAG
Found at i:45649645 original size:13 final size:13
Alignment explanation
Indices: 45649627--45649667 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
45649617 GGCAACCCAA
45649627 TTTTATTTTTATT
1 TTTTATTTTTATT
* *
45649640 TTTTATATATATT
1 TTTTATTTTTATT
45649653 TTTTATTTTTATT
1 TTTTATTTTTATT
45649666 TT
1 TT
45649668 CTTGCATGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTATTTTTATT
Found at i:45650233 original size:6 final size:7
Alignment explanation
Indices: 45650216--45650241 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
45650206 AACAAACAAA
45650216 AAAAAGT
1 AAAAAGT
45650223 AAAAAGT
1 AAAAAGT
45650230 AAAAAGT
1 AAAAAGT
45650237 AAAAA
1 AAAAA
45650242 AAATATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAAAGT
Found at i:45651606 original size:21 final size:20
Alignment explanation
Indices: 45651572--45651613 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
45651562 CTCTATTCTA
* *
45651572 TTTAGTTTTACAATTTCAAT
1 TTTAATTTTACAATCTCAAT
45651592 TTTAATTTATACAATCTCAAT
1 TTTAATTT-TACAATCTCAAT
45651613 T
1 T
45651614 CGTCCATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.52
Consensus pattern (20 bp):
TTTAATTTTACAATCTCAAT
Found at i:45653972 original size:34 final size:34
Alignment explanation
Indices: 45653926--45653993 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
45653916 ACAGATAATC
* *
45653926 TCAGTTTGGGCCTAAGCTCC-TTTTAGTATCAGTA
1 TCAGTTTAGGCCTAAGC-CCATTTCAGTATCAGTA
45653960 TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
1 TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
45653994 AGCATTAGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 2 0.06
34 29 0.94
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (34 bp):
TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
Found at i:45654006 original size:34 final size:33
Alignment explanation
Indices: 45653933--45654011 Score: 81
Period size: 34 Copynumber: 2.3 Consensus size: 33
45653923 ATCTCAGTTT
* *
45653933 GGGCCTAAGCTCCTTTTAGTATCAGTATCAGTTTA
1 GGGCCTAAGC-CCTTTCAGTATCAGTA-CAGATTA
45653968 -GGCCTAAGCCCATTTCAGTATCAGTA-AGCATTA
1 GGGCCTAAGCCC-TTTCAGTATCAGTACAG-ATTA
*
45654001 GGGCCTTAGCC
1 GGGCCTAAGCC
45654012 TATGACAGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
32 2 0.05
33 5 0.13
34 31 0.82
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (33 bp):
GGGCCTAAGCCCTTTCAGTATCAGTACAGATTA
Found at i:45656664 original size:16 final size:16
Alignment explanation
Indices: 45656643--45656673 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45656633 ACTTTAGGGG
45656643 CAAAATGTAATTTTTC
1 CAAAATGTAATTTTTC
*
45656659 CAAAATGTGATTTTT
1 CAAAATGTAATTTTT
45656674 GGACTGGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (16 bp):
CAAAATGTAATTTTTC
Found at i:45656997 original size:101 final size:102
Alignment explanation
Indices: 45656882--45657064 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 102
45656872 AAAGTGATGG
* *
45656882 TCACGTGTGTAGTACTATGTGCAGGGTACTACGTGTACC-AGA-A-TGATAGGTCGCATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGA-ATAGTGAT-GGTCACATGTGTAG
*
45656944 TACTATGTGCAGGGTACTATGCGTACCGGATAGCTTCGA
64 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* *
45656983 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATAGTGATGGTTACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGTGATGGTCACATGTGTAGTA
45657048 CTATGTGCAGGCTACTA
66 CTATGTGCAGGCTACTA
45657065 CGTGAACTGG
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
101 38 0.51
102 32 0.43
103 4 0.05
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:45657013 original size:51 final size:49
Alignment explanation
Indices: 45656879--45657068 Score: 202
Period size: 51 Copynumber: 3.8 Consensus size: 49
45656869 GTGAAAGTGA
* * *
45656879 TGGTCACGTGTGTAGTACTATGTGCAGGGTACTACGTGTACCAGA-ATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-G-T
* * * * *
45656929 AGGTCGCATGTGTAGTACTATGTGCAGGGTACTATGCGTACCGGATAGCT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-T
* * * *
45656979 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATAGT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
*
45657029 GATGGTTACATGTGTAGTACTATGTGCAGGCTACTACGTG
1 --TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTG
45657069 AACTGGTATC
Statistics
Matches: 117, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
50 42 0.36
51 74 0.63
52 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT
Found at i:45657313 original size:16 final size:16
Alignment explanation
Indices: 45657292--45657323 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45657282 TGATTGAAAG
*
45657292 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
45657308 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
45657324 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:45665235 original size:42 final size:43
Alignment explanation
Indices: 45665133--45665237 Score: 131
Period size: 42 Copynumber: 2.5 Consensus size: 43
45665123 AATGCCAACG
* * * *
45665133 TCCCAGACATGGTCTTACATGTAATCAAACAACGATGCCATTG
1 TCCCAGACATGGTCTTACACGTAATCAAACAACGACGCCAATC
* * * *
45665176 TCCCAGGCAAGGTCTTACACGTAATCATA-TACGACGCCAATC
1 TCCCAGACATGGTCTTACACGTAATCAAACAACGACGCCAATC
45665218 TCCCAGACATGGTCTTACAC
1 TCCCAGACATGGTCTTACAC
45665238 ATAAATCTCA
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
42 27 0.52
43 25 0.48
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCAAACAACGACGCCAATC
Found at i:45667035 original size:34 final size:34
Alignment explanation
Indices: 45666989--45667056 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
45666979 ACAAATAATC
* * *
45666989 TCAGTTTGGGCCTAAGCCCTTTTTAGTATCAGTA
1 TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
45667023 TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
1 TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
45667057 AGCATTAGGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (34 bp):
TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
Found at i:45667069 original size:34 final size:34
Alignment explanation
Indices: 45666996--45667074 Score: 90
Period size: 34 Copynumber: 2.3 Consensus size: 34
45666986 ATCTCAGTTT
* * *
45666996 GGGCCTAAGCCCTTTTTAGTATCAGTATCAGTTTA
1 GGGCCTAAGCCCATTTCAGTATCAGTA-CAGATTA
45667031 -GGCCTAAGCCCATTTCAGTATCAGTA-AGCATTA
1 GGGCCTAAGCCCATTTCAGTATCAGTACAG-ATTA
*
45667064 GGGCCTTAGCC
1 GGGCCTAAGCC
45667075 TATCACAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
32 2 0.05
33 3 0.08
34 33 0.87
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGTATCAGTACAGATTA
Found at i:45668602 original size:38 final size:40
