Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 154 of 189
Found at i:46266376 original size:187 final size:188
Alignment explanation
Indices: 46266048--46266422 Score: 536
Period size: 187 Copynumber: 2.0 Consensus size: 188
46266038 ACTGCCAGAG
** *
46266048 AAGTAAGATTTGCCGTTACGGCTTCAATCTTTTAAATTGTAATGTCGGGGAAGCAAGATTCACCG
1 AAGTAAGATTCACCGTTACGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCG
** * *
46266113 TTGTAGCTTCAATCTGCTCCACTGCACTGCCAAGGAAGTAAGATTTACCATTGCGACTTCAATCT
66 TCATAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGTAAGATTTACCATTGCGACTTCAATAT
** ** * * * * *
46266178 TTTTTATTGCAATGTCGGGG-AATAAGATTCACCGTTGTAGCTTTAATCTGTTCCACT
131 TTTAAATTGCAATACCGGGGAAACAAGATTCACCATCGTAGCTTCAATCTATTCCACT
*
46266235 AAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCG
1 AAGTAAGATTCACCGTTACGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCG
* * * * *
46266300 TCATAGCTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATTTTCCGTTGCGGCTTTAATAT
66 TCATAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGTAAGATTTACCATTGCGACTTCAATAT
*
46266365 TTTAAATTGCAATACCGGGGAAACAAGATTCACTATCGTAGCTTCAATCTATTCCACT
131 TTTAAATTGCAATACCGGGGAAACAAGATTCACCATCGTAGCTTCAATCTATTCCACT
46266423 GCACCGCGAG
Statistics
Matches: 164, Mismatches: 23, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
187 133 0.81
188 31 0.19
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (188 bp):
AAGTAAGATTCACCGTTACGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCACCG
TCATAGCTTCAATCTGCTCCACTGCACCGCCAAGGAAGTAAGATTTACCATTGCGACTTCAATAT
TTTAAATTGCAATACCGGGGAAACAAGATTCACCATCGTAGCTTCAATCTATTCCACT
Found at i:46267825 original size:8 final size:8
Alignment explanation
Indices: 46267803--46267851 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
46267793 CCGGTAGAGG
46267803 TTTTTTTA
1 TTTTTTTA
** *
46267811 TGCTTTTG
1 TTTTTTTA
46267819 TTTTTTTA
1 TTTTTTTA
46267827 TTATTTTTTA
1 -T-TTTTTTA
46267837 TTTTTTTA
1 TTTTTTTA
46267845 TTTTTTT
1 TTTTTTT
46267852 TGCCTCCATT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
8 24 0.73
9 2 0.06
10 7 0.21
ACGTcount: A:0.10, C:0.02, G:0.04, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:46267833 original size:10 final size:9
Alignment explanation
Indices: 46267819--46267852 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
46267809 TATGCTTTTG
46267819 TTTTTTTAT
1 TTTTTTTAT
46267828 TATTTTTTA-
1 T-TTTTTTAT
46267837 TTTTTTTAT
1 TTTTTTTAT
46267846 TTTTTTT
1 TTTTTTT
46267853 GCCTCCATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 7 0.30
9 9 0.39
10 7 0.30
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:46267835 original size:18 final size:17
Alignment explanation
Indices: 46267814--46267853 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
46267804 TTTTTTATGC
46267814 TTTTGTTTTTTTATTATT
1 TTTTGTTTTTTTATT-TT
*
46267832 TTTTATTTTTTTATTTT
1 TTTTGTTTTTTTATTTT
46267849 TTTTG
1 TTTTG
46267854 CCTCCATTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.10, C:0.00, G:0.05, T:0.85
Consensus pattern (17 bp):
TTTTGTTTTTTTATTTT
Found at i:46270553 original size:24 final size:25
Alignment explanation
Indices: 46270526--46270579 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
46270516 GGGTTTTTTC
*
46270526 ATGAAATTTAATGCAAATG-ATGCA
1 ATGAAATGTAATGCAAATGAATGCA
* *
46270550 ATGAAATGTAATGCAGATGAATGGA
1 ATGAAATGTAATGCAAATGAATGCA
46270575 ATGAA
1 ATGAA
46270580 TGCAAAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.46, C:0.06, G:0.22, T:0.26
Consensus pattern (25 bp):
ATGAAATGTAATGCAAATGAATGCA
Found at i:46292297 original size:23 final size:22
Alignment explanation
Indices: 46292245--46292297 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
46292235 TCCACGTCTT
*
46292245 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
46292267 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
46292290 TTTCTTTT
1 TTTCTTTT
46292298 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:46294908 original size:17 final size:17
Alignment explanation
Indices: 46294886--46294918 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
46294876 CGATGTGCTC
46294886 AAAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAGAAAA
*
46294903 AAAAAAGAAAAAGAAA
1 AAAAAAAAAAAAGAAA
46294919 GCAATATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAGAAAA
Found at i:46294919 original size:10 final size:11
Alignment explanation
Indices: 46294888--46294914 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
46294878 ATGTGCTCAA
46294888 AAAAAAAAAAG
1 AAAAAAAAAAG
46294899 AAAAAAAAAAG
1 AAAAAAAAAAG
46294910 AAAAA
1 AAAAA
46294915 GAAAGCAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:46295025 original size:17 final size:19
Alignment explanation
Indices: 46295003--46295043 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
46294993 TATTGAGGTT
46295003 AAATATAA-ATAT-TAATA
1 AAATATAATATATATAATA
*
46295020 AAATATAATATATATATTA
1 AAATATAATATATATAATA
46295039 AAATA
1 AAATA
46295044 ATTTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 9 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AAATATAATATATATAATA
Found at i:46295053 original size:24 final size:23
Alignment explanation
Indices: 46295001--46295058 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 23
46294991 AATATTGAGG
*
46295001 TTAAATATAAATATTAATAAAAT
1 TTAAATATATATATTAATAAAAT
*
46295024 AT-AATATATATATTAA-AATAATT
1 TTAAATATATATATTAATAA-AA-T
*
46295047 TTAAATACATAT
1 TTAAATATATAT
46295059 CCATCCAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
21 2 0.07
22 15 0.54
23 3 0.11
24 8 0.29
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
TTAAATATATATATTAATAAAAT
Found at i:46295492 original size:30 final size:30
Alignment explanation
Indices: 46295456--46295518 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
46295446 ACTTAACAAG
46295456 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
* *
46295486 CAAATGTCTTTAAAATAATAATAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
46295516 CAA
1 CAA
46295519 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:46297913 original size:21 final size:21
Alignment explanation
Indices: 46297889--46297930 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
46297879 GATACTTCCA
46297889 AATTTCCACCATACAAAATGC
1 AATTTCCACCATACAAAATGC
46297910 AATTTCCACCATACAAAATGC
1 AATTTCCACCATACAAAATGC
46297931 CTATAAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.29, G:0.05, T:0.24
Consensus pattern (21 bp):
AATTTCCACCATACAAAATGC
Found at i:46299569 original size:21 final size:21
Alignment explanation
Indices: 46299531--46299580 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
46299521 TTTTAGTTTA
*
46299531 TTTTATTAATATAGTTATTTT
1 TTTTATTAATATAGTTATTAT
*
46299552 TTTTATTACTATTA-TTATTAT
1 TTTTATTAATA-TAGTTATTAT
*
46299573 ATTTATTA
1 TTTTATTA
46299581 TACTTACATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 23 0.92
22 2 0.08
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTTATTAATATAGTTATTAT
Found at i:46299703 original size:13 final size:12
Alignment explanation
Indices: 46299682--46299720 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
46299672 TTTTATTACC
*
46299682 ATATTTTTATAT
1 ATATATTTATAT
46299694 ATATAGTTTATAT
1 ATATA-TTTATAT
46299707 ATATATATTATAT
1 ATATAT-TTATAT
46299720 A
1 A
46299721 AATTCATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 5 0.21
13 19 0.79
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (12 bp):
ATATATTTATAT
Found at i:46299759 original size:25 final size:26
Alignment explanation
Indices: 46299731--46299790 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
46299721 AATTCATATT
46299731 TTTTATAATT-ATTTATGTTT-T-CATG
1 TTTTATAATTCA--TATGTTTATACATG
*
46299756 TTTTATAATTCATATGTTTATACATT
1 TTTTATAATTCATATGTTTATACATG
46299782 TTTTATAAT
1 TTTTATAAT
46299791 ATGTACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 7 0.23
25 11 0.35
26 13 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
TTTTATAATTCATATGTTTATACATG
Found at i:46299759 original size:26 final size:26
Alignment explanation
Indices: 46299728--46299790 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
46299718 ATAAATTCAT
46299728 ATTTTTTATAATT-ATTTATGTTT-T-C
1 ATTTTTTATAATTCA--TATGTTTATAC
*
46299753 ATGTTTTATAATTCATATGTTTATAC
1 ATTTTTTATAATTCATATGTTTATAC
46299779 ATTTTTTATAAT
1 ATTTTTTATAAT
46299791 ATGTACAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 7 0.21
25 13 0.39
26 13 0.39
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
ATTTTTTATAATTCATATGTTTATAC
Found at i:46304806 original size:23 final size:23
Alignment explanation
Indices: 46304774--46304823 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
46304764 AGTCGCAAAA
*
46304774 AAAAAGATGAGAAATGAAAAAGT
1 AAAAAGATGAAAAATGAAAAAGT
*
46304797 GAAAAA-ATGAAAAATGGAAAAGT
1 -AAAAAGATGAAAAATGAAAAAGT
46304820 AAAA
1 AAAA
46304824 TGGAGAGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 4 0.17
23 15 0.62
24 5 0.21
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (23 bp):
AAAAAGATGAAAAATGAAAAAGT
Found at i:46306170 original size:44 final size:43
Alignment explanation
Indices: 46306121--46307095 Score: 234
Period size: 44 Copynumber: 22.2 Consensus size: 43
46306111 ATACTAATTC
* *
46306121 TATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCT
1 TATCTCCCTGGTT-GCAGTGGAGTAGATTGAAGATGTCAGATCT
* * * *
46306165 TATCTCCCTAGGCATT--AGTGGAGCAGATCGAAGATGGCAGATTT
1 TATCTCCCT-GG--TTGCAGTGGAGTAGATTGAAGATGTCAGATCT
* * * **
46306209 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCGT-A-AT-T
1 TATCTCCC--TGGTTGCAGTGGAGTAGATTGAAGATGTCAGATCT
* * *
46306251 CTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCATATCT
1 -TATCTCCCTGGTT-GCAGTGGAGTAGATTGAAGATGTCAGATCT
* * * *
46306296 TATCTCCCTAGGCATT--AGTGGAGCAGATCGAAGATGGCAGATTT
1 TATCTCCCT-GG--TTGCAGTGGAGTAGATTGAAGATGTCAGATCT
* * * ***
46306340 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAT-A-AT-T
1 TATCTCCC--TGGTTGCAGTGGAGTAGATTGAAGATGTCAGATCT
* *
46306382 CTATCTCCCTGGTTGGCAGTGGAATTGATTGAAGAT-TACAGATCT
1 -TATCTCCCTGGTT-GCAGTGGAGTAGATTGAAGATGT-CAGATCT
* * *
46306427 TATCTCCCTAGGCATT--AGTGGAGTAGGTCGAAGATGGT-AGATTT
1 TATCTCCCT-GG--TTGCAGTGGAGTAGATTGAAGAT-GTCAGATCT
* ** *
46306471 TACCTCCCTGAGGTTATAGTGGAGTACATTGAAGCCA-GT-A-AT-T
1 TATCTCCCT--GGTTGCAGTGGAGTAGATTGAAG--ATGTCAGATCT
* * * *
46306514 CTGTCTCCCTAGGTAGTAGTGGAATAGATTGAAGAT-TACAGATCT
1 -TATCTCCCT-GGTTGCAGTGGAGTAGATTGAAGATGT-CAGATCT
* ** * ** * *
46306559 TATCTCTCTAGGCAGTAGTGGAGTAGATCAAAGATGGCAGATTT
1 TATCTCCCT-GGTTGCAGTGGAGTAGATTGAAGATGTCAGATCT
* * * *
46306603 TACCTCCCTAAGGTTACAGTGGAGTACATT-AA-A-GCCAGTAAT-T
1 TATCTCCCT--GGTTGCAGTGGAGTAGATTGAAGATGTCAG--ATCT
* ** *
46306646 CTATCTCTCTGGGCAGCAGTGGAATAGATTGAAGAT-TACAGATCT
1 -TATCTCCCT-GGTTGCAGTGGAGTAGATTGAAGATGT-CAGATCT
* * * *
46306691 TATCTCCCTAGGCATT--AGTAGAGTAGATCGAAGATGGCAGATTT
1 TATCTCCCT-GG--TTGCAGTGGAGTAGATTGAAGATGTCAGATCT
* * * * *
46306735 TACCTCCCTGAGGTTACAATGGAGTACATTGAAGCCA-G--AAAT-T
1 TATCTCCCT--GGTTGCAGTGGAGTAGATTGAAG--ATGTCAGATCT
** *
46306778 CTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGAT-TACAGATCT
1 -TATCTCCCT-GGTTGCAGTGGAGTAGATTGAAGATGT-CAGATCT
* * * *
46306823 TATCTCTCTAGGCATT--AGTGGAGTAGATCGAAGATGGCAGATTT
1 TATCTCCCT-GG--TTGCAGTGGAGTAGATTGAAGATGTCAGATCT
* * * * * *
46306867 TACCTCCTTGAGGTTACAATGAAGTACATTGAAGCCA-GT-A-AT-T
1 TATCTCCCT--GGTTGCAGTGGAGTAGATTGAAG--ATGTCAGATCT
** * * *
46306910 CTATCTCCCTGGGCAGCAGTGGAATTGATTGAAGATTTCAGATCT
1 -TATCTCCCT-GGTTGCAGTGGAGTAGATTGAAGATGTCAGATCT
* * ** * * * * *
46306955 TATCTCCTTAAGCGGTAGTGGAGCAGATCGAAGATGGC-GAATTT
1 TATCTCCCT-GGTTGCAGTGGAGTAGATTGAAGATGTCAG-ATCT
* * *
46306999 TACCTCCCTGGGGTTACAGTGGAGTACATTGAAGCCA-GT-A-AT-T
1 TATCTCCCT--GGTTGCAGTGGAGTAGATTGAAG--ATGTCAGATCT
* * *
46307042 CTATCCCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCT
1 -TATCTCCCTGGTT-GCAGTGGAGTAGATTGAAGATGTCAGATCT
*
46307087 TATTTCCCT
1 TATCTCCCT
46307096 AAGCATTAGT
Statistics
Matches: 677, Mismatches: 165, Indels: 178
0.66 0.16 0.17
Matches are distributed among these distances:
41 16 0.02
42 44 0.06
43 123 0.18
44 346 0.51
45 129 0.19
46 9 0.01
47 10 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (43 bp):
TATCTCCCTGGTTGCAGTGGAGTAGATTGAAGATGTCAGATCT
Found at i:46306580 original size:132 final size:131
Alignment explanation
Indices: 46306115--46307246 Score: 1624
Period size: 132 Copynumber: 8.6 Consensus size: 131
46306105 TCGAAGATAC
* *
46306115 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGG-TAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* *
46306180 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
65 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
46306245 -G
130 AG
* * *
46306246 TAATTCTATCTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCATATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGG-TAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* *
46306311 TAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
65 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
46306376 A-
130 AG
* *
46306377 TAATTCTATCTCCCTGGTTGGCAGTGGAATTGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCTGG-TAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* * *
46306442 TAGTGGAGTAGGTCGAAGATGGTAGATTTTACCTCCCTGAGGTTATAGTGGAGTACATTGAAGCC
65 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
46306507 AG
130 AG
* * * *
46306509 TAATTCTGTCTCCCTAGGTAGTAGTGGAATAGATTGAAGATTACAGATCTTATCTCTCTAGGCAG
1 TAATTCTATCTCCCT-GGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* * *
46306574 TAGTGGAGTAGATCAAAGATGGCAGATTTTACCTCCCTAAGGTTACAGTGGAGTACATTAAAGCC
65 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
46306639 AG
130 AG
* *
46306641 TAATTCTATCTCTCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
1 TAATTCTATCTCCCT-GGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* *
46306706 TAGTAGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCC
65 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
46306771 AG
130 AG
* * *
46306773 AAATTCTATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCTCTAGGCAT
1 TAATTCTATCTCCCT-GGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* * *
46306838 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCTTGAGGTTACAATGAAGTACATTGAAGCC
65 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCC
46306903 AG
130 AG
* * * * * **
46306905 TAATTCTATCTCCCTGGGCAGCAGTGGAATTGATTGAAGATTTCAGATCTTATCTCCTTAAGCGG
1 TAATTCTATCTCCCT-GGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* *
46306970 TAGTGGAGCAGATCGAAGATGGC-GAATTTTACCTCCCTGGGGTTACAGTGGAGTACATTGAAGC
65 TAGTGGAGTAGATCGAAGATGGCAG-ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGC
46307034 CAG
129 CAG
* * * * *
46307037 TAATTCTATCCCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCTAAGCAT
1 TAATTCTATCTCCCTGG-TAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCAT
* *
46307102 TAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-GGATTACAGTGGAGTACATTGAAGC
65 TAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGG-TTACAGTGGAGTACATTGAAGC
46307166 CAG
129 CAG
* * * * * * * *
46307169 TAATTCTATCTCCTTGGTCGATAGTGGAATCGATCGAAGAATAGAAGATCTTATCTCCCTAAGCA
1 TAATTCTATCTCCCTGGTAG-CAGTGGAATAGATTGAAGATTA-CAGATCTTATCTCCCTAGGCA
*
46307234 GTAGTGGAGTAGA
64 TTAGTGGAGTAGA
46307247 CTGATAACGG
Statistics
Matches: 917, Mismatches: 75, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
131 259 0.28
132 625 0.68
133 33 0.04
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (131 bp):
TAATTCTATCTCCCTGGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGCATT
AGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCA
G
Found at i:46308881 original size:13 final size:13
Alignment explanation
Indices: 46308850--46308874 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46308840 TTACCATATT
46308850 TTTATATATATAG
1 TTTATATATATAG
46308863 TTTATATATATA
1 TTTATATATATA
46308875 TTATATACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTTATATATATAG
Found at i:46308920 original size:25 final size:26
Alignment explanation
Indices: 46308892--46308951 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
46308882 CATTCATATT
46308892 TTTTATAATT-ATTTATGTTT-T-CATG
1 TTTTATAATTCA--TATGTTTATACATG
*
46308917 TTTTATAATTCATATGTTTATACATT
1 TTTTATAATTCATATGTTTATACATG
46308943 TTTTATAAT
1 TTTTATAAT
46308952 ATGTACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 7 0.23
25 11 0.35
26 13 0.42
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
TTTTATAATTCATATGTTTATACATG
Found at i:46308920 original size:26 final size:26
Alignment explanation
Indices: 46308889--46308951 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
46308879 ATACATTCAT
46308889 ATTTTTTATAATT-ATTTATGTTT-T-C
1 ATTTTTTATAATTCA--TATGTTTATAC
*
46308914 ATGTTTTATAATTCATATGTTTATAC
1 ATTTTTTATAATTCATATGTTTATAC
46308940 ATTTTTTATAAT
1 ATTTTTTATAAT
46308952 ATGTACAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 7 0.21
25 13 0.39
26 13 0.39
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (26 bp):
ATTTTTTATAATTCATATGTTTATAC
Found at i:46312996 original size:18 final size:18
Alignment explanation
Indices: 46312973--46313009 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
46312963 TAACATGGGG
46312973 CATTAGTTGTTGGCATCT
1 CATTAGTTGTTGGCATCT
46312991 CATTAGTTGTTGGCATCT
1 CATTAGTTGTTGGCATCT
46313009 C
1 C
46313010 TTTGCGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.43
Consensus pattern (18 bp):
CATTAGTTGTTGGCATCT
Found at i:46314911 original size:5 final size:5
Alignment explanation
Indices: 46314893--46314931 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
46314883 TACTTCAATT
* *
46314893 GAAAA AAAAA GAAAC GAAAA GAAAAA GAAAA GAAAA GAA
1 GAAAA GAAAA GAAAA GAAAA G-AAAA GAAAA GAAAA GAA
46314932 GAAAGAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:46314919 original size:16 final size:16
Alignment explanation
Indices: 46314893--46314940 Score: 71
Period size: 16 Copynumber: 3.0 Consensus size: 16
46314883 TACTTCAATT
*
46314893 GAAAA-AAAAAGAAAC
1 GAAAAGAAAAAGAAAA
46314908 GAAAAGAAAAAGAAAA
1 GAAAAGAAAAAGAAAA
46314924 GAAAAGAAGAAAGAAAA
1 GAAAAGAA-AAAGAAAA
46314941 AGAGAGGCCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 5 0.17
16 17 0.57
17 8 0.27
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (16 bp):
GAAAAGAAAAAGAAAA
Found at i:46315978 original size:45 final size:45
Alignment explanation
Indices: 46315884--46316257 Score: 347
Period size: 45 Copynumber: 8.4 Consensus size: 45
46315874 GGAGCAGGCT
* * * * * *
46315884 GAAGATAGCAGATCTTGTC-TCCT-TGAGTAGCAGTGGAGTAGGTC
1 GAAGATAGTAGATCTTGTCTTCCTGT-ATTGGCAGCGAAGTAGATC
* * * * *
46315928 AAAGATTGTAGCTCTTGTCTTCCTGTATTGGTAGTGAAGTAGATC
1 GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
*
46315973 GAAGATAGCA-AGTCTTGTCTTCCTGTATTGGCAGCGAAGTAGA-C
1 GAAGATAGTAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * *
46316017 TGAAGATAGTAGATCTTGTCTTCGTGTATTTGCAGCGAAGTAGGTC
1 -GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * *
46316063 GAAGATAGCATATCTTGTCTTCTTGTATTGGCAGCGAAGTGGATC
1 GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * *
46316108 GAATATAGTAGATCTTGTCTCCCTG-A---GCAGCAGTAGAGTAGGTC
1 GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGC-G-A-AGTAGATC
* * *
46316152 GAAGATTGTAGATCTTTTCTTCCTGTATTGGCAGCGAGGTAGATC
1 GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* *
46316197 GAAGATAGCA-AGTCTTATCTTCCTGTATTGGCAGCGAAGTAGA-C
1 GAAGATAGTAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
46316241 TGAAGATAGCT-GATCTT
1 -GAAGATAG-TAGATCTT
46316258 ATCTCTCTGA
Statistics
Matches: 270, Mismatches: 43, Indels: 33
0.78 0.12 0.10
Matches are distributed among these distances:
41 5 0.02
42 1 0.00
43 1 0.00
44 46 0.17
45 206 0.76
46 5 0.02
47 1 0.00
48 5 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (45 bp):
GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
Found at i:46316256 original size:134 final size:134
Alignment explanation
Indices: 46315940--46316267 Score: 348
Period size: 134 Copynumber: 2.4 Consensus size: 134
46315930 AGATTGTAGC
* * * * * *
46315940 TCTTGTCTTCCTGTATTGGTAGTGAAGTAGATCGAAGATAGCA-AGTCTTGTCTTCCTGTATTGG
1 TCTTATCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGA-TCTTATCTCCCTG-A---G
* * * *
46316004 CAGC-G-A-AGTA-GACTGAAGATAGTAGATCTTGTCTTCGTGTATTTGCAGCGAAGTAGGTCGA
61 CAGCAGTAGAGTAGGTC-GAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGA
46316065 AGATAGCATA
125 AGATAGCATA
* * * * *
46316075 TCTTGTCTTCTTGTATTGGCAGCGAAGTGGATCGAATATAGTAGATCTTGTCTCCCTGAGCAGCA
1 TCTTATCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTATCTCCCTGAGCAGCA
* * *
46316140 GTAGAGTAGGTCGAAGATTGTAGATCTTTTCTTCCTGTATTGGCAGCGAGGTAGATCGAAGATAG
66 GTAGAGTAGGTCGAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
46316205 CA-A
131 CATA
*
46316208 GTCTTATCTTCCTGTATTGGCAGCGAAGTAGA-CTGAAGATAGCT-GATCTTATCTCTCTGA
1 -TCTTATCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAG-TAGATCTTATCTCCCTGA
46316268 AGTTACAGTA
Statistics
Matches: 165, Mismatches: 20, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
131 5 0.03
132 1 0.01
133 3 0.02
134 103 0.62
135 52 0.32
136 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (134 bp):
TCTTATCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTATCTCCCTGAGCAGCA
GTAGAGTAGGTCGAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAG
CATA
Found at i:46316343 original size:85 final size:84
Alignment explanation
Indices: 46316252--46316887 Score: 410
Period size: 85 Copynumber: 7.4 Consensus size: 84
46316242 GAAGATAGCT
* * *
46316252 GATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCAACCAGTCTTATCTCCCTGAAGTTGCAG
*
46316317 TGGAGCAGATTAAAAATATA
66 TGGAGCAGA-TAAAAATACA
* * ** * *
46316337 GATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATTGCATTCAGTCTTATCTCTCTAAAGTTGCAG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCAACCAGTCTTATCTCCCTGAAGTTGCAG
* *
46316402 TGAAGTAGATAGAAGAA-ACCA
66 TGGAGCAGATA-AA-AATA-CA
* * * * *** * ** *
46316423 -ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACATAGATCTTATCTATCTAAAGTTG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCGCAAC-CAG-TCTTATCTCCCTGAAGTTG
* * * *
46316487 CAGTAGAGCAGAT-CACATCCA
63 CAGTGGAGCAGATAAAAATACA
* * * * * * *
46316508 G-TCTTATCTCCCTAAATTTGCAGTAGAGCAGATAGAAGAAACCAATCCTATCT-CCTGAAGTTG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT---CGCAACCAGTCTTATCTCCCTGAAGTTG
* *
46316571 CAGTGGAGCGGATTAAAAACACA
63 CAGTGGAGCAGA-TAAAAATACA
* * * * *
46316594 GATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCCAGTCTTATTTCACTGAAGTTGCAA
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCAACCAGTCTTATCTCCCTGAAGTTGCAG
* *
46316659 TGGAGCAGAAAGAAAAAACTA
66 TGGAGCAGATA-AAAATAC-A
* * * * *** * *
46316680 -ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTCTCTGAAGTTG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCGCAAC-C-AGTCTTATCTCCCTGAAGTTG
* ***
46316744 CAGTAGAGCAGAT-CGCAT-CTA
63 CAGTGGAGCAGATAAAAATAC-A
* * * * * * * * *
46316765 G-TCTTATCTCACTGAAGTTGTAGTGGAGCAGA-CGGAAGAAACCAATCCTATCTTCTTGAATTT
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC----GCAACCAGTCTTATCTCCCTGAAGTT
*
46316828 GCAGTGGAGCAGATTAAAAACACA
62 GCAGTGGAGCAGA-TAAAAATACA
46316852 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCG
1 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCG
46316888 TATCAGACTT
Statistics
Matches: 423, Mismatches: 98, Indels: 60
0.73 0.17 0.10
Matches are distributed among these distances:
84 33 0.08
85 242 0.57
86 19 0.04
87 43 0.10
88 85 0.20
89 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (84 bp):
GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCAACCAGTCTTATCTCCCTGAAGTTGCAG
TGGAGCAGATAAAAATACA
Found at i:46316443 original size:129 final size:129
Alignment explanation
Indices: 46316298--46316887 Score: 860
Period size: 129 Copynumber: 4.6 Consensus size: 129
46316288 CATCTAGTCT
* * *
46316298 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAATATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * *
46316363 GAGTAGATTGCATTCAGTCTTATCTCTCTAAAGTTGCAGTGAAGTAGATAGAAGAAACCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGAAGCAGATAGAAGAAACCAATCC
* * *
46316427 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACATAGATCTTATCTATCTAAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *
46316492 GAGCAGATCACATCCAGTCTTATCTCCCTAAATTTGCAGT-AGAGCAGATAGAAGAAACCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGA-AGCAGATAGAAGAAACCAATCC
*
46316556 TATCT-CCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * * * *
46316620 GAGCAGATCGCATCCAGTCTTATTTCACTGAAGTTGCAATGGAGCAGAAAGAAAAAACTAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGAAGCAGATAGAAGAAACCAATCC
*
46316684 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * **
46316749 GAGCAGATCGCATCTAGTCTTATCTCACTGAAGTTGTAGTGGAGCAGACGGAAGAAACCAATCC
66 GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGAAGCAGATAGAAGAAACCAATCC
* * * *
46316813 TATCTTCTTGAATTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
46316878 GAGCAGATCG
66 GAGCAGATCG
46316888 TATCAGACTT
Statistics
Matches: 418, Mismatches: 40, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
128 114 0.27
129 304 0.73
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (129 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAGTGAAGCAGATAGAAGAAACCAATCC
Found at i:46316770 original size:257 final size:257
Alignment explanation
Indices: 46316298--46316887 Score: 883
Period size: 257 Copynumber: 2.3 Consensus size: 257
46316288 CATCTAGTCT
* *
46316298 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAATATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * * * * *
46316363 GAGTAGATTGCATTCAGTCTTATCTCTCTAAAGTTGCAGTGAAGTAGATAGAAGAAACCAATCCT
65 GAGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAATGAAGCAGAAAGAAAAAACCAATCCT
* *
46316428 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACATAGATCTTATCTATCTAAAGTTGCAGTAG
130 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTATCTAAAGTTGCAGTAG
* * *
46316493 AGCAGATCACATCCAGTCTTATCTCCCTAAATTTGCAGTAGAGCAGATAGAAGAAACCAATCC
195 AGCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
* *
46316556 TATCTCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTACAGTAG
1 TATCTCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
* * * *
46316621 AGCAGATCGCATCCAGTCTTATTTCACTGAAGTTGCAATGGAGCAGAAAGAAAAAACTAATCCTA
66 AGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAATGAAGCAGAAAGAAAAAACCAATCCTA
* *
46316686 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTCTCTGAAGTTGCAGTAGA
131 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTATCTAAAGTTGCAGTAGA
* * * * * *
46316751 GCAGATCGCATCTAGTCTTATCTCACTGAAGTTGTAGTGGAGCAGACGGAAGAAACCAATCC
196 GCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
* *
46316813 TATCTTCTTGAATTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATC-TCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
46316878 GAGCAGATCG
65 GAGCAGATCG
46316888 TATCAGACTT
Statistics
Matches: 298, Mismatches: 33, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
257 227 0.76
258 71 0.24
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (257 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
AGCAGATCGCATCCAGTCTTATCTCACTAAAGTTGCAATGAAGCAGAAAGAAAAAACCAATCCTA
TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTATCTAAAGTTGCAGTAGA
GCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
Found at i:46316939 original size:257 final size:255
Alignment explanation
Indices: 46316298--46317006 Score: 872
Period size: 257 Copynumber: 2.8 Consensus size: 255
46316288 CATCTAGTCT
* *
46316298 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAATATAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCT-CCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * * * *
46316363 GAGTAGATTGCATTCAGTCTTATCTCTCTAAAGTTGCAGTGAAGT-AGATAGAAGAAACCAATCC
65 GAGCAGATCGCA-TCAGTCTTATTTCT-TAAAGTTGCAATG-AGTCAGATAGAAGAAACTAATCC
* * * *
46316427 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACATAGATCTTATCTATCTAAAGTTGCAGTA
127 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTCTCTGAAGTTGCAGTA
* * *
46316492 GAGCAGATCACATCCAGTCTTATCTCCCTAAATTTGCAGTAGAGCAGATAGAAGAAACCAATCC
192 GAGCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
* *
46316556 TATCTCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTACAGTAG
1 TATCTCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
* * * *
46316621 AGCAGATCGCATCCAGTCTTATTTCACTGAAGTTGCAATGGAG-CAGAAAGAAAAAACTAATCCT
66 AGCAGATCGCAT-CAGTCTTATTTC-TTAAAGTTGCAAT-GAGTCAGATAGAAGAAACTAATCCT
46316685 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTCTCTGAAGTTGCAGTAG
128 ATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTCTCTGAAGTTGCAGTAG
* * * * * *
46316750 AGCAGATCGCATCTAGTCTTATCTCACTGAAGTTGTAGTGGAGCAGACGGAAGAAACCAATCC
193 AGCAGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
* *
46316813 TATCTTCTTGAATTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATC-TCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
* * *** * **
46316878 GAGCAGATCGTATCAGACTTTATTTTCTTAAAGACACAAT-AGTCAAGTTA-AAGCTACTAATCC
65 GAGCAGATCGCATCAGTC-TTA-TTTCTTAAAGTTGCAATGAGTC-AGATAGAAGAAACTAATCC
* * * * ** *
46316941 TATCTCCTTAAAGTTGCAGTGTAGCAGATT-AAAACGAGGAATCATATAC-CTCTGAAGTTGCAG
127 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAAC-ACAAATCTTAT-CTCTCTGAAGTTGCAG
46317004 TAG
190 TAG
46317007 GTTAAATTAG
Statistics
Matches: 391, Mismatches: 49, Indels: 23
0.84 0.11 0.05
Matches are distributed among these distances:
256 8 0.02
257 290 0.74
258 89 0.23
259 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (255 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAG
AGCAGATCGCATCAGTCTTATTTCTTAAAGTTGCAATGAGTCAGATAGAAGAAACTAATCCTATC
TCCCTGAAGTTGCAGTGGAGCGGATTAAAAACACAAATCTTATCTCTCTGAAGTTGCAGTAGAGC
AGATCACATCCAGTCTTATCTCACTAAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCC
Found at i:46317001 original size:44 final size:44
Alignment explanation
Indices: 46316951--46317099 Score: 129
Period size: 44 Copynumber: 3.2 Consensus size: 44
46316941 TATCTCCTTA
46316951 AAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTG
1 AAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTG
** ** * *** * *
46316995 AAGTTGCAGTAGGTTAAATTAGATCTTATCATGTCAAACCTTAT-CTCTCTG
1 AAGTTGCAGT--G-T--AGCAGA--TTAAAACGAGGAATCATATAC-CTCTG
46317046 AAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTG
1 AAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTG
46317090 AAGTTGCAGT
1 AAGTTGCAGT
46317100 AGGTTAAATT
Statistics
Matches: 76, Mismatches: 20, Indels: 18
0.67 0.18 0.16
Matches are distributed among these distances:
44 36 0.47
45 1 0.01
46 5 0.07
47 1 0.01
48 1 0.01
49 5 0.07
50 1 0.01
51 26 0.34
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (44 bp):
AAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTG
Found at i:46317104 original size:95 final size:95
Alignment explanation
Indices: 46316941--46317163 Score: 392
Period size: 95 Copynumber: 2.3 Consensus size: 95
46316931 CTACTAATCC
* *
46316941 TATCTCCTTAAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
*
46317006 GGTTAAATTAGATCTTATCATGTCAAACCT
66 GGTTAAATTAGATCTTATCATGCCAAACCT
*
46317036 TATCTCTCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
46317101 GGTTAAATTAGATCTTATCATGCCAAACCT
66 GGTTAAATTAGATCTTATCATGCCAAACCT
* *
46317131 TATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAA
1 TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAA
46317164 GATACAAGTC
Statistics
Matches: 121, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 121 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (95 bp):
TATCTCCCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
GGTTAAATTAGATCTTATCATGCCAAACCT
Found at i:46317186 original size:95 final size:95
Alignment explanation
Indices: 46316941--46317194 Score: 334
Period size: 95 Copynumber: 2.7 Consensus size: 95
46316931 CTACTAATCC
* * * ** *
46316941 TATCTCCTTAAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGAACAATCATATACCCCTGAAGTTGCAGTA
*
46317006 GGTTAAATTAGATCTTATCATGTCAAACCT
66 GGTTAAATTAGATCTTATCATGCCAAACCT
* * ** *
46317036 TATCTCTCTGAAGTTGCAGTGTAGCAGATTAAAACGAGGAATCATATACCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGAACAATCATATACCCCTGAAGTTGCAGTA
46317101 GGTTAAATTAGATCTTATCATGCCAAACCT
66 GGTTAAATTAGATCTTATCATGCCAAACCT
* *
46317131 TATCTCCCTGAAGTTGCAGTGGAGCAGGTT-AAA-GATACAAGTCTTAT-CTCCCTGAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGA-ACAA-TCATATAC-CCCTGAAGTTGCA
46317193 GT
63 GT
46317195 GGAGCAGACT
Statistics
Matches: 145, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
93 2 0.01
94 6 0.04
95 137 0.94
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (95 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGAACAATCATATACCCCTGAAGTTGCAGTA
GGTTAAATTAGATCTTATCATGCCAAACCT
Found at i:46317237 original size:44 final size:44
Alignment explanation
Indices: 46317132--46317222 Score: 130
Period size: 44 Copynumber: 2.1 Consensus size: 44
46317122 GCCAAACCTT
** * *
46317132 ATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGATACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATACAAATCTC
46317176 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA-ATCACAAATCTC
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGAT-ACAAATCTC
46317220 ATC
1 ATC
46317223 CCCATAGAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 2 0.05
44 40 0.95
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATACAAATCTC
Found at i:46318923 original size:9 final size:9
Alignment explanation
Indices: 46318906--46318945 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
46318896 TACTATGTAA
*
46318906 TTTAAATTG
1 TTTATATTG
46318915 TTTATATTG
1 TTTATATTG
*
46318924 TTTAT-TTC
1 TTTATATTG
46318932 TTTATATTG
1 TTTATATTG
46318941 TTTAT
1 TTTAT
46318946 TTCAAGACTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.68
Consensus pattern (9 bp):
TTTATATTG
Found at i:46318937 original size:17 final size:17
Alignment explanation
Indices: 46318915--46318948 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
46318905 ATTTAAATTG
46318915 TTTATATTGTTTATTTC
1 TTTATATTGTTTATTTC
46318932 TTTATATTGTTTATTTC
1 TTTATATTGTTTATTTC
46318949 AAGACTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTATATTGTTTATTTC
Found at i:46322447 original size:13 final size:13
Alignment explanation
Indices: 46322429--46322454 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46322419 CTGTAATTCT
46322429 GATATGGAATGGA
1 GATATGGAATGGA
46322442 GATATGGAATGGA
1 GATATGGAATGGA
46322455 ATGGAGAGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (13 bp):
GATATGGAATGGA
Found at i:46333597 original size:15 final size:14
Alignment explanation
Indices: 46333573--46333606 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
46333563 GGGATCATTC
46333573 TAAAAAAAATAAAA
1 TAAAAAAAATAAAA
46333587 TAAATAAAAATAAAA
1 TAAA-AAAAATAAAA
46333602 TAAAA
1 TAAAA
46333607 TTCTGCATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (14 bp):
TAAAAAAAATAAAA
Found at i:46334078 original size:44 final size:44
Alignment explanation
Indices: 46334010--46334245 Score: 217
Period size: 44 Copynumber: 5.1 Consensus size: 44
46334000 TAGATCACAT
*
46334010 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
* *
46334054 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
** ** *
46334098 TGGATT-AAAATA-AAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG
1 CAGATTGAAGCTAGAA--ATCTTATCTCCCTGAGA-TTACAGT---G--GA--G
*
46334149 CATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAG
1 ---CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
* * *
46334196 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACATTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
*
46334240 CGGATT
1 CAGATT
46334246 AAAACAAAGG
Statistics
Matches: 155, Mismatches: 21, Indels: 32
0.75 0.10 0.15
Matches are distributed among these distances:
42 1 0.01
43 5 0.03
44 110 0.71
47 2 0.01
49 4 0.03
51 2 0.01
54 25 0.16
55 4 0.03
56 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGTGGAG
Found at i:46334140 original size:142 final size:142
Alignment explanation
Indices: 46333884--46334306 Score: 684
Period size: 142 Copynumber: 3.0 Consensus size: 142
46333874 AAGATAGCAG
* * * ** * **
46333884 ATCTTATCTCACTGAGAATACAGCAGAGCAGATCAAAGCTAGTAATTCTATCTCTTTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
46333949 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
46334014 TTGAAGCTAGAA
131 TTGAAGCTAGAA
46334026 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* *
46334091 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
*
46334156 TTGAAGCCAGAA
131 TTGAAGCTAGAA
*
46334168 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* * * * *
46334233 ATTGGAGCGGATTAAAACAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCATATTAGA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
*
46334298 ATGAAGCTA
131 TTGAAGCTA
46334307 CAACAGCAAA
Statistics
Matches: 260, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
142 260 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (142 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCACATCAGA
TTGAAGCTAGAA
Found at i:46334264 original size:44 final size:44
Alignment explanation
Indices: 46334167--46334278 Score: 120
Period size: 44 Copynumber: 2.5 Consensus size: 44
46334157 TGAAGCCAGA
* * *
46334167 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAACAAGT
* * *
46334211 AATCCTATCTCCCTGAGATTACATTGGAGCGGATTAAAACAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAAC-AAGT
* *
46334255 GATCTTATCTCTCTGA-AGTTACAG
1 AATCTTATCTCCCTGAGA-TTACAG
46334279 CAGAGTAGAT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
43 1 0.02
44 53 0.95
45 2 0.04
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAACAAGT
Found at i:46339548 original size:59 final size:54
Alignment explanation
Indices: 46339470--46339624 Score: 168
Period size: 58 Copynumber: 2.7 Consensus size: 54
46339460 ATATGTTATG
* *
46339470 ATTTTTATTAATTCATATTTTAATAATTATTATATTAAGAATATTATTAAATTATAT
1 ATTTTTATTAATT-ATA-TTTAATAATAATTATATTAA-AATATGATTAAATTATAT
* * * *
46339527 ATTATTTTATTAAATTGTATTTAATTAATAATTATGTTTAAATATGATTAAATTATTT
1 A-T-TTTTATT-AATTATATTTAA-TAATAATTATATTAAAATATGATTAAATTATAT
46339585 ATTTTTATTCAATTATATTTAATAATAATCT-TATTAAAAT
1 ATTTTTATT-AATTATATTTAATAATAAT-TATATTAAAAT
46339625 TTAATAACAA
Statistics
Matches: 83, Mismatches: 10, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
55 14 0.17
56 19 0.23
57 2 0.02
58 23 0.28
59 21 0.25
60 4 0.05
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (54 bp):
ATTTTTATTAATTATATTTAATAATAATTATATTAAAATATGATTAAATTATAT
Found at i:46341239 original size:5 final size:5
Alignment explanation
Indices: 46341229--46341255 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
46341219 ATCCGCGCGT
46341229 CGACC CGACC CGACC CGACC CGACC CG
1 CGACC CGACC CGACC CGACC CGACC CG
46341256 GAGGATCCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.59, G:0.22, T:0.00
Consensus pattern (5 bp):
CGACC
Found at i:46341698 original size:22 final size:21
Alignment explanation
Indices: 46341657--46341702 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
46341647 TACGTGCATA
* *
46341657 TATTTTTATGATATACATACAT
1 TATTTTTATAACATACATAC-T
*
46341679 TATTTTTATAACATATATACT
1 TATTTTTATAACATACATACT
46341700 TAT
1 TAT
46341703 ATATTTTTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.52
Consensus pattern (21 bp):
TATTTTTATAACATACATACT
Found at i:46346102 original size:11 final size:12
Alignment explanation
Indices: 46346086--46346114 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46346076 CCCCTAATTA
46346086 AAAGTG-TTGAG
1 AAAGTGATTGAG
46346097 AAAGTGATTGAG
1 AAAGTGATTGAG
46346109 AAAGTG
1 AAAGTG
46346115 GTGTTCAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.41, C:0.00, G:0.34, T:0.24
Consensus pattern (12 bp):
AAAGTGATTGAG
Found at i:46356944 original size:44 final size:44
Alignment explanation
Indices: 46356896--46356985 Score: 162
Period size: 44 Copynumber: 2.0 Consensus size: 44
46356886 ACTGACCGAG
46356896 TTCATTGCCATCATTTGCGATCGACAGTAACAACACAGGGAGTT
1 TTCATTGCCATCATTTGCGATCGACAGTAACAACACAGGGAGTT
* *
46356940 TTCATTGCCATCATTTGCGATCGATAGTAACAACACGGGGAGTT
1 TTCATTGCCATCATTTGCGATCGACAGTAACAACACAGGGAGTT
46356984 TT
1 TT
46356986 TCTAAACTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
TTCATTGCCATCATTTGCGATCGACAGTAACAACACAGGGAGTT
Found at i:46357844 original size:10 final size:10
Alignment explanation
Indices: 46357825--46357859 Score: 52
Period size: 10 Copynumber: 3.3 Consensus size: 10
46357815 GTATATTCCT
46357825 AAAGTAAAAAA
1 AAAG-AAAAAA
46357836 AAGAGAAAAAA
1 AA-AGAAAAAA
46357847 AAAGAAAAAA
1 AAAGAAAAAA
46357857 AAA
1 AAA
46357860 TTAATTTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 11 0.48
11 10 0.43
12 2 0.09
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:46357847 original size:12 final size:11
Alignment explanation
Indices: 46357830--46357859 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
46357820 TTCCTAAAGT
46357830 AAAAAAAAGAGA
1 AAAAAAAAGA-A
46357842 AAAAAAAAGAA
1 AAAAAAAAGAA
46357853 AAAAAAA
1 AAAAAAA
46357860 TTAATTTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.44
12 10 0.56
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:46365020 original size:29 final size:29
Alignment explanation
Indices: 46364975--46365113 Score: 118
Period size: 29 Copynumber: 4.7 Consensus size: 29
46364965 TCCGATTCTA
46364975 TTATATGTGAAGCCTTTGTGGCGAAATATG
1 TTATATG-GAAGCCTTTGTGGCGAAATATG
* * *
46365005 TTAT-TTGAGAGCCTTTGTGGTGGAATATG
1 TTATATGGA-AGCCTTTGTGGCGAAATATG
* * * * *
46365034 TTATATGGAAGTCATTGTGGCTAATTCTG
1 TTATATGGAAGCCTTTGTGGCGAAATATG
* * * * *
46365063 TTATGTGTGACGCCTTTGTAGCGGAATATA
1 TTATATG-GAAGCCTTTGTGGCGAAATATG
46365093 TTATATGGGAAGCCTTTGTGG
1 TTATAT-GGAAGCCTTTGTGG
46365114 GTGATTCTAT
Statistics
Matches: 81, Mismatches: 24, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
28 2 0.02
29 42 0.52
30 36 0.44
31 1 0.01
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (29 bp):
TTATATGGAAGCCTTTGTGGCGAAATATG
Found at i:46365040 original size:59 final size:59
Alignment explanation
Indices: 46364973--46365113 Score: 167
Period size: 59 Copynumber: 2.4 Consensus size: 59
46364963 TGTCCGATTC
* * *
46364973 TATTATATGTGAAGCCTTTGTGGCGAAATATGTTATTTGAGA-GCCTTTGTGGTGGAATA
1 TATTATATG-GAAGCCTTTGTGGCGAAATATGTTATGTGAGACGCCTTTGTAGCGGAATA
* * * * * * *
46365032 TGTTATATGGAAGTCATTGTGGCTAATTCTGTTATGTGTGACGCCTTTGTAGCGGAATA
1 TATTATATGGAAGCCTTTGTGGCGAAATATGTTATGTGAGACGCCTTTGTAGCGGAATA
46365091 TATTATATGGGAAGCCTTTGTGG
1 TATTATAT-GGAAGCCTTTGTGG
46365114 GTGATTCTAT
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
58 25 0.37
59 30 0.45
60 12 0.18
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (59 bp):
TATTATATGGAAGCCTTTGTGGCGAAATATGTTATGTGAGACGCCTTTGTAGCGGAATA
Found at i:46365133 original size:60 final size:59
Alignment explanation
Indices: 46364973--46365139 Score: 165
Period size: 60 Copynumber: 2.8 Consensus size: 59
46364963 TGTCCGATTC
* * * * * * * * *
46364973 TATTATATGTGAAGCCTTTGTGGCGAAATATGTTATTTGAGA-GCCTTTGTGGTGGAATA
1 TATTATATG-GAAGCCATTGTGGCTAATTCTATTATATGTGACGCCTTTGTAGCGGAATA
* * * *
46365032 TGTTATATGGAAGTCATTGTGGCTAATTCTGTTATGTGTGACGCCTTTGTAGCGGAATA
1 TATTATATGGAAGCCATTGTGGCTAATTCTATTATATGTGACGCCTTTGTAGCGGAATA
* * *
46365091 TATTATATGGGAAGCCTTTGTGGGTGATTCTATTATATGTGACGCCTTT
1 TATTATAT-GGAAGCCATTGTGGCTAATTCTATTATATGTGACGCCTTT
46365140 TTGGCTATCT
Statistics
Matches: 89, Mismatches: 17, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
58 25 0.28
59 30 0.34
60 34 0.38
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.40
Consensus pattern (59 bp):
TATTATATGGAAGCCATTGTGGCTAATTCTATTATATGTGACGCCTTTGTAGCGGAATA
Found at i:46365217 original size:53 final size:52
Alignment explanation
Indices: 46365120--46365229 Score: 125
Period size: 53 Copynumber: 2.1 Consensus size: 52
46365110 GTGGGTGATT
* * * *
46365120 CTAT-TATATGTGACGCCTTTTTGGCTATCTATACTAATAAATGCCTTTATGG
1 CTATCTATATGGGACACCTTTGTGGCTATCTATACTAATAAATGCC-TTATGA
* **
46365172 CTATCTATATGGGACACCTTTGTGGCTATCTAT-TTGAATGGATGCCTTATGA
1 CTATCTATATGGGACACCTTTGTGGCTATCTATACT-AATAAATGCCTTATGA
46365224 CTATCT
1 CTATCT
46365230 TTGTTATTGA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
52 16 0.33
53 33 0.67
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (52 bp):
CTATCTATATGGGACACCTTTGTGGCTATCTATACTAATAAATGCCTTATGA
Found at i:46368110 original size:24 final size:24
Alignment explanation
Indices: 46368065--46368111 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
46368055 GTTTAACCGG
* *
46368065 ATTAACCAAATTTATATTAATTGA
1 ATTAACCAAAATTATATAAATTGA
46368089 ATTAACCAAAATTA-ACTAAATTG
1 ATTAACCAAAATTATA-TAAATTG
46368112 GTAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.36
Consensus pattern (24 bp):
ATTAACCAAAATTATATAAATTGA
Found at i:46375870 original size:14 final size:13
Alignment explanation
Indices: 46375851--46375885 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
46375841 AAGATGCAAG
46375851 AAAATAAAGAATAT
1 AAAATAAA-AATAT
46375865 AAAATAGAAAATAT
1 AAAATA-AAAATAT
46375879 AAAATAA
1 AAAATAA
46375886 TAAAAGGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 1 0.05
14 17 0.85
15 2 0.10
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (13 bp):
AAAATAAAAATAT
Found at i:46386933 original size:20 final size:20
Alignment explanation
Indices: 46386896--46386933 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46386886 ATTCAGGTCC
*
46386896 AATCAGCTCATTTGAGCTTA
1 AATCAGCTCATTTAAGCTTA
*
46386916 AATCAGCTCGTTTAAGCT
1 AATCAGCTCATTTAAGCT
46386934 CAATTTAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (20 bp):
AATCAGCTCATTTAAGCTTA
Found at i:46395709 original size:152 final size:152
Alignment explanation
Indices: 46395433--46395737 Score: 432
Period size: 152 Copynumber: 2.0 Consensus size: 152
46395423 TTAGAATTGT
* * * *
46395433 TGAGTATTCGTAACCATCGTTAATATCAAGTCCCTTGCCTATTGGAGGGTTATGTTGACCAATGC
1 TGAGTATTCGTAACCATCATCAATATCAACTCCCTTGCCTATTGGAGGGTCATGTTGACCAATGC
* * * * *
46395498 CCTCTATTGGCGGCATCTACCATACTCATTTCTTTAGGCTTCAAGTCCTCATAGAAGTATTGGAG
66 CCTCTACTGGCAGCATCTACCATACTCATTTCTATAGGCTTCAAGCCCTCATAAAAGTATTGGAG
*
46395563 AAGAGACTCTTCTGTTATCCCA
131 AAGAGACTCTTCTATTATCCCA
* * * *
46395585 TGAGTATTCGTAACCATTATCGATATCAACTCTCTTTCCTATTGGAGGGTCATGTTGACCAATGC
1 TGAGTATTCGTAACCATCATCAATATCAACTCCCTTGCCTATTGGAGGGTCATGTTGACCAATGC
* * * *
46395650 CCTCTACTGGCAGCATCTACCATACTCATTT-TAATGGGTTTTAAGCCCTGATAAAAGTATTGGA
66 CCTCTACTGGCAGCATCTACCATACTCATTTCT-ATAGGCTTCAAGCCCTCATAAAAGTATTGGA
46395714 GAAGAGACTCTTCTATTATCCCA
130 GAAGAGACTCTTCTATTATCCCA
46395737 T
1 T
46395738 TTTGTGGGTA
Statistics
Matches: 134, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
151 1 0.01
152 133 0.99
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (152 bp):
TGAGTATTCGTAACCATCATCAATATCAACTCCCTTGCCTATTGGAGGGTCATGTTGACCAATGC
CCTCTACTGGCAGCATCTACCATACTCATTTCTATAGGCTTCAAGCCCTCATAAAAGTATTGGAG
AAGAGACTCTTCTATTATCCCA
Found at i:46399090 original size:23 final size:21
Alignment explanation
Indices: 46399055--46399097 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
46399045 AAATGTTTTA
46399055 AATTTAATCTAAACCATTTATAT
1 AATTTAATCTAAA--ATTTATAT
* *
46399078 AATTTGATTTAAAATTTATA
1 AATTTAATCTAAAATTTATA
46399098 AAATCCTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
23 11 0.61
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (21 bp):
AATTTAATCTAAAATTTATAT
Found at i:46402553 original size:18 final size:20
Alignment explanation
Indices: 46402529--46402576 Score: 73
Period size: 18 Copynumber: 2.5 Consensus size: 20
46402519 TAATGTTATG
46402529 TACAAAAAAATTAAAT-AAA
1 TACAAAAAAATTAAATGAAA
46402548 -ACAAAAAAATTAAATGAAA
1 TACAAAAAAATTAAATGAAA
46402567 TTACAAAAAA
1 -TACAAAAAA
46402577 CAAATAGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 15 0.58
19 3 0.12
21 8 0.31
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (20 bp):
TACAAAAAAATTAAATGAAA
Found at i:46407360 original size:5 final size:5
Alignment explanation
Indices: 46407350--46407374 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
46407340 TTTGGAATAT
46407350 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
46407375 AAGGCTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:46408363 original size:21 final size:21
Alignment explanation
Indices: 46408337--46408376 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46408327 TTCGGGTGGA
* *
46408337 TCAGCTCTTTTGAGCTTCTTT
1 TCAGCTATTATGAGCTTCTTT
46408358 TCAGCTATTATGAGCTTCT
1 TCAGCTATTATGAGCTTCT
46408377 GTTGGCGTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.47
Consensus pattern (21 bp):
TCAGCTATTATGAGCTTCTTT
Found at i:46410264 original size:105 final size:105
Alignment explanation
Indices: 46410082--46410290 Score: 400
Period size: 105 Copynumber: 2.0 Consensus size: 105
46410072 ATGAATTTGA
46410082 CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCCATCTCAACATAACATAT
1 CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCCATCTCAACATAACATAT
46410147 TTTACATGTAACTCACCATTTCAAAGTCTCTCATACATAT
66 TTTACATGTAACTCACCATTTCAAAGTCTCTCATACATAT
*
46410187 CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCTATCTCAACATAACATAT
1 CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCCATCTCAACATAACATAT
*
46410252 TTTACGTGTAACTCACCATTTCAAAGTCTCTCATACATA
66 TTTACATGTAACTCACCATTTCAAAGTCTCTCATACATA
46410291 CATATCTTGG
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 102 1.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (105 bp):
CATGGATAACCATTATACTTGAGCATGATTCAATTGGATTTATCATCCATCTCAACATAACATAT
TTTACATGTAACTCACCATTTCAAAGTCTCTCATACATAT
Found at i:46420577 original size:62 final size:62
Alignment explanation
Indices: 46420501--46420690 Score: 337
Period size: 62 Copynumber: 3.0 Consensus size: 62
46420491 CTTCTGATCA
46420501 GTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGAACAAGTGATAAGTG
1 GTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGAACAAGTGATAAGTG
46420563 GTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGAACAAGTGATAAGTG
1 GTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGAACAAGTGATAAGTG
*
46420625 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAAGTGATA-AAGTGATAAGTG
1 GTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA--GA-ACAAGTGATAAGTG
46420689 GT
1 GT
46420691 AGCATTAGCT
Statistics
Matches: 124, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
62 107 0.86
64 16 0.13
65 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (62 bp):
GTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGAACAAGTGATAAGTG
Found at i:46420690 original size:46 final size:46
Alignment explanation
Indices: 46420625--46420870 Score: 442
Period size: 46 Copynumber: 5.4 Consensus size: 46
46420615 GTGATAAGTG
46420625 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
*
46420671 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTTATCAA
1 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
*
46420717 GTGGTAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
46420763 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
1 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
46420809 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATC-A
1 GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
* *
46420854 GGGA-CAAGTGATAAGTG
1 GTGATAAAGTGATAAGTG
46420871 ATCACAAGTA
Statistics
Matches: 194, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
44 12 0.06
45 4 0.02
46 178 0.92
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (46 bp):
GTGATAAAGTGATAAGTGGTAGCATTAGCTACACTTATCTGATCAA
Found at i:46422202 original size:49 final size:49
Alignment explanation
Indices: 46422129--46422273 Score: 209
Period size: 49 Copynumber: 2.9 Consensus size: 49
46422119 ATGTGAACAT
* *
46422129 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATTGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATAGCATCGATAA
* *
46422179 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGATAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATAGCATCGATAA
* * * *
46422228 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATAGCATCGA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATAGCATCGA
46422274 GAAAACGAAG
Statistics
Matches: 87, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 83 0.95
50 4 0.05
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATAGCATCGATAA
Found at i:46423159 original size:24 final size:24
Alignment explanation
Indices: 46423128--46423264 Score: 108
Period size: 22 Copynumber: 6.0 Consensus size: 24
46423118 ACTAAAAATT
*
46423128 TTTG-ATTATAGGGACGAAAAAAA
1 TTTGAATTACAGGGACGAAAAAAA
*
46423151 TTTGAATTACAGGGA-GAAGAAAA
1 TTTGAATTACAGGGACGAAAAAAA
* * *
46423174 TTTGACTTACATGGAGGAAAAAAA
1 TTTGAATTACAGGGACGAAAAAAA
* * *
46423198 --TGAACTACATGGACAAAAAAAA
1 TTTGAATTACAGGGACGAAAAAAA
* * *
46423220 TTAGAATTATAGGGAC--CAAAAA
1 TTTGAATTACAGGGACGAAAAAAA
* *
46423242 TTTAAATTACATGGAC-AAAAAAA
1 TTTGAATTACAGGGACGAAAAAAA
46423265 GATGAAATAC
Statistics
Matches: 90, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
22 35 0.39
23 29 0.32
24 26 0.29
ACGTcount: A:0.51, C:0.08, G:0.18, T:0.23
Consensus pattern (24 bp):
TTTGAATTACAGGGACGAAAAAAA
Found at i:46423234 original size:69 final size:69
Alignment explanation
Indices: 46423139--46423284 Score: 179
Period size: 69 Copynumber: 2.1 Consensus size: 69
46423129 TTGATTATAG
* * * * * ** *
46423139 GGACGAAAAAAATTTGAATTACAGGGAGAAGAAAATTTGACTTACATGGAGGAAAAAA-ATGAAC
1 GGACAAAAAAAATTAGAATTACAGGGACAA-AAAATTTAAATTACATGGACAAAAAAAGATGAAA
46423203 TACAT
65 TACAT
* *
46423208 GGACAAAAAAAATTAGAATTATAGGGACCAAAAATTTAAATTACATGGACAAAAAAAGATGAAAT
1 GGACAAAAAAAATTAGAATTACAGGGACAAAAAATTTAAATTACATGGACAAAAAAAGATGAAAT
46423273 ACAT
66 ACAT
46423277 GGA-AAAAA
1 GGACAAAAA
46423285 TGGACTAACA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
68 28 0.42
69 38 0.58
ACGTcount: A:0.54, C:0.08, G:0.18, T:0.19
Consensus pattern (69 bp):
GGACAAAAAAAATTAGAATTACAGGGACAAAAAATTTAAATTACATGGACAAAAAAAGATGAAAT
ACAT
Found at i:46423275 original size:23 final size:22
Alignment explanation
Indices: 46423181--46423284 Score: 77
Period size: 22 Copynumber: 4.6 Consensus size: 22
46423171 AAATTTGACT
** *
46423181 TACATGGAGGAAAAAAATGAAC
1 TACATGGACAAAAAAAATGAAA
*
46423203 TACATGGACAAAAAAAATTAGAAT
1 TACATGGACAAAAAAAA-T-GAAA
* * * * *
46423227 TATAGGGAC-CAAAAATTTAAA
1 TACATGGACAAAAAAAATGAAA
46423248 TTACATGGACAAAAAAAGATGAAA
1 -TACATGGACAAAAAAA-ATGAAA
46423272 TACATGGA-AAAAA
1 TACATGGACAAAAA
46423285 TGGACTAACA
Statistics
Matches: 63, Mismatches: 14, Indels: 10
0.72 0.16 0.11
Matches are distributed among these distances:
21 2 0.03
22 28 0.44
23 19 0.30
24 14 0.22
ACGTcount: A:0.57, C:0.09, G:0.16, T:0.18
Consensus pattern (22 bp):
TACATGGACAAAAAAAATGAAA
Found at i:46428076 original size:4 final size:4
Alignment explanation
Indices: 46428067--46428093 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
46428057 TTAATTGGAA
46428067 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
46428094 ACTAATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:46429220 original size:11 final size:11
Alignment explanation
Indices: 46429206--46429249 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
46429196 AGATAAATAT
46429206 TATTTTATTAA
1 TATTTTATTAA
*
46429217 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
46429230 TATTTTATTAT
1 TATTTTATTAA
46429241 TATTTTATT
1 TATTTTATT
46429250 TAGTATAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 15 0.54
12 6 0.21
13 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:46431272 original size:33 final size:32
Alignment explanation
Indices: 46431227--46431387 Score: 124
Period size: 33 Copynumber: 4.8 Consensus size: 32
46431217 CAGTGTTTAT
46431227 ATGTAAGACCATAGCTGGGCTATGGCATTTTG
1 ATGTAAGACCATAGCTGGGCTATGGCATTTTG
* * * * * *
46431259 ATGATAAGACCATAACTGAGTTATGACACTATG
1 ATG-TAAGACCATAGCTGGGCTATGGCATTTTG
* * * * * * *
46431292 AACGTAAGACAATGGTTGGACCATGGCAGTGTTTAT
1 -ATGTAAGACCATAGCTGGGCTATGGCA-T-TTT-G
*
46431328 ATGTAAGACCATAGCTGAGCTATGGCATTTTG
1 ATGTAAGACCATAGCTGGGCTATGGCATTTTG
* *
46431360 ATGATAAGACCATAACTGGGTTATGGCA
1 ATG-TAAGACCATAGCTGGGCTATGGCA
46431388 CTACGAATGT
Statistics
Matches: 93, Mismatches: 30, Indels: 11
0.69 0.22 0.08
Matches are distributed among these distances:
32 6 0.06
33 62 0.67
34 3 0.03
35 22 0.24
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.29
Consensus pattern (32 bp):
ATGTAAGACCATAGCTGGGCTATGGCATTTTG
Found at i:46431290 original size:101 final size:101
Alignment explanation
Indices: 46431161--46431399 Score: 415
Period size: 101 Copynumber: 2.4 Consensus size: 101
46431151 GAATTGACGA
*
46431161 ATAAGACCATAACTGAGTTATGGCACTATGAATGTAAGACCATGGTTGAACCATGGCAGTGTTTA
1 ATAAGACCATAACTGAGTTATGGCACTATGAATGTAAGACAATGGTTGAACCATGGCAGTGTTTA
*
46431226 TATGTAAGACCATAGCTGGGCTATGGCATTTTGATG
66 TATGTAAGACCATAGCTGAGCTATGGCATTTTGATG
* * *
46431262 ATAAGACCATAACTGAGTTATGACACTATGAACGTAAGACAATGGTTGGACCATGGCAGTGTTTA
1 ATAAGACCATAACTGAGTTATGGCACTATGAATGTAAGACAATGGTTGAACCATGGCAGTGTTTA
46431327 TATGTAAGACCATAGCTGAGCTATGGCATTTTGATG
66 TATGTAAGACCATAGCTGAGCTATGGCATTTTGATG
* *
46431363 ATAAGACCATAACTGGGTTATGGCACTACGAATGTAA
1 ATAAGACCATAACTGAGTTATGGCACTATGAATGTAA
46431400 ATGATGAATT
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 129 1.00
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (101 bp):
ATAAGACCATAACTGAGTTATGGCACTATGAATGTAAGACAATGGTTGAACCATGGCAGTGTTTA
TATGTAAGACCATAGCTGAGCTATGGCATTTTGATG
Found at i:46431433 original size:24 final size:24
Alignment explanation
Indices: 46431393--46431443 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
46431383 TGGCACTACG
* *
46431393 AATGTAAATGATGAATTGACGGAA
1 AATGTAAAGGATAAATTGACGGAA
*
46431417 AATGTAAAGGATAAATTGACGGTA
1 AATGTAAAGGATAAATTGACGGAA
46431441 AAT
1 AAT
46431444 TACCCAAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.25
Consensus pattern (24 bp):
AATGTAAAGGATAAATTGACGGAA
Found at i:46432565 original size:29 final size:29
Alignment explanation
Indices: 46432512--46432567 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
46432502 ATCTGAGTAA
* *
46432512 AAATGAATATAATGGATAAATAAATAAGT
1 AAATGAATATAATGAATAAACAAATAAGT
46432541 AAATGAATA-AATGAATCAAACAAATAA
1 AAATGAATATAATGAAT-AAACAAATAA
46432568 AATTATAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.62, C:0.04, G:0.11, T:0.23
Consensus pattern (29 bp):
AAATGAATATAATGAATAAACAAATAAGT
Found at i:46432991 original size:5 final size:5
Alignment explanation
Indices: 46432952--46432984 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
46432942 AAAAGAAAGA
46432952 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
46432985 AAGAAAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:46433751 original size:13 final size:12
Alignment explanation
Indices: 46433723--46433768 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
46433713 GAACGATTTG
*
46433723 TAAAAAAAATAAA
1 TAAAAAAGA-AAA
46433736 TAAAAAAGAAACA
1 TAAAAAAGAAA-A
*
46433749 TAAAACAGAAAA
1 TAAAAAAGAAAA
46433761 TAAAAAAG
1 TAAAAAAG
46433769 GAATAGATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.78, C:0.04, G:0.07, T:0.11
Consensus pattern (12 bp):
TAAAAAAGAAAA
Found at i:46434910 original size:17 final size:17
Alignment explanation
Indices: 46434888--46434921 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
46434878 TTGTCAGAGA
46434888 TATATCACACTATCCAT
1 TATATCACACTATCCAT
46434905 TATATCACACTATCCAT
1 TATATCACACTATCCAT
46434922 CGGTTCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (17 bp):
TATATCACACTATCCAT
Found at i:46435074 original size:23 final size:23
Alignment explanation
Indices: 46435030--46435074 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
46435020 CCACTTATTT
*
46435030 TGGCTTGTTTTGAATGTCTAATTA
1 TGGCTTG-TTTGAATGTATAATTA
46435054 TGGCTTG-TTGATATGTATAAT
1 TGGCTTGTTTGA-ATGTATAAT
46435075 GTTGATTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 8 0.42
24 7 0.37
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.49
Consensus pattern (23 bp):
TGGCTTGTTTGAATGTATAATTA
Found at i:46435282 original size:13 final size:13
Alignment explanation
Indices: 46435264--46435297 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
46435254 GCGCACAGGT
*
46435264 GTGTGACTTGGCC
1 GTGTGACCTGGCC
46435277 GTGTGACCTGGCC
1 GTGTGACCTGGCC
46435290 GTGTGACC
1 GTGTGACC
46435298 CAAGTCAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.09, C:0.26, G:0.38, T:0.26
Consensus pattern (13 bp):
GTGTGACCTGGCC
Found at i:46439188 original size:41 final size:41
Alignment explanation
Indices: 46439143--46439242 Score: 148
Period size: 41 Copynumber: 2.4 Consensus size: 41
46439133 TTAGCGCTTG
*
46439143 GCAGGCTTATTGCCGGTGAAACACTTCAGACTAAATGTCTA
1 GCAGGCTTAATGCCGGTGAAACACTTCAGACTAAATGTCTA
* * *
46439184 GCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTCTA
1 GCAGGCTTAATGCCGGTGAAACACTTCAGACTAAATGTCTA
46439225 GCAGGC-TAAGTGCCGGTG
1 GCAGGCTTAA-TGCCGGTG
46439243 TACTGAATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
40 3 0.06
41 51 0.94
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (41 bp):
GCAGGCTTAATGCCGGTGAAACACTTCAGACTAAATGTCTA
Found at i:46447268 original size:22 final size:21
Alignment explanation
Indices: 46447238--46447280 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
46447228 CAAGACACAT
*
46447238 TATTGGTTGGCTTATTTGATGA
1 TATTGGTTGG-ATATTTGATGA
*
46447260 TATTTGTTGGATATTTGATGA
1 TATTGGTTGGATATTTGATGA
46447281 AAGAAGGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.21, C:0.02, G:0.26, T:0.51
Consensus pattern (21 bp):
TATTGGTTGGATATTTGATGA
Found at i:46447653 original size:17 final size:17
Alignment explanation
Indices: 46447633--46447675 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
46447623 GAGTTTGCAA
*
46447633 TTTTGGTGAGCTCGCAG
1 TTTTGATGAGCTCGCAG
* *
46447650 TTTTGATGAGATCGCAC
1 TTTTGATGAGCTCGCAG
46447667 TTTTGATGA
1 TTTTGATGA
46447676 ACTTGCAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.19, C:0.14, G:0.28, T:0.40
Consensus pattern (17 bp):
TTTTGATGAGCTCGCAG
Found at i:46448941 original size:23 final size:21
Alignment explanation
Indices: 46448899--46448953 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
46448889 TATAGACATA
*
46448899 TATATAAAAAATATAAGTATG
1 TATATAAAAAAGATAAGTATG
*
46448920 TATATAAATCAAAGATATGTATG
1 TATATAAA--AAAGATAAGTATG
*
46448943 TAGAATAAAAA
1 TA-TATAAAAA
46448954 TAGTTTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 8 0.29
22 2 0.07
23 13 0.46
24 5 0.18
ACGTcount: A:0.56, C:0.02, G:0.11, T:0.31
Consensus pattern (21 bp):
TATATAAAAAAGATAAGTATG
Found at i:46449305 original size:3 final size:3
Alignment explanation
Indices: 46449251--46449286 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
46449241 AACAATACCT
46449251 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
46449287 GCCTAATTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:46454822 original size:41 final size:41
Alignment explanation
Indices: 46454772--46454865 Score: 134
Period size: 41 Copynumber: 2.3 Consensus size: 41
46454762 AATTCATCAT
* *
46454772 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* * *
46454813 ATTTAGATCACCGGCACTTAGCTTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
46454854 ATTCATATCACC
1 ATTCAGATCACC
46454866 AATTCCAAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:46462376 original size:41 final size:41
Alignment explanation
Indices: 46462326--46462501 Score: 280
Period size: 41 Copynumber: 4.3 Consensus size: 41
46462316 AATTCATCAT
* *
46462326 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
46462367 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
46462408 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
46462449 ATTTAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
46462490 ATTCATATCACC
1 ATTCAGATCACC
46462502 AATTCCAAAC
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 123 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:46462469 original size:82 final size:82
Alignment explanation
Indices: 46462332--46462501 Score: 331
Period size: 82 Copynumber: 2.1 Consensus size: 82
46462322 TCATATTCGG
46462332 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
46462397 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
*
46462414 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
46462479 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
46462496 ATCACC
1 ATCACC
46462502 AATTCCAAAC
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 87 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:46464264 original size:79 final size:79
Alignment explanation
Indices: 46464140--46464287 Score: 224
Period size: 79 Copynumber: 1.9 Consensus size: 79
46464130 ACGCCTCTGC
* * * * *
46464140 GTTACTCTGTTGATGAAGAATATTCGATATCTGAATATGTTAGATTGATTGTTACTGGTTCTGAT
1 GTTACTCTATTGATGAAGAATATACGATATCTAAACATGTTAGATTGATTGTTACTGATTCTGAT
46464205 TTATGATCCTCTAT
66 TTATGATCCTCTAT
* * *
46464219 GTTACTTTATTGATGAGGAATATACGATATCTAAACATGTTAGATTGATTGTTACTGATTCTGGT
1 GTTACTCTATTGATGAAGAATATACGATATCTAAACATGTTAGATTGATTGTTACTGATTCTGAT
46464284 TTAT
66 TTAT
46464288 AACCGTGCAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
79 61 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (79 bp):
GTTACTCTATTGATGAAGAATATACGATATCTAAACATGTTAGATTGATTGTTACTGATTCTGAT
TTATGATCCTCTAT
Found at i:46466029 original size:24 final size:23
Alignment explanation
Indices: 46466002--46466075 Score: 73
Period size: 24 Copynumber: 3.3 Consensus size: 23
46465992 ATTACACATA
*
46466002 AAAAATTGTGATAATTATATATTT
1 AAAAATTATGATAATTATA-ATTT
* *
46466026 AAAAATAATTATAATT-TAA--T
1 AAAAATTATGATAATTATAATTT
*
46466046 AAAAATTATGATAATTACACATTT
1 AAAAATTATGATAATTATA-ATTT
46466070 AAAAAT
1 AAAAAT
46466076 AATTAAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
20 15 0.38
21 1 0.03
22 2 0.05
23 2 0.05
24 20 0.50
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.39
Consensus pattern (23 bp):
AAAAATTATGATAATTATAATTT
Found at i:46466044 original size:17 final size:19
Alignment explanation
Indices: 46466012--46466054 Score: 65
Period size: 17 Copynumber: 2.4 Consensus size: 19
46466002 AAAAATTGTG
46466012 ATAATTATATATTTAA-AA
1 ATAATTATATATTTAATAA
46466030 ATAATTATA-ATTTAATAA
1 ATAATTATATATTTAATAA
46466048 A-AATTAT
1 ATAATTAT
46466055 GATAATTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATAATTATATATTTAATAA
Found at i:46466061 original size:26 final size:27
Alignment explanation
Indices: 46466030--46466080 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
46466020 ATATTTAAAA
*
46466030 ATAATTATA-ATTTAATAAA-AATTATG
1 ATAATTACACATTTAA-AAATAATTATG
46466056 ATAATTACACATTTAAAAATAATTA
1 ATAATTACACATTTAAAAATAATTA
46466081 AAAATTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (27 bp):
ATAATTACACATTTAAAAATAATTATG
Found at i:46467851 original size:54 final size:54
Alignment explanation
Indices: 46467792--46467900 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
46467782 AAGAACGTAG
*
46467792 GGGCCCTTTCGAAGTTCTTGAGCAAGGAGACTAAGAGACTGTGGGCAAAGCGAA
1 GGGCCCTTTAGAAGTTCTTGAGCAAGGAGACTAAGAGACTGTGGGCAAAGCGAA
* *
46467846 GGGCCCTTTAGAATTTCTTGTGCAAGGAGACTAAGAGACTGTGGGCAAAGCGAA
1 GGGCCCTTTAGAAGTTCTTGAGCAAGGAGACTAAGAGACTGTGGGCAAAGCGAA
46467900 G
1 G
46467901 CCAAGTATTG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.29, C:0.17, G:0.33, T:0.20
Consensus pattern (54 bp):
GGGCCCTTTAGAAGTTCTTGAGCAAGGAGACTAAGAGACTGTGGGCAAAGCGAA
Found at i:46470403 original size:22 final size:22
Alignment explanation
Indices: 46470375--46470433 Score: 118
Period size: 22 Copynumber: 2.7 Consensus size: 22
46470365 AAAACAGGTT
46470375 TTTAGCGGCGCTTTTTTATGCC
1 TTTAGCGGCGCTTTTTTATGCC
46470397 TTTAGCGGCGCTTTTTTATGCC
1 TTTAGCGGCGCTTTTTTATGCC
46470419 TTTAGCGGCGCTTTT
1 TTTAGCGGCGCTTTT
46470434 AAGCGCCACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.08, C:0.22, G:0.24, T:0.46
Consensus pattern (22 bp):
TTTAGCGGCGCTTTTTTATGCC
Found at i:46470579 original size:43 final size:43
Alignment explanation
Indices: 46470528--46470810 Score: 236
Period size: 43 Copynumber: 6.6 Consensus size: 43
46470518 TTATGTGAAA
* * * *
46470528 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTGTCAC
1 AAACGCCGCTAAAGATCATAACCTTTAGCGACGCTTTAGTCAC
* * ** *
46470571 AAACGCCGCTAAAGATCTTGACCTTTAGCGGTGTTTTTA-TCAC
1 AAACGCCGCTAAAGATCATAACCTTTAGCGACG-CTTTAGTCAC
* * * * *
46470614 AAACGCCGCTAAAGATCGTAACCTTTAGCGGCACTTTAGCCAT
1 AAACGCCGCTAAAGATCATAACCTTTAGCGACGCTTTAGTCAC
* * * * *
46470657 AAATGCCGCTAAAGATCGTAATCTTTAGTGACACTTTAGAT-AC
1 AAACGCCGCTAAAGATCATAACCTTTAGCGACGCTTTAG-TCAC
* * * * *
46470700 AAATGTCGCTAAAGATCATGAGCTTTAGCGACGCTTTAGCCAC
1 AAACGCCGCTAAAGATCATAACCTTTAGCGACGCTTTAGTCAC
* * *
46470743 AAACGCCACTAAAGA--ATAAACCTTTAGCGATGCTTCTAG-CAA
1 AAACGCCGCTAAAGATCAT-AACCTTTAGCGACGCTT-TAGTCAC
*
46470785 AAACGCCGCTAAA-AACATAACCTTTA
1 AAACGCCGCTAAAGATCATAACCTTTA
46470811 AAAAAATATT
Statistics
Matches: 199, Mismatches: 33, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
41 3 0.02
42 40 0.20
43 153 0.77
44 3 0.02
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATAACCTTTAGCGACGCTTTAGTCAC
Found at i:46470789 original size:42 final size:42
Alignment explanation
Indices: 46470722--46470810 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
46470712 AGATCATGAG
* *
46470722 CTTTAGCGACGCTTTAGCCACAAACGCCACTAAAGA-ATAAAC
1 CTTTAGCGACGCTTTAGCCAAAAACGCCACTAAAAACAT-AAC
* *
46470764 CTTTAGCGATGCTTCTAG-CAAAAACGCCGCTAAAAACATAAC
1 CTTTAGCGACGCTT-TAGCCAAAAACGCCACTAAAAACATAAC
46470806 CTTTA
1 CTTTA
46470811 AAAAAATATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 36 0.88
43 5 0.12
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.22
Consensus pattern (42 bp):
CTTTAGCGACGCTTTAGCCAAAAACGCCACTAAAAACATAAC
Found at i:46475929 original size:20 final size:20
Alignment explanation
Indices: 46475904--46475947 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 20
46475894 TTTTAACTTT
46475904 TAACCCCTAACCTA-AACCCC
1 TAACCCCTAA-CTACAACCCC
46475924 TAACCCCTAACTACTAACCCC
1 TAACCCCTAACTAC-AACCCC
46475945 TAA
1 TAA
46475948 ACCTTATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.14
20 10 0.45
21 9 0.41
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.18
Consensus pattern (20 bp):
TAACCCCTAACTACAACCCC
Found at i:46476064 original size:61 final size:63
Alignment explanation
Indices: 46475937--46476066 Score: 158
Period size: 61 Copynumber: 2.1 Consensus size: 63
46475927 CCCCTAACTA
* * *
46475937 CTAACCCCTAAACCTTATCTAATATATAAATTCAAAAACATTAATTAATCTAAACTCGAATCC
1 CTAACCCCTAAACCTTATCTAATATATAAATTCAAAAACACTAATTAATCTAAACCCGAAACC
* * * * *
46476000 CTAACCCCTAAACCTTATTTCATA-A-AAATT-AAAACACACTAATTAATTTAAACCCTAAAGC
1 CTAACCCCTAAACCTTATCTAATATATAAATTCAAAA-ACACTAATTAATCTAAACCCGAAACC
46476061 CTAACC
1 CTAACC
46476067 TGACATCGAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
60 4 0.07
61 31 0.53
62 1 0.02
63 22 0.38
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.28
Consensus pattern (63 bp):
CTAACCCCTAAACCTTATCTAATATATAAATTCAAAAACACTAATTAATCTAAACCCGAAACC
Found at i:46476172 original size:14 final size:15
Alignment explanation
Indices: 46476153--46476186 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
46476143 CTTAAACTAG
*
46476153 AATCTCTAA-TCCCT
1 AATCTCTAATTCCAT
46476167 AATCTCTAATTCCAT
1 AATCTCTAATTCCAT
46476182 AATCT
1 AATCT
46476187 ATAAATGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.38
Consensus pattern (15 bp):
AATCTCTAATTCCAT
Found at i:46476547 original size:19 final size:20
Alignment explanation
Indices: 46476511--46476548 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
46476501 TTAATTAAAA
*
46476511 TAAATAAACAAATTAAATAG
1 TAAATAAACAAATAAAATAG
*
46476531 TAAAT-AACAGATAAAATA
1 TAAATAAACAAATAAAATA
46476549 TTTTTACGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (20 bp):
TAAATAAACAAATAAAATAG
Found at i:46476665 original size:40 final size:40
Alignment explanation
Indices: 46476621--46476796 Score: 198
Period size: 39 Copynumber: 4.4 Consensus size: 40
46476611 GGGCTTAGGT
* * *
46476621 TTTTTTGCGGCATTTTTCCAAAAAACGCCGCTAATGCTT-A
1 TTTTTAGCGGC-TTTTTCCTAAAAGCGCCGCTAATGCTTGA
**
46476661 TTTTTAGCGGCGCTTTCCTAAAAGCGCCGCTAATGCTT-A
1 TTTTTAGCGGCTTTTTCCTAAAAGCGCCGCTAATGCTTGA
**
46476700 TTTTTAGCGGCGCTTTCCTAAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCTTTTTCCTAAAAGCGCCGCTAATGCTTGA
* * *
46476740 TCTTTAGCGGCGTTTTGT-GT-AGAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGC-TTTT-TCCTAAAAGCGCCGCTAATGCTTGA
46476780 TTTTTAGCGGCATTTTT
1 TTTTTAGCGGC-TTTTT
46476797 TATCCAAACG
Statistics
Matches: 121, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 63 0.52
40 54 0.45
41 3 0.02
42 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (40 bp):
TTTTTAGCGGCTTTTTCCTAAAAGCGCCGCTAATGCTTGA
Found at i:46476678 original size:39 final size:40
Alignment explanation
Indices: 46476635--46476790 Score: 219
Period size: 39 Copynumber: 4.0 Consensus size: 40
46476625 TTGCGGCATT
* *
46476635 TTTCCAAAAAACGCCGCTAATGCTT-ATTTTTAGCGGCGC
1 TTTCCTAAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGC
46476674 TTTCCTAAAAGCGCCGCTAATGCTT-ATTTTTAGCGGCGC
1 TTTCCTAAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGC
*
46476713 TTTCCTAAAAGCGCCGCTAATGCTTGATCTTTAGCGGCG-
1 TTTCCTAAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGC
** * *
46476752 TTTTGTGTAGAGCGCCGCTAATGCTTGATTTTTAGCGGC
1 TTTCCT-AAAAGCGCCGCTAATGCTTGATTTTTAGCGGC
46476791 ATTTTTTATC
Statistics
Matches: 107, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
39 66 0.62
40 41 0.38
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (40 bp):
TTTCCTAAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGC
Found at i:46476766 original size:79 final size:79
Alignment explanation
Indices: 46476635--46476790 Score: 217
Period size: 79 Copynumber: 2.0 Consensus size: 79
46476625 TTGCGGCATT
*
46476635 TTTCCAAAAAACGCCGCTAATGCTTATTTTTAGCGGCGCTTTCCTAAAAGCGCCGCTAATGCTT-
1 TTTCCAAAAAACGCCGCTAATGCTTATCTTTAGCGGCGCTTTCCTAAAAGCGCCGCTAATGCTTG
46476699 ATTTTTAGCGGCGC
66 ATTTTTAGCGGCGC
* * ** * *
46476713 TTTCCTAAAAGCGCCGCTAATGCTTGATCTTTAGCGGCG-TTTTGTGTAGAGCGCCGCTAATGCT
1 TTTCCAAAAAACGCCGCTAATGCTT-ATCTTTAGCGGCGCTTTCCT-AAAAGCGCCGCTAATGCT
46476777 TGATTTTTAGCGGC
64 TGATTTTTAGCGGC
46476791 ATTTTTTATC
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
78 27 0.40
79 29 0.43
80 12 0.18
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (79 bp):
TTTCCAAAAAACGCCGCTAATGCTTATCTTTAGCGGCGCTTTCCTAAAAGCGCCGCTAATGCTTG
ATTTTTAGCGGCGC
Found at i:46483132 original size:29 final size:27
Alignment explanation
Indices: 46483071--46483132 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 27
46483061 AATATATAAA
46483071 TTAATAAAAATATTTCTTTTCATATTAG
1 TTAATAAAAATATTTCTTTT-ATATTAG
*
46483099 -GAATAAACTAATATTTCTTTT-TATTAAG
1 TTAATAAA--AATATTTCTTTTATATT-AG
46483127 TTAATA
1 TTAATA
46483133 TATTTTGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
27 10 0.36
28 2 0.07
29 16 0.57
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.48
Consensus pattern (27 bp):
TTAATAAAAATATTTCTTTTATATTAG
Found at i:46486353 original size:9 final size:9
Alignment explanation
Indices: 46486335--46486384 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
46486325 TTTGGTTAAA
*
46486335 AATTAACCG
1 AATTACCCG
46486344 AATTACCCG
1 AATTACCCG
46486353 AATTACCCG
1 AATTACCCG
* *
46486362 AATTAACCT
1 AATTACCCG
46486371 AATTACCCG
1 AATTACCCG
46486380 AATTA
1 AATTA
46486385 ACCAAATTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.40, C:0.26, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTACCCG
Found at i:46486362 original size:18 final size:18
Alignment explanation
Indices: 46486335--46486392 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
46486325 TTTGGTTAAA
* *
46486335 AATTAACCGAATTACCCG
1 AATTACCCGAATTAACCG
*
46486353 AATTACCCGAATTAACCT
1 AATTACCCGAATTAACCG
*
46486371 AATTACCCGAATTAACCA
1 AATTACCCGAATTAACCG
46486389 AATT
1 AATT
46486393 GAATCACTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (18 bp):
AATTACCCGAATTAACCG
Found at i:46486392 original size:9 final size:9
Alignment explanation
Indices: 46486335--46486392 Score: 71
Period size: 9 Copynumber: 6.4 Consensus size: 9
46486325 TTTGGTTAAA
46486335 AATTAACCG
1 AATTAACCG
*
46486344 AATTACCCG
1 AATTAACCG
*
46486353 AATTACCCG
1 AATTAACCG
*
46486362 AATTAACCT
1 AATTAACCG
*
46486371 AATTACCCG
1 AATTAACCG
*
46486380 AATTAACCA
1 AATTAACCG
46486389 AATT
1 AATT
46486393 GAATCACTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 42 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:46486392 original size:27 final size:27
Alignment explanation
Indices: 46486334--46486392 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
46486324 TTTTGGTTAA
*
46486334 AAATTAACCGAATTACCCGAATTACCC
1 AAATTAACCGAATTACCCGAATTAACC
* *
46486361 GAATTAACCTAATTACCCGAATTAACC
1 AAATTAACCGAATTACCCGAATTAACC
46486388 AAATT
1 AAATT
46486393 GAATCACTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.25
Consensus pattern (27 bp):
AAATTAACCGAATTACCCGAATTAACC
Found at i:46497049 original size:32 final size:32
Alignment explanation
Indices: 46497013--46497074 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
46497003 TAAATGTTTA
*
46497013 TGAAAATATGATATTCTGATCCGAAATATGTC
1 TGAAAATATGACATTCTGATCCGAAATATGTC
* * *
46497045 TGAAAATATGACATTTTGATCTGATATATG
1 TGAAAATATGACATTCTGATCCGAAATATG
46497075 CTTCTGGTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (32 bp):
TGAAAATATGACATTCTGATCCGAAATATGTC
Found at i:46497983 original size:22 final size:22
Alignment explanation
Indices: 46497955--46498008 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
46497945 GAAAATGTGA
*
46497955 ATCTGAGTCTTCGACGCCGGTC
1 ATCTGAGTCTTCGACGCCAGTC
* *
46497977 ATCTGAGTCTTTGACGCTAGTC
1 ATCTGAGTCTTCGACGCCAGTC
*
46497999 ATCCGAGTCT
1 ATCTGAGTCT
46498009 CTGATGCCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.17, C:0.28, G:0.24, T:0.31
Consensus pattern (22 bp):
ATCTGAGTCTTCGACGCCAGTC
Found at i:46498020 original size:22 final size:22
Alignment explanation
Indices: 46497959--46498020 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
46497949 ATGTGAATCT
* *
46497959 GAGTCT-TCGACGCCGGTCATCT
1 GAGTCTCT-GACGCCAGTCATCC
* *
46497981 GAGTCTTTGACGCTAGTCATCC
1 GAGTCTCTGACGCCAGTCATCC
*
46498003 GAGTCTCTGATGCCAGTC
1 GAGTCTCTGACGCCAGTC
46498021 CAAGTAAGCA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.16, C:0.29, G:0.26, T:0.29
Consensus pattern (22 bp):
GAGTCTCTGACGCCAGTCATCC
Found at i:46498909 original size:34 final size:33
Alignment explanation
Indices: 46498878--46498960 Score: 114
Period size: 32 Copynumber: 2.5 Consensus size: 33
46498868 GACATTCTAG
46498878 TCTGATATATGTTTCTGAAATTATGATATTCTGA
1 TCTGATATATGTTTCTGAAA-TATGATATTCTGA
* * * *
46498912 TTTGAAATATG-TTCAGAAATATGATATTTTGA
1 TCTGATATATGTTTCTGAAATATGATATTCTGA
46498944 TCTGATATATGTTTCTG
1 TCTGATATATGTTTCTG
46498961 GTAATACAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
32 21 0.51
33 11 0.27
34 9 0.22
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (33 bp):
TCTGATATATGTTTCTGAAATATGATATTCTGA
Found at i:46504406 original size:27 final size:27
Alignment explanation
Indices: 46504356--46504407 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
46504346 TTATCAATCC
* * *
46504356 TCTATTATTTTTGTTACTTGTTCTTAT
1 TCTATTATTGTTCTTACTTCTTCTTAT
*
46504383 TCTATTATTGTTCTTCCTTCTTCTT
1 TCTATTATTGTTCTTACTTCTTCTT
46504408 TGCTACTGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.12, C:0.17, G:0.06, T:0.65
Consensus pattern (27 bp):
TCTATTATTGTTCTTACTTCTTCTTAT
Found at i:46507353 original size:17 final size:18
Alignment explanation
Indices: 46507318--46507355 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
46507308 TGCGAGCCAA
* *
46507318 TTATATTTGTGTACTATG
1 TTATATTTGTGAACCATG
46507336 TTATA-TTGTGAACCATG
1 TTATATTTGTGAACCATG
46507353 TTA
1 TTA
46507356 ACTTGATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.26, C:0.08, G:0.16, T:0.50
Consensus pattern (18 bp):
TTATATTTGTGAACCATG
Found at i:46507580 original size:42 final size:42
Alignment explanation
Indices: 46507524--46507605 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
46507514 TATGATTTAT
* * *
46507524 GTGAGCTATGACATGAATTATATGAGAACTGTAACTCTAAGA
1 GTGAACTATGACATGAATGATATGAGAACTATAACTCTAAGA
*
46507566 GTGAACTATGACATGAATGATATGAGAAGTATAACTCTAA
1 GTGAACTATGACATGAATGATATGAGAACTATAACTCTAA
46507606 ATAAAATATG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (42 bp):
GTGAACTATGACATGAATGATATGAGAACTATAACTCTAAGA
Found at i:46524385 original size:16 final size:16
Alignment explanation
Indices: 46524364--46524399 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
46524354 TGTTTATAAG
46524364 TATGCGAACAGTATTC
1 TATGCGAACAGTATTC
46524380 TATGCGAACAGTATTC
1 TATGCGAACAGTATTC
46524396 TATG
1 TATG
46524400 TCTAGATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (16 bp):
TATGCGAACAGTATTC
Found at i:46524895 original size:42 final size:43
Alignment explanation
Indices: 46524848--46524941 Score: 129
Period size: 42 Copynumber: 2.2 Consensus size: 43
46524838 AAACCCATGT
* *
46524848 TTATCTTCTCCAATTTTTAAATTCTTTT-TC-ACCAAGCCAAGA
1 TTATCTTCTCCAATTTTCAAATTCTTTTCTCAACC-ACCCAAGA
**
46524890 TTATCTTCTCCTCTTTTCAAATTCTTTTCTCAACCACCCAAGA
1 TTATCTTCTCCAATTTTCAAATTCTTTTCTCAACCACCCAAGA
46524933 TTATCTTCT
1 TTATCTTCT
46524942 TTCTAAATTC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
42 25 0.54
43 18 0.39
44 3 0.07
ACGTcount: A:0.24, C:0.28, G:0.03, T:0.45
Consensus pattern (43 bp):
TTATCTTCTCCAATTTTCAAATTCTTTTCTCAACCACCCAAGA
Found at i:46529163 original size:37 final size:36
Alignment explanation
Indices: 46529116--46529261 Score: 113
Period size: 37 Copynumber: 3.9 Consensus size: 36
46529106 ATTCCAAAAA
*
46529116 TAATAATATTTTAATAGTTTAATATTAAATTTAAT-T
1 TAATATTATTTTAATAGTTTAATATT-AATTTAATAT
* *
46529152 TAATACTTATTTGAATAGTATT-TTATTAATTTAATAT
1 TAATA-TTATTTTAATAGT-TTAATATTAATTTAATAT
* * *
46529189 TAAAGTAATTATATTAGTA-TTTAAT-TTAATTTAATGT
1 T-AA-T-ATTATTTTAATAGTTTAATATTAATTTAATAT
*
46529226 T-CTATTATTTTAATAAGATTTAATATTAAATTTAAT
1 TAATATTATTTTAAT-AG-TTTAATATT-AATTTAAT
46529262 CTAATTAGTT
Statistics
Matches: 87, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
33 9 0.10
34 2 0.02
36 19 0.22
37 33 0.38
38 14 0.16
39 9 0.10
40 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (36 bp):
TAATATTATTTTAATAGTTTAATATTAATTTAATAT
Found at i:46534500 original size:17 final size:16
Alignment explanation
Indices: 46534478--46534519 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
46534468 TAAATAGGAT
46534478 TTTCTTTCT-TTTTCCTA
1 TTTCTTTCTCTTTT-C-A
46534495 TTTCTTCTCTCTTTTCA
1 TTTCTT-TCTCTTTTCA
46534512 TTTCTTTC
1 TTTCTTTC
46534520 CTCTCTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.09
17 13 0.57
18 4 0.17
19 4 0.17
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTCTTTCTCTTTTCA
Found at i:46538768 original size:13 final size:13
Alignment explanation
Indices: 46538750--46538806 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 13
46538740 TTGCAGCTTT
46538750 TTTTTTCTTTTCC
1 TTTTTTCTTTTCC
46538763 --TTTT-TTTTCC
1 TTTTTTCTTTTCC
* *
46538773 CTTTTTCTTTTCT
1 TTTTTTCTTTTCC
* *
46538786 TTTTTTATTTTTC
1 TTTTTTCTTTTCC
46538799 TTTTTTCT
1 TTTTTTCT
46538807 CTCCATGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
10 6 0.17
11 4 0.11
12 4 0.11
13 21 0.60
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTCTTTTCC
Found at i:46549955 original size:434 final size:434
Alignment explanation
Indices: 46549134--46549994 Score: 1526
Period size: 434 Copynumber: 2.0 Consensus size: 434
46549124 GCATTTAATT
46549134 GGGCTGCTTGGGACGAATTTTAACACATAATATTCCTAAAGCCTAAAAATTAAATTAAACAATTA
1 GGGCTGCTTGGGACGAATTTTAACACATAATATTCCTAAAGCCTAAAAATTAAATTAAACAATTA
*
46549199 AAATGTTTACAAATTGGGCCCTTTAACAATTTGGCCTGATTTTTAACTAAGTATGGGTGGACTTC
66 AAATGTTTACAAATTGGGCCCTTTAACAATTTGGCCTGATTTTCAACTAAGTATGGGTGGACTTC
*
46549264 CTTATTGGGCTTGGAATCTTCTTATTGGGCATTGCCTTCAAGAATTTGGGCTTGTGATCCATCTC
131 CTTATTGGGCTTGGAATCTTCTTATTGGGCATTGCCTTCAAGAACTTGGGCTTGTGATCCATCTC
*
46549329 CTACCGAAATCGGGTCGTTGATGCTCGTGACGGAGATCCAATGCGCTTTGGCTGCAAGATTCAGT
196 CTACCGAAATCGGGTCGTTGATGCTCGTGACGGAGATCCAATGCGCTTTGGCTACAAGATTCAGT
* *
46549394 TTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGGTCCAAAC
261 TTCTTGGACCAAGATTTCAAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCCAAAC
* *
46549459 AGCAAAATTGGGCCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTT
326 AGCAAAATTGGGCCAAGATTCGATTTCTTGATTTTCTTCAAAACAAGAAAGTGAATCTTGATTTT
46549524 CTCGTTCTTTCGTGTACGCATCTAAGGCCTTCGTGACCTTAAAC
391 CTCGTTCTTTCGTGTACGCATCTAAGGCCTTCGTGACCTTAAAC
* * * ** *
46549568 GGGCTGTTTGGGTCGAATTTTAATATGTAATATTCCTAAAGCCTAAAAATTAAATTAAACTATTA
1 GGGCTGCTTGGGACGAATTTTAACACATAATATTCCTAAAGCCTAAAAATTAAATTAAACAATTA
*
46549633 AAATGTTTACAAATTGGGCCCTTTGACAATTTGGCCTGATTTTCAACTAAGTATGGGTGGACTT-
66 AAATGTTTACAAATTGGGCCCTTTAACAATTTGGCCTGATTTTCAACTAAGTATGGGTGGACTTC
*
46549697 CTTGATTGGGCTTGGAATCTTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTGATCCATCT
131 CTT-ATTGGGCTTGGAATCTTCTTATTGGGCATTGCCTTCAAGAACTTGGGCTTGTGATCCATCT
* * *
46549762 CCTACCGAAATTGGGTCGTTGATGCTCGTGACGGAGATCTAATGCGCTTTGGCTACAAGATTCGG
195 CCTACCGAAATCGGGTCGTTGATGCTCGTGACGGAGATCCAATGCGCTTTGGCTACAAGATTCAG
*
46549827 TTTCTTGGACCAAGATTTCAAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCCATA
260 TTTCTTGGACCAAGATTTCAAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCCAAA
46549892 CAGCAAAATTGGGCCAAGATTCGATTTCTTGATTTTCTTCAAAACAAGAAAGTGAATCTTGATTT
325 CAGCAAAATTGGGCCAAGATTCGATTTCTTGATTTTCTTCAAAACAAGAAAGTGAATCTTGATTT
*
46549957 TCTCGTTCTTTCGTGTACGCATCTAAGGCCTTTGTGAC
390 TCTCGTTCTTTCGTGTACGCATCTAAGGCCTTCGTGAC
46549995 TCGTATCAGT
Statistics
Matches: 406, Mismatches: 20, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
433 3 0.01
434 403 0.99
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (434 bp):
GGGCTGCTTGGGACGAATTTTAACACATAATATTCCTAAAGCCTAAAAATTAAATTAAACAATTA
AAATGTTTACAAATTGGGCCCTTTAACAATTTGGCCTGATTTTCAACTAAGTATGGGTGGACTTC
CTTATTGGGCTTGGAATCTTCTTATTGGGCATTGCCTTCAAGAACTTGGGCTTGTGATCCATCTC
CTACCGAAATCGGGTCGTTGATGCTCGTGACGGAGATCCAATGCGCTTTGGCTACAAGATTCAGT
TTCTTGGACCAAGATTTCAAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCCAAAC
AGCAAAATTGGGCCAAGATTCGATTTCTTGATTTTCTTCAAAACAAGAAAGTGAATCTTGATTTT
CTCGTTCTTTCGTGTACGCATCTAAGGCCTTCGTGACCTTAAAC
Done.