Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 160 of 189
Found at i:48068301 original size:44 final size:44
Alignment explanation
Indices: 48068219--48068954 Score: 434
Period size: 44 Copynumber: 16.2 Consensus size: 44
48068209 CACTGCATAG
* ** * *
48068219 GATTTGTTGCTTCAATCTAATCCACTGCAACTTCAGGGAGATTA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * * *
48068263 GACTTGTAGCTTTAATCTACTCCACTACAAGTTTAGGGAGATGA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * *
48068307 GACTCGTATCTACAATCTGCTCCACTGTAACTTTAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * **
48068351 GATTTGTAACTTCAATCTGCTCTACTGCAGCTTTAAAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * *
48068395 TATTTTCTATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAA
1 GA-TTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * * * *
48068440 GATTTGTGGCTTTAATATGCTCTAATGCAACTTCAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * *
48068484 GATTTGCTATCTTTAATCTGCTCCACTGCAACTTTAGGGAGAAAA
1 GATTTG-TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * * *
48068529 GATTTGTGGCTTTAATCTGTTCCATTGTAACTTTAGGGCGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * *
48068573 AATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * * * *
48068617 GATTTGCTATCTTCAATTTGCTCAAAATACAACTTCAAGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTC-CACTGCAACTTTAGGGAGATAA
* * ** *
48068663 GATTTGTAGCTTGTATTTTTAGTTTATTCCACTGCAACTTCAGGGAGATAA
1 GATTTGTAGCTT-CA-----A-TCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * * *
48068714 GACTTACTATGGTAGATTTAATCCG-ACCACTGCAACTTCAGAGG-TATAA
1 GA--T--T-T-GTAGCTTCAATCTGCTCCACTGCAACTTTAG-GGAGATAA
* * * * *
48068763 GACTTGTCA-CTTTAATCTACTCCACTGCTACTTCAGGGAGATAA
1 GATTTGT-AGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * ** * * *
48068807 GACTTGTAACTTTGATCTGCTCTACTACAACTCTAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * * *
48068851 GATTTGTAACTTGTAGCTTGAATCTGTTTCATTGCAACTTCAGGGAAATAA
1 GA----T---TTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* ** *
48068902 GATTGGCTATATTCAATCTACTCCACTGCAACTTTAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
48068947 GATTTGTA
1 GATTTGTA
48068955 ACTTGTAGCT
Statistics
Matches: 532, Mismatches: 130, Indels: 60
0.74 0.18 0.08
Matches are distributed among these distances:
43 12 0.02
44 275 0.52
45 126 0.24
46 24 0.05
47 1 0.00
49 21 0.04
50 3 0.01
51 54 0.10
52 5 0.01
53 1 0.00
55 1 0.00
56 3 0.01
57 6 0.01
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (44 bp):
GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
Found at i:48068428 original size:89 final size:88
Alignment explanation
Indices: 48068228--48068639 Score: 369
Period size: 89 Copynumber: 4.6 Consensus size: 88
48068218 GGATTTGTTG
** * * * * * * * *
48068228 CTTCAATCTAATCCACTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTACTCCACTACAA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTAATGCAA
* * * *
48068293 GTTTAGGGAGATGAGA--CTCGTAT
66 CTTTAGAGAGAT-AAATTTTC-TAT
* * * * *
48068316 CTACAATCTGCTCCACTGTAACTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAG
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTAATGCAA
*
48068381 CTTTAAAGAGATAATATTTTCTAT
66 CTTTAGAGAGATAA-ATTTTCTAT
* * * *
48068405 CTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATTTGTGGCTTTAATATGCTCTAATGCAA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTAATGCAA
* *
48068470 CTTCAGAGAGATAAGATTTGCTAT
66 CTTTAGAGAGATAA-ATTTTCTAT
* * * * * * * *
48068494 CTTTAATCTGCTCCACTGCAACTTTAGGGAGAAAAGATTTGTGGCTTTAATCTGTTCCATTGTAA
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTAATGCAA
* * * * *
48068559 CTTTAGGGCGATAAAATTTGTAA
66 CTTTAGAGAGATAAATTTTCTAT
* * * * *
48068582 CTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATTTGCTC
1 CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG-TAGCTTCAATCTGCTC
48068640 AAAATACAAC
Statistics
Matches: 264, Mismatches: 56, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
87 1 0.00
88 103 0.39
89 158 0.60
90 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (88 bp):
CTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAGCTTCAATCTGCTCTAATGCAA
CTTTAGAGAGATAAATTTTCTAT
Found at i:48068461 original size:133 final size:133
Alignment explanation
Indices: 48068228--48068639 Score: 403
Period size: 133 Copynumber: 3.1 Consensus size: 133
48068218 GGATTTGTTG
** * ** ** * * * *
48068228 CTTCAATCTAATCCACTGCAACTTCAGGGAGATTAGACTTGTAGCTTTAATCTACTCCACTACAA
1 CTTCAATCTGCTCCACTGCAACTTTAAAGAGAAAAGATTTCTAGCTTCAATCTGCTCCACTACAA
* * * * * * * * * *
48068293 GTTTAGGGAGATGAGACTCGTATCTACAATCTGCTCCACTGTAACTTTAGGGAGATAAGATTTG-
66 CTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGC
*
48068357 TAA
131 TAT
* * * * *
48068360 CTTCAATCTGCTCTACTGCAGCTTTAAAGAGATAATATTTTCTATCTTCAATCTGCTCCACTACA
1 CTTCAATCTGCTCCACTGCAACTTTAAAGAGAAAAGA-TTTCTAGCTTCAATCTGCTCCACTACA
** * * *
48068425 ACTTTAGGGAGATAAGATTTGTGGCTTTAATATGCTCTAATGCAACTTCAGAGAGATAAGATTTG
65 ACTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTG
48068490 CTAT
130 CTAT
* ** * * * * * **
48068494 CTTTAATCTGCTCCACTGCAACTTTAGGGAGAAAAGATTTGTGGCTTTAATCTGTTCCATTGTAA
1 CTTCAATCTGCTCCACTGCAACTTTAAAGAGAAAAGATTTCTAGCTTCAATCTGCTCCACTACAA
* *
48068559 CTTTAGGGCGATAAAATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGC
66 CTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGC
48068624 TAT
131 TAT
*
48068627 CTTCAATTTGCTC
1 CTTCAATCTGCTC
48068640 AAAATACAAC
Statistics
Matches: 225, Mismatches: 53, Indels: 3
0.80 0.19 0.01
Matches are distributed among these distances:
132 28 0.12
133 165 0.73
134 32 0.14
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (133 bp):
CTTCAATCTGCTCCACTGCAACTTTAAAGAGAAAAGATTTCTAGCTTCAATCTGCTCCACTACAA
CTTTAGGGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGC
TAT
Found at i:48068876 original size:51 final size:50
Alignment explanation
Indices: 48068808--48069001 Score: 143
Period size: 51 Copynumber: 3.9 Consensus size: 50
48068798 GGGAGATAAG
* *
48068808 ACTTGTAACTTTG-ATCTGCTCTACTACAACTCTAGGGAGATAAGATTTGTA
1 ACTTGTAGC-TTGAATCTGCTCTACTGCAACT-TAGGGAGATAAGATTTGTA
* * *
48068859 ACTTGTAGCTTGAATCTG-TTTCATTGCAACTTCAGGGAAATAAGA-TTG--
1 ACTTGTAGCTTGAATCTGCTCT-ACTGCAACTT-AGGGAGATAAGATTTGTA
* * * * *
48068907 GC-TATA--TTCAATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGTA
1 ACTTGTAGCTTGAATCTGCTCTACTGCAAC-TTAGGGAGATAAGATTTGTA
* * * * *
48068955 ACTTGTAGCTTTAGTCTGTTCTACTGCAACTTCAGGGAAACAAGATT
1 ACTTGTAGCTTGAATCTGCTCTACTGCAACTT-AGGGAGATAAGATT
48069002 CGCTATTTTC
Statistics
Matches: 109, Mismatches: 22, Indels: 24
0.70 0.14 0.15
Matches are distributed among these distances:
45 25 0.23
46 6 0.06
47 3 0.03
48 2 0.02
49 3 0.03
50 11 0.10
51 59 0.54
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (50 bp):
ACTTGTAGCTTGAATCTGCTCTACTGCAACTTAGGGAGATAAGATTTGTA
Found at i:48068957 original size:96 final size:96
Alignment explanation
Indices: 48068834--48069007 Score: 278
Period size: 96 Copynumber: 1.8 Consensus size: 96
48068824 TGCTCTACTA
*
48068834 CAACTCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATCTGTT-TCATTGCAACTTCAGGGAA
1 CAACTCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATCTGTTCT-ACTGCAACTTCAGGGAA
* *
48068898 ATAAGATTGGCTATATTCAATCTACTCCACTG
65 ACAAGATTCGCTATATTCAATCTACTCCACTG
* * *
48068930 CAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAGTCTGTTCTACTGCAACTTCAGGGAAA
1 CAACTCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATCTGTTCTACTGCAACTTCAGGGAAA
48068995 CAAGATTCGCTAT
66 CAAGATTCGCTAT
48069008 TTTCTACAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
96 70 0.99
97 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (96 bp):
CAACTCTAGGGAGATAAGATTTGTAACTTGTAGCTTGAATCTGTTCTACTGCAACTTCAGGGAAA
CAAGATTCGCTATATTCAATCTACTCCACTG
Found at i:48075065 original size:44 final size:44
Alignment explanation
Indices: 48074994--48075448 Score: 424
Period size: 44 Copynumber: 10.3 Consensus size: 44
48074984 CAACTCGTAG
* * * * * *
48074994 GATTTGTTGCTTCAATATACTTCACTGCAACTTAAGGGAGATTA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* *
48075038 GACTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATGA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * ** * *
48075082 GACTCGTATTTTCAATCTACTCCACTGCAACTTCAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * * *
48075126 TATTTGTAACTTCAATCGGCTCTACTACAACTTTAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * *
48075170 TATTTGCTATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * * *
48075215 GATTTGTGGCTTTAATATGCTCTACTGCAGCTTTAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* ** * * * *
48075259 GATTTGCTATCTTCAATCTATTTCATTGCAACTTCAGGGAGAAAA
1 GATTTG-TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * * *
48075304 GATTTGTGGCTTTAATCTGTTCTATTGTAACTTTAGGGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * *
48075348 GATTTGTAACTTCAATCTGCTCTACTGCAACTTTAGAGAGATAA
1 GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
* * * * *
48075392 GATTTGCTATCTTCAATTTGCTCTACTACAACTTCAGGGAGATAA
1 GATTTG-TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
*
48075437 GATTTATAGCTT
1 GATTTGTAGCTT
48075449 GTAGTTTTAG
Statistics
Matches: 335, Mismatches: 73, Indels: 6
0.81 0.18 0.01
Matches are distributed among these distances:
44 227 0.68
45 108 0.32
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (44 bp):
GATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAA
Found at i:48075211 original size:89 final size:88
Alignment explanation
Indices: 48074994--48075441 Score: 475
Period size: 89 Copynumber: 5.1 Consensus size: 88
48074984 CAACTCGTAG
* * * * *
48074994 GATTTGT-TGCTTCAATATACTTCACTGCAACTTAAGGGAGATTAGACTTGTAGCTTCAATCTGC
1 GATTTGTAT-CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* *
48075058 TCCACTGCAACTTTAGGGAGATGA
65 TCTACTGCAACTTTAGGGAGATAA
* * * * * *
48075082 GACTCGTATTTTCAATCTACTCCACTGCAACTTCAGGGAGATAATATTTGTAACTTCAATCGGCT
1 GATTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
* *
48075147 CTACTACAACTTTAGAGAGATAA
66 CTACTGCAACTTTAGGGAGATAA
* * * * * * *
48075170 TATTTGCTATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATTTGTGGCTTTAATATGC
1 GATTTG-TATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* *
48075235 TCTACTGCAGCTTTAGAGAGATAA
65 TCTACTGCAACTTTAGGGAGATAA
* * * * * * *
48075259 GATTTGCTATCTTCAATCTATTTCATTGCAACTTCAGGGAGAAAAGATTTGTGGCTTTAATCTGT
1 GATTTG-TATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* *
48075324 TCTATTGTAACTTTAGGGAGATAA
65 TCTACTGCAACTTTAGGGAGATAA
* * * * * * *
48075348 GATTTGTAACTTCAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATTTGC
1 GATTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGC
* *
48075413 TCTACTACAACTTCAGGGAGATAA
65 TCTACTGCAACTTTAGGGAGATAA
48075437 GATTT
1 GATTT
48075442 ATAGCTTGTA
Statistics
Matches: 295, Mismatches: 62, Indels: 5
0.81 0.17 0.01
Matches are distributed among these distances:
88 109 0.37
89 186 0.63
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (88 bp):
GATTTGTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCT
CTACTGCAACTTTAGGGAGATAA
Found at i:48075242 original size:133 final size:131
Alignment explanation
Indices: 48075021--48075448 Score: 462
Period size: 133 Copynumber: 3.2 Consensus size: 131
48075011 TACTTCACTG
* * * * *
48075021 CAACTTAAGGGAGATTAGACTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATGAGACT
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATT
* * * * * * * *
48075086 CGTATTTTCAATCTACTCCACTGCAACTTCAGGGAGATAATATTTG-TAACTTCAATCGGCTCTA
66 TGTACTTT-AATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATC-GCTCTA
48075150 CTA
129 CTA
* * * * *
48075153 CAACTTTAGAGAGATAATATTTGCTATCTTCAATCTGCTCCACTACAACTTTAGGGAGATAAGAT
1 CAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAT
* * * ** *
48075218 TTGTGGCTTTAATATGCTCTACTGCAGCTTTAGAGAGATAAGATTTGCTATCTTCAATCTATTTC
65 TTGT-ACTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCGCTCT-
* *
48075283 ATTG
128 ACTA
* * * * * * *
48075287 CAACTTCAGGGAGAAAAGATTTGTGGCTTTAATCTGTTCTATTGTAACTTTAGGGAGATAAGATT
1 CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATT
* *
48075352 TGTAACTTCAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATTTGCTCTA
66 TGT-ACTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAA-TCGCTCTA
48075417 CTA
129 CTA
*
48075420 CAACTTCAGGGAGATAAGATTTATAGCTT
1 CAACTTCAGGGAGATAAGATTTGTAGCTT
48075449 GTAGTTTTAG
Statistics
Matches: 240, Mismatches: 51, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
132 18 0.08
133 185 0.77
134 37 0.15
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (131 bp):
CAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGATT
TGTACTTTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTCAATCGCTCTACT
A
Found at i:48075593 original size:15 final size:15
Alignment explanation
Indices: 48075573--48075604 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
48075563 CATTTCACTC
*
48075573 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
48075588 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
48075603 TT
1 TT
48075605 TACATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:48076713 original size:19 final size:20
Alignment explanation
Indices: 48076677--48076714 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
48076667 TGATTTTTTA
* *
48076677 AAAAATTAATTTTGATCAAG
1 AAAAATTAATATTAATCAAG
48076697 AAAAATTAA-ATTAATCAA
1 AAAAATTAATATTAATCAA
48076715 ATTAATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
AAAAATTAATATTAATCAAG
Found at i:48084740 original size:76 final size:75
Alignment explanation
Indices: 48084568--48084786 Score: 233
Period size: 76 Copynumber: 2.9 Consensus size: 75
48084558 ACTTGGATGG
* *** *
48084568 CAATCCCGAGGCTTAATTTATTTTTTAAAACAGATTCGACTTTTGATAAAATGAAAAATAAAAGG
1 CAATCTCGAGGCTTAACCCATTTTTTAAAACAGATTCGACTTTTGATACAATGAAAAATAAAAGG
48084633 ACCTCGACAA
66 ACCTCGACAA
* * ** * * * *
48084643 CAACCTCAAGGCTCGACCCATTTTTGAAAATC-GATTCGACTTTTAATACAATGAAACATTGAAA
1 CAATCTCGAGGCTTAACCCATTTTTTAAAA-CAGATTCGACTTTTGATACAATGAAA-AATAAAA
*
48084707 GGACCTCGACGA
64 GGACCTCGACAA
* * * * * *
48084719 TAATCTCGAGGCTTAACCCATTTTTTAAAACGGATTTGACTTTTGATACAAAGAAAACTAAAAAG
1 CAATCTCGAGGCTTAACCCATTTTTTAAAACAGATTCGACTTTTGATACAATGAAAAATAAAAGG
48084784 ACC
66 ACC
48084787 CCAACGATAA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
75 53 0.46
76 62 0.54
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (75 bp):
CAATCTCGAGGCTTAACCCATTTTTTAAAACAGATTCGACTTTTGATACAATGAAAAATAAAAGG
ACCTCGACAA
Found at i:48086007 original size:28 final size:28
Alignment explanation
Indices: 48085975--48086032 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
48085965 TTTATTTATG
48085975 TTGTTTTGATTATTTACTTTCTAAAACA
1 TTGTTTTGATTATTTACTTTCTAAAACA
48086003 TTGTTTTGATTATTTACTTTCTAAAACA
1 TTGTTTTGATTATTTACTTTCTAAAACA
48086031 TT
1 TT
48086033 CTCAAAACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.55
Consensus pattern (28 bp):
TTGTTTTGATTATTTACTTTCTAAAACA
Found at i:48089727 original size:15 final size:16
Alignment explanation
Indices: 48089707--48089742 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
48089697 TTAAAAGATG
*
48089707 TTTTTAAATAA-CTAT
1 TTTTTAAAAAAGCTAT
48089722 TTTTTAAAAAAGCTAT
1 TTTTTAAAAAAGCTAT
48089738 TTTTT
1 TTTTT
48089743 TTAAAAACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (16 bp):
TTTTTAAAAAAGCTAT
Found at i:48089737 original size:16 final size:15
Alignment explanation
Indices: 48089707--48089758 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
48089697 TTAAAAGATG
*
48089707 TTTTTAAATAACTAT
1 TTTTTAAAAAACTAT
48089722 TTTTTAAAAAAGCTATT
1 TTTTTAAAAAA-CTA-T
*
48089739 TTTTTTAAAAACTACT
1 TTTTTAAAAAACTA-T
48089755 TTTT
1 TTTT
48089759 GTTTATGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 10 0.31
16 11 0.34
17 11 0.34
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (15 bp):
TTTTTAAAAAACTAT
Found at i:48089757 original size:15 final size:14
Alignment explanation
Indices: 48089707--48089758 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 14
48089697 TTAAAAGATG
48089707 TTTTTAAATAACTAT
1 TTTTTAAA-AACTAT
48089722 TTTTTAAAAAAGCTATTT
1 TTTTT-AAAAA-CTA--T
48089740 TTTTTAAAAACTACT
1 TTTTTAAAAACTA-T
48089755 TTTT
1 TTTT
48089759 GTTTATGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
15 12 0.38
16 9 0.28
17 5 0.16
18 6 0.19
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.54
Consensus pattern (14 bp):
TTTTTAAAAACTAT
Found at i:48092376 original size:19 final size:21
Alignment explanation
Indices: 48092352--48092397 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
48092342 ATCTTGAAAC
48092352 ATTTTAAAATTT-TAAAA-TA
1 ATTTTAAAATTTATAAAATTA
48092371 ATTTT--AATTTATAAAATTA
1 ATTTTAAAATTTATAAAATTA
48092390 ATTTTAAA
1 ATTTTAAA
48092398 TAATATATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 5 0.22
18 5 0.22
19 12 0.52
21 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTTTAAAATTTATAAAATTA
Found at i:48096534 original size:11 final size:10
Alignment explanation
Indices: 48096476--48096532 Score: 64
Period size: 10 Copynumber: 5.8 Consensus size: 10
48096466 GTTTTTAAAT
*
48096476 TAATTTCTAA
1 TAATTTTTAA
48096486 TAATTTTT-A
1 TAATTTTTAA
*
48096495 TAA-ATTTAA
1 TAATTTTTAA
*
48096504 TTAAATTTTAA
1 -TAATTTTTAA
48096515 TAATTTTTAA
1 TAATTTTTAA
48096525 TAATTTTT
1 TAATTTTT
48096533 TATGTTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 3 0.08
9 5 0.12
10 27 0.68
11 5 0.12
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:48110113 original size:27 final size:26
Alignment explanation
Indices: 48110083--48110150 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 26
48110073 GGATAGGTAT
48110083 ATAATATAATATGAAA-AATATATGTAC
1 ATAATATAATATGAAAGAATATA--TAC
* *
48110110 ATAAGATAATGT-AAAGAATATATAC
1 ATAATATAATATGAAAGAATATATAC
48110135 ATAACTAATAATATGA
1 ATAA-T-ATAATATGA
48110151 GAAGTACGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
25 7 0.21
26 3 0.09
27 22 0.67
28 1 0.03
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (26 bp):
ATAATATAATATGAAAGAATATATAC
Found at i:48110522 original size:3 final size:3
Alignment explanation
Indices: 48110508--48110558 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
48110498 AAACATAAAC
* *
48110508 TAA TACA TAA TAA TAT TAA TAA TAA TAA -AA TTAA TAA T-A TAA AAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
48110553 TAA TAA
1 TAA TAA
48110559 GAGTATTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 4 0.10
3 31 0.77
4 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:48110540 original size:15 final size:15
Alignment explanation
Indices: 48110508--48110558 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
48110498 AAACATAAAC
*
48110508 TAATACATAATAATAT
1 TAATA-ATAATAAAAT
48110524 TAATAATAATAAAAT
1 TAATAATAATAAAAT
*
48110539 TAATAAT-ATAAAAA
1 TAATAATAATAAAAT
48110553 TAATAA
1 TAATAA
48110559 GAGTATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.36
15 16 0.48
16 5 0.15
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATAATAATAAAAT
Found at i:48111036 original size:6 final size:6
Alignment explanation
Indices: 48111027--48111052 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
48111017 GAAAAAGAAA
48111027 GGAGAG GGAGAG GGAGAG GGAGAG GG
1 GGAGAG GGAGAG GGAGAG GGAGAG GG
48111053 CGATTTCCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.69, T:0.00
Consensus pattern (6 bp):
GGAGAG
Found at i:48111189 original size:16 final size:16
Alignment explanation
Indices: 48111162--48111202 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
48111152 ATTTGATTTC
48111162 TTTTTTT-T-TTTTTA
1 TTTTTTTATATTTTTA
48111176 TTTTTTTATATTTTTA
1 TTTTTTTATATTTTTA
**
48111192 TACTTTTATAT
1 TTTTTTTATAT
48111203 GTATGTATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 7 0.30
15 1 0.04
16 15 0.65
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTTTATATTTTTA
Found at i:48111816 original size:13 final size:13
Alignment explanation
Indices: 48111800--48111825 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48111790 TTTATTTGGT
48111800 TTATTGGGTTTTG
1 TTATTGGGTTTTG
48111813 TTATTGGGTTTTG
1 TTATTGGGTTTTG
48111826 GGGGTGGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TTATTGGGTTTTG
Found at i:48112746 original size:147 final size:148
Alignment explanation
Indices: 48112432--48112843 Score: 502
Period size: 147 Copynumber: 2.8 Consensus size: 148
48112422 ACATGTGAAT
* * * * * *
48112432 CGAGGCTCAACTCACTTTCCGCAATATGAGTTGATTTTTTGACAA-CAGAAATT--GAAATTACC
1 CGAGGCTCAACTCAC-CTCTGTATTATGAGTTGATTTTTTGA-AATAATAAATTAAGAAA-TACC
* * **
48112494 TCGGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACATAAAATT
63 TCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGAAAAACATAAAATT
* *
48112559 AAAAGAAATACCTCGGCATGACT
127 -AAAGAAATACCTCAGCATGACC
48112582 CGAGGCTCAACTCACCTCTGTATTATGAGTTGA-TTTTTGAAA-AATGGAAATTTAAAAGAAATA
1 CGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAATAAT--AAA-TT--AAGAAATA
* * * *
48112645 CCTCAGCATGACCCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTAAAAAACAT-AAAT
61 CCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACATAAAAT
*
48112708 T-AA-AAATACCTCAGCGTGACC
126 TAAAGAAATACCTCAGCATGACC
*
48112729 CGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAATCATAAATTAA-AAATACCTCA
1 CGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAATAATAAATTAAGAAATACCTCA
48112793 GCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA
66 GCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA
48112844 CAGGCTCAAC
Statistics
Matches: 230, Mismatches: 22, Indels: 26
0.83 0.08 0.09
Matches are distributed among these distances:
143 36 0.16
144 22 0.10
146 2 0.01
147 54 0.23
148 18 0.08
149 19 0.08
150 22 0.10
151 13 0.06
152 11 0.05
153 29 0.13
154 4 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (148 bp):
CGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAATAATAAATTAAGAAATACCTCA
GCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACATAAAATTAAAG
AAATACCTCAGCATGACC
Found at i:48112748 original size:71 final size:71
Alignment explanation
Indices: 48112432--48112843 Score: 430
Period size: 76 Copynumber: 5.6 Consensus size: 71
48112422 ACATGTGAAT
* * * * * * * *
48112432 CGAGGCTCAACTCACTTTCCGCAATATGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCG
1 CGAGGCTCAACTCAC-CTCTGCAATATGAGTTGA-TTTTTAAAAACATAAATTAAAAATACCTCA
*
48112497 GCGTGTCC
64 GCGTGACC
** *
48112505 CGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAACATAAAATTAAAAGAAATAC
1 CGAGGCTCAACTCACCTCT-GCAATATGAGTTG-ATTTTTAAAAACAT-AAATT--AA-AAATAC
* * *
48112570 CTCGGCATGACT
60 CTCAGCGTGACC
* * *
48112582 CGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTGAAAA-ATGGAAATTTAAAAGAAATAC
1 CGAGGCTCAACTCACCTCTGCAATATGAGTTGATTTTTAAAAACAT--AAA-TT--AA-AAATAC
*
48112646 CTCAGCATGACC
60 CTCAGCGTGACC
* * *
48112658 CGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTAAAAAACATAAATTAAAAATACCTCAGC
1 CGAGGCTCAACTCACCTCTGCAATATGAGTTGATTTTTAAAAACATAAATTAAAAATACCTCAGC
48112723 GTGACC
66 GTGACC
* * * *
48112729 CGAGGCTCAACTCACCTCTGTATTATGAGTTGATTTTTTGAAATCATAAATTAAAAATACCTCAG
1 CGAGGCTCAACTCACCTCTGCAATATGAGTTGA-TTTTTAAAAACATAAATTAAAAATACCTCAG
48112794 CGTGACC
65 CGTGACC
*
48112801 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA
1 CGAGGCTCAACTCACCTCT-GCAATATGAGTTGATTTTTAAAA
48112844 CAGGCTCAAC
Statistics
Matches: 298, Mismatches: 30, Indels: 23
0.85 0.09 0.07
Matches are distributed among these distances:
71 50 0.17
72 66 0.22
73 48 0.16
74 10 0.03
75 15 0.05
76 76 0.26
77 33 0.11
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (71 bp):
CGAGGCTCAACTCACCTCTGCAATATGAGTTGATTTTTAAAAACATAAATTAAAAATACCTCAGC
GTGACC
Found at i:48112863 original size:42 final size:43
Alignment explanation
Indices: 48112803--48112889 Score: 140
Period size: 42 Copynumber: 2.0 Consensus size: 43
48112793 GCGTGACCCG
*
48112803 AGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTGAAAAC
1 AGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAAC
**
48112845 AGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAAC
1 AGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAAC
48112888 AG
1 AG
48112890 AAATTAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 28 0.68
43 13 0.32
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (43 bp):
AGGCTCAACTCACCTCTCGCAATATAAGTTGAATTTTGAAAAC
Found at i:48112991 original size:74 final size:73
Alignment explanation
Indices: 48112902--48113220 Score: 310
Period size: 74 Copynumber: 4.4 Consensus size: 73
48112892 ATTAAAAGGT
* ** * *
48112902 TCAACCCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGTAGAATTTGAAAATACCTCGGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTG
48112967 CCCCGAGGC
65 CCCCGAGGC
*
48112976 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAAACAGAAATTGAAATTACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG--AAAACAGAAATTGAAAATACCTCAGCGT
* *
48113040 GTCCTGAGGC
64 GCCCCGAGGC
* * * *
48113050 TCAACTCACCTCTAGCAATATGAGTTGA--TTTCGAAAAACAAAAATTGAAATTACCTCAGCGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAATTGAAAATACCTCAGCGTG
* **
48113113 TCTTGAGGC
65 CCCCGAGGC
** * * * * * * * *
48113122 TCAACTCATTTCTTGCAATATGAG-TCA--ATTT-AAAATATAAACTAAAAATACCTCGGCGTGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGC
*
48113183 CTCGAGGC
66 CCCGAGGC
*
48113191 TCAACTCACTTCTCGCAATATGAGTTGATT
1 TCAACTCACCTCTCGCAATATGAGTTGATT
48113221 AAAAATACCT
Statistics
Matches: 211, Mismatches: 29, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
69 52 0.25
70 2 0.01
71 4 0.02
72 64 0.30
73 4 0.02
74 85 0.40
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (73 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGC
CCCGAGGC
Found at i:48113246 original size:56 final size:56
Alignment explanation
Indices: 48113164--48113276 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
48113154 AAATATAAAC
**
48113164 TAAAAATACCTCGGCGTGCCTCGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGAT
1 TAAAAATACCTCAACGTGCCTCGAGGCTCAACTCATC-TCTCGCAATATGAGTTGAT
* *
48113220 TAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 TAAAAATACCTCAACGTGCCTCGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
48113276 T
1 T
48113277 TTCCTCGGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 51 0.98
57 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (56 bp):
TAAAAATACCTCAACGTGCCTCGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
Found at i:48126014 original size:3 final size:3
Alignment explanation
Indices: 48126000--48126050 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
48125990 AAACATAAAC
* *
48126000 TAA TACA TAA TAA TAT TAA TAA TAA TAA -AA TTAA TAA T-A TAA AAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
48126045 TAA TAA
1 TAA TAA
48126051 GATTATTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 4 0.10
3 31 0.77
4 5 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:48126032 original size:15 final size:15
Alignment explanation
Indices: 48126000--48126050 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
48125990 AAACATAAAC
*
48126000 TAATACATAATAATAT
1 TAATA-ATAATAAAAT
48126016 TAATAATAATAAAAT
1 TAATAATAATAAAAT
*
48126031 TAATAAT-ATAAAAA
1 TAATAATAATAAAAT
48126045 TAATAA
1 TAATAA
48126051 GATTATTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.36
15 16 0.48
16 5 0.15
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATAATAATAAAAT
Found at i:48127305 original size:13 final size:13
Alignment explanation
Indices: 48127289--48127314 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48127279 TTTATTTGGT
48127289 TTATTGGGTTTTG
1 TTATTGGGTTTTG
48127302 TTATTGGGTTTTG
1 TTATTGGGTTTTG
48127315 GGGGTGGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TTATTGGGTTTTG
Found at i:48128892 original size:15 final size:15
Alignment explanation
Indices: 48128872--48128979 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
48128862 TTTATGGAAA
*
48128872 ATCAAAGATATGGGT
1 ATCAAATATATGGGT
* **
48128887 ATCAAATA-ATAGAA
1 ATCAAATATATGGGT
*
48128901 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
**
48128917 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
48128931 AGTCAAATATATGGGT
1 A-TCAAATATATGGGT
**
48128947 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
*
48128961 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
48128977 ATC
1 ATC
48128980 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 12 0.17
15 45 0.65
16 12 0.17
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.27
Consensus pattern (15 bp):
ATCAAATATATGGGT
Found at i:48128907 original size:30 final size:30
Alignment explanation
Indices: 48128866--48128989 Score: 194
Period size: 30 Copynumber: 4.1 Consensus size: 30
48128856 ATCATATTTA
* *
48128866 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
48128896 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
48128926 TGGAAAGTCAAATATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
48128956 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
48128987 TGG
1 TGG
48128990 CATAATAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 78 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:48133596 original size:15 final size:15
Alignment explanation
Indices: 48133576--48133683 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
48133566 TTTATGGAAA
*
48133576 ATCAAAGATATGGGT
1 ATCAAATATATGGGT
* **
48133591 ATCAAATA-ATAGAA
1 ATCAAATATATGGGT
*
48133605 AGTCAAAGATATGGGT
1 A-TCAAATATATGGGT
**
48133621 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
48133635 AGTCAAATATATGGGT
1 A-TCAAATATATGGGT
**
48133651 ATCAAATAT-TGGAA
1 ATCAAATATATGGGT
48133665 AGTCAAATATATGGGT
1 A-TCAAATATATGGGT
48133681 ATC
1 ATC
48133684 GAGATATTGG
Statistics
Matches: 70, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
14 12 0.17
15 46 0.66
16 12 0.17
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.28
Consensus pattern (15 bp):
ATCAAATATATGGGT
Found at i:48133613 original size:30 final size:30
Alignment explanation
Indices: 48133570--48133693 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
48133560 TCTATATTTA
* *
48133570 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
48133600 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
48133630 TGGAAAGTCAAATATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
* *
48133660 TGGAAAGTCAAATATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
48133691 TGG
1 TGG
48133694 CATAATAAAA
Statistics
Matches: 87, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 79 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:48137942 original size:6 final size:6
Alignment explanation
Indices: 48137931--48137962 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
48137921 TTTCCAAAAG
*
48137931 TGGAAA TGGAAA TGAAAA TGGAAA TGGAAA TG
1 TGGAAA TGGAAA TGGAAA TGGAAA TGGAAA TG
48137963 ACCAATTGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (6 bp):
TGGAAA
Found at i:48137954 original size:18 final size:19
Alignment explanation
Indices: 48137926--48137963 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
48137916 GTAGGTTTCC
48137926 AAAAGTGGAAATGGAAATG
1 AAAAGTGGAAATGGAAATG
48137945 AAAA-TGGAAATGGAAATG
1 AAAAGTGGAAATGGAAATG
48137963 A
1 A
48137964 CCAATTGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.29, T:0.16
Consensus pattern (19 bp):
AAAAGTGGAAATGGAAATG
Found at i:48138176 original size:26 final size:26
Alignment explanation
Indices: 48138106--48138181 Score: 82
Period size: 26 Copynumber: 2.9 Consensus size: 26
48138096 ACATATTTTC
* *
48138106 TCAAAATTTTATCT-TGGGAAAAATCA
1 TCAAAATTTTA-CTACGGGTAAAATCA
*
48138132 TCAAAATTTTACTACGGGTAAAATCG
1 TCAAAATTTTACTACGGGTAAAATCA
** *
48138158 TCAAAATTTTGTTAGGGGTAAAAT
1 TCAAAATTTTACTACGGGTAAAAT
48138182 AGGGATGAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 2 0.05
26 41 0.95
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACTACGGGTAAAATCA
Found at i:48149224 original size:37 final size:37
Alignment explanation
Indices: 48149183--48149258 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
48149173 AAATTATCAA
* *
48149183 AATGTCTTTATTTTAACAAATCAATAAATATTAATTT
1 AATGTATTTATTTTAAAAAATCAATAAATATTAATTT
48149220 AATGTATTTATTTTAAAAAATCAATAAATATTAATTT
1 AATGTATTTATTTTAAAAAATCAATAAATATTAATTT
48149257 AA
1 AA
48149259 GGGTATTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (37 bp):
AATGTATTTATTTTAAAAAATCAATAAATATTAATTT
Found at i:48149228 original size:33 final size:35
Alignment explanation
Indices: 48149190--48149267 Score: 104
Period size: 37 Copynumber: 2.2 Consensus size: 35
48149180 CAAAATGTCT
* **
48149190 TTATTTTAACAAATCAATAAATATTAATTTAATGTAT
1 TTATTTTAAAAAATCAATAAATATTAATTTAA-G-GG
48149227 TTATTTTAAAAAATCAATAAATATTAATTTAAGGG
1 TTATTTTAAAAAATCAATAAATATTAATTTAAGGG
48149262 -TATTTT
1 TTATTTT
48149268 TTGTTTTCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 6 0.16
36 1 0.03
37 31 0.82
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (35 bp):
TTATTTTAAAAAATCAATAAATATTAATTTAAGGG
Found at i:48161794 original size:24 final size:25
Alignment explanation
Indices: 48161765--48161813 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
48161755 TGCTCTCTTG
48161765 CTTCTTCCGT-TT-TTTTCCTTTTTT
1 CTTCTTCCGTATTCTTTT-CTTTTTT
*
48161789 CTTCTTCGGTATTCTTTTCTTTTTT
1 CTTCTTCCGTATTCTTTTCTTTTTT
48161814 GTTTTGATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 9 0.41
25 9 0.41
26 4 0.18
ACGTcount: A:0.02, C:0.22, G:0.06, T:0.69
Consensus pattern (25 bp):
CTTCTTCCGTATTCTTTTCTTTTTT
Found at i:48162027 original size:10 final size:11
Alignment explanation
Indices: 48161994--48162034 Score: 50
Period size: 10 Copynumber: 3.8 Consensus size: 11
48161984 AAGCTCTCTG
48161994 TTTTCTTTTTAT
1 TTTTC-TTTTAT
*
48162006 GTTTCTTTTAT
1 TTTTCTTTTAT
48162017 TTTTC-TTTAT
1 TTTTCTTTTAT
48162027 TTTT-TTTT
1 TTTTCTTTT
48162035 CGTTTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 12 0.46
11 10 0.38
12 4 0.15
ACGTcount: A:0.07, C:0.07, G:0.02, T:0.83
Consensus pattern (11 bp):
TTTTCTTTTAT
Found at i:48165897 original size:41 final size:41
Alignment explanation
Indices: 48165835--48166002 Score: 151
Period size: 41 Copynumber: 4.1 Consensus size: 41
48165825 TTGAGTCCAA
* * * *
48165835 CAGGCTTCATGCCGGTGTATATTATTAGGCTTTGTGCCTAG
1 CAGGTTTCATGCTGGTTTATATTATCAGGCTTTGTGCCTAG
* * * *
48165876 TAGGTTTCATGTTGGTTTATATCATCAGGCTTTGTGCCTGG
1 CAGGTTTCATGCTGGTTTATATTATCAGGCTTTGTGCCTAG
* * * * *
48165917 CAGGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAA
1 CAGGTTTCATGCTGGTTTATATTATCAGGCTTTGTGCCTAG
* * * *
48165958 CAGGCTTTGA-GCTGGTTTAT-TGTATTAGGCTTTGAGCCTAA
1 CAGG-TTTCATGCTGGTTTATAT-TATCAGGCTTTGTGCCTAG
48165999 CAGG
1 CAGG
48166003 CTTCTTGCCA
Statistics
Matches: 101, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
40 1 0.01
41 97 0.96
42 3 0.03
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (41 bp):
CAGGTTTCATGCTGGTTTATATTATCAGGCTTTGTGCCTAG
Found at i:48165974 original size:82 final size:82
Alignment explanation
Indices: 48165817--48166026 Score: 230
Period size: 82 Copynumber: 2.6 Consensus size: 82
48165807 GAGATAGTGT
* * * **
48165817 ATCAGGCCTTGAGTCC-AACAGGCTTCATGCCGGTGTATATTATTAGGCTTTGTGCCTAGTAGGT
1 ATCAGGCTTTGAG-CCTAACAGGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAACAGGT
*
48165881 TTCATGTTGGTTTATAT-C
65 TTCATGCTGGTTTAT-TGC
* **
48165899 ATCAGGCTTTGTGCCTGGCAGGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAACAGGCT
1 ATCAGGCTTTGAGCCTAACAGGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAACAGG-T
* *
48165964 TTGA-GCTGGTTTATTGT
65 TTCATGCTGGTTTATTGC
* * *
48165981 ATTAGGCTTTGAGCCTAACAGGCTTCTTGCCAGTGTAT-TGTATCAG
1 ATCAGGCTTTGAGCCTAACAGGCTTCATGCCGGTGTATAT-TATCAG
48166027 GTAACTTGTA
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
81 4 0.04
82 99 0.93
83 4 0.04
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.37
Consensus pattern (82 bp):
ATCAGGCTTTGAGCCTAACAGGCTTCATGCCGGTGTATATTATCAGCCTTTGTGCCTAACAGGTT
TCATGCTGGTTTATTGC
Found at i:48166020 original size:41 final size:41
Alignment explanation
Indices: 48165814--48166027 Score: 150
Period size: 41 Copynumber: 5.2 Consensus size: 41
48165804 TTGGAGATAG
* * *
48165814 TGTATCAGGCCTTGAGTCC-AACAGGCTTCATGCCGGTGTAT
1 TGTATCAGGCTTTGTG-CCTAACAGGCTTCTTGCCGGTGTAT
* ** * * ** *
48165855 AT-TATTAGGCTTTGTGCCTAGTAGGTTTCATGTTGGTTTAT
1 -TGTATCAGGCTTTGTGCCTAACAGGCTTCTTGCCGGTGTAT
* ** *
48165896 AT-CATCAGGCTTTGTGCCTGGCAGGCTTCATGCCGGTGTAT
1 -TGTATCAGGCTTTGTGCCTAACAGGCTTCTTGCCGGTGTAT
* * * *
48165937 AT-TATCAGCCTTTGTGCCTAACAGGCTT-TGAGCTGGTTTAT
1 -TGTATCAGGCTTTGTGCCTAACAGGCTTCT-TGCCGGTGTAT
* * *
48165978 TGTATTAGGCTTTGAGCCTAACAGGCTTCTTGCCAGTGTAT
1 TGTATCAGGCTTTGTGCCTAACAGGCTTCTTGCCGGTGTAT
48166019 TGTATCAGG
1 TGTATCAGG
48166028 TAACTTGTAC
Statistics
Matches: 135, Mismatches: 33, Indels: 9
0.76 0.19 0.05
Matches are distributed among these distances:
40 3 0.02
41 130 0.96
42 2 0.01
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.37
Consensus pattern (41 bp):
TGTATCAGGCTTTGTGCCTAACAGGCTTCTTGCCGGTGTAT
Found at i:48171020 original size:6 final size:6
Alignment explanation
Indices: 48171009--48171053 Score: 63
Period size: 6 Copynumber: 7.2 Consensus size: 6
48170999 TATTGTTGAT
*
48171009 AATGGG AATGGG AATGGG AAATGAGA AATGGG AATGGG AATGGG A
1 AATGGG AATGGG AATGGG -AATG-GG AATGGG AATGGG AATGGG A
48171054 GGAGGGAACG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 26 0.74
7 8 0.23
8 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.44, T:0.16
Consensus pattern (6 bp):
AATGGG
Found at i:48171235 original size:29 final size:29
Alignment explanation
Indices: 48171189--48171627 Score: 590
Period size: 30 Copynumber: 15.1 Consensus size: 29
48171179 TGTATTTAAA
* *
48171189 ATTTTAAAAATTAAAAAATATATGTAATGG
1 ATTTTAAAAA-TAAAAAATATATGTAGTGT
48171219 ATTTTAAAAATAAAAAA-ATACTTGTAGTGT
1 ATTTTAAAAATAAAAAATATA--TGTAGTGT
*
48171249 ATTTT-AAAAT---ATATATATGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGT
48171274 ATTTTAAAAATAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGT
* *
48171303 ATTCTAGAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGT
* * * * *
48171333 ATTTT-AAAAT-ATATATATATGAATTAT
1 ATTTTAAAAATAAAAAATATATGTAGTGT
48171360 ATTTTAAAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGT
48171390 ATTTTAAAAATAAAAAAAATATATGTAGTGT
1 ATTTTAAAAAT--AAAAAATATATGTAGTGT
48171421 ATTTTAAAAATAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGT
*
48171450 ATTTTAAAAATAAAAAATATGTGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGT
*
48171479 ATTTTAAAAAT-AAATATATATGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGT
*
48171507 ATTTTAAAAATAAAAAAATATGTGTAGTGT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGT
48171537 ATTTTAAAAAT-AAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGT
48171565 ATTTTAAAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGT
* *
48171595 ATTGTAAAAATAAAAAAATATATGTAGTAT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGT
48171625 ATT
1 ATT
48171628 CGGCGTATTC
Statistics
Matches: 367, Mismatches: 26, Indels: 32
0.86 0.06 0.08
Matches are distributed among these distances:
25 13 0.04
26 7 0.02
27 20 0.05
28 61 0.17
29 96 0.26
30 140 0.38
31 30 0.08
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (29 bp):
ATTTTAAAAATAAAAAATATATGTAGTGT
Found at i:48171489 original size:147 final size:143
Alignment explanation
Indices: 48171219--48171627 Score: 628
Period size: 147 Copynumber: 2.8 Consensus size: 143
48171209 TATGTAATGG
*
48171219 ATTTTAAAAATAAAAAAATACTTGTAGTGTATTTT-AAAAT--ATATATATGTAGTGTATTTTAA
1 ATTTTAAAAATAAAAAAATA-TTGTAGTGTATTTTAAAAATAAAAATATATGTAGTGTATTTTAA
* *
48171281 AAATAAAAAATATATGTAGTGTATTCTAGAAATAAAAAAATATATGTAGTGTATTTTAAAATATA
65 AAATAAAAAATATATGTAGTGTATTCTAAAAATAAAAAAATATATGTAGTGTATTTTAAAATAAA
*
48171346 TATATATGAATTAT
130 TATATATGAAGTAT
48171360 ATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAAATATATGTAGTGTATTT
1 ATTTTAAAAATAAAAAAATAT-TGTAGTGTATTTTAAAAAT---AAAAATATATGTAGTGTATTT
* *
48171425 TAAAAATAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATGTGTAGTGTATTTTAAAAA
62 TAAAAATAAAAAATATATGTAGTGTATTCTAAAAATAAAAAAATATATGTAGTGTATTTT-AAAA
* *
48171489 TAAATATATATGTAGTGT
126 TAAATATATATGAAGTAT
48171507 ATTTTAAAAATAAAAAAATATGTGTAGTGTATTTTAAAAATAAAAATATATGTAGTGTATTTTAA
1 ATTTTAAAAATAAAAAAATAT-TGTAGTGTATTTTAAAAATAAAAATATATGTAGTGTATTTTAA
* *
48171572 AAATAAAAAAATATATGTAGTGTATTGTAAAAATAAAAAAATATATGTAGTATATT
65 AAAT-AAAAAATATATGTAGTGTATTCTAAAAATAAAAAAATATATGTAGTGTATT
48171628 CGGCGTATTC
Statistics
Matches: 246, Mismatches: 12, Indels: 15
0.90 0.04 0.05
Matches are distributed among these distances:
140 1 0.00
141 33 0.13
142 5 0.02
144 28 0.11
145 28 0.11
146 41 0.17
147 110 0.45
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (143 bp):
ATTTTAAAAATAAAAAAATATTGTAGTGTATTTTAAAAATAAAAATATATGTAGTGTATTTTAAA
AATAAAAAATATATGTAGTGTATTCTAAAAATAAAAAAATATATGTAGTGTATTTTAAAATAAAT
ATATATGAAGTAT
Found at i:48171523 original size:58 final size:59
Alignment explanation
Indices: 48171189--48171627 Score: 605
Period size: 58 Copynumber: 7.5 Consensus size: 59
48171179 TGTATTTAAA
* *
48171189 ATTTTAAAAATTAAAAAATATATGTAATGGATTTTAAAAATAAAAAAATACT-TGTAGTGT
1 ATTTTAAAAA-TAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATA-TATGTAGTGT
*
48171249 ATTTT-AAAAT---ATATATATGTAGTGTATTTTAAAAAT-AAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGT
* * * * * * *
48171303 ATTCTAGAAATAAAAAAATATATGTAGTGTATTTT-AAAAT--ATATATATATGAATTAT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGT
48171360 ATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAAATATATGTAGTGT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAAATATATGTAGTGT
*
48171421 ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAATATGTGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGT
* *
48171479 ATTTTAAAAAT-AAATATATATGTAGTGTATTTTAAAAATAAAAAAATATGTGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGT
48171537 ATTTTAAAAAT-AAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGT
* *
48171595 ATTGTAAAAATAAAAAAATATATGTAGTATATT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGTATT
48171628 CGGCGTATTC
Statistics
Matches: 342, Mismatches: 24, Indels: 26
0.87 0.06 0.07
Matches are distributed among these distances:
53 1 0.00
54 20 0.06
55 27 0.08
57 72 0.21
58 123 0.36
59 23 0.07
60 53 0.15
61 23 0.07
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.38
Consensus pattern (59 bp):
ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGT
Found at i:48172061 original size:21 final size:21
Alignment explanation
Indices: 48172037--48172089 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
48172027 CATTGTTTCT
*
48172037 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
48172058 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
48172079 AATCTCACCGC
1 AATCTCACCGC
48172090 CACCGCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:48176107 original size:41 final size:42
Alignment explanation
Indices: 48176029--48176123 Score: 106
Period size: 41 Copynumber: 2.3 Consensus size: 42
48176019 TAATCTTGTT
* *
48176029 TATTTAAATTT-TTTTTTCAAATCTGATAGTTTAAATATAAA
1 TATTTATATTTATTTCTTCAAATCTGATAGTTTAAATATAAA
* * * *
48176070 TATTTTTATATTATTTCTTCAGATCTTATA-TTT-AATATAAT
1 TATTTATAT-TTATTTCTTCAAATCTGATAGTTTAAATATAAA
48176111 TATTTATATTTAT
1 TATTTATATTTAT
48176124 ATTTGTTTTG
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
40 4 0.09
41 22 0.49
42 5 0.11
43 14 0.31
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (42 bp):
TATTTATATTTATTTCTTCAAATCTGATAGTTTAAATATAAA
Found at i:48177295 original size:20 final size:20
Alignment explanation
Indices: 48177255--48177314 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
48177245 AATTTTGAAA
48177255 GCATACCAAAAAATCA-AAGG
1 GCATACCAAAAAAT-ATAAGG
*
48177275 GCATACCAAAAAATATGAGG
1 GCATACCAAAAAATATAAGG
* **
48177295 GAATATAAAAAAATATAAGG
1 GCATACCAAAAAATATAAGG
48177315 AAGTACCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.57, C:0.12, G:0.17, T:0.15
Consensus pattern (20 bp):
GCATACCAAAAAATATAAGG
Found at i:48177325 original size:20 final size:20
Alignment explanation
Indices: 48177277--48177325 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
48177267 ATCAAAGGGC
*
48177277 ATACCAAAAAATATGAGGGA
1 ATACCAAAAAATATGAAGGA
**
48177297 ATATAAAAAAATAT-AAGGA
1 ATACCAAAAAATATGAAGGA
48177316 AGTACCAAAA
1 A-TACCAAAA
48177326 CTTATGAGAG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.61, C:0.08, G:0.14, T:0.16
Consensus pattern (20 bp):
ATACCAAAAAATATGAAGGA
Found at i:48177426 original size:20 final size:21
Alignment explanation
Indices: 48177401--48177441 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
48177391 AATATGAAGG
48177401 AAAGAGAATACC-AAAACTAC
1 AAAGAGAATACCAAAAACTAC
*
48177421 AAAGAGAGTACCAAAAACTAC
1 AAAGAGAATACCAAAAACTAC
48177442 GAGGAAGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.59, C:0.20, G:0.12, T:0.10
Consensus pattern (21 bp):
AAAGAGAATACCAAAAACTAC
Found at i:48177703 original size:20 final size:21
Alignment explanation
Indices: 48177678--48177730 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
48177668 TACGAGGGAG
48177678 GAAGTATCAAAAATTTTA-AA
1 GAAGTATCAAAAATTTTATAA
* *
48177698 GAAGTAT-TAAAA-TTTATGA
1 GAAGTATCAAAAATTTTATAA
48177717 GAA-TATCAAAAATT
1 GAAGTATCAAAAATT
48177731 ACGAAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 7 0.26
19 12 0.44
20 8 0.30
ACGTcount: A:0.53, C:0.04, G:0.11, T:0.32
Consensus pattern (21 bp):
GAAGTATCAAAAATTTTATAA
Found at i:48178560 original size:21 final size:22
Alignment explanation
Indices: 48178531--48178571 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
48178521 TATATAAATT
*
48178531 TTTTTATTATGA-TTAATATAA
1 TTTTAATTATGATTTAATATAA
48178552 TTTTAATTATGATTTAATAT
1 TTTTAATTATGATTTAATAT
48178572 CAAATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (22 bp):
TTTTAATTATGATTTAATATAA
Found at i:48183153 original size:31 final size:31
Alignment explanation
Indices: 48183115--48183189 Score: 116
Period size: 31 Copynumber: 2.4 Consensus size: 31
48183105 ATGGTTCAAA
*
48183115 GTTTCAATTTTTCTTTTTTCTTTTTCT-AAAG
1 GTTTCAATCTTTCTTTTTT-TTTTTCTAAAAG
*
48183146 GTTTCAATCTTTCTTTTTTTTTTTTTAAAAG
1 GTTTCAATCTTTCTTTTTTTTTTTCTAAAAG
48183177 GTTTCAATCTTTC
1 GTTTCAATCTTTC
48183190 ATAGATTTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
30 6 0.15
31 35 0.85
ACGTcount: A:0.17, C:0.13, G:0.07, T:0.63
Consensus pattern (31 bp):
GTTTCAATCTTTCTTTTTTTTTTTCTAAAAG
Found at i:48189208 original size:24 final size:24
Alignment explanation
Indices: 48189181--48189230 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
48189171 TTAAATAAAC
*
48189181 TTAAATGAAAAGTCAATAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
*
48189205 TTAAATGAAAGGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
48189229 TT
1 TT
48189231 TTTTAATGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.34
Consensus pattern (24 bp):
TTAAATGAAAAGTCAAGAGTTATG
Found at i:48189410 original size:17 final size:17
Alignment explanation
Indices: 48189388--48189420 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
48189378 GATATAGAAT
48189388 GTGAACAATTTTACATA
1 GTGAACAATTTTACATA
48189405 GTGAACAATTTTACAT
1 GTGAACAATTTTACAT
48189421 TTAGATGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
GTGAACAATTTTACATA
Found at i:48195844 original size:22 final size:22
Alignment explanation
Indices: 48195807--48195849 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
48195797 GTTATCAATG
*
48195807 GCAGTTTATCTACAAACCAGTA
1 GCAGTTTACCTACAAACCAGTA
* *
48195829 GCAGTTTACCTGCAAATCAGT
1 GCAGTTTACCTACAAACCAGT
48195850 GGTGGCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (22 bp):
GCAGTTTACCTACAAACCAGTA
Found at i:48205272 original size:189 final size:189
Alignment explanation
Indices: 48204943--48205286 Score: 564
Period size: 189 Copynumber: 1.8 Consensus size: 189
48204933 ATCCAATATC
* * *
48204943 GATACTTTTCATATGGTATTGATAAAAGTCCATTTGTTTTGATATCTTTAGCTCCAACGATCTCT
1 GATACTTTTCATATGGTATCGATAAAAGTCCATTTGTTTCGATATCTTTAGCTCCAACGATCACT
* * *
48205008 GAAGTTTGCATTAAGTGCTAATAGTATTGATACTCGTAGACAAAGTATCAATACCTTTTGTTGCA
66 GAACTTTGCATTAAATGCTAATAGTATTGATACTCATAGACAAAGTATCAATACCTTTTGTTGCA
* *
48205073 GGTGAATTTAATGATATGGTATTTTTACATTTTGTTTTCAACCAATTTAGCTAAGTATT
131 AGTAAATTTAATGATATGGTATTTTTACATTTTGTTTTCAACCAATTTAGCTAAGTATT
* *
48205132 GATACTTTTCCTA-GGTATCGATAAAAGTCCATTTGTATTCGATATCTTTAGCTCCAACGGTCAC
1 GATACTTTTCATATGGTATCGATAAAAGTCCATTTGT-TTCGATATCTTTAGCTCCAACGATCAC
*
48205196 TGAACTTTGCATTAAATGCTAATAGTATTGATACTCATAGACAAAGTATCGATACCTTTTGTTGC
65 TGAACTTTGCATTAAATGCTAATAGTATTGATACTCATAGACAAAGTATCAATACCTTTTGTTGC
*
48205261 AAGTAAATTTAATGATCTGGTATTTT
130 AAGTAAATTTAATGATATGGTATTTT
48205287 CATCTCCAAC
Statistics
Matches: 142, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
188 22 0.15
189 120 0.85
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.40
Consensus pattern (189 bp):
GATACTTTTCATATGGTATCGATAAAAGTCCATTTGTTTCGATATCTTTAGCTCCAACGATCACT
GAACTTTGCATTAAATGCTAATAGTATTGATACTCATAGACAAAGTATCAATACCTTTTGTTGCA
AGTAAATTTAATGATATGGTATTTTTACATTTTGTTTTCAACCAATTTAGCTAAGTATT
Found at i:48206528 original size:97 final size:97
Alignment explanation
Indices: 48206409--48206609 Score: 323
Period size: 97 Copynumber: 2.1 Consensus size: 97
48206399 TTGCTCAACT
* ** *
48206409 AGTGGTTCATCCACAACGTATTAGCAGCTTTTATTTACACAGACGGATGGTTTATCCACAAATAT
1 AGTGGTTCATCCACAACATATTAGCAGCTTTTATTTACACAGACAAATAGTTTATCCACAAATAT
*
48206474 ATTCTTATCATTAGCAA-TCATCTGTAATGATC
66 ATT-TTATCATTAGCAATTCATCTGCAATGATC
*
48206506 AGTGGTTCATCCACAACATATTAGCAGCTTTTATTTGCACAGACAAATAGTTTATCCACAAATAT
1 AGTGGTTCATCCACAACATATTAGCAGCTTTTATTTACACAGACAAATAGTTTATCCACAAATAT
48206571 ATTTTATCATTAGCAATTCATCTGCAATGATC
66 ATTTTATCATTAGCAATTCATCTGCAATGATC
*
48206603 AATGGTT
1 AGTGGTT
48206610 TATTCATAAC
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 13 0.14
97 83 0.86
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (97 bp):
AGTGGTTCATCCACAACATATTAGCAGCTTTTATTTACACAGACAAATAGTTTATCCACAAATAT
ATTTTATCATTAGCAATTCATCTGCAATGATC
Found at i:48207016 original size:22 final size:22
Alignment explanation
Indices: 48206974--48207017 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
48206964 GGCTCAGCTC
*
48206974 AGATCTAATTTTTTAATATTTT
1 AGATCTAATTATTTAATATTTT
* *
48206996 AGATCT-ATTATTTGATAATTT
1 AGATCTAATTATTTAATATTTT
48207017 A
1 A
48207018 TTATTCAGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.55
Consensus pattern (22 bp):
AGATCTAATTATTTAATATTTT
Found at i:48207710 original size:42 final size:42
Alignment explanation
Indices: 48207614--48207714 Score: 121
Period size: 42 Copynumber: 2.4 Consensus size: 42
48207604 TATACTTTGA
* **
48207614 TTTATTTGATGATGCACTTACATGCTAGTATATTTGCTTCGG
1 TTTATCTGATGATGCACTTACATGAAAGTATATTTGCTTCGG
** ** **
48207656 TACATCCAATGATGCACTTATGTGAAAGTATATTTGCTTCGG
1 TTTATCTGATGATGCACTTACATGAAAGTATATTTGCTTCGG
48207698 TTTATCTGATGATGCAC
1 TTTATCTGATGATGCAC
48207715 CATGTGTGCC
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (42 bp):
TTTATCTGATGATGCACTTACATGAAAGTATATTTGCTTCGG
Found at i:48207752 original size:43 final size:42
Alignment explanation
Indices: 48207682--48207843 Score: 137
Period size: 43 Copynumber: 3.8 Consensus size: 42
48207672 CTTATGTGAA
* * * *
48207682 AGTATATTTGCTTCGGTTTATCTGATGATGCACCATGTGTGCC
1 AGTATAATTGCTTC-GATTGTCCGATGATGCACCATGTGTGCC
48207725 AGTATAATTGCTTCGATTCGTCCGATGATGCACC-TCGTGTGCC
1 AGTATAATTGCTTCGATT-GTCCGATGATGCACCAT-GTGTGCC
* * * * * *
48207768 AGTATAATTGTTTTGGCTTGCCCGATGATGCACTATGTGTGCT
1 AGTATAATTG-CTTCGATTGTCCGATGATGCACCATGTGTGCC
** * * *
48207811 AGTATCTTTCCTTCGATATATCCAATGATGCAC
1 AGTATAATTGCTTCGAT-TGTCCGATGATGCAC
48207844 TATGATGCTA
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 8 0.08
43 81 0.85
44 6 0.06
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (42 bp):
AGTATAATTGCTTCGATTGTCCGATGATGCACCATGTGTGCC
Found at i:48217659 original size:22 final size:22
Alignment explanation
Indices: 48217631--48217675 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
48217621 CAAACAAGTC
48217631 CGTGTTCCGAGTAATGTATACT
1 CGTGTTCCGAGTAATGTATACT
48217653 CGTGTTCCGAGTAATGTATACT
1 CGTGTTCCGAGTAATGTATACT
48217675 C
1 C
48217676 TAACATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (22 bp):
CGTGTTCCGAGTAATGTATACT
Found at i:48219145 original size:5 final size:5
Alignment explanation
Indices: 48219137--48219162 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
48219127 AGGTTTTCAT
48219137 TTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC TTTTC TTTTC TTTTC TTTTC T
48219163 CTTTTGTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:48229531 original size:10 final size:10
Alignment explanation
Indices: 48229503--48229536 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
48229493 CGCTTTTCAA
*
48229503 AAAAGAAAAG
1 AAAACAAAAG
48229513 AAGAACAAAAG
1 AA-AACAAAAG
48229524 AAAACAAAAG
1 AAAACAAAAG
48229534 AAA
1 AAA
48229537 GAGGAGAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.79, C:0.06, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAACAAAAG
Found at i:48229574 original size:15 final size:15
Alignment explanation
Indices: 48229554--48229584 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
48229544 ACCTCCAAAG
48229554 AAAATAAAAATAATC
1 AAAATAAAAATAATC
48229569 AAAATAAAAATAATC
1 AAAATAAAAATAATC
48229584 A
1 A
48229585 TAACAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAATAAAAATAATC
Found at i:48230756 original size:29 final size:29
Alignment explanation
Indices: 48230723--48230804 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
48230713 CTGTTGACGC
* * * * *
48230723 CACACGGCCGTGTGGTAGGCCGTGTGCGA
1 CACACGACCGCGTGATAGGCCATGTGCAA
48230752 CACACGACCGCGTGATAGGCCATGTGCAA
1 CACACGACCGCGTGATAGGCCATGTGCAA
* **
48230781 CACACGATCTTGTGATAGGCCATG
1 CACACGACCGCGTGATAGGCCATG
48230805 GCCATTTTGG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.22, C:0.28, G:0.32, T:0.18
Consensus pattern (29 bp):
CACACGACCGCGTGATAGGCCATGTGCAA
Found at i:48232772 original size:3 final size:3
Alignment explanation
Indices: 48232757--48232786 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
48232747 AAAATAAAAC
*
48232757 TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
48232787 CATTAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:48232775 original size:15 final size:15
Alignment explanation
Indices: 48232749--48232812 Score: 53
Period size: 15 Copynumber: 4.3 Consensus size: 15
48232739 AATAAAGGAA
*
48232749 AATAA-AACTAATAAC
1 AATAATAAC-AATAAT
*
48232764 AATAATAATAATAAT
1 AATAATAACAATAAT
*
48232779 AATAATAACATTAA-
1 AATAATAACAATAAT
*
48232793 AATAATTAACTA-AAT
1 AATAA-TAACAATAAT
48232808 AATAA
1 AATAA
48232813 AATTGCTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
14 7 0.17
15 31 0.77
16 2 0.05
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (15 bp):
AATAATAACAATAAT
Found at i:48234438 original size:44 final size:44
Alignment explanation
Indices: 48234333--48234438 Score: 167
Period size: 44 Copynumber: 2.4 Consensus size: 44
48234323 TTGACCCACT
* * * *
48234333 CCACTGCAACCTCAGGGAAATCGAACTCATATCTTCAACTGGTC
1 CCACTGCAACTTCAGGGGAATCAAACTCATATCTTCAACTGGCC
*
48234377 CCACTACAACTTCAGGGGAATCAAACTCATATCTTCAACTGGCC
1 CCACTGCAACTTCAGGGGAATCAAACTCATATCTTCAACTGGCC
48234421 CCACTGCAACTTCAGGGG
1 CCACTGCAACTTCAGGGG
48234439 GATAAGATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGGAATCAAACTCATATCTTCAACTGGCC
Found at i:48234725 original size:129 final size:130
Alignment explanation
Indices: 48234504--48234771 Score: 378
Period size: 129 Copynumber: 2.1 Consensus size: 130
48234494 TGATTTATAG
* * * *
48234504 CTTCCATCTATTCCACTACAACTTCAGGGGAATAAGACTTGCTGTCTTCAGTCTACTCTACTGCA
1 CTTCGATCTATCCCACTACAACTTCAGGGGAATAAGACCTGCTGTCTTCAGTCTACTCCACTGCA
* * *
48234569 TCCTCAGTGAGATAGAACTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTACCAT
66 ACCTCAGGGAGAAAGAACTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTACCAT
* * * *
48234634 CTTCGATCTATCCCACTGCAACTTTAGGGGGATAAGACCTGCT-TACTT-AGTCTGCTCCACTGC
1 CTTCGATCTATCCCACTACAACTTCAGGGGAATAAGACCTGCTGT-CTTCAGTCTACTCCACTGC
* * **
48234697 AACCTCAGGGAGAAAGGATTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTTTCA
65 AACCTCAGGGAGAAAGAACTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTACCA
48234762 T
130 T
48234763 CTTCGATCT
1 CTTCGATCT
48234772 GCTCCGCTAC
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
129 82 0.67
130 40 0.33
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (130 bp):
CTTCGATCTATCCCACTACAACTTCAGGGGAATAAGACCTGCTGTCTTCAGTCTACTCCACTGCA
ACCTCAGGGAGAAAGAACTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTACCAT
Found at i:48234822 original size:129 final size:129
Alignment explanation
Indices: 48234563--48234950 Score: 421
Period size: 128 Copynumber: 3.0 Consensus size: 129
48234553 AGTCTACTCT
* * *
48234563 ACTGCATCCTCAGTGAGATAGAACTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
1 ACTGCATCCTCAGGGAGATAGGATTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
* * * * * * ** *
48234628 TACCATCTTCGATCT-ATCC-C-ACTGCAACTTTAGGGGGATAAGACCTGCTTACTT--AGTCTG
66 TACCATCTTCGATCTGCTCCGCTACTGC--C--TAGGGAGACAAGATCTG-TAATTTCCAACCTA
*
48234688 CTCC
126 TTCC
* *
48234692 ACTGCAACCTCAGGGAGAAAGGATTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
1 ACTGCATCCTCAGGGAGATAGGATTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
** *
48234757 TTTCATCTTCGATCTGCTCCGCTACTGCCTAGGGAGACGAGATCTGTAATTTCCAACCTATTCC
66 TACCATCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAACCTATTCC
** * * *
48234821 ACTGC-TGGTCAGGGACATAGGACTT-GTGACTTAAATCTGCTTCTTTACACTTGAAGATAAGAT
1 ACTGCATCCTCAGGGAGATAGGA-TTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGAT
** * * *
48234884 TCGCCGTCTTCGATTTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCC
65 TTACCATCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAACCTATTCC
48234949 AC
1 AC
48234951 GGCTAGTCAG
Statistics
Matches: 221, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
127 4 0.02
128 121 0.55
129 86 0.39
130 4 0.02
131 1 0.00
132 5 0.02
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (129 bp):
ACTGCATCCTCAGGGAGATAGGATTCGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATT
TACCATCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAACCTATTCC
Found at i:48234894 original size:128 final size:128
Alignment explanation
Indices: 48234722--48234977 Score: 422
Period size: 128 Copynumber: 2.0 Consensus size: 128
48234712 GGATTCGTGG
***
48234722 CTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTTTCATCTTCGATCTGCTCCGCTACTGCCT
1 CTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCCT
* * *
48234787 AGGGAGACGAGATCTGTAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACTTGTGA
66 AGGGAGACAAGATCTGTAATTTCCAACCTATTCCACGGCTAGTCAGGGACATAGGACTTGTGA
* * * *
48234850 CTTAAATCTGCTTCTTTACACTTGAAGATAAGATTCGCCGTCTTCGATTTGCTCCGCTACTGCTT
1 CTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCCT
48234915 AGGGAGACAAGATCTGTAATTTCCAACCTATTCCACGGCTAGTCAGGGACATAGGACTTGTGA
66 AGGGAGACAAGATCTGTAATTTCCAACCTATTCCACGGCTAGTCAGGGACATAGGACTTGTGA
48234978 TTTCACTGAT
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
128 118 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (128 bp):
CTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCATCTTCGATCTGCTCCGCTACTGCCT
AGGGAGACAAGATCTGTAATTTCCAACCTATTCCACGGCTAGTCAGGGACATAGGACTTGTGA
Found at i:48236207 original size:14 final size:14
Alignment explanation
Indices: 48236188--48236221 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
48236178 TTAGCCTCTC
*
48236188 CATTTTTACTTTTT
1 CATTTTTACTTTCT
*
48236202 CATTTTTCCTTTCT
1 CATTTTTACTTTCT
48236216 CATTTT
1 CATTTT
48236222 CATTTTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.68
Consensus pattern (14 bp):
CATTTTTACTTTCT
Found at i:48237261 original size:142 final size:144
Alignment explanation
Indices: 48237047--48237333 Score: 488
Period size: 142 Copynumber: 2.0 Consensus size: 144
48237037 CTTTTTCCTT
*
48237047 TTTTCATTTTTTTATTTTGATTTTTTTCATCTAGATTTTTCTCTTTTTTCATTCTTCATTCTTTT
1 TTTTCATTTTTTTACTTTGATTTTTTTCATCTAGATTTTTCTCTTTTTTCATTCTTCATTCTTTT
48237112 TCTCTTATTTTCA-TT-TTGACATTGATTTTGATTTTTCTTTTTTCTTCTTTTCGTTTTTGATTT
66 TCTCTTATTTTCATTTCTTGACATTGATTTTGATTTTTCTTTTTTCTTCTTTTCGTTTTTGATTT
48237175 TGATTTTTTTTCAC
131 TGATTTTTTTTCAC
*
48237189 TTTTCATTTTTTTACTTTGATTTTTTTCATCTAGATTTTTCTCTTTTTTCATTCTTCTTTCTTTT
1 TTTTCATTTTTTTACTTTGATTTTTTTCATCTAGATTTTTCTCTTTTTTCATTCTTCATTCTTTT
* *
48237254 TCTCTTATTTTCATTTTGCCCTTGACCTTGATTTTGATTTTTCTTTTTTCTTCTTTTTGTTTTTG
66 TCTCTTATTTTCA-TTT---CTTGACATTGATTTTGATTTTTCTTTTTTCTTCTTTTCGTTTTTG
48237319 ATTTTGATTTTTTTT
127 ATTTTGATTTTTTTT
48237334 TAATTGGATC
Statistics
Matches: 135, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
142 76 0.56
144 2 0.01
148 57 0.42
ACGTcount: A:0.11, C:0.14, G:0.06, T:0.69
Consensus pattern (144 bp):
TTTTCATTTTTTTACTTTGATTTTTTTCATCTAGATTTTTCTCTTTTTTCATTCTTCATTCTTTT
TCTCTTATTTTCATTTCTTGACATTGATTTTGATTTTTCTTTTTTCTTCTTTTCGTTTTTGATTT
TGATTTTTTTTCAC
Found at i:48239376 original size:20 final size:20
Alignment explanation
Indices: 48239351--48239388 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
48239341 ATTCGCTCTA
48239351 ATTTTTCCAACCTTTGTTCC
1 ATTTTTCCAACCTTTGTTCC
*
48239371 ATTTTTCTAACCTTTGTT
1 ATTTTTCCAACCTTTGTT
48239389 TGGATACCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.55
Consensus pattern (20 bp):
ATTTTTCCAACCTTTGTTCC
Found at i:48241785 original size:15 final size:15
Alignment explanation
Indices: 48241767--48241813 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
48241757 AAAATAAAAC
48241767 TAATAACAATAATAA
1 TAATAACAATAATAA
*
48241782 TAATAACATTAA-AA
1 TAATAACAATAATAA
*
48241796 TAATTAACTA-AATAA
1 TAA-TAACAATAATAA
48241811 TAA
1 TAA
48241814 AATTGCTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 7 0.26
15 20 0.74
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (15 bp):
TAATAACAATAATAA
Found at i:48244422 original size:9 final size:9
Alignment explanation
Indices: 48244393--48244422 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
48244383 ATGTGTAGGA
48244393 TTATTTTTT
1 TTATTTTTT
48244402 TTATCTTTTT
1 TTAT-TTTTT
48244412 TTATTTTTT
1 TTATTTTTT
48244421 TT
1 TT
48244423 GTCTGCAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (9 bp):
TTATTTTTT
Found at i:48261965 original size:18 final size:20
Alignment explanation
Indices: 48261939--48261975 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
48261929 CAGACACTCC
48261939 ATGTGC-TTTCT-TCTTTTT
1 ATGTGCTTTTCTCTCTTTTT
*
48261957 ATGTTCTTTTCTCTCTTTT
1 ATGTGCTTTTCTCTCTTTT
48261976 ATAACGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 5 0.31
20 6 0.38
ACGTcount: A:0.05, C:0.19, G:0.08, T:0.68
Consensus pattern (20 bp):
ATGTGCTTTTCTCTCTTTTT
Found at i:48264873 original size:40 final size:39
Alignment explanation
Indices: 48264752--48264886 Score: 148
Period size: 40 Copynumber: 3.4 Consensus size: 39
48264742 GACTTTGAGT
* *
48264752 CAATGAGACACTGGGTGTCAATTTCCTACTTCGGATTAATT
1 CAATGAGACACTGGGTGTCAATTT-ATACTTCGGATT-ATC
* * * * *
48264793 CGATGAGGCACTGGGTGCCAA--TATACTTCGGTTTAGC
1 CAATGAGACACTGGGTGTCAATTTATACTTCGGATTATC
*
48264830 CAATGAGACACTGGGTGTCAATTTATTACTTCGAATTATC
1 CAATGAGACACTGGGTGTCAATTTA-TACTTCGGATTATC
*
48264870 CAATGAGGCACTGGGTG
1 CAATGAGACACTGGGTG
48264887 CCAAACTGCT
Statistics
Matches: 77, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
37 19 0.25
38 10 0.13
39 3 0.04
40 27 0.35
41 18 0.23
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (39 bp):
CAATGAGACACTGGGTGTCAATTTATACTTCGGATTATC
Found at i:48268017 original size:11 final size:11
Alignment explanation
Indices: 48268001--48268031 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
48267991 ATATTTTTCC
*
48268001 TAAATACTAAA
1 TAAATACCAAA
48268012 TAAATACCAAA
1 TAAATACCAAA
48268023 TAAATACCA
1 TAAATACCA
48268032 TATGAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.23
Consensus pattern (11 bp):
TAAATACCAAA
Found at i:48269321 original size:15 final size:15
Alignment explanation
Indices: 48269301--48269332 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
48269291 CATTTCACTA
*
48269301 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
48269316 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
48269331 TT
1 TT
48269333 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:48270937 original size:37 final size:37
Alignment explanation
Indices: 48270883--48270974 Score: 89
Period size: 37 Copynumber: 2.4 Consensus size: 37
48270873 GTTCCAAAAA
* *
48270883 TAATATTATTTTGATAGT-TTAATATTAAATTAA-ATT
1 TAATATTATCTTAATAGTATT-ATATTAAATTAATATT
* *
48270919 TAATACTTATCTTAATAGTATTTTATTAATTTAATATT
1 TAATA-TTATCTTAATAGTATTATATTAAATTAATATT
*
48270957 AAAGTAGTTATCTTAATA
1 TAA-TA-TTATCTTAATA
48270975 TTAAATTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
36 5 0.11
37 21 0.46
38 7 0.15
39 13 0.28
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.51
Consensus pattern (37 bp):
TAATATTATCTTAATAGTATTATATTAAATTAATATT
Found at i:48276336 original size:3 final size:3
Alignment explanation
Indices: 48276330--48276365 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
48276320 TTCTCTTCTT
*
48276330 CTC CTC CTC CTC CTC TTC CTC CTC CTC CTC CTC CTC
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
48276366 ATCATCATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (3 bp):
CTC
Found at i:48276390 original size:3 final size:3
Alignment explanation
Indices: 48276384--48276441 Score: 82
Period size: 3 Copynumber: 19.7 Consensus size: 3
48276374 CATCATCATT
**
48276384 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC -TC CGC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
48276431 TTC TTT TTC TT
1 TTC TTC TTC TT
48276442 TTATTTCCCA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:48283106 original size:878 final size:878
Alignment explanation
Indices: 48281412--48283171 Score: 3502
Period size: 878 Copynumber: 2.0 Consensus size: 878
48281402 AAAGGCACCA
48281412 CAATTATACCAAAACATCATTTACCAAAACAAGCCAATATTACCATATTCCAAGCATGCAAACCT
1 CAATTATACCAAAACATCATTTACCAAAACAAGCCAATATTACCATATTCCAAGCATGCAAACCT
48281477 AGTTCATTTAACCACTACATGATACCACAAAAGACCATTTCCAACCAGTATATACATACCGAAAG
66 AGTTCATTTAACCACTACATGATACCACAAAAGACCATTTCCAACCAGTATATACATACCGAAAG
48281542 AGCCATATATACAAGCACTTAAAAGAGACCAAAATGACATAACTTGGTAGGGTATTAAAGTTCAT
131 AGCCATATATACAAGCACTTAAAAGAGACCAAAATGACATAACTTGGTAGGGTATTAAAGTTCAT
48281607 CAAACCAAACTTAAACTCCAAAGCATTTGCATACCAAAACATTTATTTCACATCCATGAACTACC
196 CAAACCAAACTTAAACTCCAAAGCATTTGCATACCAAAACATTTATTTCACATCCATGAACTACC
48281672 AATACAAAAGACCTATACATGCAATTATTAACATTGGCCAAAATATTCAAAAACTACCGAAATGG
261 AATACAAAAGACCTATACATGCAATTATTAACATTGGCCAAAATATTCAAAAACTACCGAAATGG
48281737 TTGCTGGATTGTGATAGGTCTCTGATGAGTTTCCAATCGATCGATTTTTTGATAGTCTATAAAAC
326 TTGCTGGATTGTGATAGGTCTCTGATGAGTTTCCAATCGATCGATTTTTTGATAGTCTATAAAAC
48281802 AAAAGAAAGTAACTACGTAAGCAAATAGTGCTTAGTAAGCTCGTACAAACTTAAACATAACTTAC
391 AAAAGAAAGTAACTACGTAAGCAAATAGTGCTTAGTAAGCTCGTACAAACTTAAACATAACTTAC
48281867 CATTTCATTAGCACAATTCATAGTTTAAGCAAAAAATCATTACCAATGCCATAAGCTTAGTATAA
456 CATTTCATTAGCACAATTCATAGTTTAAGCAAAAAATCATTACCAATGCCATAAGCTTAGTATAA
48281932 ACCTATACAACATCATCAACTCACAAGTTAGTGAACTTGTCCATGACACAAATGAATTTAACCAT
521 ACCTATACAACATCATCAACTCACAAGTTAGTGAACTTGTCCATGACACAAATGAATTTAACCAT
48281997 AAGATAAGTAGATTTCCATACATAAACACACCATTTAACTCATCAATGTTTTCATAAGATCATGA
586 AAGATAAGTAGATTTCCATACATAAACACACCATTTAACTCATCAATGTTTTCATAAGATCATGA
48282062 TTCATCTCATTTGCATACGTACCTTTTTATTTCCTTTTCTTACCTGTTGAACCATCTAGAATTAC
651 TTCATCTCATTTGCATACGTACCTTTTTATTTCCTTTTCTTACCTGTTGAACCATCTAGAATTAC
48282127 ATCGGATACTCAGGAATGCTCACAGATAGAGTGTCTTTCCATATAACTGTAACCTTTCCTTTACA
716 ATCGGATACTCAGGAATGCTCACAGATAGAGTGTCTTTCCATATAACTGTAACCTTTCCTTTACA
48282192 TCAATGCTCACATGAGCTGTGGAATGGGTCTGCTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
781 TCAATGCTCACATGAGCTGTGGAATGGGTCTGCTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
48282257 ATGATGCTGATCGTACGAGCTGTGAAGAATTTG
846 ATGATGCTGATCGTACGAGCTGTGAAGAATTTG
48282290 CAATTATACCAAAACATCATTTACCAAAACAAGCCAATATTACCATATTCCAAGCATGCAAACCT
1 CAATTATACCAAAACATCATTTACCAAAACAAGCCAATATTACCATATTCCAAGCATGCAAACCT
48282355 AGTTCATTTAACCACTACATGATACCACAAAAGACCATTTCCAACCAGTATATACATACCGAAAG
66 AGTTCATTTAACCACTACATGATACCACAAAAGACCATTTCCAACCAGTATATACATACCGAAAG
48282420 AGCCATATATACAAGCACTTAAAAGAGACCAAAATGACATAACTTGGTAGGGTATTAAAGTTCAT
131 AGCCATATATACAAGCACTTAAAAGAGACCAAAATGACATAACTTGGTAGGGTATTAAAGTTCAT
48282485 CAAACCAAACTTAAACTCCAAAGCATTTGCATACCAAAACATTTATTTCACATCCATGAACTACC
196 CAAACCAAACTTAAACTCCAAAGCATTTGCATACCAAAACATTTATTTCACATCCATGAACTACC
*
48282550 AATAGAAAAGACCTATACATGCAATTATTAACATTGGCCAAAATATTCAAAAACTACCGAAATGG
261 AATACAAAAGACCTATACATGCAATTATTAACATTGGCCAAAATATTCAAAAACTACCGAAATGG
48282615 TTGCTGGATTGTGATAGGTCTCTGATGAGTTTCCAATCGATCGATTTTTTGATAGTCTATAAAAC
326 TTGCTGGATTGTGATAGGTCTCTGATGAGTTTCCAATCGATCGATTTTTTGATAGTCTATAAAAC
*
48282680 AAAGGAAAGTAACTACGTAAGCAAATAGTGCTTAGTAAGCTCGTACAAACTTAAACATAACTTAC
391 AAAAGAAAGTAACTACGTAAGCAAATAGTGCTTAGTAAGCTCGTACAAACTTAAACATAACTTAC
48282745 CATTTCATTAGCACAATTCATAGTTTAAGCAAAAAATCATTACCAATGCCATAAGCTTAGTATAA
456 CATTTCATTAGCACAATTCATAGTTTAAGCAAAAAATCATTACCAATGCCATAAGCTTAGTATAA
48282810 ACCTATACAACATCATCAACTCACAAGTTAGTGAACTTGTCCATGACACAAATGAATTTAACCAT
521 ACCTATACAACATCATCAACTCACAAGTTAGTGAACTTGTCCATGACACAAATGAATTTAACCAT
48282875 AAGATAAGTAGATTTCCATACATAAACACACCATTTAACTCATCAATGTTTTCATAAGATCATGA
586 AAGATAAGTAGATTTCCATACATAAACACACCATTTAACTCATCAATGTTTTCATAAGATCATGA
48282940 TTCATCTCATTTGCATACGTACCTTTTTATTTCCTTTTCTTACCTGTTGAACCATCTAGAATTAC
651 TTCATCTCATTTGCATACGTACCTTTTTATTTCCTTTTCTTACCTGTTGAACCATCTAGAATTAC
48283005 ATCGGATACTCAGGAATGCTCACAGATAGAGTGTCTTTCCATATAACTGTAACCTTTCCTTTACA
716 ATCGGATACTCAGGAATGCTCACAGATAGAGTGTCTTTCCATATAACTGTAACCTTTCCTTTACA
48283070 TCAATGCTCACATGAGCTGTGGAATGGGTCTGCTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
781 TCAATGCTCACATGAGCTGTGGAATGGGTCTGCTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
48283135 ATGATGCTGATCGTACGAGCTGTGAAGAATTTG
846 ATGATGCTGATCGTACGAGCTGTGAAGAATTTG
48283168 CAAT
1 CAAT
48283172 AAATACAGGA
Statistics
Matches: 880, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
878 880 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (878 bp):
CAATTATACCAAAACATCATTTACCAAAACAAGCCAATATTACCATATTCCAAGCATGCAAACCT
AGTTCATTTAACCACTACATGATACCACAAAAGACCATTTCCAACCAGTATATACATACCGAAAG
AGCCATATATACAAGCACTTAAAAGAGACCAAAATGACATAACTTGGTAGGGTATTAAAGTTCAT
CAAACCAAACTTAAACTCCAAAGCATTTGCATACCAAAACATTTATTTCACATCCATGAACTACC
AATACAAAAGACCTATACATGCAATTATTAACATTGGCCAAAATATTCAAAAACTACCGAAATGG
TTGCTGGATTGTGATAGGTCTCTGATGAGTTTCCAATCGATCGATTTTTTGATAGTCTATAAAAC
AAAAGAAAGTAACTACGTAAGCAAATAGTGCTTAGTAAGCTCGTACAAACTTAAACATAACTTAC
CATTTCATTAGCACAATTCATAGTTTAAGCAAAAAATCATTACCAATGCCATAAGCTTAGTATAA
ACCTATACAACATCATCAACTCACAAGTTAGTGAACTTGTCCATGACACAAATGAATTTAACCAT
AAGATAAGTAGATTTCCATACATAAACACACCATTTAACTCATCAATGTTTTCATAAGATCATGA
TTCATCTCATTTGCATACGTACCTTTTTATTTCCTTTTCTTACCTGTTGAACCATCTAGAATTAC
ATCGGATACTCAGGAATGCTCACAGATAGAGTGTCTTTCCATATAACTGTAACCTTTCCTTTACA
TCAATGCTCACATGAGCTGTGGAATGGGTCTGCTCACACGAGCTGTGGGTCAGAATGTAAGCTAC
ATGATGCTGATCGTACGAGCTGTGAAGAATTTG
Found at i:48291626 original size:23 final size:23
Alignment explanation
Indices: 48291600--48291645 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
48291590 TGGTATTCAC
48291600 CTTTTACAAGAAAAAAATATTAA
1 CTTTTACAAGAAAAAAATATTAA
48291623 CTTTTACAAGAAAAAAATATTAA
1 CTTTTACAAGAAAAAAATATTAA
48291646 ATTAATCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (23 bp):
CTTTTACAAGAAAAAAATATTAA
Found at i:48299026 original size:22 final size:23
Alignment explanation
Indices: 48298983--48299026 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
48298973 AAACACGCAA
*
48298983 AGTAGAAGAAAATAATGCAAAAC
1 AGTAGAAGAAAATAATGAAAAAC
48299006 AGTAGAA-AAAATAGAT-AAAAA
1 AGTAGAAGAAAATA-ATGAAAAA
48299027 TATATTGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.66, C:0.05, G:0.16, T:0.14
Consensus pattern (23 bp):
AGTAGAAGAAAATAATGAAAAAC
Found at i:48300112 original size:62 final size:59
Alignment explanation
Indices: 48300038--48300162 Score: 169
Period size: 62 Copynumber: 2.1 Consensus size: 59
48300028 TATATACATA
* * *
48300038 TTTTTAATTTTCATATATACATACTTTATATCTTACATCATTATATATCTTTATATACGCAT
1 TTTTTAATTTTCATATATACATACCTTACATCTT--AT-ATTATATATCTTTATACACGCAT
* * *
48300100 TTTTTAATTTTCATATATATATACCTTGCATCTTATATTATATATCTTTATACACGTAT
1 TTTTTAATTTTCATATATACATACCTTACATCTTATATTATATATCTTTATACACGCAT
48300159 TTTT
1 TTTT
48300163 AAACTCATGT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 25 0.44
60 2 0.04
62 30 0.53
ACGTcount: A:0.30, C:0.14, G:0.02, T:0.54
Consensus pattern (59 bp):
TTTTTAATTTTCATATATACATACCTTACATCTTATATTATATATCTTTATACACGCAT
Found at i:48301205 original size:106 final size:106
Alignment explanation
Indices: 48301020--48301211 Score: 278
Period size: 106 Copynumber: 1.8 Consensus size: 106
48301010 TAATAAATGC
* * * *
48301020 AATATTTTGCATTTGGAAATTCGAGAAAGCGTGTCCTAATGTGTTGGGTTTCAATTTTTTCGTTC
1 AATATTTTGCATTTAGAAATTCGAGAAAGCGTGCCCTAATGTGCTAGGTTTCAATTTTTTCGTTC
*
48301085 GACCGAATAGCCAAATATCCTTTAAAATTTCAAAGTAAGGT
66 GACCAAATAGCCAAATATCCTTTAAAATTTCAAAGTAAGGT
* * * *
48301126 AATATTTTGCGTTTAGAAATTCGAGGAAA-TGTGCCCTAATGTGCTAGGTTTCGATTTTTTTGTT
1 AATATTTTGCATTTAGAAATTCGA-GAAAGCGTGCCCTAATGTGCTAGGTTTCAATTTTTTCGTT
*
48301190 TGACCAAATAGCCAAATATCCT
65 CGACCAAATAGCCAAATATCCT
48301212 CTTATATCTT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
106 71 0.95
107 4 0.05
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (106 bp):
AATATTTTGCATTTAGAAATTCGAGAAAGCGTGCCCTAATGTGCTAGGTTTCAATTTTTTCGTTC
GACCAAATAGCCAAATATCCTTTAAAATTTCAAAGTAAGGT
Found at i:48310212 original size:20 final size:20
Alignment explanation
Indices: 48310176--48310213 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
48310166 GTACTTGTTA
*
48310176 GAAAATAAAAAAGAAAATTG
1 GAAAATAAAAAAAAAAATTG
48310196 GAAAA-AAATAAAAAAAAT
1 GAAAATAAA-AAAAAAAAT
48310214 ATAATATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.76, C:0.00, G:0.11, T:0.13
Consensus pattern (20 bp):
GAAAATAAAAAAAAAAATTG
Found at i:48311679 original size:17 final size:18
Alignment explanation
Indices: 48311652--48311685 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
48311642 TTATGTTTTC
*
48311652 TTTTTACTCTATAACAAT
1 TTTTTACTCTACAACAAT
48311670 TTTTTA-TCTACAACAA
1 TTTTTACTCTACAACAA
48311686 CAACCATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTTTACTCTACAACAAT
Found at i:48321211 original size:67 final size:71
Alignment explanation
Indices: 48321096--48321231 Score: 226
Period size: 67 Copynumber: 2.0 Consensus size: 71
48321086 AACAAAGCTG
48321096 ACATTATTTCCAATTTAATAAATAAATAAAAATATTTTCACTTTTGTTCCATATGAGGTACTATT
1 ACATTATTTCCAATTT-ATAAATAAATAAAAATATTTTCACTTTTGTTCCATATGAGGTACTATT
48321161 CTTTCTA
65 CTTTCTA
*
48321168 ACATTATTTCCAA-TT-T-AATAAA-AAAAATATTTTCACTTTTGTTCCATATGAGGTACTCTTC
1 ACATTATTTCCAATTTATAAATAAATAAAAATATTTTCACTTTTGTTCCATATGAGGTACTATTC
48321229 TTT
66 TTT
48321232 ATTACAAATT
Statistics
Matches: 63, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
67 41 0.65
68 6 0.10
69 1 0.02
71 2 0.03
72 13 0.21
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.45
Consensus pattern (71 bp):
ACATTATTTCCAATTTATAAATAAATAAAAATATTTTCACTTTTGTTCCATATGAGGTACTATTC
TTTCTA
Found at i:48324204 original size:152 final size:153
Alignment explanation
Indices: 48323918--48324226 Score: 530
Period size: 152 Copynumber: 2.0 Consensus size: 153
48323908 TAAATTCCAC
*
48323918 TTTCAAACTCTGAAATCCAAGTTGAATCCAGGCAATGGGAACTCAGTTAATAAGTTTGAAACTCT
1 TTTCAAACTCTGAAATCCAAGTTGAATCCAGACAATGGGAACTCAGTTAATAAGTTTGAAACTCT
* *
48323983 TCAACCCCCAGCTACATTGCGGGGTGACATTTATATTACCGGGTTTTTTACTGGAATAATTT-AA
66 TCAACACCCAGCTACATTGCGGGGTGACATTTATATTACCGGATTTTTTACTGGAATAATTTAAA
*
48324047 AAAAAATTATATACTGAAATAGG
131 AAAAAATTATATACGGAAATAGG
* *
48324070 TTTCAAACTCTGAAATCCAAGTTGAATCCAGACAATGGGAACTGAGTTAATAGGTTTGAAACTCT
1 TTTCAAACTCTGAAATCCAAGTTGAATCCAGACAATGGGAACTCAGTTAATAAGTTTGAAACTCT
*
48324135 TCAACACCCAGCTACATTGCGGGGTCGACATTTATATTACCGGATTTTTTACTGGAATAATTTTT
66 TCAACACCCAGCTACATTGCGGGGT-GACATTTATATTACCGGATTTTTTACTGGAATAA-TTTA
48324200 AAAAAAAATTATATACGGAAATAGG
129 AAAAAAAATTATATACGGAAATAGG
48324225 TT
1 TT
48324227 GTCAGATAGA
Statistics
Matches: 148, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
152 86 0.58
153 33 0.22
154 3 0.02
155 26 0.18
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (153 bp):
TTTCAAACTCTGAAATCCAAGTTGAATCCAGACAATGGGAACTCAGTTAATAAGTTTGAAACTCT
TCAACACCCAGCTACATTGCGGGGTGACATTTATATTACCGGATTTTTTACTGGAATAATTTAAA
AAAAAATTATATACGGAAATAGG
Found at i:48325144 original size:60 final size:60
Alignment explanation
Indices: 48325080--48325198 Score: 175
Period size: 60 Copynumber: 2.0 Consensus size: 60
48325070 ATACTAAACT
* * ** * *
48325080 AAACATAACAATTCATAATTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAAAAATTCATAACATAATCCTAAATTACGAACAAATTAATTTTAAAATAATTAC
*
48325140 AAACACAAAAATTTATAACATAATCCTAAATTACGAACAAATTAATTTTAAAATAATTA
1 AAACACAAAAATTCATAACATAATCCTAAATTACGAACAAATTAATTTTAAAATAATTA
48325199 TAAAAAGCAA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.54, C:0.12, G:0.01, T:0.34
Consensus pattern (60 bp):
AAACACAAAAATTCATAACATAATCCTAAATTACGAACAAATTAATTTTAAAATAATTAC
Found at i:48325400 original size:11 final size:11
Alignment explanation
Indices: 48325381--48325411 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
48325371 TTTTCTTTGT
*
48325381 TCTTTTTCTTC
1 TCTTCTTCTTC
48325392 TCTTCTTCTTC
1 TCTTCTTCTTC
48325403 TCTTCTTCT
1 TCTTCTTCT
48325412 CCTTTCTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (11 bp):
TCTTCTTCTTC
Found at i:48325606 original size:24 final size:25
Alignment explanation
Indices: 48325561--48325608 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
48325551 TTTATATTTA
*
48325561 AATATTTTTAATAAAAATAAAAAAT
1 AATATTTTTAATAAAAACAAAAAAT
* *
48325586 AATA-TTTTAATCAAACCAAAAAA
1 AATATTTTTAATAAAAACAAAAAA
48325609 AATTAATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (25 bp):
AATATTTTTAATAAAAACAAAAAAT
Found at i:48326224 original size:21 final size:21
Alignment explanation
Indices: 48326199--48326305 Score: 106
Period size: 24 Copynumber: 4.8 Consensus size: 21
48326189 CGGAGGGAAA
*
48326199 GGAGGGTATGGAGGTGGGCAC
1 GGAGGGTATGGTGGTGGGCAC
48326220 GGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGGTATGGTGGT-G-GG-CAC
*
48326244 GGAGGGTATGGTGGTGGCCAC
1 GGAGGGTATGGTGGTGGGCAC
* *
48326265 GGAGGATACGGTGGTGGTGGCCAC
1 GGAGGGTA---TGGTGGTGGGCAC
* *
48326289 GGAGGATACGGTGGTGG
1 GGAGGGTATGGTGGTGG
48326306 TGGCCACGGC
Statistics
Matches: 76, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
21 32 0.42
22 2 0.03
23 3 0.04
24 39 0.51
ACGTcount: A:0.16, C:0.12, G:0.54, T:0.18
Consensus pattern (21 bp):
GGAGGGTATGGTGGTGGGCAC
Found at i:48326249 original size:45 final size:45
Alignment explanation
Indices: 48326199--48326293 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
48326189 CGGAGGGAAA
* * *
48326199 GGAGGGTATGGAGGTGGGCACGGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGGTATGGAGGTGGCCACGGAGGATACGGTGGTGGTGGCCAC
*
48326244 GGAGGGTATGGTGGTGGCCACGGAGGATACGGTGGTGGTGGCCAC
1 GGAGGGTATGGAGGTGGCCACGGAGGATACGGTGGTGGTGGCCAC
48326289 GGAGG
1 GGAGG
48326294 ATACGGTGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.16, C:0.13, G:0.55, T:0.17
Consensus pattern (45 bp):
GGAGGGTATGGAGGTGGCCACGGAGGATACGGTGGTGGTGGCCAC
Found at i:48326302 original size:45 final size:45
Alignment explanation
Indices: 48326211--48326305 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
48326201 AGGGTATGGA
* * * * *
48326211 GGTGGGCACGGAGGGTATGGTGGTGGTGGCCACGGAGGGTATGGT
1 GGTGGCCACGGAGGATACGGTGGTGGTGGCCACGGAGGATACGGT
48326256 GGTGGCCACGGAGGATACGGTGGTGGTGGCCACGGAGGATACGGT
1 GGTGGCCACGGAGGATACGGTGGTGGTGGCCACGGAGGATACGGT
48326301 GGTGG
1 GGTGG
48326306 TGGCCACGGC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.15, C:0.14, G:0.54, T:0.18
Consensus pattern (45 bp):
GGTGGCCACGGAGGATACGGTGGTGGTGGCCACGGAGGATACGGT
Found at i:48326326 original size:24 final size:24
Alignment explanation
Indices: 48326211--48326314 Score: 151
Period size: 24 Copynumber: 4.5 Consensus size: 24
48326201 AGGGTATGGA
* * *
48326211 GGTGGGCACGGAGGGTATGGTGGT
1 GGTGGCCACGGAGGATACGGTGGT
*
48326235 GGTGGCCACGGAGGGTA---TGGT
1 GGTGGCCACGGAGGATACGGTGGT
48326256 GGTGGCCACGGAGGATACGGTGGT
1 GGTGGCCACGGAGGATACGGTGGT
48326280 GGTGGCCACGGAGGATACGGTGGT
1 GGTGGCCACGGAGGATACGGTGGT
48326304 GGTGGCCACGG
1 GGTGGCCACGG
48326315 CGGTCACGGT
Statistics
Matches: 75, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
21 20 0.27
24 55 0.73
ACGTcount: A:0.14, C:0.15, G:0.53, T:0.17
Consensus pattern (24 bp):
GGTGGCCACGGAGGATACGGTGGT
Found at i:48326326 original size:45 final size:43
Alignment explanation
Indices: 48326199--48326314 Score: 115
Period size: 45 Copynumber: 2.5 Consensus size: 43
48326189 CGGAGGGAAA
* * * * *
48326199 GGAGGGTATGGAGGTGGGCACGGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGATATGGTGGTGGCCACGGAGGATA-CG-GGTGGTGGCCAC
*
48326244 GGAGGGTATGGTGGTGGCCACGGAGGATACGGTGGTGGTGGCCAC
1 GGAGGATATGGTGGTGGCCACGGAGGATAC-G-GGTGGTGGCCAC
48326289 GGAGGATACGGTGGTGGTGGCCACGG
1 GGAGGATA---TGGTGGTGGCCACGG
48326315 CGGTCACGGT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
45 47 0.76
48 15 0.24
ACGTcount: A:0.16, C:0.14, G:0.53, T:0.17
Consensus pattern (43 bp):
GGAGGATATGGTGGTGGCCACGGAGGATACGGGTGGTGGCCAC
Found at i:48331257 original size:16 final size:16
Alignment explanation
Indices: 48331236--48331269 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
48331226 CAAAATCTAA
48331236 ATTTAATT-TTTAATTT
1 ATTTAATTATTT-ATTT
48331252 ATTTAATTATTTATTT
1 ATTTAATTATTTATTT
48331268 AT
1 AT
48331270 GATGTTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTAATTATTTATTT
Found at i:48332635 original size:5 final size:5
Alignment explanation
Indices: 48332625--48332657 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
48332615 TTAAATATAT
48332625 TATTA TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TAT
48332658 AAAATAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:48332780 original size:22 final size:22
Alignment explanation
Indices: 48332732--48332780 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
48332722 GGTACACTTG
48332732 TAATAAAAATAAATATATTCTT
1 TAATAAAAATAAATATATTCTT
* * *
48332754 AAATAATAAGTAAA-ATATTTTT
1 TAATAA-AAATAAATATATTCTT
48332776 TAATA
1 TAATA
48332781 TATTACTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (22 bp):
TAATAAAAATAAATATATTCTT
Found at i:48333279 original size:23 final size:24
Alignment explanation
Indices: 48333244--48333288 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
48333234 AATATGGCAA
48333244 GAAATTAAGTAGAAAAG-AAGTAT
1 GAAATTAAGTAGAAAAGTAAGTAT
48333267 GAAA-TAAGCTAGAAAAGTAAGT
1 GAAATTAAG-TAGAAAAGTAAGT
48333289 GAGCTTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 4 0.20
23 12 0.60
24 4 0.20
ACGTcount: A:0.56, C:0.02, G:0.22, T:0.20
Consensus pattern (24 bp):
GAAATTAAGTAGAAAAGTAAGTAT
Found at i:48338731 original size:41 final size:40
Alignment explanation
Indices: 48338666--48338744 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 40
48338656 TAAAAGGTAT
*
48338666 TTAAATATTTAGATTAATTTATATTTTATGTATCATTATA
1 TTAAATATTTAAATTAATTTATATTTTATGTATCATTATA
*
48338706 TTAAATTATTTAAATT-ATTTAATATTTTATTTATCATTA
1 TTAAA-TATTTAAATTAATTT-ATATTTTATGTATCATTA
48338745 ATTTTAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
40 9 0.26
41 26 0.74
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (40 bp):
TTAAATATTTAAATTAATTTATATTTTATGTATCATTATA
Found at i:48338760 original size:23 final size:22
Alignment explanation
Indices: 48338733--48338784 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
48338723 TTTAATATTT
48338733 TATTTATCATTA-ATTTTAAAAA
1 TATTTAT-ATTACATTTTAAAAA
*
48338755 TAATTTATATTACTTTTTTAAAAA
1 T-ATTTATATTAC-ATTTTAAAAA
48338779 TATTTA
1 TATTTA
48338785 AAATTTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.19
23 11 0.42
24 10 0.38
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (22 bp):
TATTTATATTACATTTTAAAAA
Found at i:48348029 original size:51 final size:49
Alignment explanation
Indices: 48347967--48348148 Score: 177
Period size: 50 Copynumber: 3.6 Consensus size: 49
48347957 GATCATAACA
* **
48347967 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGAGA-TGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGAGACCATTCTC---TCGG
* * * * * * *
48348018 TGCCCATGCCATGTCTCAGACATGGTCTTACAGGGGACCCATTGTCTCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGAGA-CCATTCTCTCGG
* * *
48348068 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCCCTTGTCTCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGAGA-CCATTCTCTCGG
* *
48348118 TGCCAACTCCATGTCCCAGACATGGTCTTAC
1 TGCCAACGCCATGTCCCAAACATGGTCTTAC
48348149 GTGGGATCTC
Statistics
Matches: 112, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
50 77 0.69
51 31 0.28
53 4 0.04
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (49 bp):
TGCCAACGCCATGTCCCAAACATGGTCTTACATGAGACCATTCTCTCGG
Found at i:48348091 original size:50 final size:50
Alignment explanation
Indices: 48348014--48348148 Score: 207
Period size: 50 Copynumber: 2.7 Consensus size: 50
48348004 TGTTCTCATA
* * *
48348014 TCGGTGCCCATGCCATGTCTCAGACATGGTCTTACAGGGGACCCATTGTC
1 TCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCCATTGTC
* * *
48348064 TCGGTGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCCCTTGTC
1 TCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCCATTGTC
*
48348114 TCGGTGCCAACTCCATGTCCCAGACATGGTCTTAC
1 TCGGTGCCAACGCCATGTCCCAGACATGGTCTTAC
48348149 GTGGGATCTC
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.19, C:0.33, G:0.23, T:0.25
Consensus pattern (50 bp):
TCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCCATTGTC
Found at i:48349587 original size:9 final size:9
Alignment explanation
Indices: 48349575--48349695 Score: 57
Period size: 9 Copynumber: 13.6 Consensus size: 9
48349565 TGATATATAT
48349575 TTATGTAAA
1 TTATGTAAA
48349584 TTATGTAAA
1 TTATGTAAA
*
48349593 TTATGTAAG
1 TTATGTAAA
*
48349602 TTATG-ATA
1 TTATGTAAA
* ***
48349610 TGATGTTTT
1 TTATGTAAA
* * **
48349619 TTTTATTTA
1 TTATGTAAA
*
48349628 TTATGTAAG
1 TTATGTAAA
*
48349637 TTATGTAAG
1 TTATGTAAA
*
48349646 TTATG-ATA
1 TTATGTAAA
* * *
48349654 TGATATATAT
1 TTATGTA-AA
*
48349664 TTATGTAAG
1 TTATGTAAA
48349673 TTATGTAAA
1 TTATGTAAA
*
48349682 TTATGTAAT
1 TTATGTAAA
48349691 TTATG
1 TTATG
48349696 ATATGATATA
Statistics
Matches: 83, Mismatches: 26, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
8 9 0.11
9 69 0.83
10 5 0.06
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (9 bp):
TTATGTAAA
Found at i:48349596 original size:18 final size:18
Alignment explanation
Indices: 48349575--48349738 Score: 77
Period size: 18 Copynumber: 9.3 Consensus size: 18
48349565 TGATATATAT
*
48349575 TTATGTAAATTATGTAAA
1 TTATGTAAGTTATGTAAA
*
48349593 TTATGTAAGTTATG-ATA
1 TTATGTAAGTTATGTAAA
* *** * * **
48349610 TGATGTTTTTTTTATTTA
1 TTATGTAAGTTATGTAAA
*
48349628 TTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGTAAA
* * * *
48349646 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATGTAAA
48349664 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGTAAA
* *
48349682 TTATGTAATTTATG-ATA
1 TTATGTAAGTTATGTAAA
* * *
48349699 TGATATATATTTATGT--A
1 TTATGTA-AGTTATGTAAA
* *
48349716 TTATGCAAGTTATGTAAG
1 TTATGTAAGTTATGTAAA
48349734 TTATG
1 TTATG
48349739 ATCCAAAGTT
Statistics
Matches: 104, Mismatches: 35, Indels: 14
0.68 0.23 0.09
Matches are distributed among these distances:
16 7 0.07
17 29 0.28
18 61 0.59
19 7 0.07
ACGTcount: A:0.34, C:0.01, G:0.15, T:0.50
Consensus pattern (18 bp):
TTATGTAAGTTATGTAAA
Found at i:48349601 original size:45 final size:44
Alignment explanation
Indices: 48349548--48349740 Score: 273
Period size: 45 Copynumber: 4.4 Consensus size: 44
48349538 ATCCAAAGTT
48349548 TTATGTAAGTTATGATATGATATATATTTATGTAAATTATGTAAA
1 TTATGTAAGTTATGATATGATATATATTTATGT-AATTATGTAAA
* * * * *
48349593 TTATGTAAGTTATGATATGATGTTTTTTTTAT-TTATTATGTAAG
1 TTATGTAAGTTATGATATGAT-ATATATTTATGTAATTATGTAAA
48349637 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAA
1 TTATGTAAGTTATGATATGATATATATTTATGTAA-TTATGTAAA
* * *
48349682 TTATGTAATTTATGATATGATATATATTTATGT-ATTATGCAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAATTATGTAAA
48349725 TTATGTAAGTTATGAT
1 TTATGTAAGTTATGAT
48349741 CCAAAGTTTT
Statistics
Matches: 131, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
43 29 0.22
44 33 0.25
45 62 0.47
46 7 0.05
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.50
Consensus pattern (44 bp):
TTATGTAAGTTATGATATGATATATATTTATGTAATTATGTAAA
Found at i:48349679 original size:89 final size:88
Alignment explanation
Indices: 48349548--48349740 Score: 314
Period size: 89 Copynumber: 2.2 Consensus size: 88
48349538 ATCCAAAGTT
48349548 TTATGTAAGTTATGATATGATATATATTTATGTAAATTATGTAAATTATGTAAGTTATGATATGA
1 TTATGTAAGTTATGATATGATATATATTTATGTAAATTATGTAAATTATGTAAGTTATGATATGA
* * * * *
48349613 TGTTTTTTTTATTTATTATGTAAG
66 T-ATATATTTATGTATTATGCAAG
* *
48349637 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTATGTAATTTATGATATGA
1 TTATGTAAGTTATGATATGATATATATTTATGTAAATTATGTAAATTATGTAAGTTATGATATGA
48349702 TATATATTTATGTATTATGCAAG
66 TATATATTTATGTATTATGCAAG
48349725 TTATGTAAGTTATGAT
1 TTATGTAAGTTATGAT
48349741 CCAAAGTTTT
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
88 33 0.34
89 64 0.66
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.50
Consensus pattern (88 bp):
TTATGTAAGTTATGATATGATATATATTTATGTAAATTATGTAAATTATGTAAGTTATGATATGA
TATATATTTATGTATTATGCAAG
Found at i:48349734 original size:9 final size:9
Alignment explanation
Indices: 48349628--48349738 Score: 77
Period size: 9 Copynumber: 12.6 Consensus size: 9
48349618 TTTTTATTTA
48349628 TTATGTAAG
1 TTATGTAAG
48349637 TTATGTAAG
1 TTATGTAAG
*
48349646 TTATGATATG
1 TTATG-TAAG
* * *
48349656 ATATAT-AT
1 TTATGTAAG
48349664 TTATGTAAG
1 TTATGTAAG
*
48349673 TTATGTAAA
1 TTATGTAAG
*
48349682 TTATGTAAT
1 TTATGTAAG
*
48349691 TTATGATATG
1 TTATG-TAAG
* * *
48349701 ATATAT-AT
1 TTATGTAAG
48349709 TTATGT-A-
1 TTATGTAAG
*
48349716 TTATGCAAG
1 TTATGTAAG
48349725 TTATGTAAG
1 TTATGTAAG
48349734 TTATG
1 TTATG
48349739 ATCCAAAGTT
Statistics
Matches: 77, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
7 5 0.06
8 10 0.13
9 51 0.66
10 11 0.14
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:48350414 original size:13 final size:14
Alignment explanation
Indices: 48350393--48350425 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
48350383 TACAGATAAT
*
48350393 AGAATCAGATATGC
1 AGAATCAGATATAC
48350407 AGAA-CAGATATAC
1 AGAATCAGATATAC
48350420 AGAATC
1 AGAATC
48350426 CTACCCCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (14 bp):
AGAATCAGATATAC
Found at i:48353105 original size:72 final size:72
Alignment explanation
Indices: 48353024--48353241 Score: 235
Period size: 71 Copynumber: 3.1 Consensus size: 72
48353014 AAATGGTTCC
* * * * *
48353024 ACTTAATATCAAAACTCAATAAGTTGAACTAAATTAACCTTTTTTAAAATTCATAATTGAACAAA
1 ACTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAATAAA
*
48353089 CGTTTTT
66 CGATTTT
** ** * * *
48353096 ACTTAATATCAAATTTTAATAAATCAAACTAAATTAAGC-TTTTGAAAATGT-ATAACTAAATAA
1 ACTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTTTTTAAAAAT-TCATAATTAAATAA
* * *
48353159 ACGGTCTC
65 ACGATTTT
* **
48353167 GCTTAATATC-AAACTTAATAAATTGAACTAAATTAACCTTTTTAAAAACACATAATTAAATAAA
1 ACTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAATAAA
48353231 CGATTTT
66 CGATTTT
48353238 ACTT
1 ACTT
48353242 GATAATTAAT
Statistics
Matches: 115, Mismatches: 28, Indels: 7
0.77 0.19 0.05
Matches are distributed among these distances:
70 23 0.20
71 59 0.51
72 33 0.29
ACGTcount: A:0.45, C:0.13, G:0.06, T:0.36
Consensus pattern (72 bp):
ACTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAATAAA
CGATTTT
Done.