Alignment explanation
Indices: 45668549--45668628 Score: 137
Period size: 38 Copynumber: 2.0 Consensus size: 40
45668539 AATTGGGATA
*
45668549 ACTCCACAGTCCCATATTTTCCTTCTAAAATCACTCCAAC
1 ACTCCACAGTCCCATATTTTCCTCCTAAAATCACTCCAAC
45668589 ACTCCA-A-TCCCATATTTTCCTCCTAAAATCACTCCAAC
1 ACTCCACAGTCCCATATTTTCCTCCTAAAATCACTCCAAC
45668627 AC
1 AC
45668629 CCCCACTACT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 32 0.82
39 1 0.03
40 6 0.15
ACGTcount: A:0.31, C:0.39, G:0.01, T:0.29
Consensus pattern (40 bp):
ACTCCACAGTCCCATATTTTCCTCCTAAAATCACTCCAAC
Found at i:45672015 original size:11 final size:11
Alignment explanation
Indices: 45671975--45672053 Score: 53
Period size: 12 Copynumber: 7.5 Consensus size: 11
45671965 GGCCCATTTT
45671975 TATTTT-AAAA
1 TATTTTAAAAA
45671985 -ATTTTAAAAA
1 TATTTTAAAAA
* **
45671995 -ACTAAAAAAA
1 TATTTTAAAAA
45672005 GTATTTTAAAAA
1 -TATTTTAAAAA
45672017 TATTTT--AAA
1 TATTTTAAAAA
**
45672026 -ATTAAAAAAA
1 TATTTTAAAAA
45672036 GTATTTTAAAAA
1 -TATTTTAAAAA
45672048 TATTTT
1 TATTTT
45672054 TAAATTAAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 13
0.69 0.13 0.17
Matches are distributed among these distances:
8 3 0.06
9 8 0.15
10 14 0.27
11 12 0.23
12 15 0.29
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.41
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:45672055 original size:32 final size:32
Alignment explanation
Indices: 45671975--45672066 Score: 136
Period size: 31 Copynumber: 3.0 Consensus size: 32
45671965 GGCCCATTTT
** *
45671975 TATTTTAAAAAT-TTTAAAAAACTAAAAAAAG
1 TATTTTAAAAATATTTTTAAAATTAAAAAAAG
45672006 TATTTTAAAAATA-TTTTAAAATTAAAAAAAG
1 TATTTTAAAAATATTTTTAAAATTAAAAAAAG
45672037 TATTTTAAAAATATTTTT-AAATTAAAAAAA
1 TATTTTAAAAATATTTTTAAAATTAAAAAAA
45672067 TTAAAAAAGT
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
31 52 0.93
32 4 0.07
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (32 bp):
TATTTTAAAAATATTTTTAAAATTAAAAAAAG
Found at i:45672086 original size:39 final size:40
Alignment explanation
Indices: 45672023--45672106 Score: 125
Period size: 39 Copynumber: 2.1 Consensus size: 40
45672013 AAAATATTTT
* * *
45672023 AAAATTAAAAAAAGTATTTTAAAAATATTTTTAAATTAAA
1 AAAATTAAAAAAAGTATGTAAAAAATATTTTAAAATTAAA
*
45672063 AAAATT-AAAAAAGTATGTAAAAAATATTTTAAAATTTAA
1 AAAATTAAAAAAAGTATGTAAAAAATATTTTAAAATTAAA
45672102 AAAAT
1 AAAAT
45672107 AAATATATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 34 0.85
40 6 0.15
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (40 bp):
AAAATTAAAAAAAGTATGTAAAAAATATTTTAAAATTAAA
Found at i:45673598 original size:28 final size:28
Alignment explanation
Indices: 45673559--45673620 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 28
45673549 AACTTAAAAT
*
45673559 GTCCAAAAGTCCATA-AAACCAAAGAAA
1 GTCCAAAAGTCCATATAAACAAAAGAAA
*
45673586 GTCCTAAACGTCCATATTAAACAAAAGAAA
1 GTCC-AAAAGTCCATA-TAAACAAAAGAAA
45673616 GTCCA
1 GTCCA
45673621 TAATACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 4 0.13
28 10 0.33
29 1 0.03
30 15 0.50
ACGTcount: A:0.50, C:0.23, G:0.11, T:0.16
Consensus pattern (28 bp):
GTCCAAAAGTCCATATAAACAAAAGAAA
Found at i:45674112 original size:22 final size:22
Alignment explanation
Indices: 45674096--45674138 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
45674086 GCATATCTTA
45674096 ATCAAATATCATACATACATAT
1 ATCAAATATCATACATACATAT
* *
45674118 ATCATATATCATATAT-CATAT
1 ATCAAATATCATACATACATAT
45674139 GGCATGCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (22 bp):
ATCAAATATCATACATACATAT
Found at i:45674123 original size:7 final size:7
Alignment explanation
Indices: 45674096--45674138 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
45674086 GCATATCTTA
*
45674096 ATCAAAT
1 ATCATAT
*
45674103 ATCATAC
1 ATCATAT
45674110 ATACATAT
1 AT-CATAT
45674118 ATCATAT
1 ATCATAT
45674125 ATCATAT
1 ATCATAT
45674132 ATCATAT
1 ATCATAT
45674139 GGCATGCATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (7 bp):
ATCATAT
Found at i:45677169 original size:10 final size:10
Alignment explanation
Indices: 45677154--45677185 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
45677144 CTAGGTTGTG
45677154 TGTACCTAAA
1 TGTACCTAAA
45677164 TGTACCTAAA
1 TGTACCTAAA
45677174 TGTACCTTAAA
1 TGTACC-TAAA
45677185 T
1 T
45677186 CTCAAGTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 16 0.76
11 5 0.24
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (10 bp):
TGTACCTAAA
Found at i:45682040 original size:10 final size:10
Alignment explanation
Indices: 45682025--45682053 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
45682015 TAAAGATAGT
45682025 AATCCATAAA
1 AATCCATAAA
45682035 AATCCATAAA
1 AATCCATAAA
45682045 AATCCATAA
1 AATCCATAA
45682054 GGAACTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (10 bp):
AATCCATAAA
Found at i:45693236 original size:21 final size:21
Alignment explanation
Indices: 45693212--45693265 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
45693202 TTATTATTTA
*
45693212 TTATTTTACTTTTAT-TCTGAT
1 TTATTTTA-TTTTATCTCTCAT
* *
45693233 TTATTTTATTTTGTCTTTCAT
1 TTATTTTATTTTATCTCTCAT
45693254 TTATTTTATTTT
1 TTATTTTATTTT
45693266 TAGTATTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 5 0.17
21 24 0.83
ACGTcount: A:0.17, C:0.07, G:0.04, T:0.72
Consensus pattern (21 bp):
TTATTTTATTTTATCTCTCAT
Found at i:45706364 original size:5 final size:5
Alignment explanation
Indices: 45706354--45706388 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
45706344 ATAGATTAGG
45706354 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
45706389 TTGAAAATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:45710297 original size:18 final size:18
Alignment explanation
Indices: 45710274--45710308 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
45710264 AATCTCTTAT
45710274 GGTCAAGGTTACTATGCG
1 GGTCAAGGTTACTATGCG
45710292 GGTCAAGGTTACTATGC
1 GGTCAAGGTTACTATGC
45710309 AGCTGATGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (18 bp):
GGTCAAGGTTACTATGCG
Found at i:45712284 original size:42 final size:42
Alignment explanation
Indices: 45712237--45712324 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
45712227 CTCTACTAGG
*
45712237 TTCTCCACCAGATATTGATTTGGTGCAATCTCAGTCCAATAC
1 TTCTCCACCAGATATTGATTTGGTGCAATCTCAATCCAATAC
** *
45712279 TTCTCCATGAGATGTTGATTTGGTGCAATCTCAATCCAATAC
1 TTCTCCACCAGATATTGATTTGGTGCAATCTCAATCCAATAC
45712321 TTCT
1 TTCT
45712325 TCGGTTGATC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (42 bp):
TTCTCCACCAGATATTGATTTGGTGCAATCTCAATCCAATAC
Found at i:45716686 original size:13 final size:13
Alignment explanation
Indices: 45716668--45716692 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45716658 TTAATTCCTT
45716668 CAAAATTTTTAAG
1 CAAAATTTTTAAG
45716681 CAAAATTTTTAA
1 CAAAATTTTTAA
45716693 ATTTTCATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (13 bp):
CAAAATTTTTAAG
Found at i:45717260 original size:22 final size:20
Alignment explanation
Indices: 45717233--45717298 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 20
45717223 TTAAAAATTA
45717233 AAATTTTCTTATATAAT-TTTT
1 AAATTTT-TTATA-AATATTTT
45717254 AGAA-TTTTTATAAATATTTT
1 A-AATTTTTTATAAATATTTT
*
45717274 AAA-TTTTAAT-AATATTTT
1 AAATTTTTTATAAATATTTT
*
45717292 AGATTTT
1 AAATTTT
45717299 CAAAAGTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 10 0.25
19 14 0.35
20 10 0.25
21 4 0.10
22 2 0.05
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.58
Consensus pattern (20 bp):
AAATTTTTTATAAATATTTT
Found at i:45717280 original size:18 final size:18
Alignment explanation
Indices: 45717241--45717330 Score: 60
Period size: 18 Copynumber: 4.8 Consensus size: 18
45717231 TAAAATTTTC
45717241 TTATATAAT-TTTTAGAATTT
1 TTATA-AATATTTTA-AA-TT
45717261 TTATAAATATTTTAAATT
1 TTATAAATATTTTAAATT
*
45717279 TTA-ATAATATTTTAGATT
1 TTATA-AATATTTTAAATT
*
45717297 TTCA-AAAGTTAATTTAAATT
1 TT-ATAAA--TATTTTAAATT
* *
45717317 TTTTAAAAATTTTA
1 TTATAAATATTTTA
45717331 TTGAGAGGAA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 1 0.02
18 26 0.45
19 7 0.12
20 24 0.41
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (18 bp):
TTATAAATATTTTAAATT
Found at i:45718089 original size:61 final size:58
Alignment explanation
Indices: 45718013--45718158 Score: 181
Period size: 61 Copynumber: 2.5 Consensus size: 58
45718003 TTGTTATTAA
*
45718013 ATTTTAATATGATTATTATTAAATATATTTTAATAAAAATAATAATAAATAATTTAAT-CAT
1 ATTTTAATATAATTATTATTAAATATATTTTAAT-AAAATAAT-AT--ATAATTTAATACAT
* * * *
45718074 ATTTTAACATAATTATTGTTAAATACAATTTAATAAAATAATATATAATTTAATAACAT
1 ATTTTAATATAATTATTATTAAATATATTTTAATAAAATAATATATAATTTAAT-ACAT
45718133 -TTTTAATATAATTATTATTAAA-ATAT
1 ATTTTAATATAATTATTATTAAATATAT
45718159 GAATTAATAA
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
57 12 0.16
58 20 0.27
59 5 0.07
60 8 0.11
61 29 0.39
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (58 bp):
ATTTTAATATAATTATTATTAAATATATTTTAATAAAATAATATATAATTTAATACAT
Found at i:45722072 original size:20 final size:20
Alignment explanation
Indices: 45722049--45722150 Score: 70
Period size: 20 Copynumber: 5.3 Consensus size: 20
45722039 TTAAAAATTT
45722049 AATATTTTTATAAAATAATA
1 AATATTTTTATAAAATAATA
* ** *
45722069 AATATTATTTTTAATTTAATG
1 AATATT-TTTATAAAATAATA
* * *
45722090 AA-ATTATCA-AAAA-GAT-
1 AATATTTTTATAAAATAATA
* * *
45722106 ATTA-TTTTACAAGATAATA
1 AATATTTTTATAAAATAATA
45722125 AATATTTTTATAAAATAATA
1 AATATTTTTATAAAATAATA
45722145 AATATT
1 AATATT
45722151 ATAAGTAATG
Statistics
Matches: 58, Mismatches: 18, Indels: 12
0.66 0.20 0.14
Matches are distributed among these distances:
16 4 0.07
17 6 0.10
18 4 0.07
19 4 0.07
20 28 0.48
21 12 0.21
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (20 bp):
AATATTTTTATAAAATAATA
Found at i:45724189 original size:35 final size:35
Alignment explanation
Indices: 45724143--45724213 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
45724133 AACAAACCAA
45724143 GCAATTGTTTATTGTGGACCCATTGAATACAGCTG
1 GCAATTGTTTATTGTGGACCCATTGAATACAGCTG
45724178 GCAATTGTTTATTGTGGACCCATTGAATACAGCTG
1 GCAATTGTTTATTGTGGACCCATTGAATACAGCTG
45724213 G
1 G
45724214 AATGCATAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (35 bp):
GCAATTGTTTATTGTGGACCCATTGAATACAGCTG
Found at i:45724771 original size:21 final size:21
Alignment explanation
Indices: 45724732--45724771 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
45724722 CCATCTCCAA
* * *
45724732 TATCAATATTCTTCTATAAAT
1 TATCAAAATTATTCCATAAAT
45724753 TATCAAAATTATTCCATAA
1 TATCAAAATTATTCCATAA
45724772 GTTTCTCGAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (21 bp):
TATCAAAATTATTCCATAAAT
Found at i:45725007 original size:13 final size:13
Alignment explanation
Indices: 45724989--45725014 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45724979 AATTAAACTT
45724989 ATAAAAAATAAAA
1 ATAAAAAATAAAA
45725002 ATAAAAAATAAAA
1 ATAAAAAATAAAA
45725015 TTAACGGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
ATAAAAAATAAAA
Found at i:45732610 original size:45 final size:45
Alignment explanation
Indices: 45732546--45732639 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
45732536 AACAGATACT
* *
45732546 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
* *
45732591 CGGTGGAATCAGCACATAGCAACCGCCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
45732636 CGGT
1 CGGT
45732640 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:45732703 original size:51 final size:51
Alignment explanation
Indices: 45732641--45732781 Score: 194
Period size: 51 Copynumber: 2.8 Consensus size: 51
45732631 ATGTTCGGTT
* * *
45732641 CACATAGTAGCCTGCACATAGTACTACGCATGTGACCATTACCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATAACCATCCGATA
* * * *
45732692 CACGTAGTAGCCTGCACATAATACTACACACGTGATCGA-AACTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATAACCATCCGATA
*
45732743 CGCATAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAT
45732782 CACTTTCAAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.03
51 73 0.95
52 2 0.03
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATAACCATCCGATA
Found at i:45743089 original size:20 final size:20
Alignment explanation
Indices: 45743061--45743105 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
45743051 TAATATGTAT
*
45743061 TGTCCTAACCGAATTAAATG
1 TGTCTTAACCGAATTAAATG
** *
45743081 TGTCTTAACTTAATTAATTG
1 TGTCTTAACCGAATTAAATG
45743101 TGTCT
1 TGTCT
45743106 AGTTTTAAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (20 bp):
TGTCTTAACCGAATTAAATG
Found at i:45746587 original size:18 final size:17
Alignment explanation
Indices: 45746561--45746616 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 17
45746551 ATTGTAAAAG
*
45746561 AAAATGAAAAGAGAGTGA
1 AAAAAGAAAAGA-AGTGA
*
45746579 AAAAAGAAAACAA-TG-
1 AAAAAGAAAAGAAGTGA
45746594 AAAAAGAAAAAGAAAGTGA
1 AAAAAG-AAAAG-AAGTGA
45746613 AAAA
1 AAAA
45746617 TTGAGTGTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 6 0.19
16 6 0.19
17 3 0.10
18 12 0.39
19 4 0.13
ACGTcount: A:0.71, C:0.02, G:0.20, T:0.07
Consensus pattern (17 bp):
AAAAAGAAAAGAAGTGA
Found at i:45758822 original size:45 final size:45
Alignment explanation
Indices: 45758656--45758825 Score: 211
Period size: 45 Copynumber: 3.8 Consensus size: 45
45758646 TTGAAAAACG
* * * *
45758656 AATAAGACCATATTTGAAAGACACTATGGCACTACA--CCAGACATG
1 AATAAGACCATAGTTGAAAGACACTATGGCA-T-CATGCCGGAAATA
*
45758701 AATAAGACCATAGTTGAAAGACACTATGGCA-CTATGCCGGAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCATC-ATGCCGGAAATA
*
45758746 AATAAGACCATAGTTGAAAGACACTATGGCATCATGTCGGAAATA
1 AATAAGACCATAGTTGAAAGACACTATGGCATCATGCCGGAAATA
* * *
45758791 AATATGACCATGGTTGAAAGACGCTATGGCATCAT
1 AATAAGACCATAGTTGAAAGACACTATGGCATCAT
45758826 TGAACAATTG
Statistics
Matches: 113, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
45 110 0.97
46 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (45 bp):
AATAAGACCATAGTTGAAAGACACTATGGCATCATGCCGGAAATA
Found at i:45759016 original size:13 final size:13
Alignment explanation
Indices: 45759000--45759082 Score: 69
Period size: 13 Copynumber: 6.3 Consensus size: 13
45758990 GTGTGAAATA
45759000 AAATGATTATATG
1 AAATGATTATATG
* *
45759013 AAAT-AGTTGTACG
1 AAATGA-TTATATG
*
45759026 AAATGATTATATA
1 AAATGATTATATG
* *
45759039 AAATGAATAAATG
1 AAATGATTATATG
* *
45759052 AAATGGTTATGTG
1 AAATGATTATATG
*
45759065 AATTGATTATATGG
1 AAATGATTATAT-G
45759079 AAAT
1 AAAT
45759083 AGATGTATGA
Statistics
Matches: 51, Mismatches: 16, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
12 1 0.02
13 45 0.88
14 5 0.10
ACGTcount: A:0.46, C:0.01, G:0.18, T:0.35
Consensus pattern (13 bp):
AAATGATTATATG
Found at i:45759072 original size:39 final size:39
Alignment explanation
Indices: 45758997--45759076 Score: 97
Period size: 39 Copynumber: 2.1 Consensus size: 39
45758987 AATGTGTGAA
* * *
45758997 ATAAAATGATTATATGAAATAGTTGTACGAAATGATTAT
1 ATAAAATGAATAAATGAAATAGTTATACGAAATGATTAT
* ** *
45759036 ATAAAATGAATAAATGAAATGGTTATGTGAATTGATTAT
1 ATAAAATGAATAAATGAAATAGTTATACGAAATGATTAT
45759075 AT
1 AT
45759077 GGAAATAGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.46, C:0.01, G:0.16, T:0.36
Consensus pattern (39 bp):
ATAAAATGAATAAATGAAATAGTTATACGAAATGATTAT
Found at i:45764474 original size:23 final size:25
Alignment explanation
Indices: 45764419--45764506 Score: 94
Period size: 26 Copynumber: 3.5 Consensus size: 25
45764409 CCACAACTTG
*
45764419 TATGAGCTTACCGATATATCAGCTC-T
1 TATGAGCTTACC-ATAT-TCAGCTCGA
45764445 TATGAGCTTACCAT-TTCAGCTCGA
1 TATGAGCTTACCATATTCAGCTCGA
*
45764469 TA-GAGCTTACCATTCTTCAGCTCGGA
1 TATGAGCTTACCA-TATTCAGCTC-GA
45764495 -ATGAGCTTACCA
1 TATGAGCTTACCA
45764507 ATCATGGCTC
Statistics
Matches: 56, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
23 17 0.30
24 4 0.07
25 11 0.20
26 24 0.43
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (25 bp):
TATGAGCTTACCATATTCAGCTCGA
Found at i:45767117 original size:28 final size:28
Alignment explanation
Indices: 45767043--45767124 Score: 74
Period size: 33 Copynumber: 2.8 Consensus size: 28
45767033 ATTAGGAATC
* * *
45767043 TAAAAAAAACCCTAAATCTTACTTTAAA
1 TAAACAAAACCCTAAAACCTACTTTAAA
45767071 TAAACAAAACATTAACCTAAAACCTACTTTAAA
1 TAAACAAAAC-----CCTAAAACCTACTTTAAA
* *
45767104 TAAGCAAAACCCTAAACCCTA
1 TAAACAAAACCCTAAAACCTA
45767125 AAAAATGGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
28 19 0.43
33 25 0.57
ACGTcount: A:0.52, C:0.23, G:0.01, T:0.23
Consensus pattern (28 bp):
TAAACAAAACCCTAAAACCTACTTTAAA
Found at i:45767799 original size:39 final size:39
Alignment explanation
Indices: 45767756--45767890 Score: 162
Period size: 39 Copynumber: 3.2 Consensus size: 39
45767746 TTTTTAATTT
45767756 TTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTTTA
1 TTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTTTA
45767795 TTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAAATTTTTTAAA
1 TTTTTTAATTTTAAAATATTTTTAAAATA---TTT----TTTTTT--A
*
45767843 TTTTTTAAATTTTAAAATATTTTTAAAATGTTTTTTTTTA
1 TTTTTT-AATTTTAAAATATTTTTAAAATATTTTTTTTTA
*
45767883 ATTTTTAA
1 TTTTTTAA
45767891 AATAAATTTT
Statistics
Matches: 84, Mismatches: 2, Indels: 20
0.79 0.02 0.19
Matches are distributed among these distances:
39 31 0.37
40 6 0.07
42 9 0.11
46 9 0.11
48 7 0.08
49 22 0.26
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.63
Consensus pattern (39 bp):
TTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTTTA
Found at i:45767830 original size:12 final size:11
Alignment explanation
Indices: 45767764--45767877 Score: 90
Period size: 11 Copynumber: 11.4 Consensus size: 11
45767754 TTTTTTTTAA
45767764 TTTTAAAATAT
1 TTTTAAAATAT
45767775 TTTTAAAATAT
1 TTTTAAAATAT
***
45767786 TTTT-TTTTAT
1 TTTTAAAATAT
*
45767796 TTTT----TAA
1 TTTTAAAATAT
45767803 TTTTAAAATAT
1 TTTTAAAATAT
45767814 TTTTAAAATACT
1 TTTTAAAATA-T
45767826 TTTTAAAAT-T
1 TTTTAAAATAT
45767836 TTTT-AAAT-T
1 TTTTAAAATAT
45767845 TTTT--AA-A-
1 TTTTAAAATAT
45767852 TTTTAAAATAT
1 TTTTAAAATAT
*
45767863 TTTTAAAATGT
1 TTTTAAAATAT
45767874 TTTT
1 TTTT
45767878 TTTTAATTTT
Statistics
Matches: 87, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
7 10 0.11
8 2 0.02
9 11 0.13
10 13 0.15
11 41 0.47
12 10 0.11
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:45767848 original size:49 final size:50
Alignment explanation
Indices: 45767764--45767877 Score: 160
Period size: 49 Copynumber: 2.3 Consensus size: 50
45767754 TTTTTTTTAA
*** *
45767764 TTTTAAAATATTTTTAAAATATTTTTTTTTATTTTTTAATTTTAAAATAT
1 TTTTAAAATATTTTTAAAATATTTTTAAATATTTTTAAATTTTAAAATAT
45767814 TTTTAAAATACTTTTTAAAAT-TTTTTAAAT-TTTTTAAATTTTAAAATAT
1 TTTTAAAATA-TTTTTAAAATATTTTTAAATATTTTTAAATTTTAAAATAT
*
45767863 TTTTAAAATGTTTTT
1 TTTTAAAATATTTTT
45767878 TTTTAATTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
48 5 0.09
49 27 0.47
50 16 0.28
51 10 0.17
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (50 bp):
TTTTAAAATATTTTTAAAATATTTTTAAATATTTTTAAATTTTAAAATAT
Found at i:45774259 original size:19 final size:20
Alignment explanation
Indices: 45774231--45774268 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
45774221 TACACATTAA
45774231 AAAATATAAAAAT-ATATAT
1 AAAATATAAAAATCATATAT
*
45774250 AAAATCTAAAAATCATATA
1 AAAATATAAAAATCATATA
45774269 AATTGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (20 bp):
AAAATATAAAAATCATATAT
Found at i:45774443 original size:11 final size:11
Alignment explanation
Indices: 45774403--45774449 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
45774393 TAGTATAAAA
45774403 ATTTTAATATT
1 ATTTTAATATT
*
45774414 ATGTTT-ACATT
1 AT-TTTAATATT
*
45774425 A-TTCAATATT
1 ATTTTAATATT
45774435 ATTTTAATATT
1 ATTTTAATATT
45774446 ATTT
1 ATTT
45774450 ATTATTTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
9 2 0.07
10 5 0.17
11 19 0.66
12 3 0.10
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (11 bp):
ATTTTAATATT
Found at i:45774455 original size:21 final size:21
Alignment explanation
Indices: 45774405--45774455 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
45774395 GTATAAAAAT
45774405 TTTAATATTATGTTTACATTA
1 TTTAATATTATGTTTACATTA
* *
45774426 TTCAATATTAT-TTTAATATTA
1 TTTAATATTATGTTT-ACATTA
*
45774447 TTTATTATT
1 TTTAATATT
45774456 TTCAATAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (21 bp):
TTTAATATTATGTTTACATTA
Found at i:45774468 original size:19 final size:18
Alignment explanation
Indices: 45774431--45774469 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
45774421 CATTATTCAA
**
45774431 TATTATTTTAATATTATT
1 TATTATTTTAATAAAATT
45774449 TATTATTTTCAATAAAATT
1 TATTATTTT-AATAAAATT
45774468 TA
1 TA
45774470 AAATATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTATTTTAATAAAATT
Found at i:45774959 original size:26 final size:27
Alignment explanation
Indices: 45774926--45774988 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
45774916 AATAAAAATA
45774926 ACCAAAATATTAT-AATTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
45774952 ACCAAAATATTATAAATTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTATTT
45774979 ACCAAAATAT
1 ACCAAAATAT
45774989 ACCAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 13 0.36
27 23 0.64
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.48
Consensus pattern (27 bp):
ACCAAAATATTATAAATTTTTTTATTT
Found at i:45775641 original size:19 final size:18
Alignment explanation
Indices: 45775617--45775712 Score: 111
Period size: 19 Copynumber: 5.2 Consensus size: 18
45775607 TCTAATTAAG
*
45775617 TAATAACTCTATTTTAATT
1 TAATAA-TCTATTTTCATT
* *
45775636 TAATAAACTATTCTCATT
1 TAATAATCTATTTTCATT
*
45775654 TAATAATTCTATTTTAATT
1 TAATAA-TCTATTTTCATT
* *
45775673 TAATAAACTATTCTCATT
1 TAATAATCTATTTTCATT
45775691 TAATAACTCTATTTTCATT
1 TAATAA-TCTATTTTCATT
45775710 TAA
1 TAA
45775713 AATATAAAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
18 30 0.47
19 34 0.53
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATCTATTTTCATT
Found at i:45775658 original size:37 final size:37
Alignment explanation
Indices: 45775617--45775712 Score: 174
Period size: 37 Copynumber: 2.6 Consensus size: 37
45775607 TCTAATTAAG
45775617 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
*
45775654 TAATAATTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
*
45775691 TAATAACTCTATTTTCATTTAA
1 TAATAACTCTATTTTAATTTAA
45775713 AATATAAAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (37 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
Found at i:45775867 original size:82 final size:82
Alignment explanation
Indices: 45775773--45775937 Score: 321
Period size: 82 Copynumber: 2.0 Consensus size: 82
45775763 AGACTAAAAA
45775773 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
1 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
45775838 TTTATGTTTCCATTATT
66 TTTATGTTTCCATTATT
45775855 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
1 TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
*
45775920 TTTATGTTTCCGTTATT
66 TTTATGTTTCCATTATT
45775937 T
1 T
45775938 TTTTCCTTTT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.45
Consensus pattern (82 bp):
TAGTCTAACATGTTTATGTTATAAGTCTATTAAGAATATATTAAATTTATAAATAGATAAAATAG
TTTATGTTTCCATTATT
Found at i:45776043 original size:19 final size:19
Alignment explanation
Indices: 45776019--45776084 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
45776009 TTAATTTTTT
45776019 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
45776038 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
*
45776056 TTACATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
45776075 TTAAATTAAA
1 TTAAATTAAA
45776085 CTATTTTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:45776496 original size:28 final size:29
Alignment explanation
Indices: 45776464--45776519 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
45776454 TGTTTTTTTG
*
45776464 TTTTTTGGT-ATATTTTGATAAATAAAAT
1 TTTTTTGATAATATTTTGATAAATAAAAT
* *
45776492 TTTTTTTATAATATTTTGGTAAATAAAA
1 TTTTTTGATAATATTTTGATAAATAAAA
45776520 AAAAGTTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.54
Consensus pattern (29 bp):
TTTTTTGATAATATTTTGATAAATAAAAT
Found at i:45777307 original size:3 final size:3
Alignment explanation
Indices: 45777299--45777328 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
45777289 AGAGGGGTTG
45777299 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
45777329 AAGTTTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:45791732 original size:28 final size:29
Alignment explanation
Indices: 45791677--45791733 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
45791667 AATTGCTGTC
* *
45791677 TAATTAGTAAAAATATTTTTAATTAAATT
1 TAATTAGTAAAAATATTATTAATAAAATT
45791706 TAATTA-TAAAAATA-TATTAATGAAAATT
1 TAATTAGTAAAAATATTATTAAT-AAAATT
45791734 AATATTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 6 0.24
28 13 0.52
29 6 0.24
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (29 bp):
TAATTAGTAAAAATATTATTAATAAAATT
Found at i:45791743 original size:28 final size:28
Alignment explanation
Indices: 45791677--45791736 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
45791667 AATTGCTGTC
* * *
45791677 TAATTAGTAAAAATATTTTTAATTAAATT
1 TAATTA-TAAAAATATTATTAATGAAAAT
45791706 TAATTATAAAAATA-TATTAATGAAAAT
1 TAATTATAAAAATATTATTAATGAAAAT
45791733 TAAT
1 TAAT
45791737 ATTTAAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 14 0.50
28 8 0.29
29 6 0.21
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (28 bp):
TAATTATAAAAATATTATTAATGAAAAT
Found at i:45791752 original size:27 final size:26
Alignment explanation
Indices: 45791687--45791752 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
45791677 TAATTAGTAA
* *
45791687 AAATATTTTTAATTAAATTTAATTAT
1 AAATATTTTTAATGAAAATTAATTAT
* * *
45791713 AAAAATATATTAATGAAAATTAATATTT
1 AAATAT-TTTTAATGAAAATTAAT-TAT
45791741 AAATATTTTTAA
1 AAATATTTTTAA
45791753 CAATAATTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 5 0.16
27 19 0.61
28 7 0.23
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
AAATATTTTTAATGAAAATTAATTAT
Found at i:45792170 original size:11 final size:11
Alignment explanation
Indices: 45792156--45792190 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
45792146 CAAATGCCTC
45792156 TAAAATAATAG
1 TAAAATAATAG
*
45792167 TAAAATTAATAA
1 TAAAA-TAATAG
45792179 TAAAATAATAG
1 TAAAATAATAG
45792190 T
1 T
45792191 TATACAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (11 bp):
TAAAATAATAG
Found at i:45792201 original size:19 final size:19
Alignment explanation
Indices: 45792177--45792219 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
45792167 TAAAATTAAT
*
45792177 AATAAAATAATAGTTATAC
1 AATAAAATAATAGTAATAC
* *
45792196 AATAAAATAGTAGTAATAT
1 AATAAAATAATAGTAATAC
45792215 AATAA
1 AATAA
45792220 CGAAATGGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.30
Consensus pattern (19 bp):
AATAAAATAATAGTAATAC
Found at i:45793067 original size:28 final size:28
Alignment explanation
Indices: 45793036--45793089 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
45793026 TTTAGTAATT
45793036 AAATATAAAAT-TTTA-AGATTTTTTTATA
1 AAATA-AAAATATTTATA-ATTTTTTTATA
*
45793064 AAATACAAATATTTATAATTTTTTTA
1 AAATAAAAATATTTATAATTTTTTTA
45793090 ACAAGAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 4 0.17
28 18 0.78
29 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (28 bp):
AAATAAAAATATTTATAATTTTTTTATA
Found at i:45799184 original size:19 final size:19
Alignment explanation
Indices: 45799142--45799189 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
45799132 TACAAAAAAA
45799142 ATTATTAT--TAAATATTT
1 ATTATTATAATAAATATTT
* *
45799159 GTAATTATAATAAATATTT
1 ATTATTATAATAAATATTT
*
45799178 ATTATTAAAATA
1 ATTATTATAATA
45799190 TTAATATTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 6 0.25
19 18 0.75
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (19 bp):
ATTATTATAATAAATATTT
Found at i:45799299 original size:16 final size:15
Alignment explanation
Indices: 45799280--45799309 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
45799270 TGAAATATAA
45799280 AATAATTTATTATTTT
1 AATAATTTA-TATTTT
45799296 AATAATTTATATTT
1 AATAATTTATATTT
45799310 ATTATATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
AATAATTTATATTTT
Found at i:45799309 original size:22 final size:22
Alignment explanation
Indices: 45799284--45799327 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
45799274 ATATAAAATA
*
45799284 ATTTATTATTTTAATAATTTAT
1 ATTTATTATATTAATAATTTAT
45799306 ATTTATTATATTAATAATTTAT
1 ATTTATTATATTAATAATTTAT
45799328 TATATGGCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
ATTTATTATATTAATAATTTAT
Found at i:45802247 original size:50 final size:50
Alignment explanation
Indices: 45802163--45802265 Score: 131
Period size: 50 Copynumber: 2.1 Consensus size: 50
45802153 TTTCTTTATC
*
45802163 TTTTAGGGTTTAGTCTTCATCTTTATAAACTTAGGGTTTAATGTTTATAT
1 TTTTAGGGTTTAGTCTTCATCTTTATAAACTTAGGGTTTAAGGTTTATAT
* *
45802213 TTTTAGGGTTTAGTCTT-AT-TTTCCAT-AACTTTAGGTTTTAAGGTTTATGT
1 TTTTAGGGTTTAGTCTTCATCTTT--ATAAAC-TTAGGGTTTAAGGTTTATAT
45802263 TTT
1 TTT
45802266 ATCTGGTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
48 3 0.06
49 5 0.11
50 39 0.83
ACGTcount: A:0.21, C:0.08, G:0.17, T:0.54
Consensus pattern (50 bp):
TTTTAGGGTTTAGTCTTCATCTTTATAAACTTAGGGTTTAAGGTTTATAT
Found at i:45806260 original size:13 final size:13
Alignment explanation
Indices: 45806239--45806291 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
45806229 TGTAAACCAA
45806239 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
45806252 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
*
45806265 ACTTTTCCACAA-C
1 ACTTTT-CAAAAGC
45806278 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
45806291 A
1 A
45806292 TTGCCAAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 4 0.12
13 26 0.76
14 4 0.12
ACGTcount: A:0.38, C:0.28, G:0.06, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:45809356 original size:14 final size:13
Alignment explanation
Indices: 45809337--45809378 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
45809327 TAGTTTAGTT
45809337 TTAATTAAACTTAA
1 TTAATT-AACTTAA
45809351 TTAATTAACTTAA
1 TTAATTAACTTAA
45809364 TCATAATTAA-TTAA
1 T--TAATTAACTTAA
45809378 T
1 T
45809379 CACTAATCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 8 0.31
14 11 0.42
15 7 0.27
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (13 bp):
TTAATTAACTTAA
Found at i:45811700 original size:16 final size:16
Alignment explanation
Indices: 45811679--45811711 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
45811669 GTATTAAGCC
45811679 ATCCTTACCAAGCCAG
1 ATCCTTACCAAGCCAG
45811695 ATCCTTACCAAGCCAG
1 ATCCTTACCAAGCCAG
45811711 A
1 A
45811712 CTCTATTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.36, G:0.12, T:0.18
Consensus pattern (16 bp):
ATCCTTACCAAGCCAG
Found at i:45819815 original size:59 final size:61
Alignment explanation
Indices: 45819721--45819853 Score: 153
Period size: 59 Copynumber: 2.2 Consensus size: 61
45819711 GAGCATAAAG
* * * * *
45819721 AAAAGAAGAAGAGCTAATTAAGCTGAATATACTTCATTGGATGGCTCAAGCAAAAGTTAGAG-
1 AAAAGAA-AA-AGCTAATTAAGCTAAAAATACTTCATTAGACGACTCAAGCAAAAGTTAGAGC
* * * *
45819783 AAAA-AAAAAGCTCATTAAGCTAAAAATCCTTCATTAGACGACTTAAGCAAAAGTTAGTGC
1 AAAAGAAAAAGCTAATTAAGCTAAAAATACTTCATTAGACGACTCAAGCAAAAGTTAGAGC
45819843 AAAAGAAAAAG
1 AAAAGAAAAAG
45819854 AAAAAAAAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
59 42 0.70
60 6 0.10
61 8 0.13
62 4 0.07
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (61 bp):
AAAAGAAAAAGCTAATTAAGCTAAAAATACTTCATTAGACGACTCAAGCAAAAGTTAGAGC
Found at i:45822129 original size:12 final size:12
Alignment explanation
Indices: 45822112--45822141 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
45822102 TTAGGTTTCC
45822112 AAAATGGAAATA
1 AAAATGGAAATA
45822124 AAAATGGAAATA
1 AAAATGGAAATA
*
45822136 GAAATG
1 AAAATG
45822142 ATTCATTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (12 bp):
AAAATGGAAATA
Found at i:45826610 original size:2 final size:2
Alignment explanation
Indices: 45826603--45826688 Score: 84
Period size: 2 Copynumber: 42.5 Consensus size: 2
45826593 ATCAAGTTTA
* * * * *
45826603 AG AG AG AG AG AG A- ATT AG AA AG AG ATG AG AG TG AG TG AG TG AG
1 AG AG AG AG AG AG AG A-G AG AG AG AG A-G AG AG AG AG AG AG AG AG
* *
45826646 TG AG TG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
45826688 A
1 A
45826689 ATTAGAATAA
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
1 1 0.01
2 64 0.94
3 3 0.04
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (2 bp):
AG
Found at i:45826830 original size:17 final size:17
Alignment explanation
Indices: 45826810--45826842 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
45826800 TAATATTGGC
45826810 AAACAACCACAGAAATA
1 AAACAACCACAGAAATA
*
45826827 AAACAACCATAGAAAT
1 AAACAACCACAGAAAT
45826843 GTACTGTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.21, G:0.06, T:0.09
Consensus pattern (17 bp):
AAACAACCACAGAAATA
Found at i:45833150 original size:21 final size:21
Alignment explanation
Indices: 45833126--45833166 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
45833116 ATTTTGAATA
45833126 GTTTTT-TTTCTCTCTTTTTTC
1 GTTTTTATTTCTC-CTTTTTTC
45833147 GTTTTTAATTTCTCCTTTTT
1 GTTTTT-ATTTCTCCTTTTT
45833167 GTTTACTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.33
22 6 0.33
23 6 0.33
ACGTcount: A:0.05, C:0.17, G:0.05, T:0.73
Consensus pattern (21 bp):
GTTTTTATTTCTCCTTTTTTC
Found at i:45833476 original size:18 final size:16
Alignment explanation
Indices: 45833437--45833487 Score: 50
Period size: 18 Copynumber: 3.1 Consensus size: 16
45833427 AATAATAAGA
45833437 TTTAAT-TTTTTTAAT
1 TTTAATATTTTTTAAT
*
45833452 ATTAATATTTATTTCAAT
1 TTTAATATTT-TTT-AAT
* *
45833470 TTTAATATATTTAAAT
1 TTTAATATTTTTTAAT
45833486 TT
1 TT
45833488 CATAATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
15 5 0.17
16 8 0.28
17 5 0.17
18 11 0.38
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTAATATTTTTTAAT
Found at i:45834009 original size:42 final size:41
Alignment explanation
Indices: 45833808--45834047 Score: 261
Period size: 41 Copynumber: 5.8 Consensus size: 41
45833798 CCTTTCGGGT
* * *
45833808 CTTTAGCGGCGTTTTAT-TAAGAAGTGCCGCTAATGCTGTAGG-
1 CTTTAGCGGCGTTTT-TGGAA-AAGCGCCGCTAATGCTAT-GGC
* *
45833850 CTTTAGCGGCGTTTTT-GAATAAGCGCCGCTAATTCTATGGG
1 CTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGCTATGGC
* *
45833891 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTTTGGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTATGGC
* * * *
45833932 CTTTAGCAGCGTTTTTGTAAAAGCGCCACTAATGCTTTGGC
1 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTATGGC
* * * * *
45833973 CTTTAGCGGCATTTTCTGGAAAAGCACCGTTAATGCTAGGGT
1 CTTTAGCGGCGTTTT-TGGAAAAGCGCCGCTAATGCTATGGC
45834015 CTTTAGCGGCGTTTTCTGGAAAAGCGCCGCTAA
1 CTTTAGCGGCGTTTT-TGGAAAAGCGCCGCTAA
45834048 GGACATTTTA
Statistics
Matches: 171, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 2 0.01
41 103 0.60
42 66 0.39
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.32
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTATGGC
Found at i:45834817 original size:9 final size:9
Alignment explanation
Indices: 45834803--45834827 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
45834793 TTTTTAATTT
45834803 ATATTTTAA
1 ATATTTTAA
45834812 ATATTTTAA
1 ATATTTTAA
45834821 ATATTTT
1 ATATTTT
45834828 CTTATATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
ATATTTTAA
Found at i:45834988 original size:20 final size:21
Alignment explanation
Indices: 45834963--45835003 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45834953 TTAGGGACTA
*
45834963 GGGATT-ATGGTTTAAGGGTT
1 GGGATTCAAGGTTTAAGGGTT
*
45834983 GGGATTCAAGGTTTAGGGGTT
1 GGGATTCAAGGTTTAAGGGTT
45835004 AGGGGTTAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.20, C:0.02, G:0.41, T:0.37
Consensus pattern (21 bp):
GGGATTCAAGGTTTAAGGGTT
Found at i:45835032 original size:7 final size:7
Alignment explanation
Indices: 45834995--45835032 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
45834985 GATTCAAGGT
45834995 TTAGGGG
1 TTAGGGG
45835002 TTAGGGG
1 TTAGGGG
45835009 TTAGGGG
1 TTAGGGG
**
45835016 TTAGACG
1 TTAGGGG
45835023 TTAGGGG
1 TTAGGGG
45835030 TTA
1 TTA
45835033 AGAATTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.18, C:0.03, G:0.47, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:45835729 original size:83 final size:83
Alignment explanation
Indices: 45835541--45835732 Score: 199
Period size: 83 Copynumber: 2.3 Consensus size: 83
45835531 GTGTAATCTA
* * * * * * *
45835541 TTAGTGGCGTTTATGCTAGAAACGCCGCAAGGATGTATTAATGTTTTTCAAAACGTCACCGTTTC
1 TTAGTGGCGTTTTTCCTAAAAACGCCGCAAAGATGAATTAAAGTTTTTCAAAACGGCACCGTTTC
*
45835606 AGTTCAGGACTTAACATT
66 AGTTCAGAACTTAACATT
** * *
45835624 TTAGTGGCGTTTTTCCGGAAAACGCCGGAAATATGAATTAAAGTTTCTT-AAAACGGCACCGTTT
1 TTAGTGGCGTTTTTCCTAAAAACGCCGCAAAGATGAATTAAAGTTT-TTCAAAACGGCACCGTTT
** * *
45835688 CTTTTCAGTAAGTTAA-TTT
65 CAGTTCAG-AACTTAACATT
*
45835707 TTAGTGGCGTTTTTTCTAAAAACGCC
1 TTAGTGGCGTTTTTCCTAAAAACGCC
45835733 ACAACTATAT
Statistics
Matches: 88, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
83 81 0.92
84 7 0.08
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (83 bp):
TTAGTGGCGTTTTTCCTAAAAACGCCGCAAAGATGAATTAAAGTTTTTCAAAACGGCACCGTTTC
AGTTCAGAACTTAACATT
Found at i:45836178 original size:83 final size:83
Alignment explanation
Indices: 45835990--45836211 Score: 225
Period size: 83 Copynumber: 2.7 Consensus size: 83
45835980 GTGTAATCTA
* * * * * *
45835990 TTAGTGGCGTTTATGCTAAAAACGCCGCAATTATGTATTAATGTTT-TTCAAACCGTCACTGTTT
1 TTAGTGGCGTTTTTGCTAAAAACGCCGCAAATATGTATTAAAGTTTCTT-AAAACGGCACCGTTT
* * *
45836054 CTCTTCAGGACTTGAAATT
65 CTATTCAGAACGTGAAATT
** * * *
45836073 TTAGTGGCGTTTTT-CGGGAAAACGCCGGAACTATGGATTAAAGTTTCTTAAAACGGCACCGTTT
1 TTAGTGGCGTTTTTGC-TAAAAACGCCGCAAATATGTATTAAAGTTTCTTAAAACGGCACCGTTT
* *
45836137 CTATTCAGTAAGGT-AATTT
65 CTATTCAG-AACGTGAAATT
* * *
45836156 TTAGTGGCGTTTTTGCTAAAAACGCCGCAAATATATATTTAAGGTTCTTAAAACGG
1 TTAGTGGCGTTTTTGCTAAAAACGCCGCAAATATGTATTAAAGTTTCTTAAAACGG
45836212 TGCTGTTTCA
Statistics
Matches: 112, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
82 1 0.01
83 106 0.95
84 5 0.04
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (83 bp):
TTAGTGGCGTTTTTGCTAAAAACGCCGCAAATATGTATTAAAGTTTCTTAAAACGGCACCGTTTC
TATTCAGAACGTGAAATT
Found at i:45837228 original size:12 final size:12
Alignment explanation
Indices: 45837213--45837244 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
45837203 ATTCTTGGGT
45837213 TTTGTTTTCTAG
1 TTTGTTTTCTAG
45837225 TTTGTTTTCTAG
1 TTTGTTTTCTAG
*
45837237 TCTGTTTT
1 TTTGTTTT
45837245 GCGAGATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.09, G:0.16, T:0.69
Consensus pattern (12 bp):
TTTGTTTTCTAG
Found at i:45838467 original size:13 final size:13
Alignment explanation
Indices: 45838421--45838512 Score: 91
Period size: 13 Copynumber: 6.9 Consensus size: 13
45838411 TATAACTTAC
45838421 ATTACTTAAATAT
1 ATTACTTAAATAT
* *
45838434 ATTAATTACTAAAAT
1 ATTACTTA--AATAT
45838449 -TTACTTAAATAT
1 ATTACTTAAATAT
*
45838461 ATTACTTAAATAC
1 ATTACTTAAATAT
45838474 ATTACTTACTAGA-AT
1 ATTACTTA--A-ATAT
45838489 -TTACTTAAATAT
1 ATTACTTAAATAT
45838501 ATTACTTAAATA
1 ATTACTTAAATA
45838513 CATGACTTAC
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
11 1 0.02
12 7 0.11
13 37 0.57
14 13 0.20
15 6 0.09
16 1 0.02
ACGTcount: A:0.46, C:0.10, G:0.01, T:0.43
Consensus pattern (13 bp):
ATTACTTAAATAT
Found at i:45838469 original size:40 final size:38
Alignment explanation
Indices: 45838404--45838655 Score: 208
Period size: 40 Copynumber: 6.5 Consensus size: 38
45838394 TATATATATT
* * * *
45838404 TAAAATTTATAACTTACATTACTTAAATATATTAATTAC
1 TAAAATTTATAA-ATATATTACTTAAATACATTACTTAC
45838443 TAAAATTTACTTAAATATATTACTTAAATACATTACTTAC
1 TAAAATTTA--TAAATATATTACTTAAATACATTACTTAC
* *
45838483 TAGAATTTACTTAAATATATTACTTAAATACATGACTTAC
1 TAAAATTTA--TAAATATATTACTTAAATACATTACTTAC
* **
45838523 TAAAA-TTA-AAGTATTTATTACATTACTTACATTACTTAC
1 TAAAATTTATAA--ATATATTAC-TTAAATACATTACTTAC
* * *
45838562 TAAAA--TAT-ATTACATTACTTAAATATATTACTTAC
1 TAAAATTTATAAATATATTACTTAAATACATTACTTAC
* * * *
45838597 AAAAATTTATAACTTACATTACTTAAATATATTACATTAC
1 TAAAATTTATAA-ATATATTACTTAAATACATTAC-TTAC
* *
45838637 TTAAATTTTATATATATAT
1 -TAAAATTTATAAATATAT
45838656 ATTTAAAATT
Statistics
Matches: 178, Mismatches: 23, Indels: 23
0.79 0.10 0.10
Matches are distributed among these distances:
35 18 0.10
36 8 0.04
37 3 0.02
38 12 0.07
39 53 0.30
40 72 0.40
41 12 0.07
ACGTcount: A:0.44, C:0.11, G:0.01, T:0.43
Consensus pattern (38 bp):
TAAAATTTATAAATATATTACTTAAATACATTACTTAC
Found at i:45838520 original size:13 final size:13
Alignment explanation
Indices: 45838418--45838521 Score: 79
Period size: 13 Copynumber: 7.8 Consensus size: 13
45838408 ATTTATAACT
45838418 TACATTACTTAAA
1 TACATTACTTAAA
* *
45838431 TATATTAATTACTAA
1 TACATTACTTA--AA
45838446 -A-ATTTACTTAAA
1 TACA-TTACTTAAA
*
45838458 TATATTACTTAAA
1 TACATTACTTAAA
*
45838471 TACATTACTT-AC
1 TACATTACTTAAA
*
45838483 TAGAATTTACTTAAA
1 TA-CA-TTACTTAAA
*
45838498 TATATTACTTAAA
1 TACATTACTTAAA
*
45838511 TACATGACTTA
1 TACATTACTTA
45838522 CTAAAATTAA
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
12 5 0.07
13 48 0.66
14 15 0.21
15 5 0.07
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (13 bp):
TACATTACTTAAA
Found at i:45838577 original size:22 final size:21
Alignment explanation
Indices: 45838549--45838639 Score: 72
Period size: 22 Copynumber: 4.6 Consensus size: 21
45838539 ATTACATTAC
45838549 TTACATTACTTACTAAAATATA
1 TTACATTACTTA-TAAAATATA
45838571 TTACATTAC-T-T-AAATATA
1 TTACATTACTTATAAAATATA
*
45838589 TTAC-TTAC--A-AAAATTTA
1 TTACATTACTTATAAAATATA
* *
45838606 TAAC-TTACATTACTTAAATATA
1 TTACATTAC-TTA-TAAAATATA
45838628 TTACATTACTTA
1 TTACATTACTTA
45838640 AATTTTATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
17 17 0.30
18 11 0.20
19 1 0.02
20 1 0.02
21 1 0.02
22 21 0.38
23 4 0.07
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.43
Consensus pattern (21 bp):
TTACATTACTTATAAAATATA
Found at i:45838579 original size:18 final size:18
Alignment explanation
Indices: 45838553--45838642 Score: 103
Period size: 18 Copynumber: 4.9 Consensus size: 18
45838543 CATTACTTAC
*
45838553 ATTAC-TTACTAAAATAT
1 ATTACATTACTTAAATAT
45838570 ATTACATTACTTAAATAT
1 ATTACATTACTTAAATAT
**
45838588 ATTAC-TTACAAAAATTTAT
1 ATTACATTACTTAAA--TAT
45838607 AACTTACATTACTTAAATAT
1 -A-TTACATTACTTAAATAT
45838627 ATTACATTACTTAAAT
1 ATTACATTACTTAAAT
45838643 TTTATATATA
Statistics
Matches: 62, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
17 12 0.19
18 31 0.50
19 4 0.06
20 4 0.06
21 4 0.06
22 7 0.11
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTACATTACTTAAATAT
Found at i:45838602 original size:17 final size:17
Alignment explanation
Indices: 45838553--45838614 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
45838543 CATTACTTAC
*
45838553 ATTACTTACTAAAATAT
1 ATTACTTACAAAAATAT
**
45838570 ATTACATTACTTAAATAT
1 ATTAC-TTACAAAAATAT
*
45838588 ATTACTTACAAAAATTT
1 ATTACTTACAAAAATAT
*
45838605 ATAACTTACA
1 ATTACTTACA
45838615 TTACTTAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
17 23 0.59
18 16 0.41
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTACTTACAAAAATAT
Found at i:45838808 original size:121 final size:121
Alignment explanation
Indices: 45838669--45839108 Score: 817
Period size: 121 Copynumber: 3.6 Consensus size: 121
45838659 TAAAATTTAT
* *
45838669 ATATATGGTATGAATATATAACCTATATTTCAATTTTATTGTCAATAAATTTTATAATTTTAAAA
1 ATATATGGTATGGATATATAACCTATATGTCAATTTTATTGTCAATAAATTTTATAATTTTAAAA
45838734 ATAATTGTAAATGTTATTTTTAAATATTAAAACCTATATTTTTAATATATCACCCC
66 ATAATTGTAAATGTTATTTTTAAATATTAAAACCTATATTTTTAATATATCACCCC
*
45838790 ATAAATGGTATGGATATATAACCTATATGTCAATTTTATTGTCAATAAATTTTATAATTTTAAAA
1 ATATATGGTATGGATATATAACCTATATGTCAATTTTATTGTCAATAAATTTTATAATTTTAAAA
45838855 ATAATTGTAAATGTTATTTTTAAATATTAAAACCTATATTTTTAATATATCACCCC
66 ATAATTGTAAATGTTATTTTTAAATATTAAAACCTATATTTTTAATATATCACCCC
* * *
45838911 ATATATGGTATGGATATATAACCTATATGTCAGTTTTATTGTCAATAAATTTTAAAATTTAAAAA
1 ATATATGGTATGGATATATAACCTATATGTCAATTTTATTGTCAATAAATTTTATAATTTTAAAA
45838976 ATAATTGTAAATGTTATTTTTAAATATTAAAACCTATATTTTTAATATATCACCCC
66 ATAATTGTAAATGTTATTTTTAAATATTAAAACCTATATTTTTAATATATCACCCC
45839032 ATATATGGTATGGATATATAACCTATATGTCAATTTTATTGTCAATAAATTTTATAATTTTAAAA
1 ATATATGGTATGGATATATAACCTATATGTCAATTTTATTGTCAATAAATTTTATAATTTTAAAA
*
45839097 ATAATTATAAAT
66 ATAATTGTAAAT
45839109 AGGATACATA
Statistics
Matches: 308, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
121 308 1.00
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (121 bp):
ATATATGGTATGGATATATAACCTATATGTCAATTTTATTGTCAATAAATTTTATAATTTTAAAA
ATAATTGTAAATGTTATTTTTAAATATTAAAACCTATATTTTTAATATATCACCCC
Found at i:45839173 original size:9 final size:9
Alignment explanation
Indices: 45839155--45839358 Score: 121
Period size: 9 Copynumber: 23.8 Consensus size: 9
45839145 CTTATATATA
*
45839155 AACTTGCAT
1 AACTTACAT
45839164 AACTTACAT
1 AACTTACAT
*
45839173 AA-TAACATAAT
1 AACTTAC---AT
45839184 AACTTACAT
1 AACTTACAT
45839193 AA--TACAT
1 AACTTACAT
* *
45839200 AGCCTACAT
1 AACTTACAT
45839209 AACTTACAT
1 AACTTACAT
*
45839218 AA--TACAC
1 AACTTACAT
45839225 AACTTACAT
1 AACTTACAT
45839234 AA--TACAT
1 AACTTACAT
**
45839241 AACTTTGAT
1 AACTTACAT
*
45839250 AACTAACAT
1 AACTTACAT
* *
45839259 TA--TACAC
1 AACTTACAT
45839266 AACTTACAT
1 AACTTACAT
45839275 AA--TACAT
1 AACTTACAT
* *
45839282 TACTTACTT
1 AACTTACAT
45839291 AA-TATACAT
1 AACT-TACAT
* * *
45839300 AGCCTACAA
1 AACTTACAT
45839309 AACTTACAT
1 AACTTACAT
*
45839318 AA--TACAC
1 AACTTACAT
45839325 AACTTACAT
1 AACTTACAT
*
45839334 AACTTAAAT
1 AACTTACAT
45839343 AACTTACAT
1 AACTTACAT
45839352 AACTTAC
1 AACTTAC
45839359 TTGTGCAATT
Statistics
Matches: 145, Mismatches: 32, Indels: 36
0.68 0.15 0.17
Matches are distributed among these distances:
7 35 0.24
8 4 0.03
9 99 0.68
11 4 0.03
12 3 0.02
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (9 bp):
AACTTACAT
Found at i:45839187 original size:20 final size:19
Alignment explanation
Indices: 45839162--45839200 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
45839152 ATAAACTTGC
45839162 ATAACTTACATAATAACATA
1 ATAACTTACATAAT-ACATA
45839182 ATAACTTACATAATACATA
1 ATAACTTACATAATACATA
45839201 GCCTACATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAACTTACATAATACATA
Done.