Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 163 of 189
Found at i:48896242 original size:15 final size:15
Alignment explanation
Indices: 48896222--48896250 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
48896212 TTGCTTAAGA
48896222 ATATGTTTATGATTT
1 ATATGTTTATGATTT
48896237 ATATGTTTATGATT
1 ATATGTTTATGATT
48896251 AATAACATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.59
Consensus pattern (15 bp):
ATATGTTTATGATTT
Found at i:48896945 original size:3 final size:3
Alignment explanation
Indices: 48896937--48896973 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
48896927 TAAAGAATGC
48896937 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
48896974 TCCATCCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:48908537 original size:16 final size:16
Alignment explanation
Indices: 48908516--48908550 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
48908506 GACTTCATGC
48908516 TATCATTTATTACTAA
1 TATCATTTATTACTAA
48908532 TATCATTTATTACTAA
1 TATCATTTATTACTAA
48908548 TAT
1 TAT
48908551 TACTATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (16 bp):
TATCATTTATTACTAA
Found at i:48915785 original size:20 final size:19
Alignment explanation
Indices: 48915755--48915832 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 19
48915745 ACTGATGCAT
*
48915755 AACAAAGGCACCAAAGTGC
1 AACAGAGGCACCAAAGTGC
48915774 AGACAGAGGCA-CAAATGTGC
1 A-ACAGAGGCACCAAA-GTGC
* **
48915794 AATCGGAGGCACTGAAGTGC
1 AA-CAGAGGCACCAAAGTGC
*
48915814 AAACAGAGGCACCGAAGTG
1 -AACAGAGGCACCAAAGTG
48915833 TAATCCCATA
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
19 6 0.12
20 38 0.79
21 4 0.08
ACGTcount: A:0.40, C:0.22, G:0.29, T:0.09
Consensus pattern (19 bp):
AACAGAGGCACCAAAGTGC
Found at i:48924942 original size:12 final size:12
Alignment explanation
Indices: 48924910--48924947 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
48924900 ATTTTATTTA
*
48924910 TTATTACTATT-
1 TTATTATTATTG
*
48924921 TTATTTTTATTG
1 TTATTATTATTG
48924933 TTATTATTATTG
1 TTATTATTATTG
48924945 TTA
1 TTA
48924948 GTTCTAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (12 bp):
TTATTATTATTG
Found at i:48926628 original size:44 final size:45
Alignment explanation
Indices: 48926563--48926666 Score: 183
Period size: 44 Copynumber: 2.3 Consensus size: 45
48926553 CCAATAAAAC
*
48926563 TAAAACTAAAGTCTACCCAAACCCAATTATCATTTACCAACCCAA
1 TAAAACTAAAGTCTACCCAAACCCAATTACCATTTACCAACCCAA
*
48926608 T-AAACTAAAGTCTATCCAAACCCAATTACCATTTACCAACCCAA
1 TAAAACTAAAGTCTACCCAAACCCAATTACCATTTACCAACCCAA
48926652 TAAAACTAAAGTCTA
1 TAAAACTAAAGTCTA
48926667 AAAATAAAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
44 42 0.75
45 14 0.25
ACGTcount: A:0.45, C:0.29, G:0.03, T:0.23
Consensus pattern (45 bp):
TAAAACTAAAGTCTACCCAAACCCAATTACCATTTACCAACCCAA
Found at i:48930356 original size:20 final size:20
Alignment explanation
Indices: 48930333--48930469 Score: 67
Period size: 20 Copynumber: 7.3 Consensus size: 20
48930323 TATGTGTTAA
48930333 TTTTAAGACTTATGTAATGT
1 TTTTAAGACTTATGTAATGT
* * **
48930353 TTTT-A-A-TTATATACTCA
1 TTTTAAGACTTATGTAATGT
**
48930370 TTCAAAGACTTATGTAATGT
1 TTTTAAGACTTATGTAATGT
* *
48930390 TTTT-A-A-TTATGTAGTGA
1 TTTTAAGACTTATGTAATGT
**
48930407 TTCAAAGACTTATGTAAT-T
1 TTTTAAGACTTATGTAATGT
* * *
48930426 TTTTTA-A-TTATGTAGTGA
1 TTTTAAGACTTATGTAATGT
** *
48930444 TTCAAAGACTTATGTAATTT
1 TTTTAAGACTTATGTAATGT
48930464 TTTTAA
1 TTTTAA
48930470 TTATGTAGTG
Statistics
Matches: 77, Mismatches: 31, Indels: 18
0.61 0.25 0.14
Matches are distributed among these distances:
17 28 0.36
18 8 0.10
19 8 0.10
20 33 0.43
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.49
Consensus pattern (20 bp):
TTTTAAGACTTATGTAATGT
Found at i:48930378 original size:37 final size:37
Alignment explanation
Indices: 48930337--48930485 Score: 253
Period size: 37 Copynumber: 4.0 Consensus size: 37
48930327 TGTTAATTTT
* * *
48930337 AAGACTTATGTAATGTTTTTAATTATATACTCATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
48930374 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
48930411 AAGACTTATGTAATTTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
48930448 AAGACTTATGTAATTTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
48930485 A
1 A
48930486 TTCGGTTAAA
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 108 1.00
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.47
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:48930401 original size:17 final size:17
Alignment explanation
Indices: 48930379--48930476 Score: 52
Period size: 17 Copynumber: 5.4 Consensus size: 17
48930369 ATTCAAAGAC
48930379 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* ***
48930396 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
*
48930415 CTTATGTAATTTTTTTAA
1 -TTATGTAATGTTTTTAA
* ***
48930433 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
*
48930452 CTTATGTAATTTTTTTAA
1 -TTATGTAATGTTTTTAA
48930470 TTATGTA
1 TTATGTA
48930477 GTGATTCAAT
Statistics
Matches: 56, Mismatches: 19, Indels: 12
0.64 0.22 0.14
Matches are distributed among these distances:
17 24 0.43
18 8 0.14
19 8 0.14
20 16 0.29
ACGTcount: A:0.32, C:0.04, G:0.13, T:0.51
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:48934214 original size:16 final size:16
Alignment explanation
Indices: 48934188--48934224 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
48934178 TAAACCAAAT
48934188 TTAAT-TAATTAAACC
1 TTAATCTAATTAAACC
*
48934203 TTAATCTAATTAAATC
1 TTAATCTAATTAAACC
48934219 TTAATC
1 TTAATC
48934225 ACATTTAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAATCTAATTAAACC
Found at i:48934423 original size:12 final size:12
Alignment explanation
Indices: 48934406--48934433 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
48934396 AACTTTAATA
48934406 AACTTTTATACT
1 AACTTTTATACT
48934418 AACTTTTATACT
1 AACTTTTATACT
48934430 AACT
1 AACT
48934434 CCATAAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (12 bp):
AACTTTTATACT
Found at i:48943000 original size:12 final size:12
Alignment explanation
Indices: 48942980--48943016 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
48942970 TTATTTAGCC
48942980 ATGGATTCCACT
1 ATGGATTCCACT
*
48942992 ATGGGTTCCACT
1 ATGGATTCCACT
*
48943004 GTGGATTCCACT
1 ATGGATTCCACT
48943016 A
1 A
48943017 CCTTTATCTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (12 bp):
ATGGATTCCACT
Found at i:48946689 original size:7 final size:7
Alignment explanation
Indices: 48946679--48946706 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
48946669 CGTTCTCAGG
48946679 TCTCAAC
1 TCTCAAC
48946686 TCTCAAC
1 TCTCAAC
48946693 TCTCAAC
1 TCTCAAC
48946700 TCTCAAC
1 TCTCAAC
48946707 ATCTTCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.43, G:0.00, T:0.29
Consensus pattern (7 bp):
TCTCAAC
Found at i:48946951 original size:31 final size:31
Alignment explanation
Indices: 48946894--48946959 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
48946884 ATAAAATGAT
* *
48946894 ACTAAATTATTTGAAAGATTTCATTTAAGTC
1 ACTAAACTATTCGAAAGATTTCATTTAAGTC
*
48946925 ACTAAACTATTCGAAA-ACTTTTATTTAAGTC
1 ACTAAACTATTCGAAAGA-TTTCATTTAAGTC
48946956 ACTA
1 ACTA
48946960 GACTTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (31 bp):
ACTAAACTATTCGAAAGATTTCATTTAAGTC
Found at i:48948295 original size:20 final size:21
Alignment explanation
Indices: 48948272--48948313 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
48948262 ATTTTCAATA
48948272 TTTTTAAAT-ATAAAAATAAT
1 TTTTTAAATAATAAAAATAAT
48948292 TTTTTAAATAAATAAAAATAAT
1 TTTTTAAAT-AATAAAAATAAT
48948314 CAATAAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
22 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TTTTTAAATAATAAAAATAAT
Found at i:48954463 original size:21 final size:22
Alignment explanation
Indices: 48954434--48954483 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
48954424 TTTCAACTAG
*
48954434 TATAATAATAAACAATA-ATAA
1 TATACTAATAAACAATATATAA
**
48954455 TATACTAATAAGTAATATATAA
1 TATACTAATAAACAATATATAA
*
48954477 TGTACTA
1 TATACTA
48954484 CTATTATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.34
Consensus pattern (22 bp):
TATACTAATAAACAATATATAA
Found at i:48954477 original size:14 final size:14
Alignment explanation
Indices: 48954435--48954477 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
48954425 TTCAACTAGT
*
48954435 ATAATAATAAAC-A
1 ATAATAATATACTA
48954448 ATAATAATATACTA
1 ATAATAATATACTA
48954462 ATAAGTAATATA-TA
1 ATAA-TAATATACTA
48954476 AT
1 AT
48954478 GTACTACTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.41
14 9 0.33
15 7 0.26
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (14 bp):
ATAATAATATACTA
Found at i:48954832 original size:5 final size:5
Alignment explanation
Indices: 48954824--48954857 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
48954814 AATATATTAT
* *
48954824 ATATG ATATG ATATG ATATA ATATA ATATG ATAT
1 ATATG ATATG ATATG ATATG ATATG ATATG ATAT
48954858 AGCATTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (5 bp):
ATATG
Found at i:48954847 original size:15 final size:15
Alignment explanation
Indices: 48954813--48954858 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
48954803 TATAAACTAC
*
48954813 TAATATATTAT-ATA
1 TAATATAATATGATA
* *
48954827 TGATATGATATGATA
1 TAATATAATATGATA
48954842 TAATATAATATGATA
1 TAATATAATATGATA
48954857 TA
1 TA
48954859 GCATTATATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATATAATATGATA
Found at i:48955335 original size:501 final size:496
Alignment explanation
Indices: 48954342--48955316 Score: 1239
Period size: 501 Copynumber: 2.0 Consensus size: 496
48954332 TATCACTAAA
* * * *
48954342 AATATGATATGATATAGCATTATAAAATATAGTAGGAGGGCTAACTTTTAAATGTAGGAAAAGTA
1 AATATAATATGATATAGCATTATAAAATATAGCAGGAGAGCTAACTTTCAAATGTAGGAAAAGTA
* * * * *
48954407 TAAGAACTTTGAGTATATTTCAACTAGTATAATAATAAACAATAATAATATACTAATAAGTAATA
66 TAAGAACTTAGAGCAGATTTCAACCAGTATAATAACAAACAATAATAATATACTAATAAGTAATA
* *
48954472 TATAATGTACTACTATTATTATATTATATATTATAATAAAAGATATAGTATTACATGATATTATA
131 TATAATGTACTACTATTATTATACTATATATTATAATAAAAGATACAGTATTACATGATATTATA
* * *
48954537 ATGTTTAATCATTTATGCATATATATATAAACCAGTAATATATGATATGATATAGCATCATATAA
196 ATATTTAATCATTGATGCATATATATATAAACCAGTAATATATGATATGATATAACATCATATAA
* * * *
48954602 TATAGTAGGAAGGCTAACTTTCAAATGTATGAAAAGTATAGGGACTTATAGCATATTTCAACTAG
261 TATAGTAGGAAGGCTAACTTTCAAATATATGAAAAGTATAGGGACTTAGAACATATTTCAACCAG
* *
48954667 TATAATAATAAACAATAATGTAAAATATAAAATAATATGTAATGTACTACTATTATATAACTATT
326 TATAATAATAAACAATAA-GT-AAATAT-AAATAATATGTAA-GTACTAC-ATAATATAACTACT
* *
48954732 ATTATATTATAGATTATAATAAAGGATATAATATTACATAATATTATAAAGTTTAATCATTGATG
386 ATTATATTATAGATTACAATAAAGGATATAATATTACATAATATTATAAAGTTTAATCATAGATG
48954797 CATATATATAAACTACTAATATATTATATATGATATGATATGATAT
451 CATATATATAAACTACTAATATATTATATATGATATGATATGATAT
* * * *
48954843 AATATAATATGATATAGCATTATATAATATAGCGGGAGAGTTAACTTTCAAATGTATGATAAA-T
1 AATATAATATGATATAGCATTATAAAATATAGCAGGAGAGCTAACTTTCAAATGTAGGA-AAAGT
* * * *
48954907 AT-AGTGACTTAGAGCAGATTTCAACCAGTATAATAACAAACAATAAT-ATATAGTATTAATTAA
65 ATAAG-AACTTAGAGCAGATTTCAACCAGTATAATAACAAACAATAATAATATACTAATAAGTAA
* *
48954970 TATATAATTTACTACTATTATATATAACTAT-TATTATAATAAAATATACAGTATTACATGATAT
129 TATATAATGTACTACTATTAT-TAT-ACTATATATTATAATAAAAGATACAGTATTACATGATAT
* * * *
48955034 TATAATATTTAATCATTGATGCATATATAAACTGTTATA-TATTAGATATTACTTGATATGATAT
192 TATAATATTTAATCATTGATGCATATAT--A-T-ATAAACCAGTA-ATA-TA--TGATATGATAT
* *
48955098 AACATTATATAATATAGTAGGAGGGCTAACTTTCAAATATATGAAAAGTATAGGGACTTAGAACA
249 AACATCATATAATATAGTAGGAAGGCTAACTTTCAAATATATGAAAAGTATAGGGACTTAGAACA
* *
48955163 TATTTCAACCAGTATAATAATAAACATTAA-T-AAT-T-AAT-A-AT-TAA-TA-TA-A-AATGT
314 TATTTCAACCAGTATAATAATAAACAATAAGTAAATATAAATAATATGTAAGTACTACATAATAT
* * * *
48955217 -ACTACTATTATATTATAGATTACAATAAAAGG-TATAGTATTGCATGATATTATAATGTTTAAT
379 AACTACTATTATATTATAGATTACAAT-AAAGGATATAATATTACATAATATTATAAAGTTTAAT
* * *
48955280 CATAGATGTATATATATAAGCTATTAATATATTATAT
443 CATAGATGCATATATATAAACTACTAATATATTATAT
48955317 GCCATATGGT
Statistics
Matches: 414, Mismatches: 47, Indels: 36
0.83 0.09 0.07
Matches are distributed among these distances:
491 84 0.20
492 8 0.02
493 1 0.00
495 2 0.00
496 2 0.00
498 3 0.01
499 2 0.00
500 36 0.09
501 153 0.37
502 7 0.02
503 2 0.00
504 7 0.02
505 6 0.01
506 3 0.01
508 98 0.24
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.37
Consensus pattern (496 bp):
AATATAATATGATATAGCATTATAAAATATAGCAGGAGAGCTAACTTTCAAATGTAGGAAAAGTA
TAAGAACTTAGAGCAGATTTCAACCAGTATAATAACAAACAATAATAATATACTAATAAGTAATA
TATAATGTACTACTATTATTATACTATATATTATAATAAAAGATACAGTATTACATGATATTATA
ATATTTAATCATTGATGCATATATATATAAACCAGTAATATATGATATGATATAACATCATATAA
TATAGTAGGAAGGCTAACTTTCAAATATATGAAAAGTATAGGGACTTAGAACATATTTCAACCAG
TATAATAATAAACAATAAGTAAATATAAATAATATGTAAGTACTACATAATATAACTACTATTAT
ATTATAGATTACAATAAAGGATATAATATTACATAATATTATAAAGTTTAATCATAGATGCATAT
ATATAAACTACTAATATATTATATATGATATGATATGATAT
Found at i:48955396 original size:229 final size:236
Alignment explanation
Indices: 48954883--48955460 Score: 710
Period size: 229 Copynumber: 2.5 Consensus size: 236
48954873 AGCGGGAGAG
* * *
48954883 TTAACTTTCAAATGTATGATAAA-TATAGTGACTTAGAGCAGATTTCAACCAGTATAATAACAAA
1 TTAACTTTCAAATGTATGA-AAAGTATAGGGACTTAGAGCATATTTCAACCAGTATAATAATAAA
* * * *
48954947 CAATAATATATAGTATTAATTAATATATAATTTACTACTATTATATATAACTATTATTATAATAA
65 CAATAATATATA-TAATAATTAATATATAATGTACTACTATTATATATAACTATGATTACAATAA
* * *
48955012 AATATACAGTATTACATGATATTATAATATTTAATCATTGATGCATATATAAACTGTTATATATT
129 AAGATACAGTATTACATGATATTATAATATTTAATCATAGATGCATATATAAACTATTATATATT
* * * * *
48955077 AGATATTACTTGATATGATATAACATTATATAATATAGTAGGAGGG
194 A-ATATTAC-TCATATGATATAACATGACAT-ATATAGTAGAAGGA
* * *
48955123 CTAACTTTCAAATATATGAAAAGTATAGGGACTTAGAACATATTTCAACCAGTATAATAATAAAC
1 TTAACTTTCAAATGTATGAAAAGTATAGGGACTTAGAGCATATTTCAACCAGTATAATAATAAAC
* *
48955188 ATTAATA-AT-TAATAATTAATATAAAATGTACTACTATTATAT-T-A-TA-GATTACAATAAAA
66 AATAATATATATAATAATTAATATATAATGTACTACTATTATATATAACTATGATTACAATAAAA
* * * * *
48955247 GGTATAGTATTGCATGATATTATAATGTTTAATCATAGATGTATATATATAAGCTATTAATATAT
131 GATACAGTATTACATGATATTATAATATTTAATCATAGATGCATATATA-AA-CTATT-ATATAT
* * * * *
48955312 T-ATA-TGC-CATATGGTATGATATGACAT-TATGGTAGAAGGA
193 TAATATTACTCATATGATATAACATGACATATATAGTAGAAGGA
*
48955352 TTAACTTTCAAATGTATGAAAAGTCTAGGGACTTAGAGCATATTTCAACCAGTATAATAATAAAC
1 TTAACTTTCAAATGTATGAAAAGTATAGGGACTTAGAGCATATTTCAACCAGTATAATAATAAAC
*
48955417 AGTAATATATGATAATAATTAATATATAATGTACTACTATTATA
66 AATAATATAT-ATAATAATTAATATATAATGTACTACTATTATA
48955461 ACATGATATT
Statistics
Matches: 295, Mismatches: 36, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
229 77 0.26
230 2 0.01
231 14 0.05
232 31 0.11
233 55 0.19
234 7 0.02
235 5 0.02
236 8 0.03
237 30 0.10
239 5 0.02
240 61 0.21
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (236 bp):
TTAACTTTCAAATGTATGAAAAGTATAGGGACTTAGAGCATATTTCAACCAGTATAATAATAAAC
AATAATATATATAATAATTAATATATAATGTACTACTATTATATATAACTATGATTACAATAAAA
GATACAGTATTACATGATATTATAATATTTAATCATAGATGCATATATAAACTATTATATATTAA
TATTACTCATATGATATAACATGACATATATAGTAGAAGGA
Found at i:48957482 original size:13 final size:13
Alignment explanation
Indices: 48957464--48957489 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48957454 ATATACGTGT
48957464 CATGACACATTGC
1 CATGACACATTGC
48957477 CATGACACATTGC
1 CATGACACATTGC
48957490 ATTAGGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (13 bp):
CATGACACATTGC
Found at i:48965264 original size:9 final size:9
Alignment explanation
Indices: 48965198--48965271 Score: 62
Period size: 9 Copynumber: 8.2 Consensus size: 9
48965188 ATAGTGATTC
48965198 AATTCGGTT
1 AATTCGGTT
* *
48965207 AATTAGGGT
1 AATTCGGTT
48965216 AATTCTGG-T
1 AATTC-GGTT
48965225 AATTCGAG-T
1 AATTCG-GTT
*
48965234 AATCCGGTT
1 AATTCGGTT
**
48965243 AATTCGGGA
1 AATTCGGTT
*
48965252 AATTTGGTT
1 AATTCGGTT
48965261 AATTCGGTT
1 AATTCGGTT
48965270 AA
1 AA
48965272 CCGACCGAAT
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
8 2 0.04
9 47 0.92
10 2 0.04
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.38
Consensus pattern (9 bp):
AATTCGGTT
Found at i:48965267 original size:18 final size:18
Alignment explanation
Indices: 48965198--48965267 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
48965188 ATAGTGATTC
*
48965198 AATTCGGTTAATTAGGGT
1 AATTCGGTTAATTