Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 159 of 189
Found at i:47838093 original size:33 final size:33
Alignment explanation
Indices: 47838051--47838117 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
47838041 ATTTCACTTG
47838051 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
1 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
47838084 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
1 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
47838117 A
1 A
47838118 GATTAATGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (33 bp):
ATTTCCTCTGACTATTAATTGAAAATCTATGGA
Found at i:47839471 original size:10 final size:10
Alignment explanation
Indices: 47839434--47839475 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
47839424 TAGTAACATT
47839434 ACAAAATG-A
1 ACAAAATGAA
*
47839443 ACAAAGT-AA
1 ACAAAATGAA
47839452 ACAAAA-GAA
1 ACAAAATGAA
47839461 ACAAAATGAA
1 ACAAAATGAA
47839471 ACAAA
1 ACAAA
47839476 CTGCTCCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.71, C:0.12, G:0.10, T:0.07
Consensus pattern (10 bp):
ACAAAATGAA
Found at i:47845055 original size:41 final size:41
Alignment explanation
Indices: 47844889--47845044 Score: 226
Period size: 41 Copynumber: 3.8 Consensus size: 41
47844879 TTTATCGTTA
* * * * *
47844889 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAACGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
47844930 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
47844971 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
47845012 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
47845045 AAGAGCCGGT
Statistics
Matches: 106, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 101 0.95
42 2 0.02
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:47845317 original size:33 final size:33
Alignment explanation
Indices: 47845261--47845358 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
47845251 AGATATGTAT
*
47845261 ATATATATATATGT-TGCATTCGGCATAGGTGA
1 ATATATATATGTGTATGCATTCGGCATAGGTGA
*
47845293 ATATATTTATGTGTATGCATTCGGCATAGGTGA
1 ATATATATATGTGTATGCATTCGGCATAGGTGA
* * *
47845326 AAATAAGTGTATGTATCTATGCATTCGGCATAG
1 ATAT-A-TATATG--TGTATGCATTCGGCATAG
47845359 ATGGGTATAG
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 21 0.38
34 1 0.02
35 5 0.09
37 17 0.30
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (33 bp):
ATATATATATGTGTATGCATTCGGCATAGGTGA
Found at i:47852734 original size:41 final size:41
Alignment explanation
Indices: 47852527--47852723 Score: 308
Period size: 41 Copynumber: 4.8 Consensus size: 41
47852517 TTTATCGTTA
* * * * *
47852527 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAACGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
47852568 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
47852609 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
47852650 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
47852691 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
47852724 AAGAGCCGGT
Statistics
Matches: 147, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 142 0.97
42 2 0.01
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:47852981 original size:30 final size:32
Alignment explanation
Indices: 47852942--47853015 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 32
47852932 ATATGTATAT
47852942 ATATATA-TGT-TGCATTCGGCATAGGTGAAC
1 ATATATAGTGTATGCATTCGGCATAGGTGAAC
*
47852972 ATATTTATGTGTATGCATTCGGCATAGGTGAA-
1 ATATATA-GTGTATGCATTCGGCATAGGTGAAC
47853004 A-ATA-AGTGTATG
1 ATATATAGTGTATG
47853016 TATCTATGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
29 7 0.18
30 7 0.18
31 2 0.05
32 4 0.10
33 19 0.49
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.35
Consensus pattern (32 bp):
ATATATAGTGTATGCATTCGGCATAGGTGAAC
Found at i:47852989 original size:33 final size:36
Alignment explanation
Indices: 47852952--47853035 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 36
47852942 ATATATATGT
* * *
47852952 TGCATTCGGCATAGGTGAACAT-A-TTTATG-TGTA
1 TGCATTCGGCATAGGTGAAAATAAGTGTATGATCTA
47852985 TGCATTCGGCATAGGTGAAAATAAGTGTATGTATCTA
1 TGCATTCGGCATAGGTGAAAATAAGTGTATG-ATCTA
47853022 TGCATTCGGCATAG
1 TGCATTCGGCATAG
47853036 ATGGGTATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
33 21 0.48
34 1 0.02
35 5 0.11
37 17 0.39
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (36 bp):
TGCATTCGGCATAGGTGAAAATAAGTGTATGATCTA
Found at i:47857805 original size:13 final size:13
Alignment explanation
Indices: 47857787--47857813 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
47857777 AAAAGTTTCT
47857787 TACCAAATCTATA
1 TACCAAATCTATA
47857800 TACCAAATCTATA
1 TACCAAATCTATA
47857813 T
1 T
47857814 TTTACCCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (13 bp):
TACCAAATCTATA
Found at i:47871316 original size:41 final size:41
Alignment explanation
Indices: 47871271--47871349 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
47871261 TGTTTTACCA
* *
47871271 AGCATGGACTCCCATGCCTATTGATTATGTTATTGTATGAT
1 AGCATGAACTCCCATGCCTATTGATTATATTATTGTATGAT
* *
47871312 AGCATGAACTCGCATGCCTATTGATTCTATTATTGTAT
1 AGCATGAACTCCCATGCCTATTGATTATATTATTGTAT
47871350 TAATTATTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (41 bp):
AGCATGAACTCCCATGCCTATTGATTATATTATTGTATGAT
Found at i:47871724 original size:15 final size:15
Alignment explanation
Indices: 47871704--47871738 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
47871694 CATACATTTA
*
47871704 TTGTTCTTTTCTACT
1 TTGTTCTGTTCTACT
*
47871719 TTGTTCTGTTCTATT
1 TTGTTCTGTTCTACT
47871734 TTGTT
1 TTGTT
47871739 GTACTACCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.14, G:0.11, T:0.69
Consensus pattern (15 bp):
TTGTTCTGTTCTACT
Found at i:47874343 original size:19 final size:18
Alignment explanation
Indices: 47874319--47874408 Score: 58
Period size: 19 Copynumber: 4.9 Consensus size: 18
47874309 ATTCCAAAAA
47874319 TAATATTATTTTAATAGTT
1 TAATATTATTTTAATA-TT
** **
47874338 TAATATTAAATTAATAAAA
1 TAATATTATTTTAAT-ATT
* *
47874357 TACTATTAATTTAATATT
1 TAATATTATTTTAATATT
* *
47874375 AAAGTGATTATCTT-A-ATT
1 TAA-T-ATTATTTTAATATT
47874393 TAATATTATTTTAATA
1 TAATATTATTTTAATA
47874409 AGATTTAATA
Statistics
Matches: 52, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
16 7 0.13
17 2 0.04
18 8 0.15
19 28 0.54
20 7 0.13
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.50
Consensus pattern (18 bp):
TAATATTATTTTAATATT
Found at i:47876551 original size:14 final size:14
Alignment explanation
Indices: 47876532--47876564 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
47876522 TTTCGAATTG
47876532 TACACGCGTTGGCC
1 TACACGCGTTGGCC
47876546 TACACGCGTTGGCC
1 TACACGCGTTGGCC
47876560 -ACACG
1 TACACG
47876565 GCTTGGCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (14 bp):
TACACGCGTTGGCC
Found at i:47876570 original size:13 final size:13
Alignment explanation
Indices: 47876533--47876573 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 13
47876523 TTCGAATTGT
47876533 ACACGCGTTGGCC
1 ACACGCGTTGGCC
47876546 TACACGCGTTGGCC
1 -ACACGCGTTGGCC
47876560 ACACG-GCTTGGCC
1 ACACGCG-TTGGCC
47876573 A
1 A
47876574 TACGATCGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 1 0.04
13 12 0.46
14 13 0.50
ACGTcount: A:0.17, C:0.37, G:0.29, T:0.17
Consensus pattern (13 bp):
ACACGCGTTGGCC
Found at i:47878375 original size:43 final size:44
Alignment explanation
Indices: 47878272--47878386 Score: 119
Period size: 43 Copynumber: 2.6 Consensus size: 44
47878262 TGAGTTATCG
*
47878272 TGTAAGACCACGTCTGGGACGTTGGCATCAATTTGGGATTTACA
1 TGTAAGACCACGTCTGGGAAGTTGGCATCAATTTGGGATTTACA
* *** * *
47878316 TGTAAGGCCTTATCTGGGATAG-TGGCATCGATGTT-TGA-TTACA
1 TGTAAGACCACGTCTGGGA-AGTTGGCATCAAT-TTGGGATTTACA
*
47878359 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGAAGTTGGCAT
47878387 TGGACGAGCT
Statistics
Matches: 56, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
42 1 0.02
43 26 0.46
44 26 0.46
45 3 0.05
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGAAGTTGGCATCAATTTGGGATTTACA
Found at i:47880539 original size:13 final size:13
Alignment explanation
Indices: 47880521--47880545 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47880511 CATGGGCATA
47880521 TGGACCATACGGG
1 TGGACCATACGGG
47880534 TGGACCATACGG
1 TGGACCATACGG
47880546 CCCTTCACAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.36, T:0.16
Consensus pattern (13 bp):
TGGACCATACGGG
Found at i:47881065 original size:38 final size:38
Alignment explanation
Indices: 47880970--47881065 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 38
47880960 ACAACCTTAT
* * * *
47880970 TGAATACATGTTAAAGCATGTTCACTACTTGTGTTGAAC
1 TGAATACATGTT-AAGCATGTTAACTACTAGTGATCAAC
* * * *
47881009 TGAATAGACGTTAAGCATGTTAATTCCTAGTGATCAAC
1 TGAATACATGTTAAGCATGTTAACTACTAGTGATCAAC
*
47881047 TGAATACATGTTACGCATG
1 TGAATACATGTTAAGCATG
47881066 ATTACTGCTA
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
38 36 0.78
39 10 0.22
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (38 bp):
TGAATACATGTTAAGCATGTTAACTACTAGTGATCAAC
Found at i:47886950 original size:41 final size:41
Alignment explanation
Indices: 47886893--47887104 Score: 343
Period size: 41 Copynumber: 5.1 Consensus size: 41
47886883 TATCTTATGC
* * *
47886893 GATCTGAATCAGGTTATAAACCTAGTAGGCTAAGTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
* * * *
47886934 GATCTAAATCAGGTTATAAACCTAGCAGGCTAACTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
47886975 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
47887016 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
*
47887057 GATCTGAATCAGGCTATATGCCTAGCAGGCTAAGTGCCGGT
1 GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
47887098 GAATCTG
1 G-ATCTG
47887105 TTAAATTAAG
Statistics
Matches: 162, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
41 157 0.97
42 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (41 bp):
GATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGT
Found at i:47890804 original size:3 final size:3
Alignment explanation
Indices: 47890786--47890853 Score: 77
Period size: 3 Copynumber: 23.0 Consensus size: 3
47890776 GAAATAAAAC
*
47890786 TAA TAA CAA TTAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
47890831 TGA TAA TAA CAT TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
47890854 AATTGCTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
2 4 0.07
3 49 0.89
4 2 0.04
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:47892589 original size:44 final size:44
Alignment explanation
Indices: 47892534--47892876 Score: 204
Period size: 44 Copynumber: 7.8 Consensus size: 44
47892524 AAAATTCGCC
*
47892534 ATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
* ** *
47892578 ATCTTCAATCTATTCCACTACTGCCCAGGGAGAT-AGAACTACT-
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTA-TA
** * * **
47892621 GGCTTCAATGC-ACTCCACTGTAAC--CTTAGGGAGGTAAAAT-TCACC
1 ATCTTCAAT-CTACTCCAC--T-ACTGCTTAGGGAGATAAGATCT-ATA
* *
47892666 ATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
* **
47892710 ATCTTCAATCTATTCCACTACTGCCCAGGGAGAT-AGAAT-TACT-
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAG-ATCTA-TA
** * ** * * ****
47892753 GGCTTCAATGTACTCCACTGTAAC--CACAGGGAGGTAAAATCCGCC
1 ATCTTCAATCTACTCCAC--T-ACTGCTTAGGGAGATAAGATCTATA
* * * *
47892798 ATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
* * *
47892842 ATCTTCAATCTATTCCACTGCTGCCTAGGGAGATA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGATA
47892877 GAATTACTGG
Statistics
Matches: 221, Mismatches: 56, Indels: 44
0.69 0.17 0.14
Matches are distributed among these distances:
42 4 0.02
43 38 0.17
44 142 0.64
45 33 0.15
46 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
Found at i:47892712 original size:132 final size:132
Alignment explanation
Indices: 47892474--47893392 Score: 1053
Period size: 132 Copynumber: 7.1 Consensus size: 132
47892464 GCAACATCGA
** *
47892474 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTAAGGAGGTAAAATTCGCCATCTT
1 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCGCCATCTT
* * *
47892539 CGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTACTGCCC
66 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
47892604 AG
131 AG
* * ** *
47892606 GGAGATAGAACTACTGGCTTCAATGCACTCCACTGTAACCTTAGGGAGGTAAAATTCACCATCTT
1 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCGCCATCTT
* *
47892671 CGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTGCCC
66 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
47892736 AG
131 AG
*
47892738 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTT
1 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCGCCATCTT
* *
47892803 CGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCT
66 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
47892868 AG
131 AG
* * *
47892870 GGAGATAGAATTACTGGCTTCAATGTACCCCACTATAACCACAGGGAGGTAAAA-TCTGCCATTT
1 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTC-GCCATCT
* * * * ***
47892934 TCGATCTGCTCCACTCCTGCTTAGGGAGATAAGATCTGAAATCTTTAATCTATTCCATTGCCAAC
65 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
* *
47892999 TAA
130 CAG
* * ** *
47893002 GGAGATAGAATTA-TCGACTTCAATGTACTCCACTATAGTCATAGGGAGGTAAAA-TCTGCCATC
1 GGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTC-GCCATC
* * * ***
47893065 TTCAATCTGCT-C-C-ACT--TT-GGGAGATAAGATATGAAATCTTCAATCTATTCCACTGCCAA
64 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGC
*
47893124 CTAG
129 CCAG
* *
47893128 GGAGATAGAATTA-TCGGCTTCAATGTACTTCACTGTAATCACAGGGAGGTAAAA-TCTGCCATC
1 GGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTC-GCCATC
* * **
47893191 TTCAATCCGCT-C-C-ACT--TT-GGGAGATAAGATCT-TCAATCTTCAATCTATTCCACTGCCA
64 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT-AATCTTCAATCTATTCCACTGCTG
*
47893249 ACCAG
128 CCCAG
* * *
47893254 GGTGATAGAATTA-TCGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAAATT-GTCATC
1 GGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAACCACAGGGAGGT-AAAATTCGCCATC
* * * ** * ***
47893317 TTCAATCTACT-C-C-ACT--TT-GAGAGATAAGATCTAAAATCTTCAATCTATTCCATTGCCAA
64 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGC
47893376 CCAG
129 CCAG
47893380 GGAGATAGAATTA
1 GGAGATAGAATTA
47893393 TCAATCTTCC
Statistics
Matches: 723, Mismatches: 58, Indels: 18
0.90 0.07 0.02
Matches are distributed among these distances:
126 279 0.39
127 6 0.01
128 1 0.00
129 2 0.00
130 1 0.00
131 3 0.00
132 431 0.60
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCGCCATCTT
CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
AG
Found at i:47892872 original size:88 final size:87
Alignment explanation
Indices: 47892518--47892876 Score: 239
Period size: 88 Copynumber: 4.1 Consensus size: 87
47892508 GTAACCTTAA
* * *
47892518 GGAGGTAAAATTCGCCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTT
1 GGAGATAAAATCCGCCATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCT-TAATCTT
*
47892583 CAATCTATTCCACTACTGCCCAG
65 CAATCTACTCCACTACTGCCCAG
* ** *** * * *
47892606 GGAGATAGAA-CTACTGGCTTCAATGC-ACTCCACTGTAAC--CTTAGGGAGGTAAAAT-TCACC
1 GGAGATAAAATCCGCCATCTTCAAT-CTACTCCAC--T-ACTGCTTAGGGAGATAAGATCTTA--
* **
47892666 ATCTTCGATCTACTCCACTACTGCTTAG
60 ATCTTCAATCTACTCCACTACTGCCCAG
* * ** * ** * *
47892694 GGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTGCCCAGGGAGAT-AGA-ATTACTGGCT
1 GGAGATAAAATCCGCCATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTTAAT--CT
* * *
47892757 TCAATGTACTCCACT-GTAACCACAG
64 TCAATCTACTCCACTACT-GCC-CAG
* * * *
47892782 GGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGTAATCTT
1 GGAGATAAAATCCGCCATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCT-TAATCTT
* * *
47892847 CAATCTATTCCACTGCTGCCTAG
65 CAATCTACTCCACTACTGCCCAG
47892870 GGAGATA
1 GGAGATA
47892877 GAATTACTGG
Statistics
Matches: 197, Mismatches: 55, Indels: 38
0.68 0.19 0.13
Matches are distributed among these distances:
85 1 0.01
86 4 0.02
87 36 0.18
88 113 0.57
89 36 0.18
90 4 0.02
91 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (87 bp):
GGAGATAAAATCCGCCATCTTCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTTAATCTTC
AATCTACTCCACTACTGCCCAG
Found at i:47894656 original size:6 final size:6
Alignment explanation
Indices: 47894645--47894754 Score: 97
Period size: 6 Copynumber: 18.3 Consensus size: 6
47894635 CCTCTCCTTC
*
47894645 TTCTTT TTC-TT TT-TTT TTCTTT TTCTTT TTCTTT TCCTTT CTTCTTT
1 TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT -TTCTTT
*
47894692 CTT-TTC TTC-TT TTCTTT CTT-TTT TCTCTTT TCTCTTT TTCTTT TT-TTT
1 -TTCTTT TTCTTT TTCTTT -TTCTTT T-TCTTT T-TCTTT TTCTTT TTCTTT
*
47894740 TATTTTT TTCTTT TT
1 T-TCTTT TTCTTT TT
47894755 TGAATATGAA
Statistics
Matches: 89, Mismatches: 5, Indels: 20
0.78 0.04 0.18
Matches are distributed among these distances:
5 19 0.21
6 45 0.51
7 25 0.28
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (6 bp):
TTCTTT
Found at i:47894666 original size:16 final size:16
Alignment explanation
Indices: 47894645--47894754 Score: 109
Period size: 17 Copynumber: 6.5 Consensus size: 16
47894635 CCTCTCCTTC
47894645 TTCTTTTTCTTTTTTT
1 TTCTTTTTCTTTTTTT
47894661 TTCTTTTTCTTTTTCTT
1 TTCTTTTTCTTTTT-TT
47894678 TTCCTTTCTTCTTTCTTTT
1 TT-CTTT-TTCTTT-TTTT
47894697 CTTC-TTTTCTTTCTTTT
1 -TTCTTTTTCTTT-TTTT
47894714 TTCTCTTTTCTCTTTTTCT
1 TTCT-TTTTCT-TTTTT-T
*
47894733 TT-TTTTT-TATTTTT
1 TTCTTTTTCTTTTTTT
47894747 TTCTTTTT
1 TTCTTTTT
47894755 TGAATATGAA
Statistics
Matches: 83, Mismatches: 1, Indels: 21
0.79 0.01 0.20
Matches are distributed among these distances:
14 3 0.04
15 9 0.11
16 18 0.22
17 19 0.23
18 16 0.19
19 14 0.17
20 4 0.05
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (16 bp):
TTCTTTTTCTTTTTTT
Found at i:47894755 original size:16 final size:15
Alignment explanation
Indices: 47894648--47894755 Score: 83
Period size: 16 Copynumber: 6.9 Consensus size: 15
47894638 CTCCTTCTTC
47894648 TTTTTCTTTTTTTTT
1 TTTTTCTTTTTTTTT
47894663 CTTTTTCTTTTTCTTTT
1 -TTTTTCTTTTT-TTTT
** * *
47894680 CCTTTCTTCTTTCTT
1 TTTTTCTTTTTTTTT
* *
47894695 TTCTTCTTTTCTTTCT
1 TTTTTCTTTT-TTTTT
* * *
47894711 TTTTTCTCTTTTCTC
1 TTTTTCTTTTTTTTT
47894726 TTTTTCTTTTTTTTT
1 TTTTTCTTTTTTTTT
47894741 ATTTTT-TTCTTTTTT
1 -TTTTTCTT-TTTTTT
47894756 GAATATGAAC
Statistics
Matches: 70, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
15 25 0.36
16 41 0.59
17 4 0.06
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTCTTTTTTTTT
Found at i:47898414 original size:38 final size:38
Alignment explanation
Indices: 47898336--47898431 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 38
47898326 ACAACCTTAT
* * * *
47898336 TGAATACATGTTAAAGCATGTTTACTACTTGTCTTGAAC
1 TGAATACATGTT-AAGCATGTTAACTACTAGTCATCAAC
* * *
47898375 TGAATACATGTTAAGCATGTTAATTCCTAGTGATCAAC
1 TGAATACATGTTAAGCATGTTAACTACTAGTCATCAAC
* *
47898413 TGAACAAATGTTAAGCATG
1 TGAATACATGTTAAGCATG
47898432 ATTACTGCTA
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
38 36 0.75
39 12 0.25
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (38 bp):
TGAATACATGTTAAGCATGTTAACTACTAGTCATCAAC
Found at i:47899243 original size:46 final size:47
Alignment explanation
Indices: 47899187--47899311 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 47
47899177 TAATACGTTA
* * *
47899187 TGGATGAACCATTGGTCGAGCAGGTGACTGTTGGCTAAAATAT-TGG
1 TGGATGAACCATTGGTCGAGCAGATGACTGCTGACTAAAATATGTGG
* * * *
47899233 TGGATGAACCATTGGTTGAGTAGATGATTGCTGACTAAAATATGTTG
1 TGGATGAACCATTGGTCGAGCAGATGACTGCTGACTAAAATATGTGG
* * * *
47899280 TGGATAAACCACTGGTCTAGCATATGACTGCT
1 TGGATGAACCATTGGTCGAGCAGATGACTGCT
47899312 AACATGACAT
Statistics
Matches: 64, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
46 37 0.58
47 27 0.42
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (47 bp):
TGGATGAACCATTGGTCGAGCAGATGACTGCTGACTAAAATATGTGG
Found at i:47903925 original size:7 final size:7
Alignment explanation
Indices: 47903913--47903947 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
47903903 TAAATATTTT
47903913 TTAATTA
1 TTAATTA
47903920 TTAATTA
1 TTAATTA
47903927 TTAATTA
1 TTAATTA
47903934 TTAATTA
1 TTAATTA
47903941 TTAATTA
1 TTAATTA
47903948 ATAAATACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTAATTA
Found at i:47906926 original size:58 final size:60
Alignment explanation
Indices: 47906847--47906967 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 60
47906837 ATTTTTTATT
**
47906847 TAAGATTTTTTTTATTCCAATTTGATACTCAAACTTGACATTA-TTACTAAGTTAGTATC
1 TAAGATTTTTTTTATTCCAATTTGATACTCAAACTTGACAAAATTTACTAAGTTAGTATC
* ** * *
47906906 TAAG-TTTTTTTT-TTGTCAATTTGATACTTGAACTTGACAAAATTTCCTAATTTAGTATC
1 TAAGATTTTTTTTATT-CCAATTTGATACTCAAACTTGACAAAATTTACTAAGTTAGTATC
47906965 TAA
1 TAA
47906968 ACTTGTCAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
57 2 0.04
58 30 0.57
59 21 0.40
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.47
Consensus pattern (60 bp):
TAAGATTTTTTTTATTCCAATTTGATACTCAAACTTGACAAAATTTACTAAGTTAGTATC
Found at i:47907651 original size:27 final size:25
Alignment explanation
Indices: 47907604--47907654 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
47907594 ATCAAATTGG
*
47907604 AAAAAAAAAACTTAAATACCAAATT
1 AAAAAAAAAACTTAAACACCAAATT
*
47907629 AAAAAAATAACTTCAAAGCACCAAAT
1 AAAAAAAAAACTT-AAA-CACCAAAT
47907655 ATTATATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.55
26 3 0.14
27 7 0.32
ACGTcount: A:0.65, C:0.16, G:0.02, T:0.18
Consensus pattern (25 bp):
AAAAAAAAAACTTAAACACCAAATT
Found at i:47908035 original size:16 final size:17
Alignment explanation
Indices: 47908001--47908034 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
47907991 TAATGCAAGT
47908001 ATGGATTCGAAATTAAA
1 ATGGATTCGAAATTAAA
47908018 ATGGATTC-AAATCTAAA
1 ATGGATTCGAAAT-TAAA
47908035 TTAAAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (17 bp):
ATGGATTCGAAATTAAA
Found at i:47908693 original size:14 final size:14
Alignment explanation
Indices: 47908674--47908700 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
47908664 TGTTTCCCAT
47908674 TAATTTTTTTTAGA
1 TAATTTTTTTTAGA
47908688 TAATTTTTTTTAG
1 TAATTTTTTTTAG
47908701 TTGGACGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (14 bp):
TAATTTTTTTTAGA
Found at i:47909344 original size:23 final size:23
Alignment explanation
Indices: 47909320--47909364 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
47909310 TGAAAAACAT
47909320 ATATTTTTT-A-ATTATTTTAAA
1 ATATTTTTTAATATTATTTTAAA
*
47909341 ATATTTTTTAATATTTTTTTAAA
1 ATATTTTTTAATATTATTTTAAA
47909364 A
1 A
47909365 AAAATTGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.43
22 1 0.05
23 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
ATATTTTTTAATATTATTTTAAA
Found at i:47909358 original size:10 final size:10
Alignment explanation
Indices: 47909320--47909359 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
47909310 TGAAAAACAT
47909320 ATATTTTTTA
1 ATATTTTTTA
**
47909330 ATTATTTTAAA
1 A-TATTTTTTA
47909341 ATATTTTTTA
1 ATATTTTTTA
47909351 ATATTTTTT
1 ATATTTTTT
47909360 TAAAAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATATTTTTTA
Found at i:47919002 original size:31 final size:31
Alignment explanation
Indices: 47918967--47919032 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
47918957 TTTTTTTTCC
47918967 ATATACACAACAATATAACTAAAATTAATAA
1 ATATACACAACAATATAACTAAAATTAATAA
47918998 ATATACACAACAATATAACTAAAATTAATAA
1 ATATACACAACAATATAACTAAAATTAATAA
47919029 ATAT
1 ATAT
47919033 TTTTTTTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (31 bp):
ATATACACAACAATATAACTAAAATTAATAA
Found at i:47921370 original size:20 final size:20
Alignment explanation
Indices: 47921345--47921395 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
47921335 ATCAATTATT
*
47921345 TATAAAATTTAATTTAAATA
1 TATAAAATATAATTTAAATA
* *
47921365 TATAAACTATATTTTAAATA
1 TATAAAATATAATTTAAATA
47921385 T-TAAAATATAA
1 TATAAAATATAA
47921396 CCAATAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TATAAAATATAATTTAAATA
Found at i:47921639 original size:13 final size:13
Alignment explanation
Indices: 47921621--47921684 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
47921611 AGTTTGGCAA
47921621 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
47921634 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
47921647 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
47921660 TGCTTTTGAGAAC
1 TGCTTTTGAAAAG
*
47921673 TACTTTTGAAAA
1 TGCTTTTGAAAA
47921685 ATTTGAGTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:47922593 original size:34 final size:35
Alignment explanation
Indices: 47922547--47922616 Score: 115
Period size: 34 Copynumber: 2.0 Consensus size: 35
47922537 TTTTTATTAA
*
47922547 AATTTCTATAAAATTTCTGT-AAAATCAATCAATC
1 AATTTCTATAAAATTTCTGTAAAAATCAAACAATC
*
47922581 AATTTCTGTAAAATTTCTGTAAAAATCAAACAATC
1 AATTTCTATAAAATTTCTGTAAAAATCAAACAATC
47922616 A
1 A
47922617 GAAAACAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 19 0.58
35 14 0.42
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (35 bp):
AATTTCTATAAAATTTCTGTAAAAATCAAACAATC
Found at i:47928563 original size:3 final size:3
Alignment explanation
Indices: 47928557--47928587 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
47928547 TAAACTAATC
47928557 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
47928588 CACCATCATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:47934311 original size:89 final size:89
Alignment explanation
Indices: 47933431--47934301 Score: 841
Period size: 89 Copynumber: 9.8 Consensus size: 89
47933421 GTCATCATAT
** * *
47933431 CCAGCCTGACCTCCCTGAGTTTGTAGCGGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTGTAC
1 CCAGCCTGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
** * * *
47933496 CAGTAACGAAGCAGACCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * ** * * *
47933520 CCAGCCTGACTTCCCTAAGTTTGTAGCGGAGCAGACTGAAGATAGCTGATATTATCTTCCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
*
47933585 TGTCAGCGAAGCAGATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * *
47933609 CTAGTCTTG-CCTCCCTGAATTTACAGCGGAGCAGACTGAAGATAGCATATCTTGTCTTTCTGTA
1 CCAG-CCTGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTA
** * * *
47933673 CCGACAGTGAAGTAGATCGAAGACA
65 TTGGCAGCGAAGCAGATCGAAGACA
* * * * * * * *
47933698 CCAGCCTGACATCCTTGAGTTTGCAACGGAGTAGACTGAAGATAGCAAATCTTATCTTCCGGTAT
1 CCAGCCTGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
*
47933763 TGGCAGCGAAGCAGATTGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * ** ** * * *
47933787 CCAGCCTCACTTCATTGAGTTTACAGCATAGCATACTAAAGATAGCAGATTTTGTCTTCCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
* * *
47933852 TGGCAGCAAAACAGATCAAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * * *
47933876 CCAGCCTCG-TCTCCCT-ATATTTACGGCGGAGCAGACTGAAGATTGTAGATCTTGTATTCCGGT
1 CCAGCCT-GACCTCCCTGA-GTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGT
* * * *
47933939 ACTAGCAGCAAACCAGATCGAAGACA
64 ATTGGCAGCGAAGCAGATCGAAGACA
* * * * * * * *
47933965 CCAGCCTGACCTCCCTGAATTTACAGTGAAGTAGACTGAAGATGGCAGGTCTTGTCTTCTTGTAA
1 CCAGCCTGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
*
47934030 CGGCAGCGAAGCAGATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * * **
47934054 CTAGCCTGACCTCCTTGAGTTTGCAGTGGAGCAGACTGAAGATAGCACATCTTGTCTTTCTGTGC
1 CCAGCCTGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
* * * *
47934119 CGACAGTGAAGCAAATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * *
47934143 CTAGCCTGACCTCCCTGAATTTACAGTGGAGCAGACTAAAGATAGCAGATCTTGTCTTTCTGTAT
1 CCAGCCTGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
*
47934208 TGGCAGCGAAGTAGATCGAAGACA
66 TGGCAGCGAAGCAGATCGAAGACA
* * * * * * *
47934232 CCAGCCTTG-CCTCCCTGATTTTGCAGCGAAGCAGACTGAAGATTGTAGATCTCGTCTTCCTATA
1 CCAGCC-TGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTA
47934296 TTGGCA
65 TTGGCA
47934302 TTGAAGTAGA
Statistics
Matches: 634, Mismatches: 141, Indels: 14
0.80 0.18 0.02
Matches are distributed among these distances:
88 5 0.01
89 623 0.98
90 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (89 bp):
CCAGCCTGACCTCCCTGAGTTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
TGGCAGCGAAGCAGATCGAAGACA
Found at i:47934324 original size:267 final size:266
Alignment explanation
Indices: 47933431--47934321 Score: 942
Period size: 267 Copynumber: 3.3 Consensus size: 266
47933421 GTCATCATAT
* * * *
47933431 CCAGCCTGACCTCCCTGAGTTTGTAGCGGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTGTAC
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGAAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
* * * * * * *
47933496 CAGTAACGAAGCAGACCGAAGACACCAGCCTGACTTCCCTAAGTTTGTAGCGGAGCAGACTGAAG
66 CGGCAGCGAAGCAGACTGAAGACACCAGCCTGACTTCCTTGAGTTTGCAGCGGAGCAGACTGAAG
* * * *
47933561 ATAGCTGATATTATCTTCCTGTATTGTCAGCGAAGCAGATCGAAGACACTAGTCTTGCCTCCCTG
131 ATAGCAGATATTGTCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACTAG-CCTGCCTCCCTG
* * * *
47933626 AATTTACAGCGGAGCAGACTGAAGATAGCATATCTTGTCTTTCTGTACCGACAGTGAAGTAGATC
195 AATTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGATC
47933691 GAAGACA
260 GAAGACA
* * * * * * * *
47933698 CCAGCCTGACATCCTTGAGTTTGCAACGGAGTAGACTGAAGATAGCAAATCTTATCTTCCGGTAT
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGAAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
* * * * * ** * *
47933763 TGGCAGCGAAGCAGATTGAAGACACCAGCCTCACTTCATTGAGTTTACAGCATAGCATACTAAAG
66 CGGCAGCGAAGCAGACTGAAGACACCAGCCTGACTTCCTTGAGTTTGCAGCGGAGCAGACTGAAG
* * * * * * *
47933828 ATAGCAGATTTTGTCTTCCTGTATTGGCAGCAAAACAGATCAAAGACACCAGCCTCGTCTCCCT-
131 ATAGCAGATATTGTCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACTAGCCT-GCCTCCCTG
* * * * * * * * **
47933892 ATATTTACGGCGGAGCAGACTGAAGATTGTAGATCTTGTATTCCGGTACTAGCAGCAAACCAGAT
195 A-ATTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGAT
47933957 CGAAGACA
259 CGAAGACA
* * * * * * * *
47933965 CCAGCCTGACCTCCCTGAATTTACAGTGAAGTAGACTGAAGATGGCAGGTCTTGTCTTCTTGTAA
1 CCAGCCTGACCTCCCTGAGTTTGCAGCGAAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
* * *
47934030 CGGCAGCGAAGCAGA-TCGAAGACACTAGCCTGACCTCCTTGAGTTTGCAGTGGAGCAGACTGAA
66 CGGCAGCGAAGCAGACT-GAAGACACCAGCCTGACTTCCTTGAGTTTGCAGCGGAGCAGACTGAA
* * * *** * *
47934094 GATAGCACATCTTGTCTTTCTGTGCCGACAGTGAAGCAAATCGAAGACACTAGCCTGACCTCCCT
130 GATAGCAGATATTGTCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACTAGCCTG-CCTCCCT
* * *
47934159 GAATTTACAGTGGAGCAGACTAAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGCGAAGTAGAT
194 GAATTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGAT
47934224 CGAAGACA
259 CGAAGACA
* * * * *
47934232 CCAGCCTTG-CCTCCCTGATTTTGCAGCGAAGCAGACTGAAGATTGTAGATCTCGTCTTCCTATA
1 CCAGCC-TGACCTCCCTGAGTTTGCAGCGAAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTA
* ** * *
47934296 TTGGCATTGAAGTAGACTAAAGACAC
65 TCGGCAGCGAAGCAGACTGAAGACAC
47934322 TAGTCCTATC
Statistics
Matches: 499, Mismatches: 118, Indels: 14
0.79 0.19 0.02
Matches are distributed among these distances:
266 5 0.01
267 490 0.98
268 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (266 bp):
CCAGCCTGACCTCCCTGAGTTTGCAGCGAAGCAGACTGAAGATAGCAGATCTTGTCTTCCTGTAT
CGGCAGCGAAGCAGACTGAAGACACCAGCCTGACTTCCTTGAGTTTGCAGCGGAGCAGACTGAAG
ATAGCAGATATTGTCTTCCTGTATTGACAGCGAAGCAGATCGAAGACACTAGCCTGCCTCCCTGA
ATTTACAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTTTCTGTACTGGCAGCGAAGTAGATCG
AAGACA
Found at i:47934527 original size:100 final size:100
Alignment explanation
Indices: 47934353--47940324 Score: 6589
Period size: 100 Copynumber: 59.8 Consensus size: 100
47934343 ATAGTGGAAT
* * * * * *
47934353 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGACAGTGTAGTGGAACATATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * *
47934418 CAGCGAATCTTACTTCCTCGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
** * * * *
47934453 AGATTGAAATCACAACGGCGAATCTTACTTTCCTTGCGGTACAGTGGACCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** ** *
47934518 CGGCAAATCTTGCTTCCCAAACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
** * ** * **
47934553 AGATTGAAGGTACAACAGCGAATCTTACTTCCCTGGCGGCACAGTGAAACAGATACAAGC-ACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** *
47934617 CGGTGAATCTTATTTCCCCGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
47934652 AGATTGAAGCCACAACAGCGAATCATACTTCCCTAGTGGTGCAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
*
47934717 CGGTGAATCTGGC-TCTCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTC-CCCGACATTGCAATTAAAA
* *
47934752 AGATTGAAGCCACAACGGCGAATCTTACTTCTCTGGCGGTACAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
*
47934817 CGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47934852 AGATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCCGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * * * *
47934917 TAGCGAATCTTGC-TCCACAACATTGCAAATAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * ** *
47934951 AGATTGAAGCCACAACGGTGAACCTTACTTCCCTGTCGGTATAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * *
47935016 TAGTGAATCTTGCTTCCCCGATATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47935051 AGATTGAAGCCACAACAGTGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
47935116 CGGTAAAT-TATGTTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCT-TGCTTCCCCGACATTGCAATTAAAA
* * * *
47935151 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCGACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
47935216 CGGTGAATCTGGCTCCCCCGACATTGCAATGAGAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* *
47935251 AGTTTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** ** *
47935316 CGGTGAATCTTATTTCCCTAACATTGCAACTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
** * * * *
47935351 AGATTGAAGCCACAATAGTGAATCTTACTTCTCTGGCGGTACAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * * *
47935416 CAGCGAATCTTAC-TCCACGACATTGTAGTTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47935450 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGTAGGGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
47935515 CGATGAATCTTGTTTCTCGGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47935550 AGATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *** * *
47935615 CGGCGAATCTTGCATCCAAAATATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * *
47935650 AGATTGAAGCTACAATGGAGAATCTTACTTCCCTAGCGGAGCAGTGGAATAGATTCAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * *
47935715 CGGTGAATCTTATTTCCCCGACACTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* ** ** * ** *
47935750 AGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGCAATGGAGTAGATTGAATCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** *
47935815 CGGCGAATCAGGCTCCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* *
47935850 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
47935915 TGGGGAATCTTGTTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
47935950 AGATT-AAGGCCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGGCACAAATTGAAGCTACA
1 AGATTGAA-GCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACA
* * * *** * *
47936014 ACAGCGAATCTTAC-TCCAAAATATTACAATTAAAA
65 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * ** * * * *
47936049 AAATTGAAGCCACAATGGCAAATCTTACTTCTTTGTCGGTACAGTGGAGCAGATTGAAGCTATAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * **
47936114 TGGTGAATCTTGCTTCCCCGATATTTTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * *
47936149 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTAGAACAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * *
47936214 CGGGGAATCATGTTTCCCCAATATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47936249 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTAGCGGTGCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
47936314 CGGTGAATCTGGCTCCCCCGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
47936349 AGTTTGATGCCACAACGGCGAATCTTACTTCTCTGGCGATGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** **
47936414 TGGTGAATCTTATTTCCCTAACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * *
47936449 AGATTGAAGCCACAATGGTGAATCTTCCTGCTCTGGCAGTGCAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** *
47936514 CAATGAATCTTGC-TCCACGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * * *
47936548 AGATTAAAGTCACAACGGTGAATCTTACTTCACTAGTGGTGTAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** *
47936613 CGGTGAATCTTATTTCCCCGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
47936648 AGATTGAAGCCATAATGGTGAATCTTACTTCCCTGG-GAGTGTAATGGAACAAATTGAAGCTACA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCG-GTGCAGTGGAACAGATTGAAGCTACA
* * ** * *
47936712 ACGGCGAATCTTGC-ACCCTAAACATTGTAATTCAAA
65 ACGGTGAATCTTGCTTCCC-CGACATTGCAATTAAAA
* * * * * *
47936748 AGATTGAAG-TACAACGGTGAATCTTACTTCCCTGGTGGCGCAGTGGAACAGATTCAAGCTGCAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** ** * *
47936812 TAGTGAATCTTATTTCCCAGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* ** * * * *
47936847 ATATTGAAGCCACAACGGCGAATCTTACTTTTCTAGCGGTGCAGTGGAGCAAATTGAAGCCACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * **
47936912 CGGCGAATCTGGCTCCCCCGACATTATAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
*
47936947 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * *
47937012 CGATAAACCTTGTTTCCCTGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
47937047 AGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTACAGTGAAACAAATTGAAGCAACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** *
47937112 TGGTGAATCAAGTTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47937147 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGTGGTGCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * *
47937212 CATTGAATCTGGCTCCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
47937247 AGTTTGCAGCCACAACAGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAACTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * ** *
47937312 CGGTGAATCTTATTTCTCTAACATTCCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
47937347 AGATCGAAGCCATAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * * * *
47937412 TAGCGAATCTTAC-TCCACGACATTGCAGTTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47937446 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAATCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
47937511 CGATGAATCTTGTTTCTCGGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
47937546 ATATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
*** *
47937611 CGGTGAATCTTG-TATCCAAAACATTGTAATTAAAA
66 CGGTGAATCTTGCT-TCCCCGACATTGCAATTAAAA
* * * * * * * *
47937646 AGATTGAAGCTACAATGGAGAATCTTAGTTCCCTAGCGGCGCAGTGGAATAGATTCAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** *
47937711 CGGTGAATCTTATTTCCCCGACACTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* ** ** * ** *
47937746 AGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATACAGTGGAGTAGATTGAATCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
47937811 CGGCGAATCTGGCTCCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * *
47937846 AGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
47937911 TGGTGAATCTTGTTTCCCCGATATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47937946 AGATT-AAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGCACAAATTGAAGCTACA
1 AGATTGAA-GCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACA
* * * * * *
47938010 ACAGCGAATCTTGC-TCCACAATATTGTAATTAAAA
65 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
47938045 AGATTGAAGCCACAACGGCAAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAAGTTATAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
47938110 TGGTGAATCTTGCTTCCCCGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * *
47938145 AGATTGAAGCCACAACAGCGAATCTTACTTCTCTGGCGGTGCAGTAGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * *
47938210 TGGGGAATCATGTTTCCCCGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * *
47938245 AGATTGAAGCCACAGCAGTGAATCTTACTTCTCTAGCGGTGCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
47938310 CGGTGAATCTGGCTCCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * *
47938345 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGAGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
47938410 TGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47938445 AGATT-AAGGCCACAATGGCAAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACA
1 AGATTGAA-GCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACA
* * * *
47938509 ACAGCGAATCTTGC-TCCACAACATTGCAATTAAAA
65 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * *
47938544 AGATTGAAGCCACAACGACAAATCTTACTTCCCTGTCGGTACTGTGGAGCAGATTGAAGCTATAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
47938609 TGGTGAATCTTGGTTCCCCGACATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47938644 AGATTGATGCCACAACAGCGAATCTTACTTCGCTGGCGGTGCAGTAGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
47938709 TGGTGAATCGTGTTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
47938744 AGATTGAAGCCACAACAGC-AATCTTACTTCCTTGGCGGTCCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
*
47938808 CGGTGAATCTAGC-TCTCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTC-CCCGACATTGCAATTAAAA
* * * * * *
47938843 AGTTTGAAGCCACAACAGCAAATCGTACTTCCCTGGCGATGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** **
47938908 CGGTGAATCTTATTTCCCTAACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
** * * *
47938943 AGATTGAAGCCACAATAGAGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * *
47939008 CAATGAATCTTGC-TCCACGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* ** * * * *
47939042 AGATTAAAGTTACAACGGCGAATCTTACTTCCCTAGTGGTGTAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
**
47939107 CGGTGAATCTTATTTCCCCGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * ** * *
47939142 AGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGTAGTGTAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * ** * *
47939207 CAGCGAATCTTGC-ACCCTAAATATTGTAATTAAAA
66 CGGTGAATCTTGCTTCCC-CGACATTGCAATTAAAA
* ** * *
47939242 AGATTGAAGCTACAACGGTAAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** ** *
47939307 TAGTGAATCTTATTTCCCCGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* ** * *
47939342 ATATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * *
47939407 TGGCGAATCTGGCTCCCCCGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * *
47939442 AGATTGAAGCCACAACGGTGAATCTTATTTCCCTGGAGGTGCAGTGGAACAGGTTAAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
47939507 CGGTAAACCTTGTTTCCCTGACATTGCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * *
47939542 AGATT-AATGCCACAATGGTGAATCTTATTTCCCTGGCTGTGCAGTGAAACAAATTGAAGCTAGA
1 AGATTGAA-GCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACA
* *
47939606 ACGGTGAATCTTGC-TCCACAACATTGCAATTAAAA
65 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * **
47939641 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGTCGGTACAGCGGAGTAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * **
47939706 CGCTGAATCTTGCTTCCCCGATATTATAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
** *
47939741 AGATTGAAGCCACAACAACGAATCTTACTTCTCC-GGCGGTGCAGTGGAATAGATTGAAGCTACA
1 AGATTGAAGCCACAACGGCGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCTACA
* *
47939805 ACGGTGAATCTTGTTTCCCCGACATTGCAATGAAAA
65 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
47939841 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGAGATGCAATAATAGAGCAGATTGAAGCTA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC---AGTGGAACAGATTGAAGCTA
* * * *
47939906 CAACGGTGACTCTGGCTCCCCCGACATTGTAATTAAAA
63 CAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * *
47939944 TG-TATGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGAAACAGATTGAAGCTACA
1 AGAT-TGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACA
** ** *
47940008 ACGGTGAATCTTATTTCCCTAACATTGTAATTAAAA
65 ACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
47940044 AAATTGAAGCCATAATGGAGAATCTTACTTCTCTGGCGGTGCGGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** * * *
47940109 CAGCAAATCTTGC-TGCCTGACATTACAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * * * **
47940143 AGATTAAAG-TACAACAGCGAATCTTACTTCCCTAGCGGTGTAGTAGAGCAGGCTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * *
47940207 TGGTGAATCTTGTTTCCCCGACATTTCAATTAAAA
66 CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
* * * * * *
47940242 AGATTGAAGCCACAATGGCGAATCATAATTCCCTAGCGGTGTAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* *
47940307 CGGCGAATCTTACTTCCC
66 CGGTGAATCTTGCTTCCC
47940325 TGGCGGCGCA
Statistics
Matches: 4881, Mismatches: 948, Indels: 86
0.83 0.16 0.01
Matches are distributed among these distances:
98 52 0.01
99 1030 0.21
100 3704 0.76
101 12 0.00
102 1 0.00
103 82 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (100 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
CGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
Found at i:47935094 original size:399 final size:398
Alignment explanation
Indices: 47934353--47940316 Score: 6364
Period size: 399 Copynumber: 14.9 Consensus size: 398
47934343 ATAGTGGAAT
* * * * * *
47934353 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGACAGTGTAGTGGAACATATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * ** * * * ** *
47934418 CAGCGAATCTTACTTCCTCGACATTGTAATTAAAAAGATTGAAATCACAACGGCGAATCTTACTT
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT
* * * * ** ** *
47934483 TCCTTGCGGTACAGTGGACCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCAAACATTGTAAT
131 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TCCCCGACATTGCAAT
** * ** * **
47934548 TAAAAAGATTGAAGGTACAACAGCGAATCTTACTTCCCTGGCGGCACAGTGAAACAGATACAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
** * * *
47934613 -ACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCA
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCT
* * *
47934677 TACTTCCCTAGTGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCTCCCGACATT
325 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGG-TCTCCCGACATT
47934742 GCAATTAAAA
389 GCAATTAAAA
* * *
47934752 AGATTGAAGCCACAACGGCGAATCTTACTTCTCTGGCGGTACAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* *
47934817 CGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTT
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT
* * ** * * * *
47934882 CCCTGGCGGTGCCGTGGAACAAATTGAAGCTACAATAGCGAATCTTGCTCCACAACATTGCAAAT
131 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCCCCGACATTGCAATT
* * * ** *
47934947 AAAAAGATTGAAGCCACAACGGTGAACCTTACTTCCCTGTCGGTATAGTGGAGCAGATTGAAGCT
196 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
** * * * *
47935012 ACAATAGTGAATCTTGCTTCCCCGATATTGTAATTAAAAAGATTGAAGCCACAACAGTGAATCTT
261 ACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTT
* * * * *
47935077 ACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAACGGTAAAT-TATGTTTCCCCGACATT
326 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCT-GGTCT-CCCGACATT
47935141 GCAATTAAAA
389 GCAATTAAAA
* * * * *
47935151 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCGACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * * * * *
47935216 CGGTGAATCTGGCTCCCCCGACATTGCAATGAGAAAGTTTGAAGCCACAACGGCGAATCTTACTT
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT
* ** ** *
47935281 CCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAAC
131 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GCTCCCCGACATTGCAAT
** * * * *
47935346 TAAAAAGATTGAAGCCACAATAGTGAATCTTACTTCTCTGGCGGTACAGTGGAATAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * * * *
47935411 TACAACAGCGAATCTTAC-TCCACGACATTGTAGTTAAAAAGATTGAAGCCACAACGACGAATCT
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCT
* * * * * * *
47935475 TACTTCCCTGGCGGTGTAGGGGAGCAGATTGAAGCTACAACGATGAATCTTGTTTCTCGGACATT
325 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGGTCTC-CCGACATT
47935540 GCAATTAAAA
389 GCAATTAAAA
* * *
47935550 AGATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* ** ** * * * *
47935615 CGGCGAATCTTGCATCCAAAATATTGTAATTAAAAAGATTGAAGCTACAATGG-AGAATCTTACT
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCA-AATCTTACT
* * * * ** * *
47935679 TCCCTAGCGGAGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTTCCCCGACACTGTAA
130 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GCTCCCCGACATTGCAA
* ** ** * ** *
47935744 TTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGCAATGGAGTAGATTGAAT
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* ** *
47935809 CTACAACGGCGAATCAGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
* * * * * *
47935874 TTACTTCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAATGGGGAATCTTGTTTCCCCGACAT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGGTCT-CCCGACAT
47935939 TGCAATTAAAA
388 TGCAATTAAAA
* * * *
47935950 AGATT-AAGGCCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGGCACAAATTGAAGCTACA
1 AGATTGAA-GCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACA
* * ** ** * * * *
47936014 ACAGCGAATCTT-ACTCCAAAATATTACAATTAAAAAAATTGAAGCCACAATGGCAAATCTTACT
65 ACGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACT
** * * * * * * **
47936078 TCTTTGTCGGTACAGTGGAGCAGATTGAAGCTATAATGGTGAATCTTGCTTCCCCGATATTTTAA
130 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TCCCCGACATTGCAA
* *
47936143 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTAGAACAGATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * * * *
47936208 CCACAACGGGGAATCATGTTTCCCCAATATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATC
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
* * * *
47936273 TTACTTCCCTAGCGGTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACAT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGG-TCTCCCGACAT
*
47936338 TACAATTAAAA
388 TGCAATTAAAA
* * * *
47936349 AGTTTGATGCCACAACGGCGAATCTTACTTCTCTGGCGATGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * ** * *
47936414 TGGTGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTCCTG
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT
* * * ** *
47936479 CTCTGGCAGTGCAGTGGAATAGATTGAAGCTACAACAATGAATCTTGCTCCACGACATTGCAATT
131 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCCCCGACATTGCAATT
* * * * * * * *
47936544 AAAAAGATTAAAGTCACAACGGTGAATCTTACTTCACTAGTGGTGTAGTGGAGCAGATTGAAGCT
196 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
** * * * *
47936609 ACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCATAATGGTGAATCTT
261 ACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTT
* * * * * * *
47936674 ACTTCCCTGG-GAGTGTAATGGAACAAATTGAAGCTACAACGGCGAATCTTG-CACCCTAAACAT
326 ACTTCCCTGGCG-GTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGGTCTCCC--GACAT
* *
47936737 TGTAATTCAAA
388 TGCAATTAAAA
* * * * * * *
47936748 AGATTGAAG-TACAACGGTGAATCTTACTTCCCTGGTGGCGCAGTGGAACAGATTCAAGCTGCAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
** * * * *
47936812 TAGTGAATCTTATTT-CCCAGACATTGTAATTAAAAATATTGAAGCCACAACGGCGAATCTTACT
66 CGGTGAATCTTGTTTCCCCA-ACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACT
** * * * * * * **
47936876 TTTCTAGCGGTGCAGTGGAGCAAATTGAAGCCACAACGGCGAATCTGGCTCCCCCGACATTATAA
130 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT-CCCCGACATTGCAA
*
47936941 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * * *
47937006 CTACAACGATAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATC
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
* * * * * ** *
47937071 TTACTTCCCTGGCGGTACAGTGAAACAAATTGAAGCAACAATGGTGAATCAAGTTTCCCCGACAT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGGTCT-CCCGACAT
47937136 TGCAATTAAAA
388 TGCAATTAAAA
* * * * *
47937147 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGTGGTGCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
** * * * * * * * *
47937212 CATTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGCAGCCACAACAGCGAATCTTACTT
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT
* * ** * ** *
47937277 CCCTGGCAGTGCAGTGGAACAGATTGAAACTACAACGGTGAATCTTATTTCTCTAACATTCCAAT
131 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GCTCCCCGACATTGCAAT
* * * * *
47937342 TAAAAAGATCGAAGCCATAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
** * * * * *
47937407 TACAATAGCGAATCTTAC-TCCACGACATTGCAGTTAAAAAGATTGAAGCCACAACGACGAATCT
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCT
* * * * * * *
47937471 TACTTCCCTGGCGGTGTAGTGGAGCAGATTGAATCTACAACGATGAATCTTGTTTCTCGGACATT
325 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGGTCTC-CCGACATT
47937536 GCAATTAAAA
389 GCAATTAAAA
* * * *
47937546 ATATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* ** * * * *
47937611 CGGTGAATCTTGTATCCAAAACATTGTAATTAAAAAGATTGAAGCTACAATGG-AGAATCTTAGT
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCA-AATCTTACT
* * * * ** *
47937675 TCCCTAGCGGCGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTTCCCCGACACTGCAA
130 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GCTCCCCGACATTGCAA
* ** ** * ** *
47937740 TTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATACAGTGGAGTAGATTGAAT
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * *
47937805 CTACAACGGCGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTAAAGCCACAACGGTGAATC
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
* * * * *
47937870 TTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGAATCTTGTTTCCCCGATAT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGGTCT-CCCGACAT
47937935 TGCAATTAAAA
388 TGCAATTAAAA
* * *
47937946 AGATT-AAGGCCACAATGGCGAATCTTACTTCCCTGGCAGTGCAGTGGCACAAATTGAAGCTACA
1 AGATTGAA-GCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACA
* * * * * *
47938010 ACAGCGAATCTTG-CTCCACAATATTGTAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACT
65 ACGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACT
* * * * * * *
47938074 TCCCTGTCGGTACAGTGGAGCAGATTGAAGTTATAATGGTGAATCTTGCTTCCCCGACATTGTAA
130 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TCCCCGACATTGCAA
* * *
47938139 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCTCTGGCGGTGCAGTAGAACAGATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * * * * *
47938204 CTACAATGGGGAATCATGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAGCAGTGAATC
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
* * * * *
47938269 TTACTTCTCTAGCGGTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACAT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGG-TCTCCCGACAT
47938334 TGCAATTAAAA
388 TGCAATTAAAA
* * **
47938345 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGAGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * *
47938410 TGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATT-AAGGCCACAATGGCAAATCTTACT
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAA-GCCACAACGGCAAATCTTACT
* * * * * *
47938474 TCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAACAGCGAATCTTGCTCCACAACATTGCAAT
130 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCCCCGACATTGCAAT
* * * * * *
47938539 TAAAAAGATTGAAGCCACAACGACAAATCTTACTTCCCTGTCGGTACTGTGGAGCAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * * *
47938604 TATAATGGTGAATCTTGGTTCCCCGACATTGTAATTAAAAAGATTGATGCCACAACAGCGAATCT
260 TACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCT
* * * *
47938669 TACTTCGCTGGCGGTGCAGTAGAACAGATTGAAGCTACAATGGTGAATC-GTGTTTCCCCGACAT
325 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTG-GTCT-CCCGACAT
47938733 TGCAATTAAAA
388 TGCAATTAAAA
* * * * * *
47938744 AGATTGAAGCCACAACAGC-AATCTTACTTCCTTGGCGGTCCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * * *
47938808 CGGTGAATCTAG-CTCTCCCGACATTGCAATTAAAAAGTTTGAAGCCACAACAGCAAATCGTACT
66 CGGTGAATCTTGTTTC-CCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACT
* * ** **
47938872 TCCCTGGCGATGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAA
130 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GCTCCCCGACATTGCAA
** * * *
47938937 TTAAAAAGATTGAAGCCACAATAGAGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
** * * * **
47939002 CTACAACAATGAATCTTGC-TCCACGACATTACAATTAAAAAGATTAAAGTTACAACGGCGAATC
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
* * * * ** *
47939066 TTACTTCCCTAGTGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACAT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGGTCT-CCCGACAT
47939131 TGCAATTAAAA
388 TGCAATTAAAA
* * ** *
47939142 AGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGTAGTGTAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * ** * * * * *
47939207 CAGCGAATCTTG-CACCCTAAATATTGTAATTAAAAAGATTGAAGCTACAACGGTAAATCTTACT
66 CGGTGAATCTTGTTTCCC-CAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACT
* * ** ** *
47939271 TCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAATAGTGAATCTTATTTCCCCGACATTACAA
130 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GCTCCCCGACATTGCAA
* ** * *
47939336 TTAAAAATATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * * *
47939401 CTACAATGGCGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAGCCACAACGGTGAATC
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
* * * * * * * *
47939466 TTATTTCCCTGGAGGTGCAGTGGAACAGGTTAAAGCTACAACGGTAAACCTTGTTTCCCTGACAT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGGTCTCCC-GACAT
47939531 TGCAATTAAAA
388 TGCAATTAAAA
* * * * * *
47939542 AGATT-AATGCCACAATGGTGAATCTTATTTCCCTGGCTGTGCAGTGAAACAAATTGAAGCTAGA
1 AGATTGAA-GCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACA
* * **
47939606 ACGGTGAATCTTG-CTCCACAACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACT
65 ACGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACT
* * * ** * * **
47939670 TCCCTGTCGGTACAGCGGAGTAGATTGAAGCTACAACGCTGAATCTTGCTTCCCCGATATTATAA
130 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TCCCCGACATTGCAA
** *
47939735 TTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCTCC-GGCGGTGCAGTGGAATAGATTGAA
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAA
* * *
47939799 GCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATGAAAAAGATTGAAGCCACAACAGCGAAT
258 GCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
* * * * * * *
47939864 CTTACTTCCCTGGAGATGCAATAATAGAGCAGATTGAAGCTACAACGGTGACTCTGGCTCCCCCG
323 CTTACTTCCCTGGCGGTGC---AGTGGAACAGATTGAAGCTACAACGGTGAATCTGG-TCTCCCG
*
47939929 ACATTGTAATTAAAA
384 ACATTGCAATTAAAA
* * * * *
47939944 TG-TATGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGAAACAGATTGAAGCTACA
1 AGAT-TGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACA
* * * * * *
47940008 ACGGTGAATCTTATTTCCCTAACATTGTAATTAAAAAAATTGAAGCCATAATGG-AGAATCTTAC
65 ACGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCA-AATCTTAC
* * * ** * * *
47940072 TTCTCTGGCGGTGCGGTGGAACAGATTGAAGCTACAACAGCAAATCTTGCTGCCTGACATTACAA
129 TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCCCCGACATTGCAA
* * * * * * * **
47940137 TTAAAAAGATTAAAG-TACAACAGCGAATCTTACTTCCCTAGCGGTGTAGTAGAGCAGGCTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * *
47940201 CTACAATGGTGAATCTTGTTTCCCCGACATTTCAATTAAAAAGATTGAAGCCACAATGGCGAATC
259 CTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATC
* * * * * *
47940266 ATAATTCCCTAGCGGTGTAGTGGAACAAATTGAAGCTACAACGGCGAATCT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCT
47940317 TACTTCCCTG
Statistics
Matches: 4672, Mismatches: 834, Indels: 119
0.83 0.15 0.02
Matches are distributed among these distances:
397 9 0.00
398 491 0.11
399 2851 0.61
400 986 0.21
401 119 0.03
402 130 0.03
403 86 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (398 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT
CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCCCCGACATTGCAATT
AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
ACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTT
ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTGGTCTCCCGACATTGC
AATTAAAA
Found at i:47935298 original size:499 final size:499
Alignment explanation
Indices: 47934353--47940317 Score: 6606
Period size: 499 Copynumber: 12.0 Consensus size: 499
47934343 ATAGTGGAAT
* * * * * *
47934353 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGACAGTGTAGTGGAACATATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * * * **
47934418 CAGCGAATCTTACTTCCTCGACATTGTAATTAAAAAGATTGAAATCACAACGGCGAATCTTACTT
66 TGGCGAATCTTGC-TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * ** ** *
47934483 TCCTTGCGGTACAGTGGACCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCAAACATTGTAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAAT
** * * ** * **
47934548 TAAAAAGATTGAAGGTACAACAGCGAATCTTACTTCCCTGGCGGCACAGTGAAACAGATACAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGC
* * *
47934613 -ACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCA
260 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCT
* * * *
47934677 TACTTCCCTAGTGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTGGC-TCTCCCGACAT
325 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCCGACAT
* *
47934741 TGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCTGGCGGTACAGTGGAACAGAT
389 TGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGAT
47934806 TGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
454 TGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
* * * *
47934852 AGATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCCGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * * *
47934917 TAGCGAATCTTGCTCCACAACATTGCAAATAAAAAGATTGAAGCCACAACGGTGAACCTTACTTC
66 TGGCGAATCTTGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC
* ** * * * *
47934982 CCTGTCGGTATAGTGGAGCAGATTGAAGCTACAATAGTGAATCTTGCTTCCCCGATATTGTAATT
131 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAATT
* * *
47935047 AAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCA
196 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCT
*
47935112 ACAACGGTAAAT-TATGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCT
261 ACAACGGTGAATCT-TGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCT
* * * * *
47935176 TACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCGACAACGGTGAATCTGGCTCCCCCGACATT
325 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATT
* * * *
47935241 GCAATGAGAAAGTTTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATT
390 GCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATT
* ** *
47935306 GAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAACTAAAA
455 GAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
** * * * *
47935351 AGATTGAAGCCACAATAGTGAATCTTACTTCTCTGGCGGTACAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
** * * * * *
47935416 CAGCGAATCTTACTCCACGACATTGTAGTTAAAAAGATTGAAGCCACAACGACGAATCTTACTTC
66 TGGCGAATCTTGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC
* * * * * *
47935481 CCTGGCGGTGTAGGGGAGCAGATTGAAGCTACAAC-GATGAATCTTGTTTCTCGGACATTGCAAT
131 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAG-TGAATCTTGCTTCCCCGACATTGCAAT
* * *
47935545 TAAAAAGATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGC
* ** *** * * * ** *
47935610 TACAACGGCGAATCTTGCATCCAAAATATTGTAATTAAAAAGATTGAAGCTACAATGGAGAATCT
260 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCT
* * * * ** *
47935675 TACTTCCCTAGCGGAGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTTCCCCGACACT
325 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATT
* * ** ** * **
47935740 GTAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGCAATGGAGTAGATT
390 GCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATT
* * ** * *
47935805 GAATCTACAACGGCGAATCAGGCTCCCCCGACATTGCAATTAAAA
455 GAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
* *
47935850 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
47935915 TGGGGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATT-AAGGCCACAATGGTGAATCTTACT
66 TGGCGAATCTTG-CTCCCCGACATTGCAATTAAAAAGATTGAA-GCCACAACGGCGAATCTTACT
* * * * * *** * *
47935979 TCCCTGGCAGTGCAGTGGCACAAATTGAAGCTACAACAGCGAATCTTAC-TCCAAAATATTACAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAA
* * * * * * *
47936043 TTAAAAAAATTGAAGCCACAATGGCAAATCTTACTT-CTTTGTCGGTACAGTGGAGCAGATTGAA
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAG-CGGTGCAGTGGAACAGATTGAA
* * * * **
47936107 GCTATAATGGTGAATCTTGCTTCCCCGATATTTTAATTAAAAAGATTGAAGCCACAACAGCGAAT
258 GCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAAT
* * * * * * *
47936172 CTTACTTCCCTGGCGGTGCAGTAGAACAGATTGAAGCCACAACGGGGAATCATGTTTCCCCAATA
323 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * *
47936237 TTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTAGCGGTGCAATGGAGCAGA
388 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* * * *
47936302 TTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTACAATTAAAA
453 TTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
* * * * *
47936349 AGTTTGATGCCACAACGGCGAATCTTACTTCTCTGGCGATGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* ** ** * * * *
47936414 TGGTGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTCCTG
66 TGGCGAATCTT-GCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * *
47936479 CTCTGGCAGTGCAGTGGAATAGATTGAAGCTACAACAATGAATCTTGC-TCCACGACATTGCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAAT
* * * * * * *
47936543 TAAAAAGATTAAAGTCACAACGGTGAATCTTACTTCACTAGTGGTGTAGTGGAGCAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGC
* * * ** *
47936608 TACAACGGTGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCATAATGGTGAATCT
260 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCT
* * * * * **
47936673 TACTTCCCTGG-GAGTGTAATGGAACAAATTGAAGCTACAACGGCGAATCTTGC-ACCCTAAACA
325 TACTTCCCTGGCG-GTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCC-CGACA
* * * * * *
47936736 TTGTAATTCAAAAGATTGAAG-TACAACGGTGAATCTTACTTCCCTGGTGGCGCAGTGGAACAGA
388 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* * ** * * *
47936800 TTCAAGCTGCAATAGTGAATCTTATTTCCCAGACATTGTAATTAAAA
453 TTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
* ** * * * *
47936847 ATATTGAAGCCACAACGGCGAATCTTACTTTTCTAGCGGTGCAGTGGAGCAAATTGAAGCCACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * **
47936912 CGGCGAATCTGGCTCCCCCGACATTATAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
66 TGGCGAATCTTGCT-CCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * *
47936977 CCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAAC-GATAAACCTTGTTTCCCTGACATTGCAA
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAG-TGAATCTTGCTTCCCCGACATTGCAA
* * * * *
47937041 TTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTACAGTGAAACAAATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAG
* * **
47937106 CAACAATGGTGAATCAAGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATC
259 CTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATC
* * * ** * *
47937171 TTACTTCCCTGGTGGTGCAATGGAGCAGATTGAAGCTACAACATTGAATCTGGCTCCCCCGACAT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACAT
* * * *
47937236 TGCAATTAAAAAGTTTGCAGCCACAACAGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGAT
389 TGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGAT
* * * ** *
47937301 TGAAACTACAACGGTGAATCTTATTTCTCTAACATTCCAATTAAAA
454 TGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
* * * * *
47937347 AGATCGAAGCCATAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * * *
47937412 TAGCGAATCTTACTCCACGACATTGCAGTTAAAAAGATTGAAGCCACAACGACGAATCTTACTTC
66 TGGCGAATCTTGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC
* * * * * *
47937477 CCTGGCGGTGTAGTGGAGCAGATTGAATCTACAAC-GATGAATCTTGTTTCTCGGACATTGCAAT
131 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAG-TGAATCTTGCTTCCCCGACATTGCAAT
* * * *
47937541 TAAAAATATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGC
* *** * * ** *
47937606 TACAACGGTGAATCTTGTATCCAAAACATTGTAATTAAAAAGATTGAAGCTACAATGGAGAATCT
260 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCT
* * * * * ** *
47937671 TAGTTCCCTAGCGGCGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTTCCCCGACACT
325 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATT
* ** ** * **
47937736 GCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATACAGTGGAGTAGATT
390 GCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATT
* * * * *
47937801 GAATCTACAACGGCGAATCTGGCTCCCCCGACATTGCAATTAAAA
455 GAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
* * *
47937846 AGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
47937911 TGGTGAATCTTGTTTCCCCGATATTGCAATTAAAAAGATT-AAGGCCACAATGGCGAATCTTACT
66 TGGCGAATCTTG-CTCCCCGACATTGCAATTAAAAAGATTGAA-GCCACAACGGCGAATCTTACT
* * * * * * * *
47937975 TCCCTGGCAGTGCAGTGGCACAAATTGAAGCTACAACAGCGAATCTTGC-TCCACAATATTGTAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAA
* * *
47938039 TTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCT-GTCGGTACAGTGGAGCAGATTGAA
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAG-CGGTGCAGTGGAACAGATTGAA
* * * * *
47938103 GTTATAATGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAAT
258 GCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAAT
* * * * * *
47938168 CTTACTTCTCTGGCGGTGCAGTAGAACAGATTGAAGCTACAATGGGGAATCATGTTTCCCCGACA
323 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * * * * * *
47938233 TTGTAATTAAAAAGATTGAAGCCACAGCAGTGAATCTTACTTCTCTAGCGGTGCAATGGAGCAGA
388 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* * *
47938298 TTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAA
453 TTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
* * *
47938345 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGAGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
47938410 TGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATT-AAGGCCACAATGGCAAATCTTACT
66 TGGCGAATCTTG-CTCCCCGACATTGCAATTAAAAAGATTGAA-GCCACAACGGCGAATCTTACT
* * * * *
47938474 TCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAACAGCGAATCTTGC-TCCACAACATTGCAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAA
* * * * *
47938538 TTAAAAAGATTGAAGCCACAACGACAAATCTTACTTCCCT-GTCGGTACTGTGGAGCAGATTGAA
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAG-CGGTGCAGTGGAACAGATTGAA
* * * * *
47938602 GCTATAATGGTGAATCTTGGTTCCCCGACATTGTAATTAAAAAGATTGATGCCACAACAGCGAAT
258 GCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAAT
* * * * *
47938667 CTTACTTCGCTGGCGGTGCAGTAGAACAGATTGAAGCTACAATGGTGAATCGTGTTTCCCCGACA
323 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * * * *
47938732 TTGCAATTAAAAAGATTGAAGCCACAACAGC-AATCTTACTTCCTTGGCGGTCCAATGGAGCAGA
388 TTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* *
47938796 TTGAAGCTACAACGGTGAATCTAG-CTCTCCCGACATTGCAATTAAAA
453 TTGAAGCTACAACGGTGAATCTTGTTTC-CCCGACATTGCAATTAAAA
* * * * * *
47938843 AGTTTGAAGCCACAACAGCAAATCGTACTTCCCTGGCGATGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * ** ** ** *
47938908 CGGTGAATCTTATTTCCCTAACATTGCAATTAAAAAGATTGAAGCCACAATAGAGAATCTTACTT
66 TGGCGAATCTT-GCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * *
47938973 CTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACAATGAATCTTGC-TCCACGACATTACAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAAT
* ** * * *
47939037 TAAAAAGATTAAAGTTACAACGGCGAATCTTACTTCCCTAGTGGTGTAGTGGAGCAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGC
* ** *
47939102 TACAACGGTGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCT
260 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCT
** * * * * * ** *
47939167 TACTTCCCTGGTAGTGTAGTGGAACAAATTGAAGCTACAACAGCGAATCTTGC-ACCCTAAATAT
325 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCC-CGACAT
* * ** *
47939231 TGTAATTAAAAAGATTGAAGCTACAACGGTAAATCTTACTTCCCTGGCGGCGCAGTGGAACAGAT
389 TGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGAT
* ** * *
47939296 TCAAGCTACAATAGTGAATCTTATTTCCCCGACATTACAATTAAAA
454 TGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
* ** * *
47939342 ATATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
* * * *
47939407 TGGCGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTATTT
66 TGGCGAATCTTGCT-CCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * * *
47939472 CCCTGGAGGTGCAGTGGAACAGGTTAAAGCTACAACGGTAAACCTTGTTTCCCTGACATTGCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAAT
* * * * * * *
47939537 TAAAAAGATT-AATGCCACAATGGTGAATCTTATTTCCCTGGCTGTGCAGTGAAACAAATTGAAG
195 TAAAAAGATTGAA-GCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAG
* * * * * *
47939601 CTAGAACGGTGAATCTTG-CTCCACAACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
259 CTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATC
* * * ** * *
47939665 TTACTTCCCTGTCGGTACAGCGGAGTAGATTGAAGCTACAACGCTGAATCTTGCTTCCCCGATAT
324 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACAT
** ** *
47939730 TATAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCTCC-GGCGGTGCAGTGGAATAGA
389 TGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGA
*
47939794 TTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATGAAAA
453 TTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
* * * * * *
47939841 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGAGATGCAATAATAGAGCAGATTGAAGCTA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGC---AGTGGAACAGATTGAAGCTA
* * * * * * *
47939906 CAACGGTGACTCTGGCTCCCCCGACATTGTAATTAAAATG-TATGAAGCCACAACGGTGAATCTT
63 CAATGGCGAATCTTGCT-CCCCGACATTGCAATTAAAAAGAT-TGAAGCCACAACGGCGAATCTT
* * * ** **
47939970 ACTTCCCTAGCGGTGCAGTGAAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTG
126 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTG
* * * * * * * *
47940035 TAATTAAAAAAATTGAAGCCATAATGGAGAATCTTACTTCTCTGGCGGTGCGGTGGAACAGATTG
191 CAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTG
* ** * * * * * *
47940100 AAGCTACAACAGCAAATCTTG-CTGCCTGACATTACAATTAAAAAGATTAAAG-TACAACAGCGA
256 AAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGA
* * * * ** * *
47940163 ATCTTACTTCCCTAGCGGTGTAGTAGAGCAGGCTGAAGCTACAATGGTGAATCTTGTTTCCCCGA
321 ATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGA
* * * * * *
47940228 CATTTCAATTAAAAAGATTGAAGCCACAATGGCGAATCATAATTCCCTAGCGGTGTAGTGGAACA
386 CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACA
* *
47940293 AATTGAAGCTACAACGGCGAATCTT
451 GATTGAAGCTACAACGGTGAATCTT
47940318 ACTTCCCTGG
Statistics
Matches: 4636, Mismatches: 788, Indels: 82
0.84 0.14 0.01
Matches are distributed among these distances:
497 5 0.00
498 798 0.17
499 3074 0.66
500 396 0.09
501 138 0.03
502 223 0.05
503 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (499 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
TGGCGAATCTTGCTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC
CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTGCAATT
AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCT
ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTT
ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTG
CAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
AAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAA
Found at i:47940815 original size:448 final size:448
Alignment explanation
Indices: 47939924--47940816 Score: 1058
Period size: 448 Copynumber: 2.0 Consensus size: 448
47939914 ACTCTGGCTC
* **
47939924 CCCCGACATTGTAATTAAAATGTATGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGT
1 CCCCGACATTGTAATTAAAAAGTATGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGCAGT
** * * * *
47939989 GAAACAGATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGTAATTAAAAAAATTGAAGC
66 GAAACAGATTGAAGCTACAACGGCAAATCTTACTCCCCCAACATTGCAATTAAAAAAATTGAAGC
* * * *
47940054 CATAATGGAGAATCTTACTTCTCTGGCGGTGCGGTGGAACAGATTGAAGCTACAACAGCAAATCT
131 CACAACGGAGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCAAATCT
* * *
47940119 TGCTGCCTGACATTACAATTAAAAAGATTAAAGTACAACAGCGAATCTTACTTCCCTAGCGGTGT
196 TGCTGCCCGACATTACAATTAAAAAGATTAAAGCACAACAGCGAATCTTACTTCCCTAGCGGTGC
** ** * * *
47940184 AGTAGAGCAGGCTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTTCAATTAAAAAGATTGA
261 AGTAGAAAAAACTGAAGCTACAACGGTGAATCTTGTCTCCACGACATTTCAATTAAAAAGATTGA
** * * * *
47940249 AGCCACAATGGCGAATCATAATTCCCTAGCGGTGTAGTGGAACAAATTGAAGCTACAACGGCGAA
326 AGCCACAATGGCGAATCATAATTCCCTAGCGGTACAGTGGAACAAATTGAAACCACAACGACAAA
* * * * * * * ** *
47940314 TCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAATGGTGAATCTTATTT
391 TCTTACTTCCCCGACAGCGCAATGAAAAAGATTCAAGCCACAACAGCGAATCTTATTT
*
47940372 CCCCGACATTGTAATTAAAAAG-ATTGAAGCCACAACGACGAATCTTCCTTCCCTAGCGGTGCAG
1 CCCCGACATTGTAATTAAAAAGTA-TGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGCAG
* ** * * *
47940436 TGGAGTAGATTGAAGCTACAACGGCAAATC-TAGCTCCCCCGACATTGCAATTAATAAGATTGAA
65 TGAAACAGATTGAAGCTACAACGGCAAATCTTA-CTCCCCCAACATTGCAATTAAAAAAATTGAA
* * * ** **
47940500 GCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAATATG-TTGAAGCTACAATGGTGAA
129 GCCACAACGGAGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAAGCTACAACAGCAAA
* * * **
47940564 TCTTGTTTCCCGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCG
193 TCTTGCTGCCCGACATTACAATTAAAAAGATTAAAG-CACAACAGCGAATCTTACTTCCCTAGCG
* * *
47940629 GTGCAGTGGAAAAAATTGAAGCTACAACGGTGAATCTTG-CTCTACGACATTGT-AATTAAAAAG
257 GTGCAGTAGAAAAAACTGAAGCTACAACGGTGAATCTTGTCTCCACGACATT-TCAATTAAAAAG
* * * * *
47940692 ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAACCACAACG
321 ATTGAAGCCACAATGGCGAATCATAATTCCCTAGCGGTACAGTGGAACAAATTGAAACCACAACG
* ** * * *
47940757 ACAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTA
386 ACAAATCTTACTTCCCCGACAGCGCAATGAAAAAGATTCAAGCCACAACAGCGAATCTTA
47940817 CTCTCCTGGC
Statistics
Matches: 368, Mismatches: 72, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
447 3 0.01
448 307 0.83
449 58 0.16
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (448 bp):
CCCCGACATTGTAATTAAAAAGTATGAAGCCACAACGACGAATCTTACTTCCCTAGCGGTGCAGT
GAAACAGATTGAAGCTACAACGGCAAATCTTACTCCCCCAACATTGCAATTAAAAAAATTGAAGC
CACAACGGAGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCAAATCT
TGCTGCCCGACATTACAATTAAAAAGATTAAAGCACAACAGCGAATCTTACTTCCCTAGCGGTGC
AGTAGAAAAAACTGAAGCTACAACGGTGAATCTTGTCTCCACGACATTTCAATTAAAAAGATTGA
AGCCACAATGGCGAATCATAATTCCCTAGCGGTACAGTGGAACAAATTGAAACCACAACGACAAA
TCTTACTTCCCCGACAGCGCAATGAAAAAGATTCAAGCCACAACAGCGAATCTTATTT
Found at i:47941328 original size:499 final size:499
Alignment explanation
Indices: 47940294--47947351 Score: 5562
Period size: 499 Copynumber: 14.1 Consensus size: 499
47940284 AGTGGAACAA
* * * * *
47940294 ATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAATG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* ** *
47940359 GTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGACGAATCTTCCTTCC
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * ** *
47940424 CTAGCGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATCTAGCTCCCCCGACATTGCAATTA
131 CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATTA
* * * *
47940489 ATAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAATATG-TTGAAGCT
196 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAAGCT
* * *
47940553 ACAATGGTGAATCTTGTTT-CCCGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATCTT
260 ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTT
* * * * * *
47940617 ACTTCCCTAGCGGTGCAGTGGAAAAAATTGAAGCTACAACGGTGAATCTTGCTCTACGACATTGT
325 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTCCACGACATTGC
* *
47940682 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGA
390 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * *
47940747 AACCACAACGACAAATCTTGCTTCCCCGACATTGTAATTAAAAAG
455 AGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* *
47940792 ATTGAAGCCACAACAGCGAATCTTAC-TCTCCTGGCGGTGTAGTGGAACAGATCGAAGCTACAAC
1 ATTGAAGCCACAACAGCGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * * * *
47940856 GGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCTACAACTGCGAGTCTTACTTC
65 GGTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
* * * * * * * * *
47940921 CCTGGCGGTGCAATAGAGCATATTGACGGTACAACAGTGAAGCTGGCTCCCCCAACATTGCAATT
130 CCTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATT
* *
47940986 AAAAAGATTGAAGCCACAACTGCGAATCTTATTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
195 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * * *
47941051 ACAACGGAT-AATTTTGTTTCCCTGACATTGTAATTAAAAATATTAAAGCCACAATGGTGAATCT
260 ACAACGG-TGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCT
* * * * *
47941115 TACTTCCCCGGCGGTGCAGTGAAACAGATTGAAGCTACAACGGTGAATCTTGCTCCACAACTTTG
324 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTCCACGACATTG
* * * * * ** * ** * *
47941180 TAATGAAAAACATTAAAGCCACAACGGTAAATCTTACTTCCCTAGCGGTATAGTAGAGCAGATTG
389 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
** *
47941245 AAGCTACAACGGTAAATCTTGCTTCCCCGACATTGTAATTAAAAAT
454 AAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* * *
47941291 ATTGAAGCCACAACAACGAATCATACTTCCATGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47941356 GTGAATCTTGTTTCCCTGACATTGTAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCC
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * *
47941421 CTAGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGCGAA-CTAGCTCTCCCGACATTGCAATTA
131 CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATTA
* * * * * * * *
47941485 AAAAGTTTGAAGCCACAACGGCGAATCTTATTTCCTTCGCGATACAGTAGAACAGATTAAAGCTA
196 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * * * *
47941550 CAACAGTGAATCTGGTTTCCCCGATATTGCAATTAAAAAGATTGAAGACACAATGGTAAATCTTA
261 CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTA
** * * * * * *
47941615 CTTCCCTGGTAGTGTAGTGGAACAAATTGAAGTTACAACGATGAATCTTGTTCCACAATATTGCA
326 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTCCACGACATTGCA
* * ** * ** * * * * *
47941680 ATTAAAAAGATTAAAGCCCCAACAGTGAATCTTACTTAACTGTCAGTACAGTGGAGCAGATTAAA
391 ATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAA
* * *
47941745 GATACAACGGTGAATCTTGCTTCCCCGGACATAGTAATTAAAAAG
456 GCTACAACGGCGAATCTTGCTTCCCC-GACATTGTAATTAAAAAG
* * * *
47941790 ATTGAAGCCACAACAACGAATCTTACATCCCTAGCGGTGCAGTGGAAAAGATTGAAGCTACAACG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * *
47941855 GTGAATCATGTTTCCCTGACATTGTAATTGAAAAGATTGAAGCCACAACGATGAATCTTACTTTC
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * *
47941920 CTGGCGGTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCAGACATTGCAATTA
131 CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATTA
* * *
47941985 AAAAGTTTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGATTAAAGCTA
196 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* ** * * *
47942050 CAACGGTGAATCTTATTTCCCTAACATTGTAATTAAAAAGATTGAAGCCATAATGGTGAATATTA
261 CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTA
* * * * * *
47942115 CTTCTCTGGCGGTACAGTGGAATAGATTGGAGCTACAACGGTGAATCTTGTTTCCCCGACATTGT
326 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-TTCCACGACATTGC
* * * *
47942180 AATTAAAAAGATTGAATCCACAATGGCAAATCTTACTTCCCTGGCGGTGCCGTGGAACAAATTGA
390 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
** * * * *
47942245 AGCTACAATAGCGAATCTTGC-TCCACAACATTGCAAATAAAAAG
455 AGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* ** * * *
47942289 ATTGAAGCCATAATGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAAATTGAAGCTACAAC-
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** *** * *
47942353 GTCGAATCTTGCGTCCTAAACATTGTAATTAAAAATATTGAA-CCTACAACGGTGAATATTACTT
66 GT-GAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCC-ACAACGGTGAATCTTACTT
* * ** * * * ** * * *
47942417 CCATGACGGCACAGTGGAACAGATTCAAGCTACAATGGTGAATCTTATTTCCCGGACATTACAAT
129 CCCTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAAT
* * * *
47942482 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCAGTGCAGTGGAGCAGATTGAAGC
194 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * ** * * *
47942547 TAAAACGGTAAATC-TGGCTCTCCCGACATTGTAATTAAAAAGATTGAAGCCATAATGGAGAATC
259 TACAACGGTGAATCTTGTTTC-CCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATC
* * * * *
47942611 TTACTTCCCTGGTGGTACAGTGGAACAGATTGAAGCTACAACGGTGCATCTGGTTTCCCCGACAT
323 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-TTCCACGACAT
* *
47942676 TGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAAAT
387 TGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGAT
* *** *
47942741 TGAAGCTATAACGGCGAATCTTG-TTCCATAACATTGCAATTAAAAAG
452 TGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* * ** * * * * *
47942788 ATTGAAGCCCCAACGGCGAATCTTACTTAGCTGTCGGTACAGTGGAGCAAATTGAAGCTATAACG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * * *
47942853 GTGAATCTTACTTCCCCGACATTGTAATTAAAAAGATTGAAGCGACAACAGTAAATCTTACTTCC
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * * * * *
47942918 CTAGCGGTGCAGTGGAAAATATTAAAGCTACAACGGTGAATCTTGTTTCCCCGACACTGCAATTA
131 CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATTA
* ** * * * *
47942983 AAAAGATTGAAGCCACAACGGTGAATCTTACTTTTCTGGAGGTGCAATGGAGCAGATTAAAGCTA
196 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * * * * * *
47943048 CAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGAAGTCACAACGGTGAATCTTT
261 CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTA
* * * * * *** *
47943113 CTTCTCTGGTGGTGCAGTGGAACAAATTGAAGCTATAACGGTGAATCTTATTTCCTTAATATTGC
326 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GTTCCACGACATTGC
* * * * * * * *
47943178 ATTTTAAAAGACTGAAGCCACAATGACGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGGTTGG
390 AATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* *
47943243 AGCTACAACTGCGAATCTTGC-TCCACGACATTGTAATTAAAAAG
455 AGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
** * * * *
47943287 ATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAATG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * *
47943352 GTGAATCTTGTTTCCCCGACATTGGAATTAAAAAGATTGAAGACACAATGGAGAATATTACTTTC
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * *** *
47943417 CTGGCGGTGCAGTGGAACAAATTGAAGTTACAACGGTGAATCTTACAT-CCTAAACATTGTAATT
131 CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGC-TCCCCCGACATTGCAATT
* * * * *
47943481 AAAAAGATTGAA-CCTACAACGCCGAATCTTACTTCCCTAGCGGTACAGTAGAACAGATTCAAGC
195 AAAAAGATTGAAGCC-ACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * * *
47943545 TAAAATGGTGAATCTTATTTCCCCGACTTTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCT
259 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCT
* * * *
47943610 TACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTCGGC-CGACAT
324 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTC--CACGACAT
* * * *
47943674 TGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGGT
387 TGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGAT
** * *
47943739 TGAAGCTACAACGGTTAATCTTGTTTCCCCGACATTGCAATTAAAAAG
452 TGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* * * * *
47943787 ATTGAAGCCACAATAGCGAATATTACTTCCCTGGCAGTGCAGTGGAACAAATTAAAGCTACAACG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * *
47943852 GTGAATCTT-ACTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * * *
47943916 CTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTACTTCCCCGACATTGTAATTA
131 CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATTA
* * * *
47943981 AAAATATTGAAGCCACAACAGTC-AATCTTACTTCCCTGGCGGTACAGTGGAACAGAATGAAGCT
196 AAAAGATTGAAGCCACAAC-GGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * ***
47944045 ACAACGGTGAATCCTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACATTGAATCTT
260 ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTT
* * * * * * **
47944110 ACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCTC-TGGCGGT
325 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GTTC-CACGACATT
* * * * ** * * * * * *
47944174 GC-AGTAGAGCAA-ATTGAAGCTACAACGATGAATCTTGCTTCAC-GGC-ATAGCAAT-TATAAA
388 GCAATTA-A-AAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGT-GCAGTGGA-ACA
* * ** * * * ** **
47944234 GATTGAAGCCACAACGGCGAATCTTACTTCCTTGGCGGTT-TAGTGGAGCAG
449 GATTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC-ATTGTAATTAAAAAG
* * * * * * ** * * ** * * *
47944285 ATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACA
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** ** ** * ** * ** * * **
47944350 ACGAATCTTACTTCCTTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * ** * * * * * * ** *
47944415 CTGACATTGCAATTAAAG-AGATTGAAGCCACAATGGCGAATCTTACT-TCCCTAGCGGTGCAGT
131 CTGGCGGTGC-AGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGA-CATTGCAAT
* * * * * * ** * ** * *
47944478 GGAACAA-ATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTGCAATTAAAAATATTGAA
194 -TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAA
* * ** * * * * * ** ** * * **
47944540 GCCACAACGGTGAATCATACTTCCCTGGCGTTACAGTGGAGCAGATTGAAGCTACAACGGCAAAT
257 GCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAAT
* *** ** * * ** * * * * * *
47944605 CTTGCTTCCCCAACAATGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGC
322 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GTTCCAC-GAC
** * ** * * * * ** * ** * * *
47944669 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAT
385 ATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-
* ** * * ** * * * * * *
47944733 GATTGAAGCCACAATAGTGAATCTTACTTCCTTGGCAGTGCAGTGGAATAA-
449 GATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAAT-TAAAAAG
* * * * ** * ** * *
47944784 ATTAAAGCTACAACGGCGAATCTTAC-TCCAC-GACATTGCAATTAAAAAGATTGAAGCCACAAC
1 ATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* ** * **** * * ** ** * ** *
47944847 GGCGAATCTTACTTCCCTGGTGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATCTTGCTTC
65 GGTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
* * ** * * ** ** * * * * * * ** * * *
47944912 CCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTACAGTG
130 CCTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATT
* * * * ** ** * * ** * ** * * *
47944977 GAACAGATTGAAGCTACAATGGTAAATCTTGTTTGCCTGACATTGCAATTAAAAAGATTGAAACC
195 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* ** * * ** ** ** * * *
47945042 ACAAC-ATCGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCT
260 ACAACGGT-GAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCT
* * * * * * ** * *
47945106 TATTTCTCTGGCGGTGTAGTGGAGCAAATTGAAGCTACAATGACGAATCTTGCTCTACGACATTG
324 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTCCACGACATTG
* * * ** *
47945171 CAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTTTAGTGGAGCAGATTG
389 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * *
47945236 AAGTTACAACGGCAAATCTTGCTTTCCCGACATTGTAATTAAAAAG
454 AAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* *
47945282 ATTGAAGCCACAACAACGAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47945347 GTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCC
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * *
47945412 CTAGCGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCCTGCT-CCACGACATTGTAATTA
131 CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATTA
* * * *
47945476 AAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTA
196 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
** * * * ****
47945541 CAACGGCAAATCTTGCTTCCCCAACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTA
261 CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTA
*
47945606 CTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTTCC-CTGACATTG
326 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-TTCCAC-GACATTG
* ** * * *
47945670 CAATTAAAATGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCTGATTG
389 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
** * * *
47945735 AAGCTACAACGATGAATCTGGCTCCCCCGACCTTGTAATTAAAAAG
454 AAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* * *
47945781 ATTGAAGCCACAACTGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * *
47945846 GTGAATCTTGTTTCCCTGACATTGTAATTAAAAAGATTGAAGCGACAAGGGCGAATCTTACTTCT
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
** * * ** * *
47945911 CTGGCGGTGCAGTGGAATAGATTGAACCTACAATGGCAAATCTTGCT-CCACGACATTGTAATTA
131 CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATTA
* * * * *
47945975 AAAAGATTGAAGACACAACGGCAAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTA
196 AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * * * *
47946040 TAACGGCGAATCTGGTTTCCCCGACATTTCAATTAAAAAGATTGAAGCTACAACT-GTGAATCTT
261 CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA-TGGTGAATCTT
* * * * * *
47946104 ACTTCCTTGGCAGTGCAGTGGAACAGATTAAAGCTACAATGGTGAATCTTGTTTCCCCAACATTG
325 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-TTCCACGACATTG
* ** * ** * * * ** * ** *
47946169 TAATTAAAAAGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTG
389 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* ** * * * * * ** * * ** *
47946234 AAGCCACAACGATGAATCTTACATCTCTGGCGGTGCAGTGGAACAG
454 AAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* * * ** * ** * ** * * * *
47946280 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAATATTGAAGCCACAATG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** ** * * * * * * ** * * * *
47946345 GTGAAAATTACTTCTCTGGCAGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGC-TCC
66 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * ** ** * * * * * * * ** * * *
47946409 AC-GACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTG
131 -CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATT
* ** * * * *** ** * * ** * *
47946473 GAGCAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAATTAAAAAGATTGAAGCC
195 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* ** ** * ** * ** * * * *
47946538 ACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGCGAATCTT
260 ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTT
* * * ** * ** * * * * * **
47946603 GCTTCCCAGACATTGCAATTAAAAAGATTAAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGT
325 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTT-GTTCCAC-GACATT
* ** * * * * * ** ** * * ** * * ** *
47946667 GCAGTGGAATATATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAATTAAAAAGATT
388 GCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATT
* * ** * ** * ** * * ** *
47946732 GAAGCCACAACTGTAAATCTTACTTCCTTGGCGGTGCAGTGGAACAG
453 GAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* ** * ** **** * * ** * *
47946779 ATTGAAGCTACAATGGTGAATCTTGTTTCGCC-GATATTGTAATTAAAAAGATTGAAGCCACAAC
1 ATTGAAGCCACAACAGCGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * * ** *
47946843 GGTGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAGCCACAACGATGAATCTTACTTC
65 GGTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
* * * * * * *
47946908 CCTGGTGGTGAAGTGGAACAGATTGAAGTTACAACGGTGAATCTTGTTTCCCTGACATTGCAATT
130 CCTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATT
* ** * ** *
47946973 AAAAAGATTGAAGCCACAATGGCGAAAATTACTTCTCTGGTAGTGCAGTGGAATAGATTGAAGCT
195 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * *
47947038 ACAACGGTGAATCTTG-CTCCACGACATTGCAATTAAAAATATTGAAGCCACAACGGTGAATCTT
260 ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTT
* * * * *
47947102 ACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGTTGAATCTGGCTTCCCCGACATTG
325 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-TTCCACGACATTG
* * * * *
47947167 CAATTAAAAAGATTGTAGCCACAATGGTGAATCTTACTTCCTTGGTGGTGCAGTGGAACAAATTG
389 CAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
** *
47947232 AAGCTACAACGGCGAATCTTGCTTCCTAGACATTGCAATTAAAAAG
454 AAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
* * * * *
47947278 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGCTATAACG
1 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
*
47947343 ATGAATCTT
66 GTGAATCTT
47947352 ACTTGCCTGA
Statistics
Matches: 5282, Mismatches: 1204, Indels: 147
0.80 0.18 0.02
Matches are distributed among these distances:
497 19 0.00
498 1192 0.23
499 3597 0.68
500 398 0.08
501 76 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (499 bp):
ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
CTGGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTCCCCCGACATTGCAATTA
AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTA
CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTCCACGACATTGCA
ATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAA
GCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTAAAAAG
Found at i:47941823 original size:599 final size:599
Alignment explanation
Indices: 47940294--47947384 Score: 5494
Period size: 599 Copynumber: 11.8 Consensus size: 599
47940284 AGTGGAACAA
* * * *
47940294 ATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAATG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * *
47940359 GTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGACGAATCTTCCTTCC
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCC
* ** * ** * * *
47940424 CTAGCGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATCTAGCTCCCCCGACATTGCAATTA
131 CTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTG-TTCCACGACATTGCAATTA
* * * *
47940489 ATAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAATATG-TTGAAGCT
195 AAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAAGCT
* * * * * *
47940553 ACAATGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATCTT
259 ACAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTT
* * **
47940617 ACTTCCCTAGCGGTGCAGTGGAAAAAATTGAAGCTACAACGGTGAATCTTGC-TCTACGACATTG
324 ACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTG
* * * * *
47940681 TAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTG
389 CAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * *** * * *
47940746 AAACCACAACGACAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGA
454 AAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGA
* * * *
47940811 ATCTTAC-TCTCCTGGCGGTGTAGTGGAACAGATCGAAGCTACAACGGTGAATCTTG-TTTCCCC
519 ATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTAGCTCT-CCC
47940874 GACATTGCAATTAAAAAG
582 GACATTGCAATTAAAAAG
* * * * * * * * * *
47940892 ATTGAAGCTACAACTGCGAGTCTTACTTCCCTGGCGGTGCAATAGAGCATATTGACGGTACAACA
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * * *
47940957 GTGAAGCTGGCTCCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACT-GCGAATCTTATTTC
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA-TGGCAAATCTTACTTC
* * *
47941021 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGAT-AATTTTGTTTCC-CTGACATTGTAA
130 CCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGG-TGAATCTTG-TTCCAC-GACATTGCAA
* * ** * *
47941084 TTAAAAATATTAAAGCCACAATGGTGAATCTTACTTCCCCGGCGGTGCAGTGAAACAGATTGAAG
192 TTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * * * *
47941149 CTACAACGGTGAATCTTGC-TCCACAACTTTGTAATGAAAAACATTAAAGCCACAACGGTAAATC
257 CTACAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATC
** * * *
47941213 TTACTTCCCTAGCGGTATAGTAGAGCAGATTGAAGCTACAACGGTAAATCTTGCTTCCCCGACAT
322 TTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACAT
* * *** * *
47941278 TGTAATTAAAAATATTGAAGCCACAACAACGAATCATACTTCCATGGCGGTGCAGTGGAACAGAT
387 TGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGAT
* * *
47941343 TGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGTAATTAAAAATATTGAAGCCACAACGGC
452 TGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * *
47941408 GAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGCGAA-CTAGCTCTCCC
517 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTAGCTCTCCC
47941472 GACATTGCAATTAAAAAG
582 GACATTGCAATTAAAAAG
* * * * * * * * *
47941490 TTTGAAGCCACAACGGCGAATCTTATTTCCTTCGCGATACAGTAGAACAGATTAAAGCTACAACA
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47941555 GTGAATCTGGTTTCCCCGATATTGCAATTAAAAAGATTGAAGACACAATGGTAAATCTTACTTCC
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCC
** * * * * *
47941620 CTGGTAGTGTAGTGGAACAAATTGAAGTTACAACGATGAATCTTGTTCCACAATATTGCAATTAA
131 CTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGTTCCACGACATTGCAATTAA
* * ** * * * * * *
47941685 AAAGATTAAAGCCCCAACAGTGAATCTTACTTAACTGTCAGTACAGTGGAGCAGATTAAAGATAC
196 AAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
* ***
47941750 AACGGTGAATCTTGCTTCCCCGGACATAGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTA
261 AACGGTGAATCTTGCTTCCCC-GACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTA
* * * * * *
47941815 CATCCCTAGCGGTGCAGTGGAAAAGATTGAAGCTACAACGGTGAATCATGTTTCCCTGACATTGT
325 CTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGC
* * * * *
47941880 AATTGAAAAGATTGAAGCCACAACGATGAATCTTACTTTCCTGGCGGTGCAATGGAGCAGATTGA
390 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
** *
47941945 AGCTACAACGGTGAATC-TGGCTCCCCAGACATTGCAATTAAAAAGTTTGAAGCCACAACGGCGA
455 AGCTACAACGGTGAATCTTGTTTCCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGA
* * *
47942009 ATCTTACTTCCCTGGTGGTGCAGTGGAACAGATTAAAGCTACAACGGTGAATCTTA--TTTCCCT
519 ATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATC-TAGCTCTCCC-
* *
47942072 AACATTGTAATTAAAAAG
582 GACATTGCAATTAAAAAG
* * * * * * * *
47942090 ATTGAAGCCATAATGGTGAATATTACTTCTCTGGCGGTACAGTGGAATAGATTGGAGCTACAACG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47942155 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAATCCACAATGGCAAATCTTACTTCC
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCC
* ** * * * *
47942220 CTGGCGGTGCCGTGGAACAAATTGAAGCTACAATAGCGAATCTTGCTCCACAACATTGCAAATAA
131 CTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGTTCCACGACATTGCAATTAA
* ** * * * *
47942285 AAAGATTGAAGCCATAATGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAAATTGAAGCTAC
196 AAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
* *** * *
47942350 AAC-GTCGAATCTTGCGTCCTAAACATTGTAATTAAAAATATTGAA-CCTACAACGGTGAATATT
261 AACGGT-GAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCC-ACAACGGTGAATCTT
* ** * * ** *
47942413 ACTTCCAT-GACGGCACAGTGGAACAGATTCAAGCTACAATGGTGAATCTTATTTCCCGGACATT
324 ACTTCCCTAG-CGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATT
* * * *
47942477 ACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCAGTGCAGTGGAGCAGATT
388 GCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATT
* * ** * * * *
47942542 GAAGCTAAAACGGTAAATC-TGGCTCTCCCGACATTGTAATTAAAAAGATTGAAGCCATAATGGA
453 GAAGCTACAACGGTGAATCTTGTTTC-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGC
* * * * *
47942606 GAATCTTACTTCCCTGGTGGTACAGTGGAACAGATTGAAGCTACAACGGTGCATCT-GGTTTCCC
517 GAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTAGCTCT-CC
47942670 CGACATTGCAATTAAAAAG
581 CGACATTGCAATTAAAAAG
* * * *
47942689 ATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTATAACG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *** * * * **
47942754 GCGAATCTTG-TTCCATAACATTGCAATTAAAAAGATTGAAGCCCCAACGGCGAATCTTACTTAG
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCC
* * * * * * *
47942818 CTGTCGGTACAGTGGAGCAAATTGAAGCTATAACGGTGAATCTTACTTCCCCGACATTGTAATTA
131 CTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTT-GTTCCACGACATTGCAATTA
* * * * * *
47942883 AAAAGATTGAAGCGACAACAGTAAATCTTACTTCCCTAGCGGTGCAGTGGAAAATATTAAAGCTA
195 AAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * *
47942948 CAACGGTGAATCTTGTTTCCCCGACACTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTA
260 CAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTA
** * * * * * * *
47943013 CTTTTCTGGAGGTGCAATGGAGCAGATTAAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGC
325 CTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGC
* * * * * *
47943078 AATTAAAAAGTTTGAAGTCACAACGGTGAATCTTTCTTCTCTGGTGGTGCAGTGGAACAAATTGA
390 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * *** * * * * * *
47943143 AGCTATAACGGTGAATCTTATTTCCTTAATATTGCATTTTAAAAGACTGAAGCCACAATGACGAA
455 AGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAA
* * * * * * * *
47943208 TCTTACTTCTCTGGCGGTGCAGTGGAATAGGTTGGAGCTACAACTGCGAATCTTGCTC-CACGAC
520 TCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTAGCTCTCCCGAC
*
47943272 ATTGTAATTAAAAAG
585 ATTGCAATTAAAAAG
* * * * *
47943287 ATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAATG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47943352 GTGAATCTTGTTTCCCCGACATTGGAATTAAAAAGATTGAAGACACAATGG-AGAATATTACTTT
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCA-AATCTTACTTC
* ** * *
47943416 CCTGGCGGTGCAGTGGAACAAATTGAAGTTACAACGGTGAATCTTACATCCTA-AACATTGTAAT
130 CCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTT-GTTCC-ACGACATTGCAAT
* * * * *
47943480 TAAAAAGATTGAA-CCTACAAC-GCCGAATCTTACTTCCCTAGCGGTACAGTAGAACAGATTCAA
193 TAAAAAGATTGAAGCC-ACAACAG-TGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAA
* * ** *
47943543 GCTAAAATGGTGAATCTTATTTCCCCGACTTTGTAATTAAAAAGATTGAAGCCACAACGGTGAAT
256 GCTACAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAAT
* * *
47943608 CTTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGC-TCGGCCGAC
321 CTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCCGAC
*
47943672 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATAG
385 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAG
* * **
47943737 GTTGAAGCTACAACGGTTAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATA
450 ATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACG
* * * *
47943802 GCGAATATTACTTCCCTGGCAGTGCAGTGGAACAAATTAAAGCTACAACGGTGAATCTTA-CTC-
515 GCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATC-TAGCTCT
*
47943865 CACGACATTGCAATTAAAAAG
579 CCCGACATTGCAATTAAAAAG
* * *
47943886 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** ** * * * *
47943951 GCAAATCTTACTTCCCCGACATTGTAATTAAAAATATTGAAGCCACAACAGTC-AATCTTACTTC
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA-TGGCAAATCTTACTTC
* *
47944015 CCTGGCGGTACAGTGGAACAGAA-TGAAGCTACAACGGTGAATCCTGTTTCC-CTGACATTGCAA
130 CCTGGCGGTGCAGTGGAACA-AATTGAAGCTACAACGGTGAATCTTG-TTCCAC-GACATTGCAA
* * * *
47944078 TTAAAAAGATTGAAGCCACAACATTGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAG
192 TTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * ** * * * * *
47944143 CTACAACGGTGAATCTTACTTCTCTGGCGGTG-CAGTAGAGCAA-ATTGAAGCTACAACGATGAA
257 CTACAACGGTGAATCTTGCTTCCCCGACATTGTAATTA-A-AAAGATTGAAGCCACAACGGTGAA
* * * * * * * * * * **
47944206 TCTTGCTTCAC-GGC-ATAGCAAT-TATAAAGATTGAAGCCACAACGGCGAATCTTACTTCCTTG
320 TCTTACTTCCCTAGCGGT-GCAGTGGA-ACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCG
* * * * ** ** * ** * * * ** * * **
47944268 GCGGTT-TAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAA
383 AC-ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAA
* * *** ** ** * ** * * ** * *
47944332 AAGATTGAAGCCACAACAACGAATCTTACTTCCTTGGCGGTGTAGTGGAACAGATTGAAGCTACA
447 CAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACA
* ** * ** * ** * * * *
47944397 ACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAGAGATTGAAGCCACAATGGCGAATCTTA-C
512 ACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATC-TAGC
* ** * * *
47944461 T-TCCCTAGCGGTGCAGTGGAACAA-
576 TCTCCCGA-CATTGCAAT-TAAAAAG
* * * * ** * ** * * *
47944485 ATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTGCAATTAAAAATATTGAAGCCACAAC
1 ATTGAAGCCACAACGGCGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* ** * * * * * ** ** * * *
47944548 GGTGAATCATACTTCCCTGGCGTTACAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGCTTC
65 GGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTC
*** ** * * * * * * * * * ** *
47944613 CCCAACAATGTAAT-TAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAG
130 CCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTT-GTTCCAC-GACATTGCAA
** * * * ** * ** * * *
47944676 TGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAATGATTGAA
192 TTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAA
* ** * ** * * * * * * * * *
47944740 GCCACAATAGTGAATCTTACTTCCTTGGCAGTGCAGTGGAATAA-ATTAAAGCTACAACGGCGAA
256 GCTACAACGGTGAATCTTGCTTCCCCGACATTGTAAT-TAAAAAGATTGAAGCCACAACGGTGAA
* ** * ** * * * * * *
47944804 TCTTAC-TCCACGA-CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGG
320 TCTTACTTCC-CTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGA
*** * ** ** * ** * * * ** * * ** *
47944867 TGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAA
384 CATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACA
* * ** * * ** * * ** * * *
47944932 GATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAAT
449 GATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAAC
** ** * * ** * ** * * * *
47944997 GGTAAATCTTGTTTGCCTGACATTGCAATTAAAAAGATTGAAACCACAAC-ATCGAATCTTA-CT
514 GGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGT-GAATC-TAGCT
* ** ** ** *
47945060 -TCCCTGGCGGTGCAATGGAGCAT
577 CTCCC-GACATTGCAATTAAAAAG
* * * * * * * *
47945083 ATTGAAGCTACAACGGTGAATCTTATTTCTCTGGCGGTGTAGTGGAGCAAATTGAAGCTACAATG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * ** * **
47945148 ACGAATCTTG-CTCTACGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCC
* ** * * * ** *
47945212 CTGGTGGTTTAGTGGAGCAGATTGAAGTTACAACGGCAAATCTTGCTTTCC-CGACATTGTAATT
131 CTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTG--TTCCACGACATTGCAATT
** *
47945276 AAAAAGATTGAAGCCACAACAACGAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCT
194 AAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * * * *
47945341 ACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTT
259 ACAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTT
* * * *
47945406 ACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCCTGC-TCCACGACATTG
324 ACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTG
* * * *
47945470 TAATTAAAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTG
389 CAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
** * * * **
47945535 AAGCTACAACGGCAAATCTTGCTTCCCCAACATTGTAATTAAAAAGATTGAAGCCACAACAACGA
454 AAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGA
* * *
47945600 ATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTG-TTTCCCTG
519 ATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTAGCTCTCCC-G
*
47945664 ACATTGCAATTAAAATG
583 ACATTGCAATTAAAAAG
* * * *
47945681 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCTGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * * *
47945746 ATGAATCTGGCTCCCCCGACCTTGTAATTAAAAAGATTGAAGCCACAACT-GCGAATCTTACTTC
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA-TGGCAAATCTTACTTC
* * * *
47945810 CCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCC-CTGACATTGTAAT
130 CCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTG-TTCCAC-GACATTGCAAT
* ** * * * *
47945874 TAAAAAGATTGAAGCGACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAACC
193 TAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* ** * * **
47945939 TACAATGGCAAATCTTGC-TCCACGACATTGTAATTAAAAAGATTGAAGACACAACGGCAAATCT
258 TACAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCT
* * * * * * * *
47946003 TACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTATAACGGCGAATCTGGTTTCCCCGACATT
323 TACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATT
* * * * *
47946068 TCAATTAAAAAGATTGAAGCTACAACTGTGAATCTTACTTCCTTGGCAGTGCAGTGGAACAGATT
388 GCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATT
* * * * * *
47946133 AAAGCTACAATGGTGAATCTTGTTTCCCCAACATTGTAATTAAAAAGATTGAAGCCACAGCGGTG
453 GAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCG
** * * * ** * ** * * *
47946198 AATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGATGAATCTTA-CATCT-C
518 AATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATC-TAGC-TCTCC
* * ** * ** *
47946261 TGGCGGTGCAGTGGAACAG
581 CGACATTGCAATTAAAAAG
* * ** * ** * ** * * * *
47946280 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAATATTGAAGCCACAATG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** ** * * * * * ** * * ** *
47946345 GTGAAAATTACTTCTCTGGCAGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGC-TCC
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCC
* ** * * * * * * * ** * *
47946409 AC-GACATTGCAAT-TAAAAATATTGAAGCCACAACGGCGAATCTTACTTCC-CTGGCGGTGTAG
131 -CTGGCGGTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTT-GTTCCAC-GACATTGCAA
** ** * * * *** ** * * ** *
47946471 TGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAATTAAAAAGATTGAAG
192 TTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * ** * ** * * ** * * *
47946536 CCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGCGAATC
257 CTACAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATC
* ** * ** * * * * * * *
47946601 TTGCTTCCC-AGACATTGCAATTAAAAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCG
322 TTACTTCCCTAG-CGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACA
* * ** * * * * * ** * * ** * * ** *
47946665 GTGCAGTGGAATATATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAATTAAAAAGA
386 TTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGA
* * * ** ** * ** * ** * * *
47946730 TTGAAGCCACAACTGTAAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAATGG
451 TTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGG
* ** **** * * ** * * * *
47946795 TGAATCTTGTTTCGCC-GATATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTGGCTCCC
516 CGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTAGCTCTC
*
47946859 CCGACATTACAATTAAAAAG
580 CCGACATTGCAATTAAAAAG
** * * *
47946879 ATTGAAGCCACAACGATGAATCTTACTTCCCTGGTGGTGAAGTGGAACAGATTGAAGTTACAACG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47946944 GTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAA-ATTACTTC
66 GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGC-AAATCTTACTTC
* ** * * *
47947008 TCTGGTAGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTA
130 CCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGTTCCACGACATTGCAATTA
* * * *
47947073 AAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTA
195 AAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * * * *
47947138 CAACGTTGAATCTGGCTTCCCCGACATTGCAATTAAAAAGATTGTAGCCACAATGGTGAATCTTA
260 CAACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTA
* * * * * **
47947203 CTTCCTTGGTGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCTTGCTTCCTAGACATTGC
325 CTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGC
* *
47947268 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGA
390 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * ** * * * **
47947333 AGCTATAACGATGAATCTTACTTGCCTGACATTGCAGTTAATTAGATTGAAG
455 AGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAG
47947385 ATAGCAAATC
Statistics
Matches: 5128, Mismatches: 1261, Indels: 207
0.78 0.19 0.03
Matches are distributed among these distances:
596 1 0.00
597 110 0.02
598 1853 0.36
599 2845 0.55
600 312 0.06
601 7 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (599 bp):
ATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
GTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCC
CTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGTTCCACGACATTGCAATTAA
AAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTAC
AACGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTAC
TTCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCA
ATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAA
GCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAAT
CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTAGCTCTCCCGACA
TTGCAATTAAAAAG
Found at i:47944160 original size:299 final size:299
Alignment explanation
Indices: 47940294--47947384 Score: 5563
Period size: 299 Copynumber: 23.7 Consensus size: 299
47940284 AGTGGAACAA
* * * * *
47940294 ATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * * *
47940359 GTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAAC-GACGAATCTTCCTTC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTC
* ** ** * * *
47940423 CCTAGCGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATCTAGCTCCCCCGACATTGCAATT
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * *
47940488 AATAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAATATG-TTGAAGC
195 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAAGC
* ** *
47940552 TACAATGGTGAATCTTGTTTCCCGACATTGCAATTAAAAAG
259 TACAACGGTGAATCTTACTCCCCGACATTGCAATTAAAAAG
* * * * * *
47940593 ATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAAAAAATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * *
47940658 GTGAATCTTGC-TCTACGACATTGTAATTAAAAAGATTGAAGCCACAATGG-CGAATCTTACTTC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTC
* * * * *** * *
47940721 CCTGGCGGTACAGTGGAGCAGATTGAAACCACAACGACAAATCTTGCTTCCCCGACATTGTAATT
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * *
47940786 AAAAAGATTGAAGCCACAACAGCGAATCTTAC-TCTCCTGGCGGTGTAGTGGAACAGATCGAAGC
195 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGC
**
47940850 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAG
259 TACAACGGTGAATCTT-ACTCCCCGACATTGCAATTAAAAAG
* * * * * * * * * * *
47940892 ATTGAAGCTACAACTGCGAGTCTTACTTCCCTGGCGGTGCAATAGAGCATATTGACGGTACAACA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * *
47940957 GTGAAGCTGGCTCCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACTG-CGAATCTTATTTC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTC
* * *
47941021 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGAT-AATTTTGTTTCCCTGACATTGTAAT
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGG-TGAATCTTGCTTCCCTGACATTGCAAT
* * * * *
47941085 TAAAAATATTAAAGCCACAATGGTGAATCTTACTTCCCCGGCGGTGCAGTGAAACAGATTGAAGC
194 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * * * *
47941150 TACAACGGTGAATCTTGCTCCACAACTTTGTAATGAAAAAC
259 TACAACGGTGAATCTTACTCCCCGACATTGCAATTAAAAAG
* * * ** * *
47941191 ATTAAAGCCACAACGGTAAATCTTACTTCCCTAGCGGTATAGTAGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * ** *
47941256 GTAAATCTTGCTTCCCCGACATTGTAATTAAAAATATTGAAGCCACAAC-AACGAATCATACTTC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTC
* * *
47941320 CATGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGTAATT
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * *
47941385 AAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCT
195 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
*
47941450 ACAACGGCGAA-C-TAGCTCTCCCGACATTGCAATTAAAAAG
260 ACAACGGTGAATCTTA-CTC-CCCGACATTGCAATTAAAAAG
* * * * * * * * * *
47941490 TTTGAAGCCACAACGGCGAATCTTATTTCCTTCGCGATACAGTAGAACAGATTAAAGCTACAACA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * *
47941555 GTGAATCTGGTTTCCCCGATATTGCAATTAAAAAGATTGAAGACACAATGGTAAATCTTACTTCC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
** * * * * * *
47941620 CTGGTAGTGTAGTGGAACAAATTGAAGTTACAACGATGAATCTTG-TTCCAC-AATATTGCAATT
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CTGACATTGCAATT
* * * ** * * * * * *
47941683 AAAAAGATTAAAGCCCCAACAGTGAATCTTACTTAACTGTCAGTACAGTGGAGCAGATTAAAGAT
195 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * *
47941748 ACAACGGTGAATCTTGCTTCCCCGGACATAGTAATTAAAAAG
260 ACAACGGTGAATCTTAC-TCCCC-GACATTGCAATTAAAAAG
*** * * *
47941790 ATTGAAGCCACAACAACGAATCTTACATCCCTAGCGGTGCAGTGGAAAAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * * * *
47941855 GTGAATCATGTTTCCCTGACATTGTAATTGAAAAGATTGAAGCCACAACGATGAATCTTACTTTC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* * * * *
47941920 CTGGCGGTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCAGACATTGCAATTA
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
* * * *
47941985 AAAAGTTTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGATTAAAGCTA
196 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* ** *
47942050 CAACGGTGAATCTTATTTCCCTAACATTGTAATTAAAAAG
261 CAACGGTGAATCTTA-CTCCCCGACATTGCAATTAAAAAG
* * * * * * *
47942090 ATTGAAGCCATAATGGTGAATATTACTTCTCTGGCGGTACAGTGGAATAGATTGGAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47942155 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAATCCACAATGG-CAAATCTTACTTC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTC
* * ** * * *
47942219 CCTGGCGGTGCCGTGGAACAAATTGAAGCTACAATAGCGAATCTTGC-TCCAC-AACATTGCAAA
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CTGACATTGCAAT
* * * * * *
47942282 TAAAAAGATTGAAGCCATAATGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAAATTGAAGC
194 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* *** * *
47942347 TACAAC-GTCGAATCTTGCGTCCTAAACATTGTAATTAAAAAT
259 TACAACGGT-GAATCTTAC-TCCCCGACATTGCAATTAAAAAG
* * * ** * *
47942389 ATTGAA-CCTACAACGGTGAATATTACTTCCATGACGGCACAGTGGAACAGATTCAAGCTACAAT
1 ATTGAAGCC-ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
** * * *
47942453 GGTGAATCTTATTTCCCGGACATTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
65 GGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTC
* * * * * * *
47942518 CCTAGCAGTGCAGTGGAGCAGATTGAAGCTAAAACGGTAAATCTGGCTCTCCC-GACATTGTAAT
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT-TCCCTGACATTGCAAT
* * * * *
47942582 TAAAAAGATTGAAGCCATAATGGAGAATCTTACTTCCCTGGTGGTACAGTGGAACAGATTGAAGC
194 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* *
47942647 TACAACGGTGCATCTGGT-TTCCCCGACATTGCAATTAAAAAG
259 TACAACGGTGAATCT--TACTCCCCGACATTGCAATTAAAAAG
* ** * *
47942689 ATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTATAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *** * *
47942754 GCGAATCTTG-TTCCATAACATTGCAATTAAAAAGATTGAAGCCCCAACGG-CGAATCTTACTTA
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTC
* * * * * * * * *
47942817 GCTGTCGGTACAGTGGAGCAAATTGAAGCTATAACGGTGAATCTTACTTCCCCGACATTGTAATT
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * * *
47942882 AAAAAGATTGAAGCGACAACAGTAAATCTTACTTCCCTAGCGGTGCAGTGGAAAATATTAAAGCT
195 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
** *
47942947 ACAACGGTGAATCTTGTTTCCCCGACACTGCAATTAAAAAG
260 ACAACGGTGAATCTT-ACTCCCCGACATTGCAATTAAAAAG
** * * * *
47942988 ATTGAAGCCACAACGGTGAATCTTACTTTTCTGGAGGTGCAATGGAGCAGATTAAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * * *
47943053 GTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGAAGTCACAACGGTGAATCTTTCTTCT
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* * * ** * * * * *
47943118 CTGGTGGTGCAGTGGAACAAATTGAAGCTATAACGGTGAATCTTATTTCCTTAATATTGCATTTT
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
* * ** * * * *
47943183 AAAAGACTGAAGCCACAATGACGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGGTTGGAGCTA
196 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * * * *
47943248 CAACTGCGAATCTTGCTCCACGACATTGTAATTAAAAAG
261 CAACGGTGAATCTTACTCCCCGACATTGCAATTAAAAAG
* * * *
47943287 ATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * ** * *
47943352 GTGAATCTTGTTTCCCCGACATTGGAATTAAAAAGATTGAAGACACAATGGAGAATATTACTTTC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* * * * * *
47943417 CTGGCGGTGCAGTGGAACAAATTGAAGTTACAACGGTGAATCTTACAT-CCTAAACATTGTAATT
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCT-GACATTGCAATT
** * * * *
47943481 AAAAAGATTGAA-CCTACAACGCCGAATCTTACTTCCCTAGCGGTACAGTAGAACAGATTCAAGC
195 AAAAAGATTGAAGCC-ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * *
47943545 TAAAATGGTGAATCTTATTTCCCCGACTTTGTAATTAAAAAG
259 TACAACGGTGAATCTTA-CTCCCCGACATTGCAATTAAAAAG
* * *
47943587 ATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47943652 GTGAATCTTGC-TCGGCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
66 GTGAATCTTGCTTC-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTC
* * * * *
47943716 CCTGGCGGTGCAGTGGAATAGGTTGAAGCTACAACGGTTAATCTTGTTTCCCCGACATTGCAATT
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
** * * * * *
47943781 AAAAAGATTGAAGCCACAATAGCGAATATTACTTCCCTGGCAGTGCAGTGGAACAAATTAAAGCT
195 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
*
47943846 ACAACGGTGAATCTTACTCCACGACATTGCAATTAAAAAG
260 ACAACGGTGAATCTTACTCCCCGACATTGCAATTAAAAAG
* *
47943886 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * * * *
47943951 GCAAATCTTACTTCCCCGACATTGTAATTAAAAATATTGAAGCCACAACAGTCAATCTTACTTCC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* * * *
47944016 CTGGCGGTACAGTGGAACAGAATGAAGCTACAACGGTGAATCCTGTTTCCCTGACATTGCAATTA
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
** * * *
47944081 AAAAGATTGAAGCCACAACATTGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTA
196 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * * ** * *
47944146 CAACGGTGAATCTTACTTCTCTGGCGGTGC-AGTAGAGCAA-
261 CAACGGTGAATCTTAC-TCCCCGACATTGCAATTA-A-AAAG
* * * * * * * * *
47944186 ATTGAAGCTACAACGATGAATCTTGCTTCAC-GGC-ATAGCAAT-TATAAAGATTGAAGCCACAA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGT-GCAGTGGA-ACAGATTGAAGCTACAA
* * ** * * * * ** ** * *
47944248 CGGCGAATCTTACTTCCTTGGCGGTT-TAGTGGAGCAGATTGAAGCTACAACGG-CAAATCTTGC
64 CGGTGAATCTTGCTTCCCCGAC-ATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTAC
* * ** * * ** * * *** * * * ** *
47944311 TTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCTTGGCGGTGTA
127 TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCA
* ** * * ** * ** * ** *
47944376 GTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAGAGATTGAA
192 ATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAA
* * * * * ** * * *
47944441 GCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAA-
257 GCTACAACGGTGAATCTTACTCCCCGA-CATTGCAAT-TAAAAAG
* * * ** * ** * * *
47944485 ATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTGCAATTAAAAATATTGAAGCCACAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * * * * * * ** ** * *
47944548 GGTGAATCATACTTCCCTGGCGTTACAGTGGAGCAGATTGAAGCTACAACGG-CAAATCTTGCTT
65 GGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTT
*** ** * * ** * * * * * * ** *
47944612 CCCCAACAATGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGT
129 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAAT
** * * ** * ** * * *
47944677 GGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAATGATTGAAG
194 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAAG
* ** ** * * * * *
47944741 CCACAATAGTGAATCTTACTTCCTTGGCAGTGCAGTGGAATAA-
258 CTACAACGGTGAATCTTAC-TCCCCGACATTGCAAT-TAAAAAG
* * * * ** * ** * *
47944784 ATTAAAGCTACAACGGCGAATCTTAC-TCCAC-GACATTGCAATTAAAAAGATTGAAGCCACAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * * **** * ** ** * *
47944847 GGCGAATCTTACTTCCCTGGTGGTGCAGTGGAGTAGATTGAAGCTACAACGG-CAAATCTTGCTT
65 GGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTT
* * ** * * ** * * * * * ** * *
47944911 CCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTACAGT
129 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAAT
** * * * * ** * * ** * ** * *
47944976 GGAACAGATTGAAGCTACAATGGTAAATCTTGTTTGCCTGACATTGCAATTAAAAAGATTGAAAC
194 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * ** ** ** *
47945041 CACAAC-ATCGAATCTTACTTCCCTGGCGGTGCAATGGAGCAT
259 TACAACGGT-GAATCTTAC-TCCCCGACATTGCAATTAAAAAG
* * * * * * *
47945083 ATTGAAGCTACAACGGTGAATCTTATTTCTCTGGCGGTGTAGTGGAGCAAATTGAAGCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** ** *
47945148 ACGAATCTTGC-TCTACGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* ** * * ** *
47945212 CTGGTGGTTTAGTGGAGCAGATTGAAGTTACAACGGCAAATCTTGCTTTCCC-GACATTGTAATT
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TTCCCTGACATTGCAATT
*** *
47945276 AAAAAGATTGAAGCCACAACAACGAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCT
195 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
** *
47945341 ACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAG
260 ACAACGGTGAATCTT-ACTCCCCGACATTGCAATTAAAAAG
* * * *
47945382 ATTGAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * *
47945447 GCGAATCCTGC-TCCACGACATTGTAATTAAAAATATTGAAGCCACAACGGTGAATCTTACTTCC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* * ** ** *
47945511 CTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCAACATTGTAATTA
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
*** *
47945576 AAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCTA
196 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
** * *
47945641 CAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAATG
261 CAACGGTGAATCTT-ACTCCCCGACATTGCAATTAAAAAG
* * * * *
47945681 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCTGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * *
47945746 ATGAATCTGGCTCCCCCGACCTTGTAATTAAAAAGATTGAAGCCACAACTG-CGAATCTTACTTC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTC
* * * *
47945810 CCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGTAATT
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* * * * * *
47945875 AAAAAGATTGAAGCGACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAACCT
195 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* ** * * *
47945940 ACAATGGCAAATCTTGCTCCACGACATTGTAATTAAAAAG
260 ACAACGGTGAATCTTACTCCCCGACATTGCAATTAAAAAG
* ** * * * *
47945980 ATTGAAGACACAACGGCAAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTATAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * * *
47946045 GCGAATCTGGTTTCCCCGACATTTCAATTAAAAAGATTGAAGCTACAACTGTGAATCTTACTTCC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* * * * * ** *
47946110 TTGGCAGTGCAGTGGAACAGATTAAAGCTACAATGGTGAATCTTGTTTCCCCAACATTGTAATTA
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
* ** * * * ** * ** * *
47946175 AAAAGATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCA
196 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
* * * * ** * ** *
47946240 CAACGATGAATCTTACATCTCTGGCGGTGCAGTGGAACAG
261 CAACGGTGAATCTTAC-TCCCCGACATTGCAATTAAAAAG
* ** * ** * ** * * * *
47946280 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAATATTGAAGCCACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * * * * * * ** * * * * *
47946345 GTGAAAATTACTTCTCTGGCAGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGC-TCC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* ** * ** * * * * * * ** * * *
47946409 AC-GACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTG
131 -CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATT
* ** * * *** ** * * ** * *
47946473 GAGCAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAATTAAAAAGATTGAAGCC
195 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* ** * ** * ** *
47946538 ACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGGAATAG
260 ACAACGGTGAATCTTAC-TCCCCGACATTGCAATTAAAAAG
* * * * * ** * ** * * *
47946579 ATTGAAGCTACAACGGCGAATCTTGCTTCCCAGACATTGCAATTAAAAAGATTAAAGCCACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * ** * ** * * * * * * **
47946644 GTGAATCTTACTTCCCTGGCGGTGCAGTGGAATATATTGAAGCTATAACGATGAATCTGGCTTCC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* * ** * * ** * * * * * * * ** * **
47946709 CCGACATTACAATTAAAAAGATTGAAGCCACAACTGTAAATCTTACTTCCTTGGCGGTGCAGTGG
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
* * * ** **** * * ** * *
47946774 AACAGATTGAAGCTACAATGGTGAATCTTGTTTCGCC-GATATTGTAATTAAAAAGATTGAAGCC
196 AAAAGATTGAAGCCACAACGGTGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCT
** *
47946838 ACAACGGTGAATCTGGCTCCCCCGACATTACAATTAAAAAG
260 ACAACGGTGAATCTTACT-CCCCGACATTGCAATTAAAAAG
* * * *
47946879 ATTGAAGCCACAACGATGAATCTTACTTCCCTGGTGGTGAAGTGGAACAGATTGAAGTTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * **
47946944 GTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGG-CGAAAATTACTTC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTC-AATCTTACTTC
* ** *
47947008 TCTGGTAGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTGCAAT
130 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCC-CTGACATTGCAAT
* * *
47947071 TAAAAATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGC
194 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* **
47947136 TACAACGTTGAATCTGGCTTCCCCGACATTGCAATTAAAAAG
259 TACAACGGTGAATCTTAC-TCCCCGACATTGCAATTAAAAAG
* * * * *
47947178 ATTGTAGCCACAATGGTGAATCTTACTTCCTTGGTGGTGCAGTGGAACAAATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* ** *
47947243 GCGAATCTTGCTTCCTAGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
66 GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
* * * * * * *
47947308 CTGGCAGTGCAGTGGAACAAATTGAAGCTATAACGATGAATCTTACTTGCCTGACATTGCAGTTA
131 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
**
47947373 ATTAGATTGAAG
196 AAAAGATTGAAG
47947385 ATAGCAAATC
Statistics
Matches: 5606, Mismatches: 1099, Indels: 173
0.82 0.16 0.03
Matches are distributed among these distances:
297 5 0.00
298 285 0.05
299 3506 0.63
300 1707 0.30
301 102 0.02
302 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (299 bp):
ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
GTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTCAATCTTACTTCC
CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTA
CAACGGTGAATCTTACTCCCCGACATTGCAATTAAAAAG
Found at i:47944372 original size:349 final size:349
Alignment explanation
Indices: 47934353--47946609 Score: 5120
Period size: 349 Copynumber: 35.1 Consensus size: 349
47934343 ATAGTGGAAT
* * * * *
47934353 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGACAGTGTAGTGGAACATATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * **
47934418 CAGCGAATCTTACTTCCTCGACATTGTAATTAAAAAGATTGAAATCACAACGGCGAATCTTACTT
66 CGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * ** *
47934483 TCCTTGCGGTACAGTGGACCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCAAACATTGTAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
** * ** * **
47934548 TAAAAAGATTGAAGGTACAACAGCGAATCTTACTTCCCTGGCGGCACAGTGAAACAGATACAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * * *
47934613 -ACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCA
260 TACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCT
** * * **
47934677 TACTTCCCT-AGTGGTGCAGTGGAGC
325 TACTTCCCTGA-CAGTGCAATGAAAA
* ** * ** * * * *
47934702 AGATTGAAGCTACAACGGTGAATCTGGCTCTCCC-GACATTGCAAT-TAAAAAGATTGAAGCCAC
1 AGATTGAAGCTACAACGGCGAATCTTACT-TCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTAC
* * * ** * * ** * * * **
47934765 AACGGCGAATCTTACTTCTCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGT
64 AACGGCGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC
* * ** * ** * * * * * * * ** *
47934830 TTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCC
128 TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCA
* * * * ** * ** ** * * *
47934895 GTGGAACAA-ATTGAAGCTACAATAGCGAATCTTGC-TCCAC-AACATTGCAAAT-AAAAAGATT
193 AT-TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC-CTGGCGGTGC-AGTGGAACAGATT
* * ** * ** ** * ** ** * **
47934956 GAAGCCACAACGGTGAACCTTACTTCCCTGTCGGTATAGTGGAGCAGATTGAAGCTACAATAGTG
255 GAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTG
* * * * * *
47935021 AATCTTGCTTCCCCGATATTGTAATTAAAA
320 AATCTTACTTCCCTGACAGTGCAATGAAAA
* * * * * *
47935051 AGATTGAAGCCACAACAGTGAATCTTACTTCCCTAGCGGTGCAGTGGAACAGATTGAAGCAACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
** * *
47935116 CGGTAAAT-TATGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACT
66 CGGCGAATCT-TGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * * * *
47935180 TCCCTGGCGGTGCAATGGAGCAGATTGAAGCGACAACGGTGAATCTGGCTCCCCCGACATTGCAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAA
* * * *
47935245 TGAGAAAGTTTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * **
47935310 CTACAACGGTGAATCTTATTTCCCTAACATTGCAACTAAAAAGATTGAAGCCACAATAGTGAATC
259 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * * * * *
47935375 TTACTTCTCTGGCGGTACAGTGGAAT
324 TTACTTCCCTGACAGTGCAATGAAAA
* * ** * * * *
47935401 AGATTGAAGCTACAACAGCGAATCTTAC-TCCAC-GACATTGTAGT-TAAAAAGATTGAAGCCAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAA-ATTGAAGCTAC
* * * ** * **** ** * ** **
47935463 AACGACGAATCTTACTTCCCTGGCGGTGTAGGGGAGCAGATTGAAGCTACAACGATGAATCTTGT
64 AACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC
* ** * ** * * * * * * **
47935528 TTCTC-GGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATCTTACTT-CCCTAGCGGTG
128 TTCCCTGG-CGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGA-CATTG
* * * * * * ******* * * ** *
47935591 CAGTGGAACAA-ATTGAAGCTACAACGGCGAATCTTGCATCCAAAATATTGTAATTAAAAAGATT
191 CAAT-TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATT
* * ** *** * ** * * *
47935655 GAAGCTACAATGGAGAATCTTACTTCCCT-AGCGGAGCAGTGGAATAGATTCAAGCTACAACGGT
255 GAAGCTACAACGGTGAATCTTGTTTCCCTGA-CATTGCAATTAAAAAGATTGAAGCCACAACGGT
* * * * *
47935719 GAATCTTATTTCCCCGACACTGTAATTAAAA
319 GAATCTTACTTCCCTGACAGTGCAATGAAAA
* * ** ** * ** * *
47935750 AGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGCAATGGAGTAGATTGAATCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
** *
47935815 CGGCGAATCAGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
66 CGGCGAATCTTGCT-TCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * *
47935880 CCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAATGGGGAATCTTGTTTCCCCGACATTGCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * * * *
47935945 TAAAAAGATT-AAGGCCACAATGGTGAATCTTACTTCCCTGGCAGTGCAGTGGCACAAATTGAAG
195 TAAAAAGATTGAA-GCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * ** *** * * * * **
47936009 CTACAACAGCGAATCTT-ACTCCAAAATATTACAATTAAAAAAATTGAAGCCACAATGGCAAATC
259 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
** * * * * * **
47936073 TTACTTCTTTGTCGGTACAGTGGAGC
324 TTACTTCCCTGACAGTGCAATGAAAA
* * * * * **** ** * * * *
47936099 AGATTGAAGCTATAATGGTGAATCTTGCTTCCCCGATATTTTAAT-TAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* * * ** * * * * **
47936163 ACAGCGAATCTTACTTCCCTGGCGGTGC-AGTAGAACAGATTGAAGCCACAACGGGGAATCATGT
65 ACGGCGAATCTTGCTTCCC-GACATTGCAATTA-AAAAGATTGAAGCCACAACGGCGAATCTTAC
****** * ** * * * * * **
47936227 TTCCCCAATATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTT-CCCTAGCGGTGC
128 TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGA-CATTGC
** ** * * ** * * * ** * * ** * *
47936291 AATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTACAATTAAAAAGTTTGA
192 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * ** * * * * * * *
47936356 TGCCACAACGGCGAATCTTACTTCTCTGGCGA-TGCAGTGGAACAA-ATTGAAGCTACAATGGTG
257 AGCTACAACGGTGAATCTTGTTTCCCTGAC-ATTGCAAT-TAAAAAGATTGAAGCCACAACGGTG
* * * *
47936419 AATCTTATTTCCCTAACATTGCAATTAAAA
320 AATCTTACTTCCCTGACAGTGCAATGAAAA
* * * * * * * * *
47936449 AGATTGAAGCCACAATGGTGAATCTTCCTGCTCTGGCAGTGCAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
*** * * *
47936514 CAATGAATCTTGC-TCCACGACATTGCAATTAAAAAGATTAAAGTCACAACGGTGAATCTTACTT
66 CGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * ** *
47936578 CACTAGTGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTACAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * * * * *
47936643 TAAAAAGATTGAAGCCATAATGGTGAATCTTACTTCCCTGG-GAGTGTAATGGAACAAATTGAAG
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCG-GTGCAGTGGAACAGATTGAAG
* ** * * * *
47936707 CTACAACGGCGAATCTTG-CACCCTAAACATTGTAATTCAAAAGATTGAAG-TACAACGGTGAAT
259 CTACAACGGTGAATCTTGTTTCCCT-GACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAAT
*** * * * *
47936770 CTTACTTCCCTGGTGGCGCAGTGGAAC
323 CTTACTTCCCTGACAGTGCAATGAAAA
* * ** * * * * ** * * * * *
47936797 AGATTCAAGCTGCAATAGTGAATCTTATTTCCCAGACATTGTAAT-TAAAAATATTGAAGCCACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* ** * ** * * ** **
47936861 ACGGCGAATCTTACTTTTCTAGCGGTGCAGTGGAGCAA-ATTGAAGCCACAACGGCGAATCTGGC
65 ACGGCGAATCTTGCTTCCCGA-CATTGCAAT-TAAAAAGATTGAAGCCACAACGGCGAATCTTAC
* * * ** ** * ** * * * * * **
47936925 TCCCCCGACATTATAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCA
128 TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCA
* ** * * * *** * ** * ** * ** *
47936990 GTGGAACAGGTTGAAGCTACAACGATAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAA
193 ATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAA
* * * ** * ** * * * * *
47937055 GCCACAATGGCGAATCTTACTTCCCTGGCGGTACAGTGAAACAA-ATTGAAGCAACAATGGTGAA
258 GCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAA-AAGATTGAAGCCACAACGGTGAA
* * * * *
47937119 TC-AAGTTTCCCCGACATTGCAATTAAAA
322 TCTTA-CTTCCCTGACAGTGCAATGAAAA
* * * * * *
47937147 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGTGGTGCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
*** * * * * *
47937212 CATTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGCAGCCACAACAGCGAATCTTACTT
66 CGGCGAATCTTGCT-TCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * ** * ** *
47937277 CCCTGGCAGTGCAGTGGAACAGATTGAAACTACAACGGTGAATCTTATTTCTCTAACATTCCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * * * *
47937342 TAAAAAGATCGAAGCCATAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
** * ** * **
47937407 TACAATAGCGAATCTT-ACTCCAC-GACATTGCAGTTAAAAAGATTGAAGCCACAACGACGAATC
260 TACAACGGTGAATCTTGTTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * * * **
47937470 TTACTTCCCTGGCGGTGTAGTGGAGC
324 TTACTTCCCTGACAGTGCAATGAAAA
* ** ** * ** * * * * *
47937496 AGATTGAATCTACAACGATGAATCTTGTTTCTC-GGACATTGCAAT-TAAAAATATTAAAGCCAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGG-CGGTGCAGTGGAACAA-ATTGAAGCTAC
* * * ** * * * * *
47937559 AATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTT-
64 AACGGCGAATCTTGCTTCCCGA-CATTGCAAT-TAAAAAGATTGAAGCCACAACGGCGAATCTTA
* **** ** * * ** * * * * **
47937622 GTATCCAAAACATTGTAATTAAAAAGATTGAAGCTACAATGGAGAATCTTAG-TT-CCCTAGCGG
127 CT-TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT-GCTTCCCCGA-CAT
* * ** * * * * * * * ** * ** *
47937685 CGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTTCCCCGACACTGCAATTAAAAAGAT
189 TGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGAT
* * * ** * * * ** ** * *
47937750 TGAAGCCACAATGGCGAATCTTACTTCCCT-ACCAATACAGTGGAGTAGATTGAATCTACAACGG
254 TGAAGCTACAACGGTGAATCTTGTTTCCCTGA-CATTGCAATTAAAAAGATTGAAGCCACAACGG
* ** * * * *
47937814 CGAATCTGGCTCCCCCGACATTGCAATTAAAA
318 TGAATCTTACTTCCCTGACAGTGCAATGAAAA
* * * **
47937846 AGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * *
47937911 TGGTGAATCTTGTTTCCCCGATATTGCAATTAAAAAGATT-AAGGCCACAATGGCGAATCTTACT
66 CGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAA-GCCACAACGGCGAATCTTACT
* * * * * * * *
47937975 TCCCTGGCAGTGCAGTGGCACAAATTGAAGCTACAACAGCGAATCTTGC-TCCACAATATTGTAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAA
* * * *
47938039 TTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * * * * *
47938104 TTATAATGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATC
259 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * * *
47938169 TTACTTCTCTGGCGGTGCAGT-AGAAC
324 TTACTTCCCTGACAGTGCAATGA-AAA
* * * ** * * ** * * * * *
47938195 AGATTGAAGCTACAATGGGGAATCATGTTTCCCCGACATTGTAAT-TAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* * * * * * ** ** ** * * **
47938259 GCAGTGAATCTTACTTCTCTAGCGGTGCAATGGAGCAGATTGAAGCTACAACGGTGAATCTGGCT
65 ACGGCGAATCTTGCTTCCCGA-CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * ** * ** * * * * * **
47938324 CCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGA-GGTGCA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCC-CGACATTGCA
* ** * * * * * ** * * ** * ** *
47938388 GTGGAACAGGTTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATT-AA
193 ATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAA
* * ** ** ** * * * * * *
47938452 GGCCACAATGGCAAATCTTACTTCCCT-AGCGGTGCAGTGGAACAA-ATTGAAGCTACAACAGCG
258 -GCTACAACGGTGAATCTTGTTTCCCTGA-CATTGCAAT-TAAAAAGATTGAAGCCACAACGGTG
* * * *
47938515 AATCTTGC-TCCAC-AACATTGCAATTAAAA
320 AATCTTACTTCC-CTGACAGTGCAATGAAAA
* * * * * * * * *
47938544 AGATTGAAGCCACAACGACAAATCTTACTTCCCTGTCGGTACTGTGGAGCAGATTGAAGCTATAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * * *
47938609 TGGTGAATCTTGGTTCCCCGACATTGTAATTAAAAAGATTGATGCCACAACAGCGAATCTTACTT
66 CGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * *
47938674 CGCTGGCGGTGCAGTAGAACAGATTGAAGCTACAATGGTGAATCGTGTTTCCCCGACATTGCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * * * *
47938739 TAAAAAGATTGAAGCCACAACAGC-AATCTTACTTCCTTGGCGGTCCAATGGAGCAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * **
47938803 TACAACGGTGAATCTAGCTCTCCC-GACATTGCAATTAAAAAGTTTGAAGCCACAACAGCAAATC
260 TACAACGGTGAATCTTG-TTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * *
47938867 GTACTTCCCTGGC-GATGCAGTGGAACA
324 TTACTTCCCTGACAG-TGCAAT-GAAAA
* * ** ** * * * *
47938894 A-ATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAAT-TAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
** * * * * ** * ** * * *** *
47938957 ATAGAGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACAATGAATCTTGC-
65 ACGGCGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* ** * * ** * * * * * *
47939021 TCCAC-GACATTACAATTAAAAAGATTAAAGTTACAACGGCGAATCTTACTT-CCCTA-GTGGTG
129 TCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACAT--TG
* * ** ** * * * * * ** * ** *
47939083 TAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTG
191 CAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTG
* * ** ** * * * * * * * *
47939148 AAGCCACAATGGTGAATCTTACTTCCCTGGTAGTGTAGTGGAACAA-ATTGAAGCTACAACAGCG
256 AAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAAGATTGAAGCCACAACGGTG
* * * * * * *
47939212 AATCTTGC-ACCCTAAATATTGTAATTAAAA
320 AATCTTACTTCCCT-GACAGTGCAATGAAAA
** * * *
47939242 AGATTGAAGCTACAACGGTAAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
** * ** * * **
47939307 TAGTGAATCTTATTTCCCCGACATTACAATTAAAAATATTGAAGCCACAACGATGAATCTTACTT
66 CGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * *
47939372 CCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAATGGCGAATCTGGCTCCCCCGACATTACAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * * * *
47939437 TAAAAAGATTGAAGCCACAACGGTGAATCTTATTTCCCTGGAGGTGCAGTGGAACAGGTTAAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * *
47939502 TACAACGGTAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATT-AATGCCACAATGGTGAATC
260 TACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAA-GCCACAACGGTGAATC
* * * *
47939566 TTATTTCCCTGGCTGTGCAGTGAAACA
324 TTACTTCCCTGACAGTGCAATGAAA-A
* * * ** ** * * * *
47939593 A-ATTGAAGCTAGAACGGTGAATCTTGC-TCCAC-AACATTGCAAT-TAAAAAGATTGAAGCCAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAA-ATTGAAGCTAC
* * * ** * **** ** * *
47939654 AACGGTGAATCTTACTTCCCTGTCGGTACAGCGGAGTAGATTGAAGCTACAAC-GCTGAATCTTG
64 AACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGC-GAATCTTA
* **** ** * ** * * ** * * * **
47939718 CTTCCCCGATATTATAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCTCCGGCGGTGC
127 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
* ** * * * ** * * ** * * *
47939783 AGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATGAAAAAGATTGA
192 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * ** * *
47939848 AGCCACAACAGCGAATCTTACTTCCCTGGAGA-TGCAA-TAATAGAGCAGATTGAAGCTACAACG
257 AGCTACAACGGTGAATCTTGTTTCCCT-GACATTGCAATTAA-A-A--AGATTGAAGCCACAACG
* ** * * * * *
47939911 GTGACTCTGGCTCCCCCGACATTGTAATTAAAA
317 GTGAATCTTACTTCCCTGACAGTGCAATGAAAA
* * * * * *
47939944 TG-TATGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGAAACAGATTGAAGCTACA
1 AGAT-TGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACA
* ** * * * * * *
47940008 ACGGTGAATCTTATTTCCCTAACATTGTAATTAAAAAAATTGAAGCCATAATGGAGAATCTTACT
65 ACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * * * * *
47940073 TCTCTGGCGGTGCGGTGGAACAGATTGAAGCTACAACAGCAAATCTTGC-TGCCTGACATTACAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAA
* * * * * * * **
47940137 TTAAAAAGATTAAAG-TACAACAGCGAATCTTACTTCCCTAGCGGTGTAGTAGAGCAGGCTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * *
47940201 CTACAATGGTGAATCTTGTTTCCCCGACATTTCAATTAAAAAGATTGAAGCCACAATGGCGAATC
259 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * * * *
47940266 ATAATTCCCT-AGCGGTGTAGTGGAACA
324 TTACTTCCCTGA-CAGTGCAAT-GAAAA
* * *
47940293 A-ATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * ** * * *
47940357 TGGTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGACGAATCTTCCTT
66 CGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* ** * * *
47940422 CCCTAGCGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATCTAGCTCCCCCGACATTGCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * * *
47940487 TAATAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAATATG-TTGAAG
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAAG
* * * *
47940551 CTACAATGGTGAATCTTGTTTCCC-GACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATC
259 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* *
47940615 TTACTTCCCT-AGCGGTGCAGTGGAAAA
324 TTACTTCCCTGA-CAGTGCAAT-GAAAA
* * * * ** * * * * *
47940642 A-ATTGAAGCTACAACGGTGAATCTTGC-TCTAC-GACATTGTAAT-TAAAAAGATTGAAGCCAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAA-ATTGAAGCTAC
* * * ** * * ** ** * * * *
47940703 AATGGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAACCACAACGACAAATCTTGC
64 AACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC
* * ** * * ** * * * * * * ** *
47940768 TTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTAC-TCTCCTGGCGGTGT
128 TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTC-CCCGACATTGC
* ** * * * * ** * * ** * ** *
47940832 AGTGGAACAGATCGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGA
192 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * ** * ** ** * * ** *
47940897 AGCTACAACTGCGAGTCTTACTTCCCTGGCGGTGCAA-TAGAGCATATTGACGGTACAACAGTGA
257 AGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTA-AAAAGATTGAAGCCACAACGGTGA
* ** * ** * *
47940961 AGCTGGCTCCCCCAACATTGCAATTAAAA
321 ATCTTACTTCCCTGACAGTGCAATGAAAA
* * * *
47940990 AGATTGAAGCCACAACTGCGAATCTTATTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
** * * * * * * *
47941055 CGGATAATTTTGTTTCCCTGACATTGTAATTAAAAATATTAAAGCCACAATGGTGAATCTTACTT
66 CGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * *
47941120 CCCCGGCGGTGCAGTGAAACAGATTGAAGCTACAACGGTGAATCTTGC-TCCACAACTTTGTAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * * ** * ** * *
47941184 GAAAAACATTAAAGCCACAACGGTAAATCTTACTTCCCTAGCGGTATAGTAGAGCAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * * *** *
47941249 TACAACGGTAAATCTTGCTTCCCCGACATTGTAATTAAAAATATTGAAGCCACAACAACGAATCA
260 TACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCT
* * * * * *
47941314 TACTTCCATGGCGGTGCAGTGGAAC
325 TACTTCCCTGACAGTGCAATGAAAA
* ** * ** * * * * *
47941339 AGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGTAAT-TAAAAATATTGAAGCCACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* * ** * ** ** *
47941403 ACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGCGAA-C-TAGC
65 ACGGCGAATCTTGCTTCCCGA-CATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTA-C
* ** * ** * * * ** *
47941466 TCTCCC-GACATTGCAATTAAAAAGTTTGAAGCCACAACGGCGAATCTTATTTCCTTCG-CGA-T
128 T-TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCC-CCGAC-ATT
* * * * * * * *** * **** * ** *
47941528 AC-AGTAGAACAGATTAAAGCTACAACAGTGAATCTGGTTTCCCCGATATTGCAATTAAAAAGAT
190 GCAATTA-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGAT
* * ** ** * * * * * **
47941592 TGAAGAC-ACAATGGTAAATCTTACTTCCCTGGTAGTGTAGTGGAACAA-ATTGAAGTTACAACG
254 TGAAG-CTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAAGATTGAAGCCACAACG
* * * * * *
47941655 ATGAATCTT-GTTCCAC-AATATTGCAATTAAAA
317 GTGAATCTTACTTCC-CTGACAGTGCAATGAAAA
* ** * * ** * * * * * * *
47941687 AGATTAAAGCCCCAACAGTGAATCTTACTTAACTGTCAGTACAGTGGAGCAGATTAAAGATACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * ** *
47941752 CGGTGAATCTTGCTTCCCCGGACATAGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACA
66 CGGCGAATCTTGCTT-CCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * * * * *
47941817 TCCCTAGCGGTGCAGTGGAAAAGATTGAAGCTACAACGGTGAATCATGTTTCCCTGACATTGTAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAA
* ** * * *
47941882 TTGAAAAGATTGAAGCCACAACGATGAATCTTACTTTCCTGGCGGTGCAATGGAGCAGATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * * *
47941947 CTACAACGGTGAATCTGGCTCCCCAGACATTGCAATTAAAAAGTTTGAAGCCACAACGGCGAATC
259 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
*** * * *
47942012 TTACTTCCCTGGTGGTGCAGTGGAAC
324 TTACTTCCCTGACAGTGCAATGAAAA
* * * ** ** * * * * * *
47942038 AGATTAAAGCTACAACGGTGAATCTTATTTCCCTAACATTGTAAT-TAAAAAGATTGAAGCCATA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* * * * * * ** * * ** * * * * **
47942102 ATGGTGAATATTACTTCTCTGGCGGTACAGTGGAATAGATTGGAGCTACAACGGTGAATCTTGTT
65 ACGGCGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * ** * * ** * * * * * * * * ** **
47942167 TCCCCGACATTGTAATTAAAAAGATTGAATCCACAATGGCAAATCTTACTTCCCTGGCGGTGCCG
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAA
* * * ** * ** ** * * *
47942232 TGGAACAA-ATTGAAGCTACAATAGCGAATCTTGC-TCCAC-AACATTGCAAAT-AAAAAGATTG
194 T-TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC-CTGGCGGTGC-AGTGGAACAGATTG
* * * * ** * * ** * * * * *
47942293 AAGCCATAATGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAA-ATTGAAGCTACAAC-GTC
256 AAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAAGATTGAAGCCACAACGGT-
* * * * * *
47942356 GAATCTTGCGT-CCTAAACATTGTAATTAAAA
319 GAATCTTACTTCCCT-GACAGTGCAATGAAAA
* * * * * * ** * *
47942387 ATATTGAACCTACAACGGTGAATATTACTTCCATGACGGCACAGTGGAACAGATTCAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * ** * *
47942452 TGGTGAATCTTATTTCCCGGACATTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
66 CGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * ** * *
47942517 CCCTAGCAGTGCAGTGGAGCAGATTGAAGCTAAAACGGTAAATCTGGC-TCTCCCGACATTGTAA
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTC-CCCGACATTGCAA
* * * * *
47942581 TTAAAAAGATTGAAGCCATAATGGAGAATCTTACTTCCCTGGTGGTACAGTGGAACAGATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * **
47942646 CTACAACGGTGCATCTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATC
259 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * *
47942711 TTACTTCCCTGGCGGTGCAGTGGAACA
324 TTACTTCCCTGACAGTGCAAT-GAAAA
* * * ** ** * * * **
47942738 A-ATTGAAGCTATAACGGCGAATCTT-GTTCCATAACATTGCAAT-TAAAAAGATTGAAGCCCCA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* * * * ** * * * ** * * *
47942800 ACGGCGAATCTTACTTAGCTGTCGGTACAGTGGAGCAA-ATTGAAGCTATAACGGTGAATCTTAC
65 ACGGCGAATCTTGCTT-CCCGACATTGCAAT-TAAAAAGATTGAAGCCACAACGGCGAATCTTAC
* * ** * * ** * * * ** * * **
47942864 TTCCCCGACATTGTAATTAAAAAGATTGAAGCGACAACAGTAAATCTTACTT-CCCTAGCGGTGC
128 TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGA-CATTGC
* ** * * * * ** * * ** * ** *
47942928 AGTGGAAAATATTAAAGCTACAACGGTGAATCTTGTTTCCCCGACACTGCAATTAAAAAGATTGA
192 AATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGA
* * * ** ** ** * *
47942993 AGCCACAACGGTGAATCTTACTTT-TCTGGA-GGTGCAATGGAGCAGATTAAAGCTACAACGGTG
257 AGCTACAACGGTGAATCTT-GTTTCCCT-GACATTGCAATTAAAAAGATTGAAGCCACAACGGTG
** * * * *
47943056 AATCTGGCTCCCCCGACATTGCAATTAAAA
320 AATCTTACTTCCCTGACAGTGCAATGAAAA
* * * * * *
47943086 AGTTTGAAG-TCACAACGGTGAATCTTTCTTCTCTGGTGGTGCAGTGGAACAAATTGAAGCTATA
1 AGATTGAAGCT-ACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACA
* ** ** * * * * * *
47943150 ACGGTGAATCTTATTTCCTTAATATTGCATTTTAAAAGACTGAAGCCACAATGACGAATCTTACT
65 ACGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* * * * * * *
47943215 TCTCTGGCGGTGCAGTGGAATAGGTTGGAGCTACAACTGCGAATCTTGC-TCCACGACATTGTAA
129 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAA
* * * *
47943279 TTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAG
194 TTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* * * * * * *
47943344 CTACAATGGTGAATCTTGTTTCCCCGACATTGGAATTAAAAAGATTGAAGACACAATGGAGAATA
259 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * * *
47943409 TTACTTTCCTGGCGGTGCAGTGGAACA
324 TTACTTCCCTGACAGTGCAAT-GAAAA
* * * ** ** * * * * *
47943436 A-ATTGAAGTTACAACGGTGAATCTTACAT-CCTAAACATTGTAAT-TAAAAAGATTGAACCTAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GGCGGTGCAGTGGAACAA-ATTGAAGCTAC
* * * ** * * * * * * * *
47943498 AACGCCGAATCTTACTTCCCTAGCGGTAC-AGTAGAACAGATTCAAGCTAAAATGGTGAATCTTA
64 AACGGCGAATCTTGCTTCCCGA-CATTGCAATTA-AAAAGATTGAAGCCACAACGGCGAATCTTA
* * * ** * * ** * * * * * **
47943562 TTTCCCCGACTTTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT-CCCTAGCGGTG
127 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGA-CATTG
* ** ** * * * * * ** * ** *
47943626 CAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGC-TCGGCC-GACATTGCAATTAAAAAGAT
191 CAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC--CCTGGCGGTGCAGTGGAACAGAT
* ** * ** * ** * * *
47943689 TGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGGTTGAAGCTACAACGGT
254 TGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGT
* ** * * *
47943754 TAATCTTGTTTCCCCGACATTGCAATTAAAA
319 GAATCTTACTTCCCTGACAGTGCAATGAAAA
* ** * * *
47943785 AGATTGAAGCCACAATAGCGAATATTACTTCCCTGGCAGTGCAGTGGAACAAATTAAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * *
47943850 CGGTGAATCTTAC-TCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
66 CGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * *
47943914 CCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTACTTCCCCGACATTGTAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * * *
47943979 TAAAAATATTGAAGCCACAACAGTC-AATCTTACTTCCCTGGCGGTACAGTGGAACAGAATGAAG
195 TAAAAAGATTGAAGCCACAAC-GGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
* **
47944043 CTACAACGGTGAATCCTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACATTGAATC
259 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * **
47944108 TTACTTCCCTGGCGGTGCAATGGAGC
324 TTACTTCCCTGACAGTGCAATGAAAA
* * * * *
47944134 ATATTGAAGCTACAACGGTGAATCTTACTTCTCTGGCGGTGCAGTAGAGCAAATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
** * * * *
47944199 CGATGAATCTTGCTTCACGGCATAGCAATTATAAAGATTGAAGCCACAACGGCGAATCTTACTTC
66 CGGCGAATCTTGCTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC
* ** * * *
47944264 CTTGGCGGTTTAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATT
131 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATT
** * *
47944329 AAAAAGATTGAAGCCACAACAACGAATCTTACTTCCTTGGCGGTGTAGTGGAACAGATTGAAGCT
196 AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* * *
47944394 ACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAGAGATTGAAGCCACAATGGCGAATCTT
261 ACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTT
* * *
47944459 ACTTCCCT-AGCGGTGCAGTGGAACA
326 ACTTCCCTGA-CAGTGCAAT-GAAAA
* * * ** * * * *
47944484 A-ATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTGCAAT-TAAAAATATTGAAGCCAC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAA-ATTGAAGCTAC
* * * * * * * ** ** * * *
47944545 AACGGTGAATCATACTTCCCTGGCGTTACAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGC
64 AACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC
*** ** * * ** * * * * * * **
47944610 TTCCCCAACAATGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCA
128 TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCA
* ** * * * ** * ** * * *
47944675 GTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAATGATTGA
193 ATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGA
* ** ** * * * * * * * * *
47944739 AGCCACAATAGTGAATCTTACTTCCTTGGCAGTGCAGTGGAATAA-ATTAAAGCTACAACGGCGA
257 AGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAAGATTGAAGCCACAACGGTGA
* *
47944803 ATCTTAC-TCCAC-GACATTGCAATTAAAA
321 ATCTTACTTCC-CTGACAGTGCAATGAAAA
* * ** *
47944831 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAGTAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * *
47944896 CGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTT
66 CGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * ** * * *
47944961 CCCTGGCGGTACAGTGGAACAGATTGAAGCTACAATGGTAAATCTTGTTTGCCTGACATTGCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* ** * * *
47945026 TAAAAAGATTGAAACCACAACATCGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * ** * * * ** * * **
47945091 TACAACGGTGAATCTTATTTCTCTGGCGGTGTAGTGGAGCAA-ATTGAAGCTACAATGACGAATC
260 TACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAAGATTGAAGCCACAACGGTGAATC
* * * *
47945155 TTGC-TCTAC-GACATTGCAATTAAAA
324 TTACTTC-CCTGACAGTGCAATGAAAA
* * * ** * * *
47945180 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTTTAGTGGAGCAGATTGAAGTTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * **
47945245 CGGCAAATCTTGCTTTCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTT
66 CGGCGAATCTTGC-TTCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * *
47945310 CCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * *
47945375 TAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * *
47945440 TACAACGGCGAATCCTG-CTCCAC-GACATTGTAATTAAAAATATTGAAGCCACAACGGTGAATC
260 TACAACGGTGAATCTTGTTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATC
* * * * * **
47945503 TTACTTCCCTGGCGGTACAGTGGAGC
324 TTACTTCCCTGACAGTGCAATGAAAA
* * *** ** * * * * *
47945529 AGATTGAAGCTACAACGGCAAATCTTGCTTCCCCAACATTGTAAT-TAAAAAGATTGAAGCCACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
** * * ** * ** * * * **
47945593 ACAACGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTT
65 ACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACT
* ** * * * * * * * * **
47945658 TCCCTGACATTGCAAT-TAAAATGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCA
129 TCCCTGGCGGTGCAGTGGAACA-GATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCA
** *** * ** ** * * * ** * * ** *
47945722 ATGGAGCTGATTGAAGCTACAACGATGAATCTGGCTCCCCCGACCTTGTAATTAAAAAGATTGAA
193 ATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAA
* * * ** * ** * * ** ** *
47945787 GCCACAACTGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGTGAAT
258 GCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAAT
** * * *
47945852 CTTGTTTCCCTGACATTGTAATTAAAA
323 CTTACTTCCCTGACAGTGCAATGAAAA
* * * * * *
47945879 AGATTGAAGCGACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAACCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * *
47945944 TGGCAAATCTTGC-TCCACGACATTGTAATTAAAAAGATTGAAGACACAACGGCAAATCTTACTT
66 CGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * *
47946008 CCCTGGCGGTGTAGTGGAGCAGATTAAAGCTATAACGGCGAATCTGGTTTCCCCGACATTTCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * * * * *
47946073 TAAAAAGATTGAAGCTACAACTGTGAATCTTACTTCCTTGGCAGTGCAGTGGAACAGATTAAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* ** * *
47946138 TACAATGGTGAATCTTGTTTCCCCAACATTGTAATTAAAAAGATTGAAGCCACAGCGGTGAATCT
260 TACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCT
** * * * *
47946203 GGCTCCCCCGACATTGCAATTAAAA
325 TACTTCCCTGACAGTGCAATGAAAA
* ** * * *
47946228 AGATTGAAGCCACAACGATGAATCTTACATCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * * **
47946293 CGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAATATTGAAGCCACAATGGTGAAAATTACTT
66 CGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * *
47946358 CTCTGGCAGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGC-TCCACGACATTGCAAT
130 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAAT
* * *
47946422 TAAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGC
195 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* ** * *
47946487 TACAACGGTGAATCTTGCTTCCCCAACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCT
260 TACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCT
* * * * * *
47946552 TACTTCCTTGGCGGTGCAGTGGAAT
325 TACTTCCCTGACAGTGCAATGAAAA
*
47946577 AGATTGAAGCTACAACGGCGAATCTTGCTTCCC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCC
47946610 AGACATTGCA
Statistics
Matches: 8449, Mismatches: 3184, Indels: 550
0.69 0.26 0.05
Matches are distributed among these distances:
346 1 0.00
347 32 0.00
348 919 0.11
349 5116 0.61
350 1995 0.24
351 207 0.02
352 76 0.01
353 99 0.01
354 4 0.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (349 bp):
AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
CGGCGAATCTTGCTTCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC
CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATT
AAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCT
ACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTT
ACTTCCCTGACAGTGCAATGAAAA
Found at i:47945714 original size:648 final size:644
Alignment explanation
Indices: 47934353--47945753 Score: 3371
Period size: 648 Copynumber: 17.6 Consensus size: 644
47934343 ATAGTGGAAT
* * * * * * *
47934353 AGATTGAAGCTACAATGGCGAATCTTACTTCCCTGACAGTGTAGTGGAACATATTGAAGCTACAA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * ** *
47934418 CAGCGAATCTTACTTCCTCGACATTGTAATTAAAAAGATTGAAATCACAACGGCGAATCTTACTT
66 CGGCGAATCTTAC-TCCACGACATTG-AATTAAAAA-ATTGAAGCCACAACGGTGAATCTTACTT
* * ** **
47934483 TCCTTGCGGTACAGTGGACCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCAAACATTGTAAT
128 CCCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAAT
** ** **
47934548 TAAAAAGATTGAAGGTACAACAGCGAATCTTACTTCCCTGGCGGCACAGT-GAAACAGATACAAG
193 TAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAA-AGATTGAAG
* * *
47934612 C-ACAACGGTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATC
257 CTACAACGGTGAATCTTGTTTCCCTGACATTGCAATT-AAAAGATTGAAGCCACAACAGCGAATC
* * * * * ** * *
47934676 ATACTTCCCTAGTGGTGCAGTGGAGCAGATTGAAGCTACAACGGTGAATCTGGCTCTCCC-GACA
321 TTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACT-TCCCTGGCG
* * * * * * * * * * ** * * ** *
47934740 TTGCAAT-TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCTGGCGGTACAGTGGAACAG
385 GTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTGCTCCAC-GACATTGCAATTAAAAAG
* ** * *** * ** ** * *
47934804 ATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATG
448 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGGGTT-CAGTGGAGCAGATTGAAGCTACAACG
* * * ** *** * * * * * *
47934869 GCAAATCTTACTTCCCTGGCGGTGCCGTGGAACAA-ATTGAAGCTACAATAGCGAATCTTGC-TC
512 GCAAATCTTGCTTCCCCGACATTGTAAT-TAAAAAGATTGAAGCCACAACAACGAATCTTACTTC
** ** * * * * * ** * ** ** *
47934932 CAC-AACATTGCAAAT-AAAAAGATTGAAGCCACAACGGTGAACCTTACTTCCCTGTCGGTATAG
576 C-CTGGCGGTGC-AGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAA
** **
47934995 TGGAGC
639 TTAAAA
* * * **** * * * * *
47935001 AGATTGAAGCTACAATAGTGAATCTTGCTTCCCCGATATTGTAAT-TAAAAAGATTGAAGCCACA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* * * ** * * * * * * *
47935065 ACAGTGAATCTTACTTCC-CTAGCGGTGCAGTGGAACAGATTGAAGCAACAACGGTAAAT-TATG
65 ACGGCGAATCTTAC-TCCACGA-CATTG-AAT-TAAAAAATTGAAGCCACAACGGTGAATCT-TA
* * * ** * * ** * * * * * * * ** *
47935128 TTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGC
125 CTTCCCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGT
** ** * * * ** * * * ** * *
47935193 AATGGAGCAGATTGAAGCGACAACGGTGAATCTGGCTCCCCCGACATTGCAAT-GAGAAAGTTTG
190 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGA-AAAGATTG
* * ** * ** * * * * *
47935257 AAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACAACGGTG
254 AAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAA-AAGATTGAAGCCACAACAGCG
* ** ** * ** * * ** *
47935321 AATCTTATTTCCCTAACATTGCAACT-AAAAAGATTGAAGCCACAATAGTGAATCTTACTTCTCT
317 AATCTTACTTCCCTGGCGGTGCAA-TGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCT
* * * * * * * *
47935385 GGCGGTACAGTGGAATAGATTGAAGCTACAACAGCGAATCTTACTCCACGACATTGTAGTTAAAA
381 GGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTAAAA
** *
47935450 AGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGT-AGGGGAGCAGATTGAAGCTACA
446 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGG-GGT-TCAGTGGAGCAGATTGAAGCTACA
*** * * * * * ***
47935514 ACGATGAATCTTGTTTCTCGGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATCTTACT
509 ACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACT
* * * ** *** * *
47935579 TCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCTTGCATCCAAAATATTGTAA
574 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAA
47935644 TTAAAA
639 TTAAAA
* * * * * * * *
47935650 AGATTGAAGCTACAATGGAGAATCTTACTTCCCTAGCGGAGCAGTGGAATAGATTCAAGCTACAA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * * *
47935715 CGGTGAATCTTATTTCCCCGACACTGTAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTT
66 CGGCGAATCTTA-CTCCACGACATTG-AATTAAAAA-ATTGAAGCCACAACGGTGAATCTTACTT
** ** * * * * * ** * *
47935780 CCCTACCAATGCAATGGAGTAGATTGAATCTACAACGGCGAATCAGGCTCCCCCGACATTGCAAT
128 CCCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAAT
* * * *
47935845 TAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGGTTGAAGC
193 TAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGC
* * * ** *
47935910 TACAATGGGGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATT-AAGGCCACAATGGTGAATC
258 TACAACGGTGAATCTTGTTTCCCTGACATTGCAATT-AAAAGATTGAA-GCCACAACAGCGAATC
* * * * * ******
47935974 TTACTTCCCTGGCAGTGCAGTGGCA-CAAATTGAAGCTACAACAGCGAATCTTAC-TCCAAAATA
321 TTACTTCCCTGGCGGTGCAATGG-AGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTGGCG
* * * ** * * * ** * *** * ** * * ** **
47936037 TTACAATTAAAAAAATTGAAGCCACAATGGCAAATCTTACTTCTTTGTCGGTACAGTGGAGCAGA
385 GTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGC-TCCACGACATTGCAATTAAAAAGA
* * * * * *** * * ** ** * *
47936102 TTGAAGCTATAATGGTGAATCTTGCTTCCCCGATATTTTAATTAAAAAGATTGAAGCCACAACAG
449 TTGAAGCCACAACGGTGAATCTTACTTCCCTG-GGGTTCAGTGGAGCAGATTGAAGCTACAACGG
* * * * ** * * * *** * **
47936167 CGAATCTTACTTCCCTGGCGGTG-CAGTAGAACAGATTGAAGCCACAACGGGGAATCATGTTTCC
513 CAAATCTTGCTTCCCCGACATTGTAATTA-AAAAGATTGAAGCCACAACAACGAATCTTACTTCC
****** * ** * * * * ** ** *
47936231 CCAATATTGCAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCT-AGCGGTGCAATG
577 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGA-CATTGCAATT
* **
47936295 GAGC
641 AAAA
* ** ** * * * ** * * * * *
47936299 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTACAAT-TAA-AAAGTTTGATGCCAC
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAA--TTGAAGCTAC
* * * * * * * *
47936362 AACGGCGAATCTTACTTCTCTGGCGA-TGCAGTGGAACAAATTGAAGCTACAATGGTGAATCTTA
64 AACGGCGAATCTTACTCCAC-GAC-ATTG-AAT-TAAAAAATTGAAGCCACAACGGTGAATCTTA
* ** ** * * ** * * * ** * * * * * * *
47936426 TTTCCCTAACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTCCTGCTCTGGCAGTGC
125 CTTCCCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGT
* ** * * ** * * ** * ** *
47936491 AGTGGAATAGATTGAAGCTACAACAATGAATCTTGC-TCCAC-GACATTGCAATTAAAAAGATTA
190 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCC-CTGGCGGTGCAGTGGAAAAGATTG
** * * * * * ** * *
47936554 AAG-TCACAACGGTGAATCTTACTTCACT-A-GTGGTGTAGTGGAGCAGATTGAAGCTACAACGG
254 AAGCT-ACAACGGTGAATCTTGTTTCCCTGACAT--TGCAAT-TAAAAGATTGAAGCCACAACAG
* * * * ** * ** ** * * * *
47936616 TGAATCTTATTTCCCCGACATTACAATTAAAAAGATTGAAGCCATAATGGTGAATCTTACTTCCC
315 CGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCC
* * * * * *
47936681 TGG-GAGTGTAATGGAACAAATTGAAGCTACAACGGCGAATCTTGCACC-CTAAACATTGTAATT
380 TGGCG-GTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTCCAC--GACATTGCAATT
* * ** * *
47936744 CAAAAGATTGAAG-TACAACGGTGAATCTTACTTCCCTGGTGGCGCAGTGGAACAGATTCAAGCT
442 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGG-GGTTCAGTGGAGCAGATTGAAGCT
* ** ** ** * * **
47936808 GCAATAGTGAATCTTATTTCCCAGACATTGTAATTAAAAATATTGAAGCCACAACGGCGAATCTT
506 ACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTT
** * * * * * * * * * *
47936873 ACTTTTCTAGCGGTGCAGTGGAGCAAATTGAAGCCACAACGGCGAATCTGGCTCCCCCGACATTA
571 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTG
*
47936938 TAATTAAAA
636 CAATTAAAA
** * **
47936947 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
*** * ** * *
47937012 CGATAAACCTTGTTTCC-CTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACT
66 CGGCGAATCTT-ACTCCAC-GACATTG-AATTAAAAA-ATTGAAGCCACAACGGTGAATCTTACT
* * * * ** ** * *
47937076 TCCCTGGCGGTACAGT-GAAACAAATTGAAGCAACAATGGTGAATCAAGTTTCCCCGACATTGCA
127 TCCCTGGCGGTACAGTGGAGA-AGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTA
* * **
47937140 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGTGGTGCAATGGAGCAGATTGAA
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAA
** * * * * * *
47937205 GCTACAACATTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGCAGCCACAACAGCGAAT
256 GCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATT-AAAAGATTGAAGCCACAACAGCGAAT
* * * * * * * ** *
47937270 CTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAACTACAACGGTGAATCTTATTTCTCTAACA
320 CTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTGGCG
* * * * * * * * * * * * * * ** * ** *
47937335 TTCCAAT-TAAAAAGATCGAAGCCATAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAG
385 GTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTGCTCCAC-GACATTGCAATTAAAAAG
* ** * *** ** ** *
47937399 ATTGAAGCTACAATAGCGAATCTTAC-TCCAC-GACATTGCAGTTAAAAAGATTGAAGCCACAAC
448 ATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGGGTT-CAGTGGAGCAGATTGAAGCTACAAC
* * * * * ** * ** ** * * * * **
47937462 GACGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAATCTACAACGATGAATCTTGTTTC
511 GGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTC
* ** * ** * * * * * * ** ** *
47937527 TC-GGACATTGCAATTAAAAATATTAAAGCCACAATGGCGAATCTTACTTCCCT-AGCGGTGCAG
576 CCTGG-CGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGA-CATTGCAA
* *
47937590 TGGAACA
639 T-TAAAA
* ** * **** ** * * * *
47937597 A-ATTGAAGCTACAACGGTGAATCTT-GTATCCAAAACATTGTAAT-TAAAAAGATTGAAGCTAC
1 AGATTGAAGCCACAATAGTGAATCTTACT-TCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTAC
* * * * *** * * * * * *
47937659 AATGGAGAATCTTAGTTCC-CTAGCGGCGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTTA
64 AACGGCGAATCTTA-CTCCACGA-CATTG-AAT-TAAAAAATTGAAGCCACAACGGTGAATCTTA
* * * ** * * ** * * * * * * * *
47937723 TTTCCCCGACACTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTT-CCCTACCAATA
125 CTTCCCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGA-CATTG
* * ** ** * * * ** * * * ** * ** *
47937787 CAGTGGAGTAGATTGAATCTACAACGGCGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTA
189 TAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTG
* ** * ** * * * * * ** *
47937852 AAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGA
254 AAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAGATTGAAGCCACAACAGCGA
** * **** ** ** * * * *
47937917 ATCTTGTTTCCCCGATATTGCAATTAAAAAGATT-AAGGCCACAATGGCGAATCTTACTTCCCTG
318 ATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAA-GCTACAACGGTGAATCTTACTTCCCTG
* * * * * * *
47937981 GCAGTGCAGTGGCACAAATTGAAGCTACAACAGCGAATCTTGCTCCACAATATTGTAATTAAAAA
382 GCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTAAAAA
** * * * * *
47938046 GATTGAAGCCACAACGGCAAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAAGTTATAAT
447 GATTGAAGCCACAACGGTGAATCTTACTTCCCTG-GGGTTCAGTGGAGCAGATTGAAGCTACAAC
** *
47938111 GGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTC
511 GGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTC
* * * * * * *
47938176 TCTGGCGGTGCAGTAGAACAGATTGAAGCTACAATGGGGAATCATGTTTCCCCGACATTGTAATT
576 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATT
47938241 AAAA
641 AAAA
** * * * * *
47938245 AGATTGAAGCCACAGCAGTGAATCTTACTTCTCTAGCGGTGCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* ** *
47938310 CGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
66 CGGCGAATCTTACT-CCACGACATTG-AATTAAAAA-ATTGAAGCCACAACGGTGAATCTTACTT
* * * * ** * *
47938375 CCCTGGAGGTGCAGTGGA-ACAGGTTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTGCAA
128 CCCTGGCGGTACAGTGGAGA-AGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAA
** * *
47938439 TTAAAAAGATT-AAGGCCACAATGGCAAATCTTACTTCCCTAGCGGTGCAGTGGAACAA-ATTGA
192 TTAAAAAGATTGAA-GCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAA-AAGATTGA
* * * * *
47938502 AGCTACAACAGCGAATCTTG-CTCCAC-AACATTGCAATTAAAAAGATTGAAGCCACAAC-GACA
255 AGCTACAACGGTGAATCTTGTTTCC-CTGACATTGCAATT-AAAAGATTGAAGCCACAACAG-CG
* * ** * * * ** *
47938564 AATCTTACTTCCCTGTCGGTACTGTGGAGCAGATTGAAGCTATAATGGTGAATCTTGGTTCCCCG
317 AATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTG
* ** * * * * * * * * * * * * ** *
47938629 ACATTGTAAT-TAAAAAGATTGATGCCACAACAGCGAATCTTACTTCGCTGGCGGTGC-AGTAGA
382 GCGGTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTGCTCCAC-GACATTGCAATTA-A
* * * * ** * *** * ** ** *
47938692 ACAGATTGAAGCTACAATGGTGAATCGTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCAC
444 AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGGGTT-CAGTGGAGCAGATTGAAGCTAC
* * ** * ** ** ** ** * ***
47938757 AACAGC-AATCTTACTTCCTTGGCGGTCCAATGGAGCAGATTGAAGCTACAACGGTGAATC-TAG
508 AACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTA-
* ** * ** * * * * ** * ** *
47938820 CTCTCCC-GACATTGCAATTAAAAAGTTTGAAGCCACAACAGCAAATCGTACTTCCCTGGCGA-T
572 CT-TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGAC-ATT
* * *
47938883 GCAGTGGAACA
635 GCAAT-TAAAA
* ** * ** ** * * * *
47938894 A-ATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCAAT-TAAAAAGATTGAAGCCACA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
** * * * * ** * * * * * ** *
47938957 ATAGAGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACAATGAATCTTGC-
65 ACGGCGAATCTTACTCCAC-GACATTG-AAT-TAAAAAATTGAAGCCACAACGGTGAATCTTACT
* ** * ** * * * * * * *
47939021 TCCAC-GACATTACAATTAAAAAGATTAAAGTTACAACGGCGAATCTTACTT-CCCTA-GTGGTG
127 TCC-CTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACAT--TG
* ** ** * * * * * * ** * **
47939083 TAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTATTTCCCCGACATTGCAATTAAAAAGATTG
189 TAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTG
* * ** ** * * * * *
47939148 AAGCCACAATGGTGAATCTTACTTCCCTGGTAGTGTAGTGGAACAA-ATTGAAGCTACAACAGCG
254 AAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAA-AAGATTGAAGCCACAACAGCG
* * ***** * ** ** * *
47939212 AATCTTGC-ACCCTAAATATTGTAATTAAAAAGATTGAAGCTACAACGGTAAATCTTACTTCCCT
317 AATCTTACTTCCCT-GGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCT
* * * ** ** * *
47939276 GGCGGCGCAGTGGAACAGATTCAAGCTACAATAGTGAATCTTATTTCCCCGACATTACAATTAAA
381 GGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTT-GCTCCACGACATTGCAATTAAA
* * * *
47939341 AATATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACA
445 AAGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GGGGTTCAGTGGAGCAGATTGAAGCTACA
* * * * ** *** *
47939406 ATGGCGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTATT
509 ACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACT
* * * * *
47939471 TCCCTGGAGGTGCAGTGGAACAGGTTAAAGCTACAACGGTAAACCTTGTTTCCCTGACATTGCAA
574 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAA
47939536 TTAAAA
639 TTAAAA
* * * * *
47939542 AGATT-AATGCCACAATGGTGAATCTTATTTCCCTGGCTGTGCAGTGAAACAAATTGAAGCTAGA
1 AGATTGAA-GCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACA
* * *
47939606 ACGGTGAATCTTGCTCCACAACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
65 ACGGCGAATCTTACTCCACGACATTG-AATTAAAAA-ATTGAAGCCACAACGGTGAATCTTACTT
* * * * * *
47939671 CCCTGTCGGTACAGCGGAGTAGATTGAAGCTACAAC-GCTGAATCTTGCTTCCCCGATATTATAA
128 CCCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGC-AAATCTTGCTTCCCCGACATTGTAA
* *
47939735 TTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCTCC-GGCGGTGCAGTGGAATAGATTGAA
192 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTC-CCTGGCGGTGCAGTGGAAAAGATTGAA
* *
47939799 GCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATGAAAAAGATTGAAGCCACAACAGCGAAT
256 GCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAGATTGAAGCCACAACAGCGAAT
* * * * * ** * *
47939864 CTTACTTCCCTGGAGATGCAATAATAGAGCAGATTGAAGCTACAACGGTGACTCTGGCTCCCCCG
320 CTTACTTCCCTGGCGGTGC---AATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTG
* ** * * * * * * * ** * *
47939929 ACATTGTAAT-TAA-AATGTATGAAGCCACAACGGTGAATCTTACTTCC-CTAGCGGTGCAGTGA
382 GCGGTGCAGTGGAACAA-AT-TGAAGCTACAACGGTGAATCTTGC-TCCACGA-CATTGCAATTA
* * * **** * * ** ** * *
47939991 AACAGATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGTAATTAAAAAAATTGAAGCCA
443 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGGGTT-CAGTGGAGCAGATTGAAGCTA
* * * * * * ** *** ** * * * *
47940056 TAATGG-AGAATCTTACTTCTCTGGCGGTGCGGTGGAACAGATTGAAGCTACAACAGCAAATCTT
507 CAACGGCA-AATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTT
* * * ** * * ** * * * * ** **
47940120 GC-TGCCTGACATTACAATTAAAAAGATTAAAG-TACAACAGCGAATCTTACTTCCCT-AGCGGT
571 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGA-CATT
* * **
47940182 G-TAGTAGAGC
635 GCAATTA-AAA
** * * ** * * ** * * * * *
47940192 AGGCTGAAGCTACAATGGTGAATCTTGTTTCCCCGACATTTCAAT-TAAAAAGATTGAAGCCACA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* * * * ** * * * * *
47940256 ATGGCGAATCATAATTCC-CTAGCGGTGTAGTGGAACAAATTGAAGCTACAACGGCGAATCTTAC
65 ACGGCGAATC-TTACTCCACGA-CATTG-AAT-TAAAAAATTGAAGCCACAACGGTGAATCTTAC
** * * ** **
47940320 TTCCCTGGCGGCGCAGTGGA-ACAGATTCAAGCTACAATGGTGAATCTTATTTCCCCGACATTGT
126 TTCCCTGGCGGTACAGTGGAGA-AGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGT
* * **
47940384 AATTAAAAAGATTGAAGCCACAAC-GACGAATCTTCCTTCCCTAGCGGTGCAGTGGAGTAGATTG
190 AATTAAAAAGATTGAAGCCACAACAG-CGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTG
** * * * * * *
47940448 AAGCTACAACGGCAAATCTAGCTCCCCCGACATTGCAATTAATAAGATTGAAGCCACAACGGTGA
254 AAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAA-AAGATTGAAGCCACAACAGCGA
* * ** * * ** *
47940513 ATCTTACTTCCCTGGTGGTGCAGTGGAATATGTTGAAGCTACAATGGTGAATCTTGTTTCCC-GA
318 ATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTGG
** * * * * * * * * * ** * *
47940577 CATTGCAAT-TAAAAAGATTAAAGCCACAATGGCGAATCTTACTTCC-CTAGCGGTGCAGTGGAA
383 CGGTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTGC-TCCACGA-CATTGCAAT-TAA
* * * *** * * ** ** *
47940640 AAA-ATTGAAGCTACAACGGTGAATCTTGC-TCTAC-GACATTGTAATTAAAAAGATTGAAGCCA
444 AAAGATTGAAGCCACAACGGTGAATCTTACTTC-CCTGGGGTT-CAGTGGAGCAGATTGAAGCTA
* * * * * * ** ** * * *
47940702 CAATGGCGAATCTTACTTCCCTGGC--GGTACAGTGGAGCAGATTGAAACCACAACGACAAATCT
507 CAACGGCAAATCTTGCTTCCCCGACATTGTA-A-TTAAAAAGATTGAAGCCACAACAACGAATCT
* * * ** * * ** * * * * ** * **
47940765 TGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTT-ACTCTCCTGGCGG
570 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTC-CCTGACAT
* * ** *
47940829 TGTAGTGGAAC
634 TGCAATTAAAA
* * ** ** * * ** * * *
47940840 AGATCGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAAT-TAAAAAGATTGAAGCTACA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* * * ** * * * ** * * **
47940904 ACTGCGAGTCTTACTTCC-CTGGCGGTGCAA-TAGAGCATATTGACGGTACAACAGTGAAGCTGG
65 ACGGCGAATCTTAC-TCCAC-GACATTG-AATTA-A-AAAATTGAAGCCACAACGGTGAATCTTA
* *** ** * * ** * * * * ** * * ** *
47940967 CTCCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACTGCGAATCTTATTTCCCTGGCGGTGC
125 CTTCCCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGT
* ** * * * ** * ** * ** * * ** * *
47941032 AGTGGAACAGATTGAAGCTACAACGGATAATTTTGTTTCCCTGACATTGTAATTAAAAATATTAA
190 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGA
* * ** * * ** * * * * *
47941097 AGCCACAATGGTGAATCTTACTTCCCCGGCGGTGCAGTGAAACAGATTGAAGCTACAACGGTGAA
255 AGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAA-AGATTGAAGCCACAACAGCGAA
* ** ** * * ** * * * * *
47941162 TCTTGC-TCCAC-AACTTTGTAATGAAAAACATTAAAGCCACAACGGTAAATCTTACTTCCCTAG
319 TCTTACTTCC-CTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTGG
** * * * * * *
47941225 CGGTATAGTAGAGCAGATTGAAGCTACAACGGTAAATCTTGCTTCCCCGACATTGTAATTAAAAA
383 CGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGC-TCCACGACATTGCAATTAAAAA
* *** * * * *
47941290 TATTGAAGCCACAACAACGAATCATACTTCCATGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
447 GATTGAAGCCACAACGGTGAATCTTACTTCCCTGG-GGTTCAGTGGAGCAGATTGAAGCTACAAC
** * * * **
47941355 GGTGAATCTTGTTTCCCTGACATTGTAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTC
511 GGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTC
* * * * *
47941420 CCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGCGAA-CTAGCTCTCCC-GACATTGCAAT
576 CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-TTTCCCTGACATTGCAAT
47941483 TAAAA
640 TAAAA
* ** * * * * * * * * *
47941488 AGTTTGAAGCCACAACGGCGAATCTTATTTCCTTCGCGATACAGTAGAACAGATTAAAGCTACAA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * * * * *
47941553 CAGTGAATCTGGT-TTCCCCGATATTGCAATTAAAAAGATTGAAGACACAATGGTAAATCTTACT
66 CGGCGAATCT--TACTCCACGACATTG-AATTAAAAA-ATTGAAGCCACAACGGTGAATCTTACT
** ** * * *** * * * *
47941617 TCCCTGGTAGTGTAGTGGA-ACAAATTGAAGTTACAACGATGAATCTTG-TTCCACAATATTGCA
127 TCCCTGGCGGTACAGTGGAGA-AGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTA
* * * ** * * * ** *
47941680 ATTAAAAAGATTAAAGCCCCAACAGTGAATCTTACTTAACTGTCAGTACAGTGGAGCAGATTAAA
191 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAA
* * * * * *
47941745 GATACAACGGTGAATCTTGCTTCCCCGGACATAGTAATTAAAAAGATTGAAGCCACAACAACGAA
256 GCTACAACGGTGAATCTTG-TTTCCCTGACATTGCAATT-AAAAGATTGAAGCCACAACAGCGAA
* * * ** * * ** *
47941810 TCTTACATCCCTAGCGGTGCAGTGGAAAAGATTGAAGCTACAACGGTGAATCATGTTTCCCTGAC
319 TCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTGGC
** * * * * * * * * ** ** **
47941875 ATTGTAATTGAA-AAGATTGAAGCCACAACGATGAATCTTACTTTCC-TGGCGGTGCAATGGAGC
384 GGTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTGC--TCCACGACATTGCAATTAAAA
* ** * * *** * ** ** * *
47941938 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCAGACATTGCAATTAAAAAGTTTGAAGCCACAA
446 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGGGTT-CAGTGGAGCAGATTGAAGCTACAA
* * * **** * * ** * * * *** *
47942003 CGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGATTAAAGCTACAACGGTGAATCTTATTT
510 CGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTT
** ** * * ** * * * * * ** * * ** * *
47942068 CCCTAACATTGTAATTAAAAAGATTGAAGCCATAATGGTGAATATTACTTCTCTGGCGGTACAGT
575 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT
** *
47942133 GGAAT
640 TAAAA
* * ** ** * * ** * * * * * *
47942138 AGATTGGAGCTACAACGGTGAATCTTGTTTCCCCGACATTGTAAT-TAAAAAGATTGAATCCACA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACA
* * * ** ** * * * ** * *
47942202 ATGGCAAATCTTACTTCC-CTGGCGGTGCCGTGGAACAAATTGAAGCTACAATAGCGAATCTTGC
65 ACGGCGAATCTTAC-TCCAC-GACATTG-AAT-TAAAAAATTGAAGCCACAACGGTGAATCTTAC
** ** * * * * * * * * * * **
47942266 -TCCAC-AACATTGCAAAT-AAAAAGATTGAAGCCATAATGGCGAATCTTAC-TCCCCTGGCGGT
126 TTCC-CTGGCGGTAC-AGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCC-GACATT
* * * * * * ** ** * * ** *
47942327 GTAGTGGAACAA-ATTGAAGCTACAAC-GTCGAATCTTGCGT-CCTAAACATTGTAATTAAAAAT
188 GTAAT-TAAAAAGATTGAAGCCACAACAG-CGAATCTTACTTCCCT-GGCGGTGCAGTGGAAAAG
* * ** * * * * * *
47942389 ATTGAACCTACAACGGTGAATATTACTTCCATGAC--GGCACAGTGGAACAGATTCAAGCTACAA
250 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCA-A-T-TAAAAGATTGAAGCCACAA
** * * ** * ** ** * *
47942452 TGGTGAATCTTATTTCCC-GGACATTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACT
312 CAGCGAATCTTACTTCCCTGG-CGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACT
* * * * * * * * *
47942516 TCCCTAGCAGTGCAGTGGAGCAGATTGAAGCTAAAACGGTAAATCTGGCTCTCCCGACATTGTAA
376 TCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTC-CACGACATTGCAA
* * * * *
47942581 TTAAAAAGATTGAAGCCATAATGGAGAATCTTACTTCCCTGGTGGTACAGTGGAACAGATTGAAG
440 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGG-GGTTCAGTGGAGCAGATTGAAG
*** * * * *** *
47942646 CTACAACGGTGCATCTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATC
504 CTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATC
* * * * *
47942711 TTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTATAACGGCGAATCTTG-TTCCATAACAT
569 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACAT
47942775 TGCAATTAAAA
634 TGCAATTAAAA
* ** * ** * * * *
47942786 AGATTGAAGCCCCAACGGCGAATCTTACTTAGCTGTCGGTACAGTGGAGCAAATTGAAGCTATAA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * *
47942851 CGGTGAATCTTACTTCCCCGACATTGTAATTAAAAAGATTGAAGCGACAACAGTAAATCTTACTT
66 CGGCGAATCTTAC-TCCACGACATTG-AATTAAAAA-ATTGAAGCCACAACGGTGAATCTTACTT
* * * * * ** * * *
47942916 CCCTAGCGGTGCAGTGGAAAATATTAAAGCTACAACGGTGAATCTTGTTTCCCCGACACTGCAAT
128 CCCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAAT
* * ** * * ** *
47942981 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTTTCTGGAGGTGCAATGGAGCAGATTAAAGC
193 TAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGC
* * * * * * * *
47943046 TACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGAAGTCACAACGGTGAATCT
258 TACAACGGTGAATCTTGTTTCCCTGACATTGCAATT-AAAAGATTGAAGCCACAACAGCGAATCT
* * * * * * * * * *****
47943111 TTCTTCTCTGGTGGTGCAGTGGAACAAATTGAAGCTATAACGGTGAATCTTATTTCCTTAATATT
322 TACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTGGCGGT
* ** * * * ** * * * * ** * ** * *
47943176 GCATTTTAA-AAGACTGAAGCCACAATGACGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGGT
387 GCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTGCTCCAC-GACATTGCAATTAAAAAGAT
* * * * * *** * * ** ** * *
47943240 TGGAGCTACAACTGCGAATCTTGC-TCCAC-GACATTGTAATTAAAAAGATTGAAGCCACAATGG
450 TGAAGCCACAACGGTGAATCTTACTTCC-CTGGGGTT-CAGTGGAGCAGATTGAAGCTACAACGG
** * * * ** * ** ** * **** **
47943303 TGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAATGGTGAATCTTGTTTCCC
513 CAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCC
* * ** * * ** * * * * * * ** *
47943368 CGACATTGGAATTAAAAAGATTGAAGAC-ACAATGGAGAATATTACTTT-CCTGGCGGTGCAGTG
578 TGGCGGTGCAGTGGAACAGATTGAAG-CTACAACGGTGAATCTT-GTTTCCCTGACATTGCAAT-
* *
47943431 GAACA
640 TAAAA
** ** * ** ** * * * * *
47943436 A-ATTGAAGTTACAACGGTGAATCTTACAT-CCTAAACATTGTAAT-TAAAAAGATTGAACCTAC
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCT-GGCGGTGCAGTGGAACAA-ATTGAAGCTAC
* * ** * * * * * *
47943498 AACGCCGAATCTTACTTCC-CTAGCGGT-ACAGTAGAACAGATTCAAGCTAAAATGGTGAATCTT
64 AACGGCGAATCTTAC-TCCACGA-CATTGA-ATTA-AA-AAATTGAAGCCACAACGGTGAATCTT
* * * * ** * * ** * * *
47943561 ATTTCCCCGACTTTGTA-A-TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT-CCCTAGCG
124 ACTTCCCTGGC--GGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGA-CA
* * * ** ** * * * * * * ** * **
47943623 GTGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGC-TCGGCC-GACATTGCAATTAAAAA
186 TTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTC--CCTGGCGGTGCAGTGGAAAA
* ** * ** * * * * *
47943686 GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGGTTGAAGCTACAAC
249 GATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAGATTGAAGCCACAAC
* ** ** * * ** ** ** * * ** * *
47943751 GGTTAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATAGCGAATATTACTTC
313 AGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTC
* * *
47943816 CCTGGCAGTGCAGTGGAACAAATTAAAGCTACAACGGTGAATCTTACTCCACGACATTGCAATTA
378 CCTGGCGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTA
*
47943881 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTA
443 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGG-GGTTCAGTGGAGCAGATTGAAGCTA
* * *
47943946 CAACGGCAAATCTTACTTCCCCGACATTGTAATTAAAAATATTGAAGCCACAACAGTC-AATCTT
507 CAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACA-ACGAATCTT
* * *
47944010 ACTTCCCTGGCGGTACAGTGGAACAGAATGAAGCTACAACGGTGAATCCTGTTTCCCTGACATTG
571 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTG
47944075 CAATTAAAA
636 CAATTAAAA
* * * * *
47944084 AGATTGAAGCCACAACATTGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* * * * ** * * * * * *
47944149 CGGTGAATCTTACTTCTCTGGCGGTGCAGTAGAGCAAATTGAAGCTACAACGATGAATCTTGCTT
66 CGGCGAATCTTACTCCAC-GACATTGAATTA-A-AAAATTGAAGCCACAACGGTGAATCTTACTT
* * * * * * * * ** * *
47944214 CAC-GGC-ATAGCAAT-TATAAAGATTGAAGCCACAACGGCGAATCTTACTTCCTTGGCGGTT-T
128 CCCTGGCGGTA-CAGTGGA-GAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGAC-ATTGT
* ** ** * * * * * * ** * * **
47944275 AGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGA
190 AATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGA
* *** ** * * ** * * * * * * *
47944340 AGCCACAACAACGAATCTTACTTCCTTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAA
255 AGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAAGATTGAAGCCACAACAGCGAA
** * ** ** * * * * *
47944405 TCTTGTTTCCCTGACATTGCAATTAAAG-AGATTGAAGCCACAATGGCGAATCTTACTTCCCTAG
319 TCTTACTTCCCTGGCGGTGCAA-TGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTGG
*
47944469 CGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTAAAAAT
383 CGGTGCAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTAAAAAG
* *
47944534 ATTGAAGCCACAACGGTGAATCATACTTCCCTGGCGTTACAGTGGAGCAGATTGAAGCTACAACG
448 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGGGTT-CAGTGGAGCAGATTGAAGCTACAACG
* * *
47944599 GCAAATCTTGCTTCCCCAACAATGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCC
512 GCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCC
47944664 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTA
577 CTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTA
47944729 AAA
642 AAA
* * * * *
47944732 TGATTGAAGCCACAATAGTGAATCTTACTTCCTTGGCAGTGCAGTGGAATAAATTAAAGCTACAA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
*
47944797 CGGCGAATCTTACTCCACGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTC
66 CGGCGAATCTTACTCCACGACATTG-AATTAAAAA-ATTGAAGCCACAACGGTGAATCTTACTTC
* * *
47944862 CCTGGTGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATT
129 CCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATT
* * *
47944927 AAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCT
194 AAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCT
* * * * *
47944992 ACAATGGTAAATCTTGTTTGCCTGACATTGCAATTAAAAAGATTGAAACCACAACATCGAATCTT
259 ACAACGGTGAATCTTGTTTCCCTGACATTGCAATT-AAAAGATTGAAGCCACAACAGCGAATCTT
* *
47945057 ACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTATTTCTCTGGCGGTG
323 ACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTGGCGGTG
* * * ** *
47945122 TAGTGGAGCAAATTGAAGCTACAATGACGAATCTTGCTCTACGACATTGCAATTAAAAAGATTGA
388 CAGTGGAACAAATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGA
* *
47945187 AGCCACAACGGTGAATCTTACTTCCCTGGTGGTTTAGTGGAGCAGATTGAAGTTACAACGGCAAA
453 AGCCACAACGGTGAATCTTACTTCCCTGG-GGTTCAGTGGAGCAGATTGAAGCTACAACGGCAAA
* *
47945252 TCTTGCTTTCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCTTGGC
517 TCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGC
47945317 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAA
582 GGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAA
* * *
47945380 AGATTGAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAA
1 AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
* *
47945445 CGGCGAATCCTGCTCCACGACATTGTAATTAAAAATATTGAAGCCACAACGGTGAATCTTACTTC
66 CGGCGAATCTTACTCCACGACATTG-AATTAAAAA-ATTGAAGCCACAACGGTGAATCTTACTTC
* *
47945510 CCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCAACATTGTAATT
129 CCTGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATT
* *
47945575 AAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCT
194 AAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCT
47945640 ACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAATGATTGAAGCCACAACAGCGAATCTT
259 ACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAA-GATTGAAGCCACAACAGCGAATCTT
*
47945705 ACTTCCCTGGCGGTGCAATGGAGC-TGATTGAAGCTACAACGATGAATCT
323 ACTTCCCTGGCGGTGCAATGGAGCAT-ATTGAAGCTACAACGGTGAATCT
47945754 GGCTCCCCCG
Statistics
Matches: 7723, Mismatches: 2727, Indels: 606
0.70 0.25 0.05
Matches are distributed among these distances:
644 1 0.00
645 3 0.00
646 88 0.01
647 401 0.05
648 3243 0.42
649 3231 0.42
650 343 0.04
651 256 0.03
652 157 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (644 bp):
AGATTGAAGCCACAATAGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTACAA
CGGCGAATCTTACTCCACGACATTGAATTAAAAAATTGAAGCCACAACGGTGAATCTTACTTCCC
TGGCGGTACAGTGGAGAAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAA
AAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTAC
AACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAGATTGAAGCCACAACAGCGAATCTTACT
TCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACGGTGAATCTTACTTCCCTGGCGGTGCAG
TGGAACAAATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCAATTAAAAAGATTGAAGC
CACAACGGTGAATCTTACTTCCCTGGGGTTCAGTGGAGCAGATTGAAGCTACAACGGCAAATCTT
GCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTG
CAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAA
Found at i:47947082 original size:399 final size:397
Alignment explanation
Indices: 47940294--47947384 Score: 5334
Period size: 399 Copynumber: 17.8 Consensus size: 397
47940284 AGTGGAACAA
* * * * * * *
47940294 ATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
** * * ** *
47940359 GTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGACGAATCTTCCTTCC
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * ** ** * *
47940424 CTAGCGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATCTAGCTCCCCCGACATTGCAATTA
131 C-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA
* * * *
47940489 ATAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAATATG-TTGAAGCT
195 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACA-GATTGAAGCT
* *
47940553 ACAATGGTGAATCTTGTTT-CCCGACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATCTT
259 ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTT
* * * * *
47940617 ACTTCCCTAGCGGTGCAGTGGAAAAAATTGAAGCTACAACGGTGAATCTTGCTCTACGACATTGT
324 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTC-CCGACATTGC
47940682 AATTAAAAAG
388 AATTAAAAAG
* * * * ** * *
47940692 ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAACCACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
*** * * * *
47940757 ACAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTCTC
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACT-TC
* * * * *
47940822 CTGGCGGTGTAGTGGAACAGATCGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTA
130 CCGGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA
* * * * * * * * *
47940887 AAAAGATTGAAGCTACAACTGCGAGTCTTACTTCCCTGGCGGTGCAA-TAGAGCATATTGACGGT
195 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTG-AAGTGGAACAGATTGAAGCT
* * * * * *
47940951 ACAACAGTGAAGCTGGCTCCCCCAACATTGCAATTAAAAAGATTGAAGCCACAACT-GCGAATCT
259 ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA-TGGCGAATCT
* * *
47941015 TATTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGAT-AATTTTGTTTCCCTGACAT
323 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGG-TGAATCTTG-CTCCC-GACAT
* *
47941079 TGTAATTAAAAAT
385 TGCAATTAAAAAG
* * * *
47941092 ATTAAAGCCACAATGGTGAATCTTACTTCCCCGGCGGTGCAGTGAAACAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
* * * * * * * *
47941157 GTGAATCTTGC-TCCACAACTTTGTAATGAAAAACATTAAAGCCACAACGGTAAATCTTACTTCC
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * * * * *
47941221 CTAGCGGTATAGTAGAGCAGATTGAAGCTACAACGGTAAATCTTGCTTCCCCGACATTGTAATTA
131 C-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA
* *** * * *
47941286 AAAATATTGAAGCCACAACAACGAATCATACTTCCATGGCGGTGCAGTGGAACAGATTGAAGCTA
195 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAGCTA
* * * *
47941351 CAACGGTGAATCTTGTTTCCCTGACATTGTAATTAAAAATATTGAAGCCACAACGGCGAATCTTA
260 CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTA
* * * *
47941416 CTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAACGGCGAA-CTAGCTCTCCCGACATTGC
325 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG--CTCCCGACATTGC
47941480 AATTAAAAAG
388 AATTAAAAAG
* * * * * * * * *
47941490 TTTGAAGCCACAACGGCGAATCTTATTTCCTTCGCGATACAGT-AGAACAGATTAAAGCTACAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGA-AAAAGATTGAAGCTACAAC
* * * * * * * *
47941554 AGTGAATCTGGTTTCCCCGATATTGCAATTAAAAAGATTGAAGACACAATGGTAAATCTTACTTC
65 GGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
** * * * * * * * *
47941619 CCTGGTAGTGTAGTGGAACAAATTGAAGTTACAACGATGAATCTTG-TTCCACAATATTGCAATT
130 CC-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATT
* * * ** * * * * *
47941683 AAAAAGATTAAAGCCCCAACAGTGAATCTTACTTAACTGTCAGT-ACAGTGGAGCAGATTAAAGA
194 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGA-AGTGGAACAGATTGAAGC
* * * ***
47941747 TACAACGGTGAATCTTGCTTCCCCGGACATAGTAATTAAAAAGATTGAAGCCACAACAACGAATC
258 TACAACGGTGAATCTTGTTTCCCC-GACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATC
* * * * *
47941812 TTACATCCCTAGCGGTGCAGTGGAAAAGATTGAAGCTACAACGGTGAATCATGTTTCCCTGACAT
322 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-CTCCC-GACAT
* *
47941877 TGTAATTGAAAAG
385 TGCAATTAAAAAG
* * * * **
47941890 ATTGAAGCCACAACGATGAATCTTACTTTCCTGGCGGTGCAATGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
* * * *
47941955 GTGAATCTGGC-TCCCCAGACATTGCAATTAAAAAGTTTGAAGCCACAACGGCGAATCTTACTTC
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
* * * ** ** *
47942019 CCTGGTGGTGCAGTGGAACAGATTAAAGCTACAACGGTGAATCTTATTTCCCTAACATTGTAATT
130 CC-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATT
* * * * * *
47942084 AAAAAGATTGAAGCCATAATGGTGAATATTACTTCTCTGGCGGT-ACAGTGGAATAGATTGGAGC
194 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGA-AGTGGAACAGATTGAAGC
* * *
47942148 TACAACGGTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAATCCACAATGGCAAATCT
258 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCT
* * ** * *
47942213 TACTTCCCTGGCGGTGCCGTGGAACAAATTGAAGCTACAATAGCGAATCTTGCTCCACAACATTG
323 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCC-CGACATTG
*
47942278 CAAATAAAAAG
387 CAATTAAAAAG
* * * * * *
47942289 ATTGAAGCCATAATGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAA-ATTGAAGCTACAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGT-GAAAAAGATTGAAGCTACAAC
* ** * * *
47942353 -GTCGAATCTTGCGTCCTAAACATTGTAATTAAAAATATTGAA-CCTACAACGGTGAATATTACT
65 GGT-GAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCC-ACAACGGTGAATCTTACT
* * ** * * * ** * *
47942416 TCCATGACGGCACAGTGGAACAGATTCAAGCTACAATGGTGAATCTTATTTCCCGGACATTACAA
128 TCC-CGGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAA
* * * *
47942481 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCAGTGCAGTGGAGCAGATTGAAG
192 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAG
* * ** * * *
47942546 CTAAAACGGTAAATC-TGGCTCTCCCGACATTGTAATTAAAAAGATTGAAGCCATAATGGAGAAT
257 CTACAACGGTGAATCTTGTTTC-CCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAT
* * * * *
47942610 CTTACTTCCCTGGTGGTACAGTGGAACAGATTGAAGCTACAACGGTGCATCTGGTTTCCCCGACA
321 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-CT-CCCGACA
47942675 TTGCAATTAAAAAG
384 TTGCAATTAAAAAG
* ** * *
47942689 ATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTATAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGT-GAAAAAGATTGAAGCTACAAC
* * * *
47942753 GGCGAATCTTG-TTCCAT-AACATTGCAATTAAAAAGATTGAAGCCCCAACGGCGAATCTTACTT
65 GGTGAATCTTGCTTCC-TCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
* * * * * * * * * *
47942816 AGCTGTCGGTACAGTGGAGCAAATTGAAGCTATAACGGTGAATCTTACTTCCCCGACATTGTAAT
129 -CCCGGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAAT
* * * * * * * *
47942881 TAAAAAGATTGAAGCGACAACAGTAAATCTTACTTCCCTAGCGGTGCAGTGGAAAATATTAAAGC
193 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAGC
* * *
47942946 TACAACGGTGAATCTTGTTTCCCCGACACTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCT
258 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCT
** * * * * *
47943011 TACTTTTCTGGAGGTGCAATGGAGCAGATTAAAGCTACAACGGTGAATCTGGCTCCCCCGACATT
323 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCT--CCCGACATT
47943076 GCAATTAAAAAG
386 GCAATTAAAAAG
* * * * * * *
47943088 TTTGAAGTCACAACGGTGAATCTTTCTTCTCTGGTGGTGCAGTGGAACAA-ATTGAAGCTATAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGT-GAAAAAGATTGAAGCTACAAC
** ** * * * * * **
47943152 GGTGAATCTTATTTCCTTAATATTGCATTTTAAAAGACTGAAGCCACAATGACGAATCTTACTTC
65 GGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
* * * * * * * * *
47943217 TCTGGCGGTGCAGTGGAATAGGTTGGAGCTACAACTGCGAATCTTGC-TCCACGACATTGTAATT
130 -CCGGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATT
* * *
47943281 AAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCT
194 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAGCT
* * * * *
47943346 ACAATGGTGAATCTTGTTTCCCCGACATTGGAATTAAAAAGATTGAAGACACAATGGAGAATATT
259 ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTT
* * * * **
47943411 ACTTTCCTGGCGGTGCAGTGGAACAAATTGAAGTTACAACGGTGAATCTTACATCCTAAACATTG
324 ACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TCC-CGACATTG
*
47943476 TAATTAAAAAG
387 CAATTAAAAAG
** * * * * *
47943487 ATTGAA-CCTACAACGCCGAATCTTACTTCCCTAGCGGTACAGT-AGAACAGATTCAAGCTAAAA
1 ATTGAAGCC-ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGA-AAAAGATTGAAGCTACAA
* ** * * *
47943550 TGGTGAATCTTATTTCCCCGACTTTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
64 CGGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
* * * * *
47943615 CCCTAGCGGTGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGC-TCGGCCGACATTGCAA
129 CCC-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTC-CCCGACATTGCAA
* * *
47943679 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGGTTGAAG
192 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAG
* * *
47943744 CTACAACGGTTAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATAGCGAATA
257 CTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATC
* * * *
47943809 TTACTTCCCTGGCAGTGCAGTGGAACAAATTAAAGCTACAACGGTGAATCTTACTCCACGACATT
322 TTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCC-CGACATT
47943874 GCAATTAAAAAG
386 GCAATTAAAAAG
* * **
47943886 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
** * * * * * *
47943951 GCAAATCTTACTTCCCCGACATTGTAATTAAAAATATTGAAGCCACAACAGTCAATCTTACTTCC
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * *
47944016 CTGGCGGTACAGTGGAACAGAATGAAGCTACAACGGTGAATCCTGTTTCCCTGACATTGCAATTA
131 C-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA
** * *
47944081 AAAAGATTGAAGCCACAACATTGAATCTTACTTCCCTGGCGGTGCAA-TGGAGCATATTGAAGCT
195 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTG-AAGTGGAACAGATTGAAGCT
** * * * ** * * * * **
47944145 ACAACGGTGAATCTTACTTCTCTGGCGGTGC-AGTAGAGCAA-ATTGAAGCTACAACGATGAATC
259 ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTA-A-AAAGATTGAAGCCACAATGGCGAATC
* * * * * * * * * * *
47944208 TTGCTTCAC-GGC-ATAGCAAT-TATAAAGATTGAAGCCACAACGGCGAATCTTACTTCCTTGGC
322 TTACTTCCCTGGCGGT-GCAGTGGA-ACAGATTGAAGCTACAACGGTGAATCTTGC-TCC-CGAC
* * * ** **
47944270 GGTT-TAGTGGAGCAG
383 -ATTGCAATTAAAAAG
* ** * * * ** * * * * *
47944285 ATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
** * * * ** * * ** * * **
47944350 ACGAATCTTACTTCCTTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCC
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** ** * * * * * * ** *
47944415 CTGACATTGCAATTAAAGAGATTGAAGCCACAATGGCGAATCTTACTT-CCCTAGCGGTGCAGTG
131 C-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGA-CATTGCAAT-
* * * * * ** ** * *
47944479 GAACAA-ATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTGCAA-TTAAAAATATTGAA
193 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTG-AAGTGGAACAGATTGAA
* * ** * * * * * ** ** * * *
47944540 GCCACAACGGTGAATCATACTTCCCTGGCGTTACAGTGGAGCAGATTGAAGCTACAACGGCAAAT
256 GCTACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAT
* *** ** * * ** * * * * * * *
47944605 CTTGCTTCCCCAACAATGTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCG
321 CTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TCCC-GACA
* * ** *
47944670 GTGCAGTGGAACAG
384 TTGCAATTAAAAAG
* ** * ** * * * * **
47944684 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAATGATTGAAGCCACAATA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
* * * * * * * * * *
47944749 GTGAATCTTACTTCCTTGGCAGTGCAGTGGAATAA-ATTAAAGCTACAACGGCGAATCTTAC-TC
66 GTGAATCTTGCTTCCTCGACATTGCAAT-TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
* ** ** * * * * * **** * *
47944812 CACGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTG
130 C-CGGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATT
* ** * ** * * * ** ** *
47944877 GAGTAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAA-TTAAAAAGATTGAAGC
194 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTG-AAGTGGAACAGATTGAAGC
* * ** * * ** * * ** * * **
47944941 CACAACAGTGAATCTTACTTCCCTGGCGGTACAGTGGAACAGATTGAAGCTACAATGGTAAATCT
258 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCT
** * * ** * ** * * * * * * **
47945006 TGTTTGCCTGACATTGCAATTAAAAAGATTGAAACCACAAC-ATCGAATCTTACTTCCCTGGCGG
323 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGT-GAATCTTGC-TCCC-GACAT
** ** *
47945070 TGCAATGGAGCAT
385 TGCAATTAAAAAG
* * * * ** *
47945083 ATTGAAGCTACAACGGTGAATCTTATTTCTCTGGCGGTGTAGTGGAGCAA-ATTGAAGCTACAAT
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGT-GAAAAAGATTGAAGCTACAAC
**
47945147 GACGAATCTTGC-T-CTACGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
65 GGTGAATCTTGCTTCCT-CGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
* ** * * * ** * *
47945210 CCCTGGTGGTTTAGTGGAGCAGATTGAAGTTACAACGGCAAATCTTGCTTTCCCGACATTGTAAT
129 CCC-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAAT
*** * *
47945275 TAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGC
193 TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAGC
*
47945340 TACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCT
258 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCT
* * * *
47945405 TACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCCTGCTCCACGACATTG
323 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCC-CGACATTG
* *
47945470 TAATTAAAAAT
387 CAATTAAAAAG
* * **
47945481 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
** * * * ***
47945546 GCAAATCTTGCTTCCCCAACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCC
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * *
47945611 CTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTA
131 C-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA
* * * * *
47945676 AAATGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAA-TGGAGCTGATTGAAGCT
195 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTG-AAGTGGAACAGATTGAAGCT
* * * * * *
47945740 ACAACGATGAATCTGGCTCCCCCGACCTTGTAATTAAAAAGATTGAAGCCACAACT-GCGAATCT
259 ACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA-TGGCGAATCT
* * *
47945804 TACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATT
323 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTG-CTCCC-GACATT
*
47945869 GTAATTAAAAAG
386 GCAATTAAAAAG
* * * * * * * *
47945881 ATTGAAGCGACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAACCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
** * * * **
47945946 GCAAATCTTGC-TCCACGACATTGTAATTAAAAAGATTGAAGACACAACGGCAAATCTTACTTCC
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * * * * *
47946010 CTGGCGGTGTAGTGGAGCAGATTAAAGCTATAACGGCGAATCTGGTTTCCCCGACATTTCAATTA
131 C-GGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA
* * * * * *
47946075 AAAAGATTGAAGCTACAACTGTGAATCTTACTTCCTTGGCAGTGCAGTGGAACAGATTAAAGCTA
195 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAGCTA
* * * ** * **
47946140 CAATGGTGAATCTTGTTTCCCCAACATTGTAATTAAAAAGATTGAAGCCACAGCGGTGAATCTGG
260 CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTA
* * * ** * ** * * * * * * **
47946205 CTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGATGAATCTTACATCTCTGGCGGTGC
325 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TC-CCGACATTGC
* ** *
47946270 AGTGGAACAG
388 AATTAAAAAG
* ** * ** * * * * *
47946280 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAATATTGAAGCCACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
** * * * * ** * * * *
47946345 GTGAAAATTACTT-CTCTGGCAGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGC-TC
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC
* ** ** * * * * * * * ** * * *
47946408 CACGACATTGCAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGTAGTG
130 C-CGGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATT
* ** * * *** * * * ** *
47946473 GAGCAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCAAC-ATTACAATTAAAAAGATTGAAGC
194 AAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGA-AGTGGAACAGATTGAAGC
* * ** ** * ** * ** * * *
47946537 CACAATGGTGAATCTTACTTCCTTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGCGAATCT
258 TACAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCT
* * * ** * ** * * * * * **
47946602 TGCTTCCCAGACATTGCAATTAAAAAGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGT
323 TACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGC-TCCC-GACATT
* ** * *
47946667 GCAGTGGAATAT
386 GCAATTAAAAAG
* * * ** * * ** * * * * *
47946679 ATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAACT
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
* * * * ** * ** * * * **
47946744 GTAAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTC-
**** * ** * * * * *
47946809 CCGATATTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTACAATTA
130 CCGGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA
* * *
47946874 AAAAGATTGAAGCCACAACGATGAATCTTACTTCCCTGGTGGTGAAGTGGAACAGATTGAAGTTA
195 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAGCTA
* **
47946939 CAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTA
260 CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTA
* ** *
47947004 CTTCTCTGGTAGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGCTCCACGACATTGCA
325 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCC-CGACATTGCA
*
47947069 ATTAAAAAT
389 ATTAAAAAG
* * **
47947078 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
* * * * *
47947143 TTGAATCTGGCTTCCCCGACATTGCAATTAAAAAGATTGTAGCCACAATGGTGAATCTTACTTCC
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* * * * * **
47947208 TTGGTGGTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCTTGCTTCCTAGACATTGCAATTA
131 -CGGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA
* * *
47947273 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGCTA
195 AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAGCTA
* * ** * * * **
47947338 TAACGATGAATCTTACTTGCCTGACATTGCAGTTAATTAGATTGAAG
260 CAACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAG
47947385 ATAGCAAATC
Statistics
Matches: 5421, Mismatches: 1167, Indels: 209
0.80 0.17 0.03
Matches are distributed among these distances:
397 16 0.00
398 714 0.13
399 3588 0.66
400 1011 0.19
401 92 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (397 bp):
ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGAAAAAGATTGAAGCTACAACG
GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
CGGCGGTGCAATGGAACAGATTGAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAA
AAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGAAGTGGAACAGATTGAAGCTAC
AACGGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTAC
TTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGCTCCCGACATTGCAAT
TAAAAAG
Found at i:47947202 original size:449 final size:448
Alignment explanation
Indices: 47934702--47947308 Score: 4810
Period size: 449 Copynumber: 28.1 Consensus size: 448
47934692 GCAGTGGAGC
* *
47934702 AGATTGAAGCTACAACGGTGAATCTGGC-TCTCCCGACATTGCAATTAAAAAGATTGAAGCCACA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTC-CCCGACATTGCAATTAAAAAGATTGAAGCCACA
* ** *
47934766 ACGGCGAATCTTACTTCTCTGGCGGTACAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTT
65 ACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTT
* ** * * *
47934831 TCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCCG
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAG
* * ** * *
47934896 TGGAACAAATTGAAGCTACAATAGCGAATCTTGC-TCCACAACATTGCAAATAAAAAGATTGAAG
195 TGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAG
* * ** ** *
47934960 CCACAACGGTGAACCTTACTTCCCTGTCGGTATAGTGGAGCAGATTGAAGCTACAA-TAGTGAAT
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGA-TGAAT
* * * *
47935024 CTTGCTTCCCCGATATTGTAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTAGCG
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * ** *
47935089 GTGCAGTGGAACAGATTGAAGCAACAACGGTAAAT-TATGTTTCCCCGACATTGCAATTAAAA
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCT-TGCTT-CCCGACATTGCAATTAAAA
* * * * * ** ** ** *
47935151 AGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCAGATTGAAGCGACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * * * ** * * * * **
47935216 CGGTGAATCTGGCTCCCCCGACATTGCAATGAGAA-AGTTTGAAGCCACAACGGCGAATCTTACT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTG-GAACAGATTGAAGCTACAACGGCGAATCTTGTT
* ** * * * * * * * ** *
47935280 TCCCTGGCGGTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTGCA
130 TCCCTGACATTGCAAT-TAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGC-
* * * * ** * * * * ** * * ** *
47935344 ACT-AAAAAGATTGAAGCCACAATAGTGAATCTTACTTCTCTGGCGGTACAGTGGAATAGATTGA
193 AGTGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGA
* * * * ** * ** * *
47935408 AGCTACAACAGCGAATCTTAC-TCCAC-GACATTGTAGTTAAAAAGATTGAAGCCACAACGACGA
257 AGCCACAACGGTGAATCTTACTTCC-CTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGA
* * * ** * **** ** * * ** *
47935471 ATCTTACTTCCCTGGCGGTGTAGGGGAGCAGATTGAAGCTACAACGATGAATCTTGTTTCTC-GG
321 ATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGG
** * ** * * * * * ** * * *
47935535 ACATTGCAATTAAAAAGATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAAC
386 -CGGTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCCGA-CATTGCAAT-TAAA
47935600 A
448 A
* * * *** * * *
47935601 A-ATTGAAGCTACAACGGCGAATCTTGCATCCAAAATATTGTAATTAAAAAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * * * *
47935665 TGGAGAATCTTACTTCCCTAGCGGAGCAGTGGAATAGATTCAAGCTACAACGGTGAATCTTATTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* * * * * ** * *
47935730 CCCCGACACTGTAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAATGCAAT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
* * ** *
47935795 GGAGTAGATTGAATCTACAACGGCGAATCAGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGC
196 GGAATAGATTGAAGCTACAACGGCGAATCTTGCT-TCCCGACATTGCAATTAAAAAGATTGAAGC
* * * * * **
47935860 CACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGGTTGAAGCTACAATGGGGAATCT
260 CACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATCT
* * *
47935925 TGTTTCCCCGACATTGCAATTAAAAAGATT-AAGGCCACAATGGTGAATCTTACTTCCCTGGCAG
325 TGCTTCCCCGACATTGCAATTAAAAAGATTGAA-GCCACAACGGTGAATCTTACTTCCCTGGCGG
* * ** * ** * *
47935989 TGCAGTGGCACAAATTGAAGCTACAACAGCGAATCTTAC-TCCAAAATATTACAATTAAAA
389 TGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCC-CGACATTGCAATTAAAA
* * ** * *** * ** * * ** ** * *
47936049 AAATTGAAGCCACAATGGCAAATCTTACTTCTTTGTCGGTACAGTGGAGCAGATTGAAGCTATAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * **** * * ** * * * **
47936114 TGGTGAATCTTGCTTCCCCGATATTTTAATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* ** * * * * * ** ***** * *
47936179 CCCTGGCGGTGC-AGTAGAACAGATTGAAGCCACAACGGGGAATCATGTTTCCCCAATATTGCAA
131 CCCTGACATTGCAATTA-AAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAG
** * * * * * ** ** **
47936243 TTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTAGCGGTGCAATGGAGCAGATTGAAG
195 TGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCCGA-CATTGCAATTAAAAAGATTGAAG
* ** * * * ** * * ** * * * **
47936308 CTACAACGGTGAATCTGGCTCCCCCGACATTACAATTAAAAAGTTTGATGCCACAACGGCGAATC
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATC
* * * * * * * * * * **
47936373 TTACTTCTCTGGCGA-TGCAGTGGAACAA-ATTGAAGCTACAATGGTGAATCTTATTTCCCTAAC
324 TTGCTTCCCCGAC-ATTGCAAT-TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGC
** * ** * * * * * * * * * ** *
47936436 ATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTCCTGCTCTGGCAGTGCAGTGGAAT
387 GGTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTC-CCGACATTGCAATTAAAA
* ** * * *
47936499 AGATTGAAGCTACAACAATGAATCTTGC-TCCACGACATTGCAATTAAAAAGATTAAAGTCACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * *
47936563 CGGTGAATCTTACTTCACTAGTGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTATTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* * * * * * *
47936628 CCCCGACATTACAATTAAAAAGATTGAAGCCATAATGGTGAATCTTACTTCCCTGGGAGTGTAAT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
* * * * * *
47936693 GGAACAAATTGAAGCTACAACGGCGAATCTTGC-ACCCTAAACATTGTAATTCAAAAGATTGAAG
196 GGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCC--GACATTGCAATTAAAAAGATTGAAG
* * * * * * *
47936757 -TACAACGGTGAATCTTACTTCCCTGGTGGCGCAGTGGAACAGATTCAAGCTGCAA-TAGTGAAT
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGA-TGAAT
** * * * * ** *
47936820 CTTATTTCCCAGACATTGTAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTTTCTAGCG
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * * * * * **
47936885 GTGCAGTGGAGCAAATTGAAGCCACAACGGCGAATCTGGCTCCCCCGACATTATAATTAAAA
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCT-TCCCGACATTGCAATTAAAA
* * * * ** * ** * * *
47936947 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
*** * ** * ** * * ** * * * **
47937012 CGATAAACCTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* ** * * * * * * ** * *
47937077 CCCTGGCGGTACAGTGAAACAA-ATTGAAGCAACAATGGTGAATC-AAGTTTCCCCGACATTGCA
131 CCCTGACATTGCAATTAAA-AAGATTGAAGCCACAATGGTGAATCTTA-CTTCCTTGGCAGTGCA
* ** * * * * **** ** **
47937140 ATTAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGTGGTGCAATGGAGCAGATTGAA
194 GTGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAA
* ** ** * * * ** * ** * * * *
47937205 GCTACAACATTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGCAGCCACAAC-AGCGAA
258 GCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGA-TGAA
* * * * * ** * * * * * **
47937269 TCTTACTTCCCTGGCAGTGCAGTGGAACAGATTGAAACTACAACGGTGAATCTTATTTCTCTAAC
322 TCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGC
** * * ** * * * * * * * ** * ** *
47937334 ATTCCAATTAAAAAGATCGAAGCCATAATGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAAT
387 GGTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTC-CCGACATTGCAATTAAAA
* ** * * * *
47937397 AGATTGAAGCTACAATAGCGAATCTTAC-TCCACGACATTGCAGTTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * **
47937461 CGACGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAATCTACAACGATGAATCTTGTTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* * * * * * * *
47937526 CTCGGACATTGCAATTAAAAATATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
* * * ** *
47937591 GGAACAAATTGAAGCTACAACGGTGAATCTTG-TATCCAAAACATTGTAATTAAAAAGATTGAAG
196 GGAATAGATTGAAGCTACAACGGCGAATCTTGCT-TCC-CGACATTGCAATTAAAAAGATTGAAG
* * * * * * * * *
47937655 CTACAATGGAGAATCTTAGTTCCCTAGCGGCGCAGTGGAATAGATTCAAGCTACAACGGTGAATC
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATC
** * * * ** **
47937720 TTATTTCCCCGACACTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTACCAA
324 TTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGG
* ** * * * *
47937785 TACAGTGGAGTAGATTGAATCTACAACGGCGAATCTGGCTCCCCCGACATTGCAATTAAAA
389 TGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCT-TCCCGACATTGCAATTAAAA
* * * * ** * ** * * *
47937846 AGATTAAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * ** * **** * * ** * * * **
47937911 TGGTGAATCTTGTTTCCCCGATATTGCAATTAAAAAGATT-AAGGCCACAATGGCGAATCTTACT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAA-GCTACAACGGCGAATCTTGTT
* * * ** * * ** * * ***** * *
47937975 TCCCTGGCAGTGCAGTGGCACAA-ATTGAAGCTACAACAGCGAATCTTGC-TCCACAATATTGTA
130 TCCCTGACATTGCAAT-TAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCA
* ** * * * * * ** * * ** **
47938038 ATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCTGTCGGTACAGTGGAGCAGATTGAA
194 GTGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAA
** * * * * * ** * * ** * *
47938103 GTTATAATGGTGAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAAC-AGCGAA
258 GCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGA-TGAA
* * * * ** * * * * * * ** * *
47938167 TCTTACTTCTCTGGCGGTGC-AGTAGAACAGATTGAAGCTACAATGGGGAATCATGTTTCCCCGA
322 TCTTGCTTCCCCGACATTGCAATTA-AAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGG
** * * ** * * *** * * * * ** ** **
47938231 CATTGTAATTAAAAAGATTGAAGCCACAGCAGTGAATCTTACTTCTCTAGCGGTGCAATGGAGC
386 CGGTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCCGA-CATTGCAATTAAAA
* * *
47938295 AGATTGAAGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * *
47938360 CGGTGAATCTTACTTCCCTGGAGGTGCAGTGGAACAGGTTGAAGCTACAATGGTGAATCTTGTTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* ** * * *
47938425 CCCCGACATTGCAATTAAAAAGATT-AAGGCCACAATGGCAAATCTTACTTCCCTAGCGGTGCAG
131 CCCTGACATTGCAATTAAAAAGATTGAA-GCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAG
* * * *
47938489 TGGAACAAATTGAAGCTACAACAGCGAATCTTGC-TCCACAACATTGCAATTAAAAAGATTGAAG
195 TGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAG
*** * * * ** * * *
47938553 CCACAACGACAAATCTTACTTCCCTGTCGGTACTGTGGAGCAGATTGAAGCTATAATGGTGAATC
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATC
* * * * * *
47938618 TTGGTTCCCCGACATTGTAATTAAAAAGATTGATGCCACAACAGCGAATCTTACTTCGCTGGCGG
324 TTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGG
* * * *
47938683 TGCAGTAGAACAGATTGAAGCTACAATGGTGAATCGTGTTTCCCCGACATTGCAATTAAAA
389 TGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTT-CCCGACATTGCAATTAAAA
* * * ** * ** * ** ** *
47938744 AGATTGAAGCCACAACAG-CAATCTTACTTCCTTGGCGGTCCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * ** * * ** * * * * * * **
47938808 CGGTGAATC-TAGCTCTCCC-GACATTGCAATTAAAAAGTTTGAAGCCACAACAGCAAATCGTAC
66 CGGCGAATCTTA-CT-TCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGT
* * * * * * * * ** *
47938871 TTCCCTGGCGA-TGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTATTTCCCTAACATTG
129 TTCCCTGAC-ATTGCAAT-TAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTG
* ** * * ** * * * * ** * ** *
47938934 CAATTAAAAAGATTGAAGCCACAATAGAGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTG
192 CAGTGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTG
* ** * * ** * * ** * * **
47938999 AAGCTACAACAATGAATCTTGC-TCCAC-GACATTACAATTAAAAAGATTAAAGTTACAACGGCG
256 AAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATG
* * * * * ** ** * *
47939062 AATCTTACTT-CCCTA-GTGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTATTTCCC
320 AATCTTGCTTCCCCGACAT--TGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCC
* * ** * ** * * * * ** * * * *
47939125 CGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCTGGTAGTGTAGTGGA
383 TGGCGGTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCC-GACATTGCAAT-TA
*
47939190 ACA
446 AAA
* * * * ** * * *
47939193 A-ATTGAAGCTACAACAGCGAATCTTGC-ACCCTAAATATTGTAATTAAAAAGATTGAAGCTACA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCC-CGACATTGCAATTAAAAAGATTGAAGCCACA
** * * * ** * *
47939256 ACGGTAAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAATAGTGAATCTTATT
65 ACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTT
* * * * * * * *
47939321 TCCCCGACATTACAATTAAAAATATTGAAGCCACAACGATGAATCTTACTTCCCTAGCGGTGCAG
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAG
** * * * *
47939386 TGGAGCAGATTGAAGCTACAATGGCGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAG
195 TGGAATAGATTGAAGCTACAACGGCGAATCTTGCT-TCCCGACATTGCAATTAAAAAGATTGAAG
* * * * * * * *
47939451 CCACAACGGTGAATCTTATTTCCCTGGAGGTGCAGTGGAACAGGTTAAAGCTACAACGGTAAACC
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATC
* * * * *
47939516 TTGTTTCCCTGACATTGCAATTAAAAAGATT-AATGCCACAATGGTGAATCTTATTTCCCTGGCT
324 TTGCTTCCCCGACATTGCAATTAAAAAGATTGAA-GCCACAACGGTGAATCTTACTTCCCTGGCG
* * * * * *
47939580 GTGCAGTGAAACAAATTGAAGCTAGAACGGTGAATCTTGC-TCCACAACATTGCAATTAAAA
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCC-CGACATTGCAATTAAAA
* * * ** * **** ** *
47939641 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGTCGGTACAGCGGAGTAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * **** * * ** * * ** **
47939706 C-GCTGAATCTTGCTTCCCCGATATTATAATTAAAAAGATTGAAGCCACAACAACGAATCTTACT
66 CGGC-GAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTT
* ** * ** * * * ** ** * *
47939770 TCTCC-GGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTTCCCCGACATTGCA
130 TC-CCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCA
* * * * * * *
47939834 ATGAAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGAGA-TGCAA-TAATAGAGCAGA
194 GTGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCC--GACATTGCAATTAA-A-A--AGA
* * ** * * * ** * * * *
47939897 TTGAAGCTACAACGGTGACTCTGGCTCCCCCGACATTGTAAT-TAAAATG-TATGAAGCCACAAC
253 TTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAA-GAT-TGAAGCTACAAC
* * * ** * * * * *
47939960 GGTGAATCTTACTT-CCCTAGCGGTGCAGTGAAACAGATTGAAGCTACAACGGTGAATCTTATTT
316 GATGAATCTTGCTTCCCCGA-CATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTT
** ** * * ** * * * * * * * * ** **
47940024 CCCTAACATTGTAATTAAAAAAATTGAAGCCATAATGGAGAATCTTACTTCTCTGGCGGTGCGGT
380 CCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTC-CCGACATTGCAAT
** *
47940089 GGAAC
444 TAAAA
* * ** * * * * *
47940094 AGATTGAAGCTACAACAGCAAATCTTGC-TGCCTGACATTACAATTAAAAAGATTAAAG-TACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * ** * *
47940157 CAGCGAATCTTACTTCCCTAGCGGTGTAGTAGAGCAGGCTGAAGCTACAATGGTGAATCTTGTTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* * * * * * * * *
47940222 CCCCGACATTTCAATTAAAAAGATTGAAGCCACAATGGCGAATCATAATTCCCTAGCGGTGTAGT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
* * * * *** * ** * *
47940287 GGAACAAATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGC
196 GGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGC
* * * * * ** * * ** * *
47940352 TACAATGGTGAATCTTATTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACGACGAATCT
260 CACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATCT
* * ** * ** ** * ** * * * *
47940417 TCCTT-CCCTAGCGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATC-TAGCTCCCCCGACA
325 TGCTTCCCCGA-CATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTA-CTTCCCTGGCG
* * * * * * * * **** * * *
47940480 TTGCAAT-TAATAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAATA
388 GTGCAGTGGAA-CAGATTGAAGCTACAATGGCGAATCTTGCTTCCC-GACATTGCAAT-TAAAA
* * * * *
47940543 TG-TTGAAGCTACAATGGTGAATCTTG-TTTCCCGACATTGCAATTAAAAAGATTAAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * * * *
47940606 TGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAAAAAATTGAAGCTACAACGGTGAATCTTG-CT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* * * * * *
47940670 CTAC-GACATTGTAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTACAG
131 C-CCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAG
** * * * * *
47940734 TGGAGCAGATTGAAACCACAACGACAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAG
195 TGGAATAGATTGAAGCTACAACGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAAG
* * * * * *
47940799 CCACAACAGCGAATCTTAC-TCTCCTGGCGGTGTAGTGGAACAGATCGAAGCTACAACGGTGAAT
259 CCACAACGGTGAATCTTACTTC-CCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAAT
* * * * *
47940863 CTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCTACAACTGCGAGTCTTACTTCCCTGGCG
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * * * * * ** * * * * *
47940928 GTGCAATAGAGCATATTGACGGTACAACAGTGAAGCTGGCTCCCCCAACATTGCAATTAAAA
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCT-TCCCGACATTGCAATTAAAA
* * ** * * ** * ** * *
47940990 AGATTGAAGCCACAACTGCGAATCTTATTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
** * ** * ** * ** * * * * * * **
47941055 CGGATAATTTTGTTTCCCTGACATTGTAATTAAAAATATTAAAGCCACAATGGTGAATCTTACTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* * ** * * * * * * **** ** * *
47941120 CCCCGGCGGTGCAGTGAAACAGATTGAAGCTACAACGGTGAATCTTGC-TCCACAACTTTGTAAT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
* * * * * ** * * * * * **
47941184 GAAAAACATTAAAGCCACAACGGTAAATCTTACTTCCCTAGC--GGTATAGTAGAGCAGATTGAA
196 GGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCCGA-CATTGCA-ATTA-AAAAGATTGAA
* * * * * ** * * ** * * * *
47941247 GCTACAACGGTAAATCTTGCTTCCCCGACATTGTAATTAAAAATATTGAAGCCACAACAACGAAT
258 GCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAAT
* * ** * ** * ** * * ** * *
47941312 CATACTTCCATGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACA
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * * ** * * * * * * ** * ** **
47941377 TTGTAATTAAAAATATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAGC
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCCGA-CATTGCAATTAAAA
* * * *
47941439 AGATTGAAGCTACAACGGCGAA-CTAGC-TCTCCCGACATTGCAATTAAAAAGTTTGAAGCCACA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTC-CCCGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * ** * * * * *
47941502 ACGGCGAATCTTATTTCCTTCGCGATACAGTAGAACAGATTAAAGCTACAACAGTGAATCTGGTT
65 ACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTT
* * * * * * *
47941567 TCCCCGATATTGCAATTAAAAAGATTGAAGACACAATGGTAAATCTTACTTCCCTGGTAGTGTAG
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAG
* * * ** * * *
47941632 TGGAACAAATTGAAGTTACAACGATGAATCTTG-TTCCACAATATTGCAATTAAAAAGATTAAAG
195 TGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAG
* * ** * * * ** * * *
47941696 CCCCAACAGTGAATCTTACTTAACTGTCAGTACAGTGGAGCAGATTAAAGATACAACGGTGAATC
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATC
* * *** * *
47941761 TTGCTTCCCCGGACATAGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACATCCCTAGCG
324 TTGCTTCCCC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * * * * * *
47941826 GTGCAGTGGAAAAGATTGAAGCTACAACGGTGAATCATGTTTCCCTGACATTGTAATTGAAA
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCC-GACATTGCAATTAAAA
* * * * * ** ** ** *
47941888 AGATTGAAGCCACAACGATGAATCTTACTTTCCTGGCGGTGCAATGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* ** * * * ** * * ** * * * **
47941953 CGGTGAATCTGGCTCCCCAGACATTGCAATTAAAAAGTTTGAAGCCACAACGGCGAATCTTACTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
**** * ** * * * * * * ** * * *
47942018 CCCTGGTGGTGCAGTGGAACAGATTAAAGCTACAACGGTGAATCTTATTTCCCTAACATTGTAAT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
** * * * * * * * * * ** * * ** * *
47942083 TAAAAAGATTGAAGCCATAATGGTGAATATTACTTCTCTGGCGGTACAGTGGAATAGATTGGAGC
196 GGAATAGATTGAAGCTACAACGGCGAATCTTGCTTC-CCGACATTGCAATTAAAAAGATTGAAGC
* ** * * ** * * ** * * * ***
47942148 TACAACGGTGAATCTTGTTTCCCCGACATTGTAATTAAAAAGATTGAATCCACAATGGCAAATCT
260 CACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATCT
* * * ** ** * * * ** * * ** *
47942213 TACTTCCCTGGCGGTGCCGTGGAACAA-ATTGAAGCTACAATAGCGAATCTTGC-TCCAC-AACA
325 TGCTTCCCCGACATTGCAAT-TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCG
* * * * * * * * * ** * * * *
47942275 TTGCAAAT-AAAAAGATTGAAGCCATAATGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACA
388 GTGC-AGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCC-GACATTGCAAT-TAAAA
* * *** * *
47942338 A-ATTGAAGCTACAAC-GTCGAATCTTGCGTCCTAAACATTGTAATTAAAAATATTGAA-CCTAC
1 AGATTGAAGCCACAACGGT-GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCC-AC
* * * * *** * * * *
47942400 AACGGTGAATATTACTTCCATGACGGCACAGTGGAACAGATTCAAGCTACAATGGTGAATCTTAT
64 AACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGT
* * * * *
47942465 TTCCCGGACATTACAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCAGTGCA
129 TTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCA
** * ** * *
47942530 GTGGAGCAGATTGAAGCTAAAACGGTAAATCTGGCTCTCCCGACATTGTAATTAAAAAGATTGAA
194 GTGGAATAGATTGAAGCTACAACGGCGAATCTTGCT-TCCCGACATTGCAATTAAAAAGATTGAA
* * * * * * * *
47942595 GCCATAATGGAGAATCTTACTTCCCTGGTGGTACAGTGGAACAGATTGAAGCTACAACGGTGCAT
258 GCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAAT
* * * **
47942660 CTGGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCG
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * * **
47942725 GTGCAGTGGAACAAATTGAAGCTATAACGGCGAATCTTG-TTCCATAACATTGCAATTAAAA
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCC-CGACATTGCAATTAAAA
* * * ** * * ** * * * ** * *
47942786 AGATTGAAGCCCCAACGGCGAATCTTACTTAGCTGTCGGTACAGTGGAGCAA-ATTGAAGCTATA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAAT-TAAAAAGATTGAAGCCACA
* * * ** * ** * * * ** **
47942850 ACGGTGAATCTTACTTCCCCGACATTGTAATTAAAAAGATTGAAGCGACAACAGTAAATCTTACT
65 ACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTT
** * ** * * * * ** ** * *
47942915 TCCCT-AGCGGTGCAGTGGAAAATATTAAAGCTACAACGGTGAATCTTGTTTCCCCGACACTGCA
130 TCCCTGA-CATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCA
* ** * * * * ** ** ** ** *
47942979 ATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTTTCTGGA-GGTGCAATGGAGCAGATTAA
194 GTGGAATAGATTGAAGCTACAACGGCGAATCTTGC--TTCCCGACATTGCAATTAAAAAGATTGA
* ** * * * ** * ** * *
47943043 AGCTACAACGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGTTTGAAG-TCACAACGGTGA
257 AGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCT-ACAACGATGA
* * * **** * * * * * * * *
47943107 ATCTTTCTTCTCTGGTGGTGCAGTGGAACAA-ATTGAAGCTATAACGGTGAATCTTATTTCCTTA
321 ATCTTGCTTCCCCGACATTGCAAT-TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTG
**** * ** * * * * * * * ** * ** *
47943171 ATATTGCATTTTAAAAGACTGAAGCCACAATGACGAATCTTACTTCTCTGGCGGTGCAGTGGAAT
385 GCGGTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTC-CCGACATTGCAATTAAAA
* * * * * * *
47943236 AGGTTGGAGCTACAACTGCGAATCTTGC-TCCACGACATTGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * * * *
47943300 TGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAATGGTGAATCTTGTTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* * * * * *
47943365 CCCCGACATTGGAATTAAAAAGATTGAAGACACAATGGAGAATATTACTTTCC-TGGCGGTGCAG
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTAC-TTCCTTGGCAGTGCAG
* * * * * * ** *
47943429 TGGAACAAATTGAAGTTACAACGGTGAATCTTACATCCTAAACATTGTAATTAAAAAGATTGAA-
195 TGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAG
** * * * * * * * *
47943493 CCTACAACGCCGAATCTTACTTCCCTAGCGGTACAGTAGAACAGATTCAAGCTAAAATGGTGAAT
259 CC-ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAAT
** * * *
47943558 CTTATTTCCCCGACTTTGTAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCG
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * * *
47943623 GTGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGC-TCGGCCGACATTGCAATTAAAA
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTC--CCGACATTGCAATTAAAA
* * * ** * ** * * *
47943685 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGGTTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
** ** * * ** * * ** * * ** * **
47943750 CGGTTAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAATAGCGAATATTACTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* * * * * * * * ** * * *
47943815 CCCTGGCAGTGCAGTGGAACAA-ATTAAAGCTACAACGGTGAATCTTAC-TCCACGACATTGCAA
131 CCCTGACATTGCAAT-TAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAG
** * * * * * ** * * ** **
47943878 TTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAG
195 TGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAG
* ** * * ** * * ** * * *
47943943 CTACAACGGCAAATCTTACTTCCCCGACATTGTAATTAAAAATATTGAAGCCACAAC-AGTCAAT
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGA-TGAAT
* * * ** * * ** * * * * ** * *
47944007 CTTACTTCCCTGGCGGTACAGTGGAACAGAATGAAGCTACAACGGTGAATCCTGTTTCCCTGACA
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * ** * * **** * * ** ** **
47944072 TTGCAATTAAAAAGATTGAAGCCACAACATTGAATCTTACTTCCCTGGCGGTGCAATGGAGC
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCC-GACATTGCAATTAAAA
* * * * * * ** * * *
47944134 ATATTGAAGCTACAACGGTGAATCTTACTTCTCTGGCGGTGC-AGTAGAGCAA-ATTGAAGCTAC
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTA-A-AAAGATTGAAGCCAC
** * * * * * * * *
47944197 AACGATGAATCTTGCTTCAC-GGC-ATAGCAAT-TATAAAGATTGAAGCCACAACGGCGAATCTT
64 AACGGCGAATCTTACTTCCCTGGCGGT-GTAGTGGA-ACAGATTGAAGCTACAACGGCGAATCTT
** * * * * * ** ** * * ** * ** * *
47944259 ACTTCCTTGGCGGTT-TAGTGGAGCAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATT
127 GTTTCCCTGAC-ATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGT
* * ** * * ** * * * ** * * ** *
47944323 GTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTTCCTTGGCGGTGTAGTGGAACAGATT
191 GCAGTGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATT
* ** * ** * * * * **
47944388 GAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAGAGATTGAAGCCACAATGGC
255 GAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAA-AGATTGAAGCTACAACGAT
* * ** * * * * *
47944452 GAATCTTACTT-CCCTAGCGGTGCAGTGGAACAA-ATTGAAGCTACAACGGTGAATCTTGC-TCC
319 GAATCTTGCTTCCCCGA-CATTGCAAT-TAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCC
* ** * ** * * * * * * * * * * * *
47944514 AC-GACATTGCAATTAAAAATATTGAAGCCACAACGGTGAATCATACTTCCCTGGCGTTACAGTG
382 -CTGGCGGTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCC-GACATTGCAATT
* **
47944578 GAGC
445 AAAA
* ** * * *
47944582 AGATTGAAGCTACAACGGCAAATCTTGCTTCCCCAACAATGTAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
47944647 CAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* *
47944712 CCCTGACATTGCAATTAAAATGATTGAAGCCACAATAGTGAATCTTACTTCCTTGGCAGTGCAGT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
* * *
47944777 GGAATAAATTAAAGCTACAACGGCGAATCTTAC-TCCACGACATTGCAATTAAAAAGATTGAAGC
196 GGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAGC
* * ** ***
47944841 CACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAGTAGATTGAAGCTACAACGGCAAATCT
260 CACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATCT
* *
47944906 TGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACAGTGAATCTTACTTCCCTGGCGGT
325 TGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGT
* ** * *
47944971 ACAGTGGAACAGATTGAAGCTACAATGGTAAATCTTGTTTGCCTGACATTGCAATTAAAA
390 GCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTT-CCCGACATTGCAATTAAAA
* * * * * ** ** ** * *
47945031 AGATTGAAACCACAAC-ATCGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACA
1 AGATTGAAGCCACAACGGT-GAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * * * * *
47945095 ACGGTGAATCTTATTTCTCTGGCGGTGTAGTGGAGCAAATTGAAGCTACAATGACGAATCTTG-C
65 ACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTT
* * * ** **
47945159 TCTAC-GACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTTTA
130 TC-CCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCA
** * * *
47945223 GTGGAGCAGATTGAAGTTACAACGGCAAATCTTGCTTTCCCGACATTGTAATTAAAAAGATTGAA
194 GTGGAATAGATTGAAGCTACAACGGCGAATCTTGC-TTCCCGACATTGCAATTAAAAAGATTGAA
*** * * *
47945288 GCCACAACAACGAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAAT
258 GCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAAT
* * * * *
47945353 CTTGTTTCCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAATCTTACTTCCCTAGCG
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * * *
47945418 GTGCAGTGGAACAAATTGAAGCTACAACGGCGAATCCTGC-TCCACGACATTGTAATTAAAA
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCC-CGACATTGCAATTAAAA
* * * * ** * * ** ** *
47945479 ATATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * *** ** * ** * * ** **
47945544 CGGCAAATCTTGCTTCCCCAACATTGTAATTAAAAAGATTGAAGCCACAACAACGAATCTTACTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* ** * ** * * * ** * * * *
47945609 CCCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
* * * * * * ** ** ***
47945674 -TAAAATGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCTGATTGAAG
196 GGAATA-GATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAG
* * ** * * * ** * * ** * *
47945738 CTACAACGATGAATCTGGCTCCCCCGACCTTGTAATTAAAAAGATTGAAGCCACAACTG-CGAAT
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAAC-GATGAAT
* * * ** * * ** ** * ** * *
47945802 CTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACA
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * * ** * * * * * * ** * ** *
47945867 TTGTAATTAAAAAGATTGAAGCGACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAAT
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTC-CCGACATTGCAATTAAAA
* ** * * *
47945929 AGATTGAA-CCTACAATGGCAAATCTTGC-TCCACGACATTGTAATTAAAAAGATTGAAGACACA
1 AGATTGAAGCC-ACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACA
* * * * *
47945992 ACGGCAAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTATAACGGCGAATCTGGTT
65 ACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTT
* * *
47946057 TCCCCGACATTTCAATTAAAAAGATTGAAGCTACAACT-GTGAATCTTACTTCCTTGGCAGTGCA
130 TCCCTGACATTGCAATTAAAAAGATTGAAGCCACAA-TGGTGAATCTTACTTCCTTGGCAGTGCA
* * * * * * *
47946121 GTGGAACAGATTAAAGCTACAATGGTGAATCTTGTTTCCCCAACATTGTAATTAAAAAGATTGAA
194 GTGGAATAGATTGAAGCTACAACGGCGAATCTTGCTT-CCCGACATTGCAATTAAAAAGATTGAA
* ** * * * ** * ** *
47946186 GCCACAGCGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGATGAAT
258 GCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAAT
* * * * * ** * ** * * ** * *
47946251 CTTACATCTCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACA
323 CTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCG
* * ** * * * * ** * * * * * ** *
47946316 TTGCAATTAAAAATATTGAAGCCACAATGGTGAAAATTACTTCTCTGGCAGTGCAGTGGAAC
388 GTGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTC-CCGACATTGCAATTAAAA
* * * *
47946378 AGATTGAAGCTACAATGGTGAATCTTGC-TCCACGACATTGCAATTAAAAATATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
* * *
47946442 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGGTGAATCTTGCTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
** * *
47946507 CCCCAACATTACAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCGGTGCAGT
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
*
47946572 GGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCCAGACATTGCAATTAAAAAGATTAAAGC
196 GGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCC-GACATTGCAATTAAAAAGATTGAAGC
* * *
47946637 CACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATATATTGAAGCTATAACGATGAATCT
260 CACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATCT
* * * * *
47946702 GGCTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAACTGTAAATCTTACTTCCTTGGCGGT
325 TGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGT
* * * *
47946767 GCAGTGGAACAGATTGAAGCTACAATGGTGAATCTTGTTTCGCCGATATTGTAATTAAAA
390 GCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTC-CCGACATTGCAATTAAAA
* * *
47946827 AGATTGAAGCCACAACGGTGAATCTGGCTCCCCCGACATTACAATTAAAAAGATTGAAGCCACAA
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
** * * * *
47946892 CGATGAATCTTACTTCCCTGGTGGTGAAGTGGAACAGATTGAAGTTACAACGGTGAATCTTGTTT
66 CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
* ** *
47946957 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGCGAAAATTACTT-CTCTGGTAGTGCAG
131 CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCT-TGGCAGTGCAG
* *
47947021 TGGAATAGATTGAAGCTACAACGGTGAATCTTGC-TCCACGACATTGCAATTAAAAATATTGAAG
195 TGGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCC-CGACATTGCAATTAAAAAGATTGAAG
* ** *
47947085 CCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACGTTGAATC
259 CCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATC
* * * * *
47947150 TGGCTTCCCCGACATTGCAATTAAAAAGATTGTAGCCACAATGGTGAATCTTACTTCCTTGGTGG
324 TTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGG
* * *
47947215 TGCAGTGGAACAAATTGAAGCTACAACGGCGAATCTTGCTTCCTAGACATTGCAATTAAAA
389 TGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCC-CGACATTGCAATTAAAA
*
47947276 AGATTGAAGCCACAACGGTGAATCTTACTTCCC
1 AGATTGAAGCCACAACGGTGAATCTTGCTTCCC
47947309 TGGCAGTGCA
Statistics
Matches: 8752, Mismatches: 3171, Indels: 470
0.71 0.26 0.04
Matches are distributed among these distances:
446 1 0.00
447 45 0.01
448 1609 0.18
449 5477 0.63
450 1222 0.14
451 217 0.02
452 146 0.02
453 34 0.00
454 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (448 bp):
AGATTGAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAA
CGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACGGCGAATCTTGTTT
CCCTGACATTGCAATTAAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCTTGGCAGTGCAGT
GGAATAGATTGAAGCTACAACGGCGAATCTTGCTTCCCGACATTGCAATTAAAAAGATTGAAGCC
ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAAAAGATTGAAGCTACAACGATGAATCTT
GCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTG
CAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCCGACATTGCAATTAAAA
Found at i:47947349 original size:100 final size:100
Alignment explanation
Indices: 47940294--47947384 Score: 5550
Period size: 100 Copynumber: 71.1 Consensus size: 100
47940284 AGTGGAACAA
* * * * *
47940294 ATTGAAGCTACAACGGCGAATCTTACTTCCCTGGCGGCGCAGTGGAACAGATTCAAGCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * *
47940359 GTGAATCTTATTTCCCCGACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
** * * **
47940394 ATTGAAGCCACAACGACGAATCTTCCTTCCCTAGCGGTGCAGTGGAGTAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * * * *
47940459 GCAAATCTAGCTCCCCCGACATTGCAATTAATAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * *
47940494 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTGCAGTGGAATATG-TTGAAGCTACAAT
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAAGCTACAAC
*
47940558 GGTGAATCTTGTTTCC-CGACATTGCAATTAAAAAG
65 GGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * * * *
47940593 ATTAAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAAAAAATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
*
47940658 GTGAATCTTGC-T-CTACGACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCT-CGACATTGCAATTAAAAAG
* * * * * *
47940692 ATTGAAGCCACAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAACCACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
*** * *
47940757 ACAAATCTTGCTTCCCCGACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * *
47940792 ATTGAAGCCACAACAGCGAATCTTAC-TCTCCTGGCGGTGTAGTGGAACAGATCGAAGCTACAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* *
47940856 GGTGAATCTTGTTTCCCCGACATTGCAATTAAAAAG
65 GGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * * * * * * * * *
47940892 ATTGAAGCTACAACTGCGAGTCTTACTTCCCTGGCGGTGCAATAGAGCATATTGACGGTACAACA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * *
47940957 GTGAAGCTGGCTCCCCCAACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * *
47940992 ATTGAAGCCACAACTGCGAATCTTATTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47941057 GAT-AATTTTGTTTCC-CTGACATTGTAATTAAAAAT
66 G-TGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * *
47941092 ATTAAAGCCACAATGGTGAATCTTACTTCCCCGGCGGTGCAGTGAAACAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * *
47941157 GTGAATCTTGC-TCCACAACTTTGTAATGAAAAAC
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * ** * *
47941191 ATTAAAGCCACAACGGTAAATCTTACTTCCCTAGCGGTATAGTAGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47941256 GTAAATCTTGCTTCCCCGACATTGTAATTAAAAAT
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
*** * *
47941291 ATTGAAGCCACAACAACGAATCATACTTCCATGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47941356 GTGAATCTTGTTTCC-CTGACATTGTAATTAAAAAT
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * *
47941391 ATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47941456 GCGAA-CTAGCTCTCC-CGACATTGCAATTAAAAAG
66 GTGAATCTTGCT-TCCTCGACATTGCAATTAAAAAG
* * * * * * * * * *
47941490 TTTGAAGCCACAACGGCGAATCTTATTTCCTTCGCGATACAGTAGAACAGATTAAAGCTACAACA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47941555 GTGAATCTGGTTTCCCCGATATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * ** * * *
47941590 ATTGAAGACACAATGGTAAATCTTACTTCCCTGGTAGTGTAGTGGAACAAATTGAAGTTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47941655 ATGAATCTTG-TTCCACAATATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * ** * * * * * *
47941689 ATTAAAGCCCCAACAGTGAATCTTACTTAACTGTCAGTACAGTGGAGCAGATTAAAGATACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47941754 GTGAATCTTGCTTCCCCGGACATAGTAATTAAAAAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
*** * * *
47941790 ATTGAAGCCACAACAACGAATCTTACATCCCTAGCGGTGCAGTGGAAAAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47941855 GTGAATCATGTTTCC-CTGACATTGTAATTGAAAAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * *
47941890 ATTGAAGCCACAACGATGAATCTTACTTTCCTGGCGGTGCAATGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47941955 GTGAATCTGGC-TCCCCAGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * *
47941990 TTTGAAGCCACAACGGCGAATCTTACTTCCCTGGTGGTGCAGTGGAACAGATTAAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * *
47942055 GTGAATCTTATTTCC-CTAACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * * * * *
47942090 ATTGAAGCCATAATGGTGAATATTACTTCTCTGGCGGTACAGTGGAATAGATTGGAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47942155 GTGAATCTTGTTTCCCCGACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * ** * * **
47942190 ATTGAATCCACAATGGCAAATCTTACTTCCCTGGCGGTGCCGTGGAACAAATTGAAGCTACAATA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47942255 GCGAATCTTGC-TCCACAACATTGCAAATAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * * * *
47942289 ATTGAAGCCATAATGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAAATTGAAGCTACAAC-
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* ** * *
47942353 GTCGAATCTTGCGTCCTAAACATTGTAATTAAAAAT
66 GT-GAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * ** * *
47942389 ATTGAA-CCTACAACGGTGAATATTACTTCCATGACGGCACAGTGGAACAGATTCAAGCTACAAT
1 ATTGAAGCC-ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
** *
47942453 GGTGAATCTTATTTCC-CGGACATTACAATTAAAAAG
65 GGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * *
47942489 ATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCAGTGCAGTGGAGCAGATTGAAGCTAAAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47942554 GTAAATCTGGCTCTCC-CGACATTGTAATTAAAAAG
66 GTGAATCTTGCT-TCCTCGACATTGCAATTAAAAAG
* * * * *
47942589 ATTGAAGCCATAATGGAGAATCTTACTTCCCTGGTGGTACAGTGGAACAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47942654 GTGCATCTGGTTTCCCCGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* ** * *
47942689 ATTGAAGCCACAATGGCAAATCTTACTTCCCTGGCGGTGCAGTGGAACAAATTGAAGCTATAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47942754 GCGAATCTTG-TTCCAT-AACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCC-TCGACATTGCAATTAAAAAG
* * ** * * * * *
47942788 ATTGAAGCCCCAACGGCGAATCTTACTTAGCTGTCGGTACAGTGGAGCAAATTGAAGCTATAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47942853 GTGAATCTTACTTCCCCGACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * * * * *
47942888 ATTGAAGCGACAACAGTAAATCTTACTTCCCTAGCGGTGCAGTGGAAAATATTAAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47942953 GTGAATCTTGTTTCCCCGACACTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
** * * * *
47942988 ATTGAAGCCACAACGGTGAATCTTACTTTTCTGGAGGTGCAATGGAGCAGATTAAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47943053 GTGAATCTGGCTCCCCCGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * * * * *
47943088 TTTGAAGTCACAACGGTGAATCTTTCTTCTCTGGTGGTGCAGTGGAACAAATTGAAGCTATAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** ** * * *
47943153 GTGAATCTTATTTCCTTAATATTGCATTTTAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * ** * * * * *
47943188 ACTGAAGCCACAATGACGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGGTTGGAGCTACAACT
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47943253 GCGAATCTTGC-TCCACGACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * *
47943287 ATTGAAGCCACAATGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47943352 GTGAATCTTGTTTCCCCGACATTGGAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * * * * *
47943387 ATTGAAGACACAATGGAGAATATTACTTTCCTGGCGGTGCAGTGGAACAAATTGAAGTTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * ** *
47943452 GTGAATCTTACATCCTAAACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
** * * * * * *
47943487 ATTGAA-CCTACAACGCCGAATCTTACTTCCCTAGCGGTACAGTAGAACAGATTCAAGCTAAAAT
1 ATTGAAGCC-ACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
** * * *
47943551 GGTGAATCTTATTTCCCCGACTTTGTAATTAAAAAG
65 GGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * *
47943587 ATTGAAGCCACAACGGTGAATCTTACTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
47943652 GTGAATCTTGC-TCGGC-CGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTC--CTCGACATTGCAATTAAAAAG
* *
47943687 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGGTTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47943752 GTTAATCTTGTTTCCCCGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
** * * * * *
47943787 ATTGAAGCCACAATAGCGAATATTACTTCCCTGGCAGTGCAGTGGAACAAATTAAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47943852 GTGAATCTTAC-TCCACGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* *
47943886 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * * * *
47943951 GCAAATCTTACTTCCCCGACATTGTAATTAAAAAT
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * *
47943986 ATTGAAGCCACAACAGTCAATCTTACTTCCCTGGCGGTACAGTGGAACAGAATGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47944051 GTGAATCCTGTTTCC-CTGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
** * * *
47944086 ATTGAAGCCACAACATTGAATCTTACTTCCCTGGCGGTGCAATGGAGCATATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * ** * *
47944151 GTGAATCTTACTT-CTCTGGCGGTGC-AGTAGAGCAA-
66 GTGAATCTTGCTTCCTC-GACATTGCAATTA-A-AAAG
* * * * * * * * *
47944186 ATTGAAGCTACAACGATGAATCTTGCTTCAC-GGC-ATAGCAAT-TATAAAGATTGAAGCCACAA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGT-GCAGTGGA-ACAGATTGAAGCTACAA
* * * * * * * ** **
47944248 CGGCGAATCTTACTTCCTTGGCGGTT-TAGTGGAGCAG
64 CGGTGAATCTTGCTTCCTCGAC-ATTGCAATTAAAAAG
* ** * * * ** * * ** * * *
47944285 ATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * * * ** * * ** *
47944350 ACGAATCTTACTTCCTTGGCGGTGTAGTGGAACAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* ** * ** * ** * * *
47944385 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAGAGATTGAAGCCACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * ** * * *
47944450 GCGAATCTTACTTCC-CTAGCGGTGCAGTGGAACAA-
66 GTGAATCTTGCTTCCTCGA-CATTGCAAT-TAAAAAG
* * * ** * ** * * *
47944485 ATTGAAGCTACAACGGTGAATCTTGC-TCCAC-GACATTGCAATTAAAAATATTGAAGCCACAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * * * * * ** **
47944548 GGTGAATCATACTTCC-CTGGCGTTACAGTGGAGCAG
65 GGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* ** * *** ** * * ** * * *
47944584 ATTGAAGCTACAACGGCAAATCTTGCTTCCCCAACAATGTAATTAAAAAGATTGAAGCCACAACA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * ** * ** *
47944649 GCGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* ** * ** * * * * *
47944684 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAAT-TAAAATGATTGAAGCCACAAT
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACA-GATTGAAGCTACAAC
* * * * * * * *
47944748 AGTGAATCTTACTTCCTTGGCAGTGCAGTGGAATAA-
65 GGTGAATCTTGCTTCCTCGACATTGCAAT-TAAAAAG
* * * * ** * ** * *
47944784 ATTAAAGCTACAACGGCGAATCTTAC-TCCAC-GACATTGCAATTAAAAAGATTGAAGCCACAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * **** * ** **
47944847 GGCGAATCTTACTTCC-CTGGTGGTGCAGTGGAGTAG
65 GGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* ** * * * ** * * ** * * *
47944883 ATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGTAATTAAAAAGATTGAAGCCACAACA
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * ** * * ** *
47944948 GTGAATCTTACTTCC-CTGGCGGTACAGTGGAACAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * ** * * ** * ** * * *
47944983 ATTGAAGCTACAATGGTAAATCTTGTTTGCCTGACATTGCAATTAAAAAGATTGAAACCACAAC-
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * ** ** ** *
47945047 ATCGAATCTTACTTCC-CTGGCGGTGCAATGGAGCAT
66 GT-GAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * * * * *
47945083 ATTGAAGCTACAACGGTGAATCTTATTTCTCTGGCGGTGTAGTGGAGCAAATTGAAGCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
**
47945148 ACGAATCTTGC-T-CTACGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCT-CGACATTGCAATTAAAAAG
* ** * *
47945182 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGTGGTTTAGTGGAGCAGATTGAAGTTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** *
47945247 GCAAATCTTGCTTTCC-CGACATTGTAATTAAAAAG
66 GTGAATCTTGC-TTCCTCGACATTGCAATTAAAAAG
*** *
47945282 ATTGAAGCCACAACAACGAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
*
47945347 GTGAATCTTGTTTCC-CTGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * *
47945382 ATTGAAGCCACAATGGCGAATCTTACTTCCCTAGCGGTGCAGTGGAACAAATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * *
47945447 GCGAATCCTGC-TCCACGACATTGTAATTAAAAAT
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* *
47945481 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * * *
47945546 GCAAATCTTGCTTCCCCAACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
*** *
47945581 ATTGAAGCCACAACAACGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47945646 GTGAATCTTGTTTCC-CTGACATTGCAATTAAAATG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * * *
47945681 ATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCGGTGCAATGGAGCTGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * * *
47945746 ATGAATCTGGCTCCCCCGACCTTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * *
47945781 ATTGAAGCCACAACTGCGAATCTTACTTCCCTGGCGGTACAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47945846 GTGAATCTTGTTTCC-CTGACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * * * * *
47945881 ATTGAAGCGACAAGGGCGAATCTTACTTCTCTGGCGGTGCAGTGGAATAGATTGAACCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * *
47945946 GCAAATCTTGC-TCCACGACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* ** * * * *
47945980 ATTGAAGACACAACGGCAAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTAAAGCTATAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * *
47946045 GCGAATCTGGTTTCCCCGACATTTCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * * * *
47946080 ATTGAAGCTACAACTGTGAATCTTACTTCCTTGGCAGTGCAGTGGAACAGATTAAAGCTACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * *
47946145 GTGAATCTTGTTTCCCCAACATTGTAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* ** * * * ** * ** * *
47946180 ATTGAAGCCACAGCGGTGAATCTGGCTCCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * ** * ** *
47946245 ATGAATCTTACAT-CTCTGGCGGTGCAGTGGAACAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* ** * ** * ** * * * *
47946280 ATTGAAGCTACAACGGTGAATCTTGTTTCCCTGACATTGCAATTAAAAATATTGAAGCCACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
** * * * * ** *
47946345 GTGAAAATTACTT-CTCTGGCAGTGCAGTGGAACAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * * ** * ** * * *
47946380 ATTGAAGCTACAATGGTGAATCTTGC-TCCAC-GACATTGCAATTAAAAATATTGAAGCCACAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTCC-CTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * * ** * * ** **
47946443 GGCGAATCTTACTTCC-CTGGCGGTGTAGTGGAGCAG
65 GGTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * *** ** * * ** * * *
47946479 ATTGAAGCTACAACGGTGAATCTTGCTTCCCCAACATTACAATTAAAAAGATTGAAGCCACAATG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * ** * ** *
47946544 GTGAATCTTACTTCCTTGGCGGTGCAGTGGAATAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * * * ** * ** * * *
47946579 ATTGAAGCTACAACGGCGAATCTTGCTTCCCAGACATTGCAATTAAAAAGATTAAAGCCACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * ** * ** * *
47946644 GTGAATCTTACTTCC-CTGGCGGTGCAGTGGAATAT
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * * ** * * ** * * ** * * *
47946679 ATTGAAGCTATAACGATGAATCTGGCTTCCCCGACATTACAATTAAAAAGATTGAAGCCACAACT
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * * ** * ** *
47946744 GTAAATCTTACTTCCTTGGCGGTGCAGTGGAACAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * ** **** * * ** * *
47946779 ATTGAAGCTACAATGGTGAATCTTGTTTCGCC-GATATTGTAATTAAAAAGATTGAAGCCACAAC
1 ATTGAAGCCACAACGGTGAATCTTACTTC-CCTGGCGGTGCAGTGGAACAGATTGAAGCTACAAC
* * * *
47946843 GGTGAATCTGGCTCCCCCGACATTACAATTAAAAAG
65 GGTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * *
47946879 ATTGAAGCCACAACGATGAATCTTACTTCCCTGGTGGTGAAGTGGAACAGATTGAAGTTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
*
47946944 GTGAATCTTGTTTCC-CTGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTC-GACATTGCAATTAAAAAG
* * ** * ** *
47946979 ATTGAAGCCACAATGGCGAAAATTACTTCTCTGGTAGTGCAGTGGAATAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47947044 GTGAATCTTGC-TCCACGACATTGCAATTAAAAAT
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* *
47947078 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAGCAGATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * *
47947143 TTGAATCTGGCTTCCCCGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * * * *
47947178 ATTGTAGCCACAATGGTGAATCTTACTTCCTTGGTGGTGCAGTGGAACAAATTGAAGCTACAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* *
47947243 GCGAATCTTGCTTCCTAGACATTGCAATTAAAAAG
66 GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
* * *
47947278 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCAGTGCAGTGGAACAAATTGAAGCTATAACG
1 ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
* * * **
47947343 ATGAATCTTACTTGCCT-GACATTGCAGTTAATTAG
66 GTGAATCTTGCTT-CCTCGACATTGCAATTAAAAAG
47947378 ATTGAAG
1 ATTGAAG
47947385 ATAGCAAATC
Statistics
Matches: 5857, Mismatches: 1034, Indels: 200
0.83 0.15 0.03
Matches are distributed among these distances:
97 1 0.00
98 12 0.00
99 1428 0.24
100 4298 0.73
101 117 0.02
102 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (100 bp):
ATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACG
GTGAATCTTGCTTCCTCGACATTGCAATTAAAAAG
Found at i:47949139 original size:3 final size:3
Alignment explanation
Indices: 47949133--47949168 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
47949123 TATTAAACAA
47949133 ATT ATT ATT ATT ATT ATT ATTT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT AT
47949169 CATCATCATC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:47949173 original size:3 final size:3
Alignment explanation
Indices: 47949167--47949252 Score: 172
Period size: 3 Copynumber: 28.7 Consensus size: 3
47949157 TATTATTATT
47949167 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
47949215 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
47949253 AGTTTTATTG
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 83 1.00
ACGTcount: A:0.34, C:0.33, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:47956065 original size:21 final size:22
Alignment explanation
Indices: 47956040--47956083 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
47956030 ATTATTATTA
47956040 TTATTATTTT-CTTTACTTTAT
1 TTATTATTTTACTTTACTTTAT
*
47956061 TTATTATTTTACTTTATTTTAT
1 TTATTATTTTACTTTACTTTAT
47956083 T
1 T
47956084 ATTTATTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (22 bp):
TTATTATTTTACTTTACTTTAT
Found at i:47956081 original size:18 final size:18
Alignment explanation
Indices: 47956037--47956087 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
47956027 ATTATTATTA
*
47956037 TTATTATTATTTTCTTTACT
1 TTATT-TTATTAT-TTTACT
47956057 TTA-TTTATTATTTTACT
1 TTATTTTATTATTTTACT
47956074 TTATTTTATTATTT
1 TTATTTTATTATTT
47956088 ATTACTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 9 0.31
18 16 0.55
19 1 0.03
20 3 0.10
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.73
Consensus pattern (18 bp):
TTATTTTATTATTTTACT
Found at i:47956085 original size:21 final size:21
Alignment explanation
Indices: 47956031--47956098 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
47956021 AACCCAATTA
47956031 TTATTATTATTATTATTTT-CT
1 TTATT-TTATTATTATTTTACT
*
47956052 TTACTTTATTTATTATTTTACT
1 TTATTTTA-TTATTATTTTACT
*
47956074 TTATTTTATTATT-TATTAC-
1 TTATTTTATTATTATTTTACT
47956093 TTATTT
1 TTATTT
47956099 AGATATTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
19 6 0.14
20 8 0.19
21 19 0.45
22 9 0.21
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (21 bp):
TTATTTTATTATTATTTTACT
Found at i:47957164 original size:23 final size:23
Alignment explanation
Indices: 47957120--47957164 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
47957110 TAAAGCATAA
* * * *
47957120 AAAATATAAATAATAAATAAATC
1 AAAATAAAAAAAAGAAAAAAATC
47957143 AAAATAAAAAAAAGAAAAAAAT
1 AAAATAAAAAAAAGAAAAAAAT
47957165 ATAATTTGGG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (23 bp):
AAAATAAAAAAAAGAAAAAAATC
Found at i:47970805 original size:44 final size:44
Alignment explanation
Indices: 47970657--47971478 Score: 385
Period size: 44 Copynumber: 18.7 Consensus size: 44
47970647 TATTTAATCC
*
47970657 GCTCCACTGTAA-CTTCAGGGAGATAGGA-TAG-T-GTCTTCGATCT
1 GCTCCACTGTAATC-TCAGGGAGATAAGACT-GCTAG-CTTCGATCT
* *** * * *
47970700 GCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTGCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTGCTA-GCTTCGATCT
* * *
47970746 ACTCCACTGTAACCTCAGGGAGATAAGACCT-CTAGCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTGCTAGCTTCGATCT
* * ** * *
47970790 GCTCCACTGTAACCTCAGGGAGATAAGATCTGAATTTCTTTGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTG-CTAGCTTCGATCT
* * * * * *
47970836 ACTCCACTGTAACCTCAGGGAAATAATATCT-CTGGCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTGCTAGCTTCGATCT
* ** * *
47970880 GCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTGCTA-GCTTCGATCT
* * * *
47970926 GTTCCACTGTAATCTCAGGGAAATAAGAC--CT-GGTGCGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGACTGCTAGCTTCGATCT
* * * * * ** *
47970967 ACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTAGTTTTAATCC
1 GCTCCACTGTAATC-TCAGGGAGATAAGACTGC-TAGCTTCGATCT
* * * * *
47971011 GCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGACTGCTAGCTTCGATCT
* ** * *
47971055 GCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTGCTA-GCTTCGATCT
* * *
47971101 GCTCTACTGTAATCTCAGGGAGATAAGAC--CT-GGTGCGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGACTGCTAGCTTCGATCT
* * * * * ** *
47971142 ACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTA-TTTTAATCC
1 GCTCCACTGTAATC-TCAGGGAGATAAGACTGC-TAGCTTCGATCT
* * * * * * *
47971185 ACTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCAATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGACTGCTAGCTTCGATCT
* ** * *
47971229 GCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTGCTA-GCTTCGATCT
* * * *
47971275 GTTCCACTGTAATCTCAGGGAAATAAGAC--CT-GGTGCGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGACTGCTAGCTTCGATCT
* * * * * ** *
47971316 ACTCTACTGTAA-CTTCAGAGAGATAAGA-T-CATTGGTTTTAATCC
1 GCTCCACTGTAATC-TCAGGGAGATAAGACTGC--TAGCTTCGATCT
* * * * ** *
47971360 GCTCCACTGTAATCTCAGGGAGATAGGATTACCATATTTGATCT
1 GCTCCACTGTAATCTCAGGGAGATAAGACTGCTAGCTTCGATCT
* * * * * *
47971404 GCTCCGCTGTAATCTCAGGGAGATAGGATTTGCAATTCTTCGGTCT
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTGCTA-GCTTCGATCT
47971450 GCTCCACTGTAATCTCAGGGAGATAAGAC
1 GCTCCACTGTAATCTCAGGGAGATAAGAC
47971479 CTGTATAATG
Statistics
Matches: 586, Mismatches: 154, Indels: 76
0.72 0.19 0.09
Matches are distributed among these distances:
40 3 0.01
41 85 0.15
42 2 0.00
43 55 0.09
44 223 0.38
45 17 0.03
46 201 0.34
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
GCTCCACTGTAATCTCAGGGAGATAAGACTGCTAGCTTCGATCT
Found at i:47970810 original size:90 final size:88
Alignment explanation
Indices: 47970657--47971478 Score: 685
Period size: 90 Copynumber: 9.3 Consensus size: 88
47970647 TATTTAATCC
* * *
47970657 GCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGG
1 GCTCCACTGTAATC-TCAGGGAGATAAGACT-CTG-CTTCAATCTGCTCCGCTGTAATCTCAGGG
* *
47970720 AGATAAGATCTAAAATTCTGCGGTCT
63 AGATAAGATCTGAAATTCTTCGGTCT
* * * *
47970746 ACTCCACTGTAACCTCAGGGAGATAAGACCTCTAGCTTCAATCTGCTCCACTGTAACCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTCT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGA
* *
47970811 GATAAGATCTGAATTTCTTTGGTCT
64 GATAAGATCTGAAATTCTTCGGTCT
* * * *
47970836 ACTCCACTGTAACCTCAGGGAAATAATATCTCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGA-CTCT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGA
47970901 GATAAGATCTGAAATTCTTCGGTCT
64 GATAAGATCTGAAATTCTTCGGTCT
* * * * * * ** *
47970926 GTTCCACTGTAATCTCAGGGAAATAAGAC-CTGGTGCGATCTACTCTACTGTAA-CTTCAGAGAG
1 GCTCCACTGTAATCTCAGGGAGATAAGACTCTGCTTCAATCTGCTCCGCTGTAATC-TCAGGGAG
* * ** *
47970989 ATAAGATCCT-TAGTT-TT-AATCC
65 ATAAGAT-CTGAAATTCTTCGGTCT
* * *
47971011 GCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGACT-CT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGA
47971076 GATAAGATCTGAAATTCTTCGGTCT
64 GATAAGATCTGAAATTCTTCGGTCT
* * * * * ** *
47971101 GCTCTACTGTAATCTCAGGGAGATAAGAC-CTGGTGCGATCTACTCTACTGTAA-CTTCAGAGAG
1 GCTCCACTGTAATCTCAGGGAGATAAGACTCTGCTTCAATCTGCTCCGCTGTAATC-TCAGGGAG
* ** *
47971164 ATAAGATCCT--TATT-TT-AATCC
65 ATAAGAT-CTGAAATTCTTCGGTCT
* * * * *
47971185 ACTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAAGACT-CT-GCTTCAATCTGCTCCGCTGTAATCTCAGGGA
47971250 GATAAGATCTGAAATTCTTCGGTCT
64 GATAAGATCTGAAATTCTTCGGTCT
* * * * * * ** *
47971275 GTTCCACTGTAATCTCAGGGAAATAAGAC-CTGGTGCGATCTACTCTACTGTAA-CTTCAGAGAG
1 GCTCCACTGTAATCTCAGGGAGATAAGACTCTGCTTCAATCTGCTCCGCTGTAATC-TCAGGGAG
* ** *
47971338 ATAAGATCATTG--GTT-TT-AATCC
65 ATAAGATC--TGAAATTCTTCGGTCT
* * * **
47971360 GCTCCACTGTAATCTCAGGGAGATAGGATTACCAT-ATTTGATCTGCTCCGCTGTAATCTCAGGG
1 GCTCCACTGTAATCTCAGGGAGATAAGACT--C-TGCTTCAATCTGCTCCGCTGTAATCTCAGGG
* * *
47971424 AGATAGGATTTGCAATTCTTCGGTCT
63 AGATAAGATCTGAAATTCTTCGGTCT
47971450 GCTCCACTGTAATCTCAGGGAGATAAGAC
1 GCTCCACTGTAATCTCAGGGAGATAAGAC
47971479 CTGTATAATG
Statistics
Matches: 578, Mismatches: 120, Indels: 69
0.75 0.16 0.09
Matches are distributed among these distances:
84 26 0.04
85 55 0.10
86 16 0.03
87 128 0.22
88 78 0.13
89 36 0.06
90 237 0.41
91 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (88 bp):
GCTCCACTGTAATCTCAGGGAGATAAGACTCTGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATCTGAAATTCTTCGGTCT
Found at i:47971090 original size:175 final size:174
Alignment explanation
Indices: 47970586--47971481 Score: 1192
Period size: 175 Copynumber: 5.1 Consensus size: 174
47970576 TACTGCAACG
* * * * * *
47970586 TCAGGGAGATAATACTTGATGCGATCTTGCTCTGCTGTAACTTTAGAGAGATAAGATCCTT-TAT
1 TCAGGGAGATAAGACCTGGTGCGATC-TACTCTACTGTAACTTCAGAGAGATAAGATCCTTAT-T
* *
47970650 TTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGT-GTCTTCGATCTGCTCCGCTGTAA
64 TTAATCCGCTCCACTGTAATC-TCAGGGAGATAGGATTACTAG-CTTCAATCTGCTCCGCTGTAA
* * * *
47970712 TCTCAGGGAGATAAGATCTAAAATTCTGCGGTCTACTCCACTGTAACC
127 TCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
* * * * * * *
47970760 TCAGGGAGATAAGACCTCTAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAA
1 TCAGGGAGATAAGA-C-CT-GGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT---
* ** ** * * ** *
47970824 TTTCTTTGGTCTACTCCACTGTAACCTCAGGGAAATAATATCT-CTGGCTTCAATCTGCTCCGCT
60 TAT-TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCGCT
*
47970888 GTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATC
123 GTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
*
47970940 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
1 TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTA-TTT
*
47971005 TAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
65 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
*
47971070 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCTACTGTAATC
130 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
47971115 TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTATTTT
1 TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTATTTT
* * *
47971180 AATCCACTCCACTGTAATCTCAAGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
66 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
*
47971245 AGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATC
131 AGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
* * *
47971289 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTGGTTT
1 TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT-ATTT
* ** **
47971354 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACCATATTTGATCTGCTCCGCTGTAATCT
65 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
* * *
47971419 CAGGGAGATAGGATTTGCAATTCTTCGGTCTGCTCCACTGTAATC
130 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
47971464 TCAGGGAGATAAGACCTG
1 TCAGGGAGATAAGACCTG
47971482 TATAATGAAC
Statistics
Matches: 640, Mismatches: 67, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
174 179 0.28
175 282 0.44
176 27 0.04
177 38 0.06
178 5 0.01
179 29 0.05
180 78 0.12
181 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (174 bp):
TCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTATTTT
AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATC
Found at i:47971274 original size:349 final size:348
Alignment explanation
Indices: 47970586--47971481 Score: 1255
Period size: 349 Copynumber: 2.5 Consensus size: 348
47970576 TACTGCAACG
* * * * * * *
47970586 TCAGGGAGATAATACTTGATGCGATCTTGCTCTGCTGTAACTTTAGAGAGATAAGATCCTT-TAT
1 TCAGGGAAATAAGACCTGGTGCGATC-TACTCTACTGTAACTTCAGAGAGATAAGATCCTTGT-T
*
47970650 TTAATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGT-GTCTTCGATCTGCTCCGCTGTAAT
64 TTAATCCGCTCCACTGTAA-TTCAGGGAGATAGGATTACTAG-CTTCGATCTGCTCCGCTGTAAT
* * * *
47970713 CTCAGGGAGATAAGATCTAAAATTCTGCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTC
127 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGA-C-C
* * * * ** *
47970778 TAGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAATTTCTTTGGTCTACTCCAC
190 T-GCTGCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCT--ATATCTTTAATCCACTCCAC
* * *
47970843 TGTAACCTCAGGGAAATAATATCTCTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
252 TGTAACCTCAAGGAAATAAGATCTCTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
47970908 TCTGAAATTCTTCGGTCTGTTCCACTGTAATC
317 TCTGAAATTCTTCGGTCTGTTCCACTGTAATC
47970940 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAGTTT
1 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT-GTTT
*
47971005 TAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCT
65 TAATCCGCTCCACTGTAAT-TCAGGGAGATAGGATTACTAGCTTCGATCTGCTCCGCTGTAATCT
* *
47971070 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCTACTGTAATCTCAGGGAGATAAGACCTGGT
129 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGCT
* * * *
47971135 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TAT-TTTAATCCACTCCACTGTAAT
194 GCAATCTACTCCACTGTAACCTCAGAGAGATAAGAT-CTATATCTTTAATCCACTCCACTGTAAC
* * *
47971198 CTCAAGGAGATAGGAT-TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
258 CTCAAGGAAATAAGATCT-CTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
47971262 AATTCTTCGGTCTGTTCCACTGTAATC
322 AATTCTTCGGTCTGTTCCACTGTAATC
*
47971289 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTGGTTT
1 TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT-GTTT
* ** *
47971354 TAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACCATATTTGATCTGCTCCGCTGTAATCT
65 TAATCCGCTCCACTGTAAT-TCAGGGAGATAGGATTACTAGCTTCGATCTGCTCCGCTGTAATCT
* * *
47971419 CAGGGAGATAGGATTTGCAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTG
129 CAGGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTG
47971482 TATAATGAAC
Statistics
Matches: 491, Mismatches: 44, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
348 1 0.00
349 281 0.57
350 2 0.00
352 32 0.07
353 36 0.07
354 57 0.12
355 81 0.16
356 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (348 bp):
TCAGGGAAATAAGACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGTTTT
AATCCGCTCCACTGTAATTCAGGGAGATAGGATTACTAGCTTCGATCTGCTCCGCTGTAATCTCA
GGGAGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGCTGC
AATCTACTCCACTGTAACCTCAGAGAGATAAGATCTATATCTTTAATCCACTCCACTGTAACCTC
AAGGAAATAAGATCTCTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATT
CTTCGGTCTGTTCCACTGTAATC
Found at i:47973706 original size:6 final size:6
Alignment explanation
Indices: 47973692--47973754 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
47973682 TTTTGTTTTT
* * * *
47973692 TTTTTA TTTTGA TTTTTGA -TTT-- TTTTCA TTTTCA TTTTGA CTTTGA
1 TTTTGA TTTTGA -TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
47973738 TTTTGA TTTTGAA TTTT
1 TTTTGA TTTTG-A TTTT
47973755 CTTTTTCTTC
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
4 3 0.06
5 3 0.06
6 31 0.65
7 11 0.23
ACGTcount: A:0.16, C:0.05, G:0.10, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:47973731 original size:21 final size:22
Alignment explanation
Indices: 47973646--47973729 Score: 64
Period size: 22 Copynumber: 3.7 Consensus size: 22
47973636 CTTTTTCTCA
* *
47973646 TTTTCATTTTGATCTTT-ATTTT
1 TTTTCATTTTCATTTTTGA-TTT
* *
47973668 TTCTTCTTTCTTC-TTTTTGTTTTT
1 TT-TTCATT-TTCATTTTTG-ATTT
* *
47973692 TTTTTATTTTGATTTTTGATTT
1 TTTTCATTTTCATTTTTGATTT
47973714 TTTTCATTTTCATTTT
1 TTTTCATTTTCATTTT
47973730 GACTTTGATT
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
22 21 0.45
23 19 0.40
24 7 0.15
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.76
Consensus pattern (22 bp):
TTTTCATTTTCATTTTTGATTT
Found at i:47981331 original size:3 final size:3
Alignment explanation
Indices: 47981323--47981349 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
47981313 CTTCATTCTT
47981323 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
47981350 GTAAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:47986371 original size:19 final size:19
Alignment explanation
Indices: 47986330--47986383 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
47986320 AATACGCACG
*
47986330 TTTCATTTTGGTTCTTTAA
1 TTTCATTTTGATTCTTTAA
*
47986349 TTTCATTTT-ATTTTTTAA
1 TTTCATTTTGATTCTTTAA
* *
47986367 TTTTCCTTATGATTCTT
1 -TTTCATTTTGATTCTT
47986384 GGTTTTGGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 7 0.25
19 16 0.57
20 5 0.18
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.67
Consensus pattern (19 bp):
TTTCATTTTGATTCTTTAA
Found at i:47989407 original size:26 final size:26
Alignment explanation
Indices: 47989347--47989415 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 26
47989337 CGAAATTGAT
* *
47989347 TTGCTCACATAAGCTGACATATTTGGG
1 TTGCTCACACAAGCT-TCATATTTGGG
47989374 TTGCTCACACAAGCTTCA-ATTTAGGG
1 TTGCTCACACAAGCTTCATATTT-GGG
47989400 TTGCTCACACAAGCTT
1 TTGCTCACACAAGCTT
47989416 TAGAGATTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
25 4 0.10
26 21 0.54
27 14 0.36
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
TTGCTCACACAAGCTTCATATTTGGG
Found at i:47992461 original size:25 final size:25
Alignment explanation
Indices: 47992409--47992491 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 25
47992399 TAGCTGGAAA
* * * *
47992409 GAGCGTCCCGATATTAGCTC-TCAT
1 GAGCATCCCGTTAATAGCTCTTCGT
*
47992433 GAGCATCCCGTTATATAGTTCTT-GT
1 GAGCATCCCGTTA-ATAGCTCTTCGT
*
47992458 GAGCTTCCCGTTAATAGCTCTTCG-
1 GAGCATCCCGTTAATAGCTCTTCGT
47992482 GAGCATCCCG
1 GAGCATCCCG
47992492 ATCGGTTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
24 28 0.58
25 19 0.40
26 1 0.02
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (25 bp):
GAGCATCCCGTTAATAGCTCTTCGT
Found at i:47992559 original size:25 final size:26
Alignment explanation
Indices: 47992531--47992608 Score: 72
Period size: 25 Copynumber: 3.1 Consensus size: 26
47992521 TACACCACAA
* *
47992531 CTCTTATGAGCGTCCCGATATATA-G
1 CTCTTATGAGCTTCCCGATATAAAGG
** *
47992556 CTCTTCGGAGCTTCCCG-TTTAAAGG
1 CTCTTATGAGCTTCCCGATATAAAGG
*
47992581 CTCTTCATGAGCTTCCCGAT-TAATGG
1 CTCTT-ATGAGCTTCCCGATATAAAGG
47992607 CT
1 CT
47992609 ATCCAGCGTT
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
24 4 0.10
25 20 0.48
26 17 0.40
27 1 0.02
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (26 bp):
CTCTTATGAGCTTCCCGATATAAAGG
Found at i:47992597 original size:26 final size:25
Alignment explanation
Indices: 47992538--47992608 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 25
47992528 CAACTCTTAT
* *
47992538 GAGCGTCCCGATATATA-GCTCTTCG
1 GAGCTTCCCGAT-TAAAGGCTCTTCG
* *
47992563 GAGCTTCCCGTTTAAAGGCTCTTCAT
1 GAGCTTCCCGATTAAAGGCTCTTC-G
*
47992589 GAGCTTCCCGATTAATGGCT
1 GAGCTTCCCGATTAAAGGCT
47992609 ATCCAGCGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 3 0.08
25 17 0.45
26 18 0.47
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.31
Consensus pattern (25 bp):
GAGCTTCCCGATTAAAGGCTCTTCG
Found at i:47993019 original size:23 final size:23
Alignment explanation
Indices: 47992989--47993035 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
47992979 GAATGGTAAG
47992989 TTAAATTCCACATTATACAAACT
1 TTAAATTCCACATTATACAAACT
* *
47993012 TTAAATTCCACGTTATACGAACT
1 TTAAATTCCACATTATACAAACT
47993035 T
1 T
47993036 ACTAACCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.21, G:0.04, T:0.36
Consensus pattern (23 bp):
TTAAATTCCACATTATACAAACT
Found at i:47996705 original size:129 final size:129
Alignment explanation
Indices: 47996323--47997186 Score: 1329
Period size: 129 Copynumber: 6.7 Consensus size: 129
47996313 AGGTAAAATC
* * * * * **
47996323 CGCCATCTTTGATCTGCTCCACTATTACGTAGGGAGATGAGATCTG-ATATTT-CCAACCTATTC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTA-ATTTCCCAACCTATTC
* * * * *
47996386 TACTGCTGACCAAGGAGATAGGACTTGTGGCTTAATTCTGCTTCCTTACTCTTGAAGATAAGATT
65 CACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* * * * *
47996451 CGTCGTCTTCGATCTGCTCTGATACTGCTTAGGGAGACAAGATCTGTAATTT-TCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
* * *
47996515 ACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTTCTTACTCTTGAAGATAAGATT
66 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* * *
47996579 CGCCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAAACAAGATCTGTAATTTCCCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
* **
47996644 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGTTTCCTTACTTTTGAAGATAAGATT
66 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* * *
47996708 CGTCATCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTATAATTTCCCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
** *
47996773 ACTATTGACCAGGGATATAGGACTTGTGGCTTAAATCTACTTCCTTACACTTGAAGATAAGATT
66 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* *
47996837 TGCCGTCTTCGATCTACTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
* * *
47996902 ACTACTAACCAGGGATATAAGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
66 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
47996966 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
*
47997031 ACTGGTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
66 ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* * *
47997095 CGCCGTATTCGATCTGCTCCGCTATTGCTTAGGGAGATAAGATCTGTAATTTCCCAACCTATTCT
1 CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
47997160 ACTGCTGACCAGGGATATAGGACTTGT
66 ACTGCTGACCAGGGATATAGGACTTGT
47997187 AATCTTCAAC
Statistics
Matches: 677, Mismatches: 57, Indels: 3
0.92 0.08 0.00
Matches are distributed among these distances:
128 157 0.23
129 520 0.77
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (129 bp):
CGCCGTCTTCGATCTGCTCCGCTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCC
ACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
Found at i:47997208 original size:44 final size:44
Alignment explanation
Indices: 47997149--47997444 Score: 414
Period size: 44 Copynumber: 6.7 Consensus size: 44
47997139 TGTAATTTCC
* ** *
47997149 CAACCTATTCTACTGCTGACCAGGGA-TATAGGACTTGTAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGT-TAGGACTTGCAATCTT
47997193 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
* *
47997237 CTACCTATTCCACTGCTGGTCAAGGAGTTAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
*
47997281 CAGCCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
* * * * * *
47997325 CTACCTATTCCTCTGCTAGTCAGGGAGATAGGACTTACAGTCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
* * *
47997369 CAACCTATTCCACTGCTGGTCAGAGAGCTAGGACTTACAATCTT
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
* *
47997413 AAACCTATTCCACTGCTGGTCAGGGAGCTAGG
1 CAACCTATTCCACTGCTGGTCAGGGAGTTAGG
47997445 TTTTGTGATT
Statistics
Matches: 227, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
44 226 1.00
45 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (44 bp):
CAACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTGCAATCTT
Found at i:47998730 original size:21 final size:22
Alignment explanation
Indices: 47998706--47998746 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
47998696 TAGCCTGTCC
*
47998706 ATTTTTACTTTT-CATTTTTTT
1 ATTTTCACTTTTCCATTTTTTT
*
47998727 ATTTTCATTTTTCCATTTTT
1 ATTTTCACTTTTCCATTTTT
47998747 GACTCAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (22 bp):
ATTTTCACTTTTCCATTTTTTT
Found at i:47998731 original size:14 final size:15
Alignment explanation
Indices: 47998707--47998738 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
47998697 AGCCTGTCCA
47998707 TTTTTACTTTTCATT
1 TTTTTACTTTTCATT
47998722 TTTTTA-TTTTCATT
1 TTTTTACTTTTCATT
47998736 TTT
1 TTT
47998739 CCATTTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTACTTTTCATT
Found at i:47999615 original size:20 final size:21
Alignment explanation
Indices: 47999592--47999634 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
47999582 TGGCCTCTCC
*
47999592 TTTTT-TTTC-CGTTTTTCCT
1 TTTTTCTTTCTCGTTTTTCAT
*
47999611 TTTTTCTTTCTCTTTTTTCAT
1 TTTTTCTTTCTCGTTTTTCAT
47999632 TTT
1 TTT
47999635 CATTTTGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 4 0.20
21 11 0.55
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTTCTTTCTCGTTTTTCAT
Found at i:48005271 original size:14 final size:14
Alignment explanation
Indices: 48005247--48005285 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
48005237 CATATAGAGA
*
48005247 AAAGAAAAAAAATAG
1 AAAGAAAAAAACT-G
48005262 AAAGAAAAAAACTG
1 AAAGAAAAAAACTG
48005276 AAA-AAAAAAA
1 AAAGAAAAAAA
48005286 GAAAACAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 7 0.30
14 4 0.17
15 12 0.52
ACGTcount: A:0.82, C:0.03, G:0.10, T:0.05
Consensus pattern (14 bp):
AAAGAAAAAAACTG
Found at i:48005279 original size:21 final size:22
Alignment explanation
Indices: 48005255--48005302 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
48005245 GAAAAGAAAA
*
48005255 AAAATAGAAAGAAAA-AAACTG
1 AAAATAAAAAGAAAACAAACTG
*
48005276 AAAAAAAAAAGAAAACAAACTG
1 AAAATAAAAAGAAAACAAACTG
*
48005298 TAAAT
1 AAAAT
48005303 CACCTTTGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.73, C:0.06, G:0.10, T:0.10
Consensus pattern (22 bp):
AAAATAAAAAGAAAACAAACTG
Found at i:48005279 original size:22 final size:22
Alignment explanation
Indices: 48005253--48005297 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
48005243 GAGAAAAGAA
48005253 AAAAAATAGAAAGAAAA-AAACTG
1 AAAAAA-A-AAAGAAAACAAACTG
48005276 AAAAAAAAAAGAAAACAAACTG
1 AAAAAAAAAAGAAAACAAACTG
48005298 TAAATCACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 8 0.38
22 7 0.33
23 6 0.29
ACGTcount: A:0.76, C:0.07, G:0.11, T:0.07
Consensus pattern (22 bp):
AAAAAAAAAAGAAAACAAACTG
Found at i:48013638 original size:20 final size:18
Alignment explanation
Indices: 48013591--48013639 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
48013581 CAAGATAAAC
48013591 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
48013608 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
48013628 ATTAAATTAATA
1 ATTAAATTAATA
48013640 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:48013685 original size:37 final size:38
Alignment explanation
Indices: 48013591--48013687 Score: 98
Period size: 37 Copynumber: 2.6 Consensus size: 38
48013581 CAAGATAAAC
*
48013591 ATTAAATTAA-ATTTAA-TATTAAGATAATCACTTTAAT
1 ATTAAATTAATATTAAACTATTAAGATAATCAC-TTAAT
*
48013628 ATTAAATTAATA-AAATACTATTAAGATAAGT-A-TTAA-
1 ATTAAATTAATATTAA-ACTATTAAGATAA-TCACTTAAT
48013664 ATTAAATTTAATATTAAACTATTA
1 ATTAAA-TTAATATTAAACTATTA
48013688 TTGTTTTTGG
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
36 6 0.12
37 28 0.55
38 4 0.08
39 12 0.24
40 1 0.02
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (38 bp):
ATTAAATTAATATTAAACTATTAAGATAATCACTTAAT
Found at i:48016152 original size:61 final size:61
Alignment explanation
Indices: 48016079--48016195 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 61
48016069 CACAAATTGT
* * * *
48016079 TTGTTTATTTTGTGACATTAAGAAAGCGTCATCAAAAA-TAGATTAGAAACATCATGAAATG
1 TTGTATATTTTGTGACATTAAGAAAACATCAT-AAAAATTAGATTAAAAACATCATGAAATG
* *
48016140 TTGTATATTTTGTGACATTTAGAAAACATCATAAAAATTTAGTTTAAAAACATCAT
1 TTGTATATTTTGTGACATTAAGAAAACATCATAAAAA-TTAGATTAAAAACATCAT
48016196 AAAAAATACA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 5 0.10
61 28 0.58
62 15 0.31
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (61 bp):
TTGTATATTTTGTGACATTAAGAAAACATCATAAAAATTAGATTAAAAACATCATGAAATG
Found at i:48016208 original size:25 final size:25
Alignment explanation
Indices: 48016157--48016208 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
48016147 TTTTGTGACA
**
48016157 TTTAGAAAACATCATAAAAATTTAG
1 TTTAGAAAACATCATAAAAATACAG
48016182 TTTA-AAAACATCATAAAAAATACAG
1 TTTAGAAAACATCAT-AAAAATACAG
48016207 TT
1 TT
48016209 AGTTTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.31
Consensus pattern (25 bp):
TTTAGAAAACATCATAAAAATACAG
Found at i:48022801 original size:96 final size:96
Alignment explanation
Indices: 48022684--48022871 Score: 241
Period size: 96 Copynumber: 2.0 Consensus size: 96
48022674 CTTACTTTCT
* * **
48022684 TCTCTAGTTGGATATTTAATTGGACATTAGAATTCCTTATGATCTTCTGAACTACACCAATAAAA
1 TCTCTAGTTGAATATTTAATTGAACATTAGAAACCCTTATGATCTTCTGAACTACACCAATAAAA
* *
48022749 TTGTACAAAAGGTGATATCTCAATCGTCTTC
66 TTGCACAAAAGGTGATAACTCAATCGTCTTC
* * * * * ** * *
48022780 TCTCTATTTGAATATTTAATTGAACATTGGAAACCCTTGTGATCTTTTGAATTGTACCAGTAACA
1 TCTCTAGTTGAATATTTAATTGAACATTAGAAACCCTTATGATCTTCTGAACTACACCAATAAAA
48022845 TTGCACAAAAGGTGATAACTCAATCGT
66 TTGCACAAAAGGTGATAACTCAATCGT
48022872 ATTCCTCCTT
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 77 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.36
Consensus pattern (96 bp):
TCTCTAGTTGAATATTTAATTGAACATTAGAAACCCTTATGATCTTCTGAACTACACCAATAAAA
TTGCACAAAAGGTGATAACTCAATCGTCTTC
Found at i:48027564 original size:31 final size:33
Alignment explanation
Indices: 48027482--48027558 Score: 79
Period size: 33 Copynumber: 2.3 Consensus size: 33
48027472 GTTGTTCAAT
* *
48027482 ATTAATCTTTTATA-ATTAAAGGTAAATAAGATAA
1 ATTAAT-TTTTATATATTAGA-TTAAATAAGATAA
48027516 ATTAATTTTTATATATTAGATTAAAT-AG-TAA
1 ATTAATTTTTATATATTAGATTAAATAAGATAA
48027547 ATTGATATTTTT
1 ATT-A-ATTTTT
48027559 TTATTAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
31 6 0.16
32 3 0.08
33 18 0.47
34 11 0.29
ACGTcount: A:0.44, C:0.01, G:0.08, T:0.47
Consensus pattern (33 bp):
ATTAATTTTTATATATTAGATTAAATAAGATAA
Found at i:48032661 original size:12 final size:12
Alignment explanation
Indices: 48032640--48032670 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
48032630 TTAACAACCG
48032640 TAACTACCATCT
1 TAACTACCATCT
*
48032652 TAACTTCCATCT
1 TAACTACCATCT
48032664 TAACTAC
1 TAACTAC
48032671 TAACTATCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (12 bp):
TAACTACCATCT
Found at i:48036147 original size:108 final size:107
Alignment explanation
Indices: 48035960--48036286 Score: 478
Period size: 109 Copynumber: 3.0 Consensus size: 107
48035950 TGGATTAAAA
* * * *
48035960 TTTAAGAGGATATTTGGCTATTTGGTTAAATGAG--AAATCGAAACCCAGCACATTAGGGCACAT
1 TTTAAAAGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
* *
48036023 TTCCTCGAATTTCCAAACGCAAAATATTGTCTTATTTCGAAAT
66 TTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTT-GAAAT
* *
48036066 TTTAAAAGGATATTTGGCTATTTGATCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
1 TTTAAAAGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
*
48036131 TTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAATT
66 TTTCTCGAATTTCCAAACGCAAAATATTGCCTTA-TTTGAAA-T
* * *
48036175 TTTAAAAGGATATTTAGCTATTTGGTTGAACGAAAAAAATCAAAACCCAGCACATTAGGGCACGT
1 TTTAAAAGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
*
48036240 TTTCTTGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAAT
66 TTTCTCGAATTTCCAAACGCAAAATATTGCCTTA-TTTG-AAAT
48036284 TTT
1 TTT
48036287 CCTTTTTTGA
Statistics
Matches: 199, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
106 29 0.15
108 63 0.32
109 104 0.52
110 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (107 bp):
TTTAAAAGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGT
TTTCTCGAATTTCCAAACGCAAAATATTGCCTTATTTGAAAT
Found at i:48036359 original size:15 final size:15
Alignment explanation
Indices: 48036335--48036365 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48036325 AATAAATATG
*
48036335 ATAATGTGAACAAAA
1 ATAATATGAACAAAA
48036350 ATAATATGAACAAAA
1 ATAATATGAACAAAA
48036365 A
1 A
48036366 CGAATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.10, T:0.19
Consensus pattern (15 bp):
ATAATATGAACAAAA
Found at i:48036797 original size:18 final size:18
Alignment explanation
Indices: 48036746--48036810 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
48036736 ATATAAAAAT
*
48036746 TATAATATATAATATATATA
1 TATAA-ATA-AATAAATATA
* **
48036766 TATAAGTACGTAAATATA
1 TATAAATAAATAAATATA
48036784 TATAAATAAATAAAT-TA
1 TATAAATAAATAAATATA
*
48036801 TAAAAATAAA
1 TATAAATAAA
48036811 AATGCATGCA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
17 11 0.30
18 19 0.51
19 2 0.05
20 5 0.14
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (18 bp):
TATAAATAAATAAATATA
Found at i:48036807 original size:17 final size:18
Alignment explanation
Indices: 48036776--48036810 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
48036766 TATAAGTACG
*
48036776 TAAATATATATAAATAAA
1 TAAATATATAAAAATAAA
48036794 TAAAT-TATAAAAATAAA
1 TAAATATATAAAAATAAA
48036811 AATGCATGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAATATATAAAAATAAA
Found at i:48036918 original size:12 final size:12
Alignment explanation
Indices: 48036890--48036919 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
48036880 AAATAAATAA
*
48036890 ATAAAAATAATC
1 ATAATAATAATC
48036902 ATAATAATAATC
1 ATAATAATAATC
48036914 ATAATA
1 ATAATA
48036920 GATTTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (12 bp):
ATAATAATAATC
Found at i:48037907 original size:26 final size:26
Alignment explanation
Indices: 48037861--48037911 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
48037851 GTCAGAGGCG
*
48037861 GCGGTGGCAGGGTAAGTGGGCTAGGT
1 GCGGCGGCAGGGTAAGTGGGCTAGGT
*
48037887 GCGGCGGCTAGGGTTAG-GGGCTAGG
1 GCGGCGGC-AGGGTAAGTGGGCTAGG
48037912 GTTTTCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.14, C:0.14, G:0.55, T:0.18
Consensus pattern (26 bp):
GCGGCGGCAGGGTAAGTGGGCTAGGT
Found at i:48038789 original size:263 final size:264
Alignment explanation
Indices: 48038337--48039039 Score: 1025
Period size: 263 Copynumber: 2.7 Consensus size: 264
48038327 TTCGCTGTTA
** * * * * * * * **
48038337 TTGATCTGCTCTGCTACTGCTTAGAGAGATAGGATCCAAAATCTTTAACCTACTTCACTACTATT
1 TTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTCAACCTACTCCACTACTGCT
* * * *
48038402 TAGGAAGATATGACTAATGGCTTAAATCAGCTTCTCCACTATCTTGGGAAGATAAGATTCACCGT
66 TAGGAAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCAT
* * * *
48038467 CTTTGATCTGCTCCACTACTGCTTAGGGATACAGAATCTACAATCTTTGACCTACTCCACTACTG
131 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTTAACCTACTCCACTACTG
* * * *
48038532 CTTA-GGAGATAGGACTAATGGCTTAAATCTGCTTCTTCATTATCTTGGGAAGATAAGATTCACC
196 CATAGGGAGATAAGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACC
48038596 ATCT
261 ATCT
* *
48038600 TTGATCTGCTCCACTACTACTTAGGGAGACAGAATCTACAATCTTCAACCTACTCCACTATTGCT
1 TTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTCAACCTACTCCACTACTGCT
* * *
48038665 TAGGAAGATAGGACTAATGGCTTAAATCTGCTTCTCCACAATCTTGGAAAGACAAGATTCGCCAT
66 TAGGAAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCAT
* *
48038730 CTTCGATCTGCTCAACTACTGCTTAGGGGGACAGAATCTGCAATCTTTAACCTACTCCACTACTG
131 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTTAACCTACTCCACTACTG
* *
48038795 CATAGGGAGATAAGACTAATGGCTTAAATTTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCC
196 CATAGGGAGATAAGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACC
48038860 ATCT
261 ATCT
* *
48038864 TCGATCTGCTCCACTACTGCTTATGGG-GACAGAATCTGCAATCTTCAACCTACTCCACTACTGC
1 TTGATCTGCTCCACTACTGCTTA-GGGAGACAGAATCTACAATCTTCAACCTACTCCACTACTGC
* * *
48038928 TTAGG-AGATAGGACTAATGGTTTAAATCTGGTTCTCCACTATCTTGGGAAGATAAGATTTGCCA
65 TTAGGAAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCA
* *
48038992 TCTTCGATCTGCTCCACTACTGCTTAAGGAGACAGAATCTGTAATCTT
130 TCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTT
48039040 CGATCTACTT
Statistics
Matches: 392, Mismatches: 46, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
263 269 0.69
264 120 0.31
265 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (264 bp):
TTGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTCAACCTACTCCACTACTGCT
TAGGAAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCAT
CTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTTAACCTACTCCACTACTG
CATAGGGAGATAAGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCACC
ATCT
Found at i:48039048 original size:131 final size:131
Alignment explanation
Indices: 48038339--48039040 Score: 983
Period size: 132 Copynumber: 5.3 Consensus size: 131
48038329 CGCTGTTATT
** * * * *** * * **
48038339 GATCTGCTCTGCTACTGCTTAGAGAGATAGGATCCAAAATCTTTAACCTACTTCACTACTATTTA
1 GATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
* * * *
48038404 GGAAGATATGACTAATGGCTTAAATCAGCTTCTCCACTATCTTGGGAAGATAAGATTCACCGTCT
66 GG-AGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCATCT
*
48038469 TT
130 TC
* * **
48038471 GATCTGCTCCACTACTGCTTAGGGATACAGAATCTACAATCTTTGACCTACTCCACTACTGCTTA
1 GATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
* * *
48038536 GGAGATAGGACTAATGGCTTAAATCTGCTTCTTCATTATCTTGGGAAGATAAGATTCACCATCTT
66 GGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCATCTT
*
48038601 T
131 C
* * *
48038602 GATCTGCTCCACTACTACTTAGGGAGACAGAATCTACAATCTTCAACCTACTCCACTATTGCTTA
1 GATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
* * *
48038667 GGAAGATAGGACTAATGGCTTAAATCTGCTTCTCCACAATCTTGGAAAGACAAGATTCGCCATCT
66 GG-AGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCATCT
48038732 TC
130 TC
* * * *
48038734 GATCTGCTCAACTACTGCTTAGGGGGACAGAATCTGCAATCTTTAACCTACTCCACTACTGCATA
1 GATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
* *
48038799 GGGAGATAAGACTAATGGCTTAAATTTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCATCT
66 -GGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCATCT
48038864 TC
130 TC
48038866 GATCTGCTCCACTACTGCTTATGGG-GACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
1 GATCTGCTCCACTACTGCTTA-GGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTT
* * *
48038930 AGGAGATAGGACTAATGGTTTAAATCTGGTTCTCCACTATCTTGGGAAGATAAGATTTGCCATCT
65 AGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCATCT
48038995 TC
130 TC
* *
48038997 GATCTGCTCCACTACTGCTTAAGGAGACAGAATCTGTAATCTTC
1 GATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTC
48039041 GATCTACTTT
Statistics
Matches: 515, Mismatches: 51, Indels: 9
0.90 0.09 0.02
Matches are distributed among these distances:
130 2 0.00
131 221 0.43
132 287 0.56
133 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (131 bp):
GATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
GGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGGAAGATAAGATTCGCCATCTT
C
Found at i:48039086 original size:46 final size:46
Alignment explanation
Indices: 48039035--48039505 Score: 789
Period size: 46 Copynumber: 10.2 Consensus size: 46
48039025 AGAATCTGTA
** *
48039035 ATCTTCGATCTACTTTGCTGCCAAATACAGGAAGACAAGATATGCT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
48039081 ATCTTCGATCTACTCCACTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * *
48039127 TTCTTCGATCTACTCCGCTGTCAAATACACGAAGACAAGATCTACT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
48039173 ATCTTCGATCTACTCCGCTGCCAAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* *
48039219 ATCTTCGATCTACTCCGCTGCCAAATAAAGGAAGACAAGATCTACT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
48039265 ATCTTCGATCTACTCCGCTGCCAAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
48039311 ATCTTCGATCTACTCTGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
48039357 AACTTCGATCTACTCTGCTGCCAAATACAGGAAGACAAGATCCGCT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
48039403 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
48039449 ATCTTCGATCTACTCCGCTGCCAAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
48039495 ATCTTCGATCT
1 ATCTTCGATCT
48039506 GTTCTCTAGG
Statistics
Matches: 399, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 399 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (46 bp):
ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
Found at i:48040739 original size:6 final size:6
Alignment explanation
Indices: 48040728--48040763 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
48040718 TTGGCCTCTC
*
48040728 CTTTTT CTTTTT CTTTTT C-TTTT CTTCTT CTTTTT C
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT C
48040764 AAAATATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:48040750 original size:11 final size:11
Alignment explanation
Indices: 48040728--48040761 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
48040718 TTGGCCTCTC
48040728 CTTTTTCTTTTT
1 CTTTTTC-TTTT
48040740 CTTTTTCTTTT
1 CTTTTTCTTTT
*
48040751 CTTCTTCTTTT
1 CTTTTTCTTTT
48040762 TCAAAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
CTTTTTCTTTT
Found at i:48040752 original size:17 final size:17
Alignment explanation
Indices: 48040730--48040763 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
48040720 GGCCTCTCCT
*
48040730 TTTTCTTTTTCTTTTTC
1 TTTTCTTCTTCTTTTTC
48040747 TTTTCTTCTTCTTTTTC
1 TTTTCTTCTTCTTTTTC
48040764 AAAATATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTCTTCTTCTTTTTC
Found at i:48041126 original size:1 final size:1
Alignment explanation
Indices: 48041120--48041198 Score: 50
Period size: 1 Copynumber: 79.0 Consensus size: 1
48041110 CCGGTAGAGA
* * * * * * * * * * *
48041120 TTTTTTTTGTTTTTTTTGTTTCTTTGTTTCTTTGTTTTTTGTTTTTTGTTTTATGTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
48041185 TTTTTGTTTTTTTT
1 TTTTTTTTTTTTTT
48041199 GCATCCCATA
Statistics
Matches: 54, Mismatches: 24, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.01, C:0.03, G:0.11, T:0.85
Consensus pattern (1 bp):
T
Found at i:48041134 original size:7 final size:7
Alignment explanation
Indices: 48041131--48041196 Score: 78
Period size: 7 Copynumber: 8.9 Consensus size: 7
48041121 TTTTTTTGTT
48041131 TTTTTTG
1 TTTTTTG
48041138 TTTCTTTG
1 TTT-TTTG
48041146 TTTCTTTG
1 TTT-TTTG
48041154 TTTTTTG
1 TTTTTTG
48041161 TTTTTTG
1 TTTTTTG
*
48041168 TTTTATG
1 TTTTTTG
*
48041175 TTTTGTTTT
1 -TTT-TTTG
48041184 TTTTTTG
1 TTTTTTG
48041191 TTTTTT
1 TTTTTT
48041197 TTGCATCCCA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
7 29 0.56
8 21 0.40
9 2 0.04
ACGTcount: A:0.02, C:0.03, G:0.12, T:0.83
Consensus pattern (7 bp):
TTTTTTG
Found at i:48041134 original size:8 final size:8
Alignment explanation
Indices: 48041121--48041197 Score: 81
Period size: 8 Copynumber: 9.9 Consensus size: 8
48041111 CGGTAGAGAT
48041121 TTTTTTTG
1 TTTTTTTG
48041129 TTTTTTTTG
1 -TTTTTTTG
*
48041138 TTTCTTTG
1 TTTTTTTG
*
48041146 TTTCTTTG
1 TTTTTTTG
48041154 -TTTTTTG
1 TTTTTTTG
48041161 -TTTTTTG
1 TTTTTTTG
*
48041168 -TTTTATG
1 TTTTTTTG
48041175 TTTTGTTT-
1 TTTT-TTTG
48041183 TTTTTTTG
1 TTTTTTTG
48041191 TTTTTTT
1 TTTTTTT
48041198 TGCATCCCAT
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
7 22 0.36
8 29 0.48
9 10 0.16
ACGTcount: A:0.01, C:0.03, G:0.12, T:0.84
Consensus pattern (8 bp):
TTTTTTTG
Found at i:48041167 original size:30 final size:30
Alignment explanation
Indices: 48041122--48041196 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 30
48041112 GGTAGAGATT
*
48041122 TTTTTTGTTTTTTTTGTTTCTTTG-TTTCTTTG
1 TTTTTTG--TTTTTTGTTT-TATGTTTTCTTTG
* *
48041154 TTTTTTGTTTTTTGTTTTATGTTTTGTTTT
1 TTTTTTGTTTTTTGTTTTATGTTTTCTTTG
48041184 TTTTTTGTTTTTT
1 TTTTTTGTTTTTT
48041197 TTGCATCCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 29 0.74
32 7 0.18
ACGTcount: A:0.01, C:0.03, G:0.12, T:0.84
Consensus pattern (30 bp):
TTTTTTGTTTTTTGTTTTATGTTTTCTTTG
Found at i:48044673 original size:109 final size:108
Alignment explanation
Indices: 48044422--48044740 Score: 435
Period size: 109 Copynumber: 3.0 Consensus size: 108
48044412 AATTTAAGAT
* * * * * **
48044422 GATATTTGGCTATTTGGTTAAACGAG--AAATCGAAACCCAGCACATTAGTGCACATTGCCTCGA
1 GATATTTAGCTATTTGGTTGAACGAGAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCGA
* * *
48044485 ATTTCCAAACACAAAATATTGTCTTATTTCGAAATTTTAAAAG
66 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTTAAAAG
* * *
48044528 GATATTTGGCTATTTGATCGAACGAGAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCGA
1 GATATTTAGCTATTTGGTTGAACGAGAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCGA
* **
48044593 ATTTCCAAACGTAAAACGTTGCCTTATTTTGAAAGTTTTAAAAG
66 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAA-TTTTAAAAG
*
48044637 GATGTTTAGCTATTTGGTTGAACGAGAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCGA
1 GATATTTAGCTATTTGGTTGAACGAGAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCGA
* *
48044702 ATCTCCAAACGCAAAATATTGCCTTACTTTGAAAATTTT
66 ATTTCCAAACGCAAAATATTGCCTTATTTTG-AAATTTT
48044741 TCCTTTTTTG
Statistics
Matches: 186, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
106 23 0.12
108 60 0.32
109 100 0.54
110 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (108 bp):
GATATTTAGCTATTTGGTTGAACGAGAAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCGA
ATTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTTAAAAG
Found at i:48044814 original size:15 final size:15
Alignment explanation
Indices: 48044790--48044820 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48044780 AATAAATATG
*
48044790 ATAATGTGAACAAAA
1 ATAATATGAACAAAA
48044805 ATAATATGAACAAAA
1 ATAATATGAACAAAA
48044820 A
1 A
48044821 CGAATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.10, T:0.19
Consensus pattern (15 bp):
ATAATATGAACAAAA
Found at i:48045382 original size:12 final size:12
Alignment explanation
Indices: 48045354--48045383 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
48045344 GAGGAAATAA
*
48045354 ATAAAAATAATC
1 ATAATAATAATC
48045366 ATAATAATAATC
1 ATAATAATAATC
48045378 ATAATA
1 ATAATA
48045384 GATTTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (12 bp):
ATAATAATAATC
Found at i:48047318 original size:17 final size:17
Alignment explanation
Indices: 48047296--48047331 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
48047286 AAAAATATCA
* *
48047296 AATTAAATTATTTTTTC
1 AATTAAATAATCTTTTC
48047313 AATTAAATAATCTTTTC
1 AATTAAATAATCTTTTC
48047330 AA
1 AA
48047332 CCCAACTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTAAATAATCTTTTC
Found at i:48050295 original size:3 final size:3
Alignment explanation
Indices: 48050287--48050327 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
48050277 GGAAGGAGAA
* * *
48050287 GAT GAT GAT GAT GAT GAC GAT GAT GAC GAC GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
48050328 GGAAGAGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.34, C:0.07, G:0.34, T:0.24
Consensus pattern (3 bp):
GAT
Found at i:48050308 original size:12 final size:12
Alignment explanation
Indices: 48050287--48050327 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
48050277 GGAAGGAGAA
*
48050287 GATGATGATGAT
1 GATGACGATGAT
48050299 GATGACGATGAT
1 GATGACGATGAT
*
48050311 GACGACGATGAT
1 GATGACGATGAT
48050323 GATGA
1 GATGA
48050328 GGAAGAGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.34, C:0.07, G:0.34, T:0.24
Consensus pattern (12 bp):
GATGACGATGAT
Found at i:48055466 original size:32 final size:33
Alignment explanation
Indices: 48055430--48055501 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
48055420 GACTTTTATG
*
48055430 AAATATTTT-TAAAGAATC-TGCCAAACAAAAGA
1 AAATATTTTACAAAGAATCAT-CCAAACAAAAGA
* **
48055462 AAATATTTTACAAAGATTCATCCAAACACCAGA
1 AAATATTTTACAAAGAATCATCCAAACAAAAGA
48055495 AAATATT
1 AAATATT
48055502 AGCTTTTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 9 0.26
33 24 0.71
34 1 0.03
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.26
Consensus pattern (33 bp):
AAATATTTTACAAAGAATCATCCAAACAAAAGA
Found at i:48055717 original size:13 final size:13
Alignment explanation
Indices: 48055699--48055727 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
48055689 ATAGTGATAA
48055699 AATTCCAATTTGT
1 AATTCCAATTTGT
48055712 AATTCCAATTTGT
1 AATTCCAATTTGT
48055725 AAT
1 AAT
48055728 GACGATGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (13 bp):
AATTCCAATTTGT
Found at i:48056067 original size:4 final size:4
Alignment explanation
Indices: 48056058--48056118 Score: 50
Period size: 4 Copynumber: 14.2 Consensus size: 4
48056048 CAAATAAAGG
* * *
48056058 AATA AATA AATTTA AATA AATA AATG AATG AATG AATA ATATA TAATA
1 AATA AATA AA--TA AATA AATA AATA AATA AATA AATA A-ATA -AATA
*
48056106 AATA AGTA AATA A
1 AATA AATA AATA A
48056119 GCCATTAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
4 38 0.78
5 6 0.12
6 5 0.10
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.30
Consensus pattern (4 bp):
AATA
Found at i:48056152 original size:17 final size:17
Alignment explanation
Indices: 48056130--48056182 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
48056120 CCATTAAATG
48056130 AATAAAATAAAAGGAAT
1 AATAAAATAAAAGGAAT
* *
48056147 AATAAAAAAAATATGTAAAT
1 AATAAAATAAA-A-G-GAAT
*
48056167 AAAAAAATAAAAGGAA
1 AATAAAATAAAAGGAA
48056183 ACAATTTACA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
17 12 0.43
18 2 0.07
19 2 0.07
20 12 0.43
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (17 bp):
AATAAAATAAAAGGAAT
Found at i:48057760 original size:44 final size:44
Alignment explanation
Indices: 48057707--48058136 Score: 357
Period size: 44 Copynumber: 9.6 Consensus size: 44
48057697 CTCCACTGGC
* * *
48057707 ACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGCTCCACTACA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTACA
* * * * * *
48057751 ACTTCAGGGATATGAGACTCGTA-TTTTCAATCTGCTCCACTACA
1 ACTTCAGGGAGATAAGATTTGTAGCTTT-AATCTGCTCTACTACA
* * * * * *
48057795 ACTTTA--GAGAGAAGATTTGTAACTTCAATAC-GCTTTACTGCA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAAT-CTGCTCTACTACA
* * * * * *
48057837 GCTTCAGAGAGATAATATTTGCTATCTTCAATCTGCTCCACTACA
1 ACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCTACTACA
* * **
48057882 ACTTCAGGG-GATAAGATTTGTGGCTTTAATCTGCTCTATTGTA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTACA
* * * *
48057925 ACTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCA
1 ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTACA
* * * *
48057969 ACTTCAGAGAGATAAGATTTACTATCTTTAATCTGCTCTAATACA
1 ACTTCAGGGAGATAAGATTT-GTAGCTTTAATCTGCTCTACTACA
** *
48058014 ACTTCAGGGAGATAAGATTTGTAGCTTGTATTTTTAGTCTATTCCACTACA
1 ACTTCAGGGAGATAAGATTTGTAGCTT-TA-----A-TCTGCTCTACTACA
* * * *
48058065 ACTTCAGAGAGATAAGATTTACTATCTTTAATCTGCTCTAATACA
1 ACTTCAGGGAGATAAGATTT-GTAGCTTTAATCTGCTCTACTACA
48058110 ACTTCAGGGAGATAAGATTTGTAGCTT
1 ACTTCAGGGAGATAAGATTTGTAGCTT
48058137 GTATTTTTAG
Statistics
Matches: 306, Mismatches: 63, Indels: 34
0.76 0.16 0.08
Matches are distributed among these distances:
42 25 0.08
43 30 0.10
44 120 0.39
45 93 0.30
46 1 0.00
50 1 0.00
51 31 0.10
52 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (44 bp):
ACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCTACTACA
Found at i:48057873 original size:87 final size:86
Alignment explanation
Indices: 48057707--48058132 Score: 278
Period size: 96 Copynumber: 4.8 Consensus size: 86
48057697 CTCCACTGGC
* * * * * * * * * * *
48057707 ACTTCAGGGAGATTAGACTTGTAGCTTTAATCTGCTCCACTACAACTTCAGGGATATGAGACTCG
1 ACTTCAGAGAGA--AGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG
**
48057772 TATTTTCAATCTGCTCCACTACA
64 TAACTTCAATCTGCTCCACTACA
* * * *
48057795 ACTTTAGAGAGAAGATTTGTAACTTCAATAC-GCTTTACTGCAGCTTCAGAGAGATAATATTTGC
1 ACTTCAGAGAGAAGATTTGTAACTTCAAT-CTGCTCTACTGCAACTTCAGAGAGATAAGATTTG-
*
48057859 TATCTTCAATCTGCTCCACTACA
64 TAACTTCAATCTGCTCCACTACA
* * ** * * * * *
48057882 ACTTCAGGGGATAAGATTTGTGGCTTTAATCTGCTCTATTGTAACTTTAGGGAGATAAGATTTGT
1 ACTTCA-GAGAGAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGT
* *
48057947 AACTTCAATCTGCTCTACTGCA
65 AACTTCAATCTGCTCCACTACA
* * * * * *
48057969 ACTTCAGAGAGATAAGATTTACTATCTTTAATCTGCTCTAATACAACTTCAGGGAGATAAGATTT
1 ACTTCAGAGAG--AAGATTT-GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTT
* * **
48058034 GTAGCTTGTATTTTTAGTCTATTCCACTACA
63 GTAACTT-CA-----A-TCTGCTCCACTACA
* * * * * *
48058065 ACTTCAGAGAGATAAGATTTACTATCTTTAATCTGCTCTAATACAACTTCAGGGAGATAAGATTT
1 ACTTCAGAGAG--AAGATTT-GTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTT
48058130 GTA
63 GTA
48058133 GCTTGTATTT
Statistics
Matches: 277, Mismatches: 47, Indels: 20
0.81 0.14 0.06
Matches are distributed among these distances:
86 39 0.14
87 55 0.20
88 60 0.22
89 43 0.16
90 1 0.00
95 1 0.00
96 78 0.28
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (86 bp):
ACTTCAGAGAGAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTA
ACTTCAATCTGCTCCACTACA
Found at i:48058095 original size:96 final size:96
Alignment explanation
Indices: 48057967--48058177 Score: 413
Period size: 96 Copynumber: 2.2 Consensus size: 96
48057957 TGCTCTACTG
48057967 CAACTTCAGAGAGATAAGATTTACTATCTTTAATCTGCTCTAATACAACTTCAGGGAGATAAGAT
1 CAACTTCAGAGAGATAAGATTTACTATCTTTAATCTGCTCTAATACAACTTCAGGGAGATAAGAT
48058032 TTGTAGCTTGTATTTTTAGTCTATTCCACTA
66 TTGTAGCTTGTATTTTTAGTCTATTCCACTA
48058063 CAACTTCAGAGAGATAAGATTTACTATCTTTAATCTGCTCTAATACAACTTCAGGGAGATAAGAT
1 CAACTTCAGAGAGATAAGATTTACTATCTTTAATCTGCTCTAATACAACTTCAGGGAGATAAGAT
48058128 TTGTAGCTTGTATTTTTAGTCTATTCCACTA
66 TTGTAGCTTGTATTTTTAGTCTATTCCACTA
*
48058159 CAACTTCAGGGAGATAAGA
1 CAACTTCAGAGAGATAAGA
48058178 CTTAGTATGG
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 114 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (96 bp):
CAACTTCAGAGAGATAAGATTTACTATCTTTAATCTGCTCTAATACAACTTCAGGGAGATAAGAT
TTGTAGCTTGTATTTTTAGTCTATTCCACTA
Found at i:48058274 original size:44 final size:44
Alignment explanation
Indices: 48058226--48058421 Score: 112
Period size: 44 Copynumber: 4.3 Consensus size: 44
48058216 AGAGGTATAG
* * * *
48058226 GACTTGTCACTTCAATCTCCTCCACTGCTACT-TCAGGGAGATAA
1 GACTTGTAACTTCAATCTACTCCACTACAACTCT-AGGGAGATAA
** *
48058270 GACTTGTAACTTTGATCTACTCCATTACAACTCTAGGGAGATAA
1 GACTTGTAACTTCAATCTACTCCACTACAACTCTAGGGAGATAA
* ** * * *
48058314 GATTTGTAACTTGTAGCTTGAATCTGTTTCACTGCAACT-TCAGGGAAATAA
1 GACTTGTAAC-T-T--C---AATCTACTCCACTACAACTCT-AGGGAGATAA
* *
48058365 GA-TTGGCTATA-TTCAATCTACTCCACTGCAACTTTAGGGAGATAA
1 GACTT-G-TA-ACTTCAATCTACTCCACTACAACTCTAGGGAGATAA
*
48058410 GATTTGTAACTT
1 GACTTGTAACTT
48058422 GTAGCTTTAA
Statistics
Matches: 117, Mismatches: 20, Indels: 30
0.70 0.12 0.18
Matches are distributed among these distances:
43 1 0.01
44 48 0.41
45 30 0.26
46 4 0.03
48 1 0.01
50 4 0.03
51 26 0.22
52 2 0.02
53 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
GACTTGTAACTTCAATCTACTCCACTACAACTCTAGGGAGATAA
Found at i:48058359 original size:51 final size:51
Alignment explanation
Indices: 48058297--48058454 Score: 184
Period size: 51 Copynumber: 3.2 Consensus size: 51
48058287 TACTCCATTA
* * *
48058297 CAACTCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATCTGTTTCACTG
1 CAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCCACTG
* * * * **
48058348 CAACTTCAGGGAAATAAGA-TTG--GC-TATA--TTCAATCTACTCCACTG
1 CAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCCACTG
*
48058393 CAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
1 CAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCCACTG
48058444 CAACTTTAGGG
1 CAACTTTAGGG
48058455 TAGAGGATTT
Statistics
Matches: 85, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
45 30 0.35
46 3 0.04
47 3 0.04
48 2 0.02
49 3 0.04
50 3 0.04
51 41 0.48
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.34
Consensus pattern (51 bp):
CAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTCAATCTGTTCCACTG
Found at i:48064252 original size:19 final size:21
Alignment explanation
Indices: 48064230--48064274 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
48064220 TTATGAATTT
48064230 TAATGCAT-ATG-ATGAAATG
1 TAATGCATGATGAATGAAATG
*
48064249 TAATAC-TGATGAATGAAATG
1 TAATGCATGATGAATGAAATG
48064269 -AATGCA
1 TAATGCA
48064275 GAAAACGCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.05
19 12 0.57
20 8 0.38
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (21 bp):
TAATGCATGATGAATGAAATG
Found at i:48066607 original size:29 final size:29
Alignment explanation
Indices: 48066575--48066635 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
48066565 TTTTAAATAT
*
48066575 TAAAAAAAATGAAATAAAAAATAAAGGAA
1 TAAAAAAAATAAAATAAAAAATAAAGGAA
** * *
48066604 TAAAGGAATTAAAATAAAAAATAAATGAA
1 TAAAAAAAATAAAATAAAAAATAAAGGAA
48066633 TAA
1 TAA
48066636 TATATAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (29 bp):
TAAAAAAAATAAAATAAAAAATAAAGGAA
Found at i:48066687 original size:38 final size:36
Alignment explanation
Indices: 48066615--48066691 Score: 91
Period size: 38 Copynumber: 2.1 Consensus size: 36
48066605 AAAGGAATTA
* * *
48066615 AAATAAAAAATAAATGAATAATATATAATAAATAAGT
1 AAATAAAAAATAAATGAATAAAATAAAAGAAATAA-T
* *
48066652 AAATAAGAAATTAAATGAATAAAATAAAAGGAATAAT
1 AAATAA-AAAATAAATGAATAAAATAAAAGAAATAAT
48066689 AAA
1 AAA
48066692 CAAATATGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
37 10 0.29
38 24 0.71
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (36 bp):
AAATAAAAAATAAATGAATAAAATAAAAGAAATAAT
Done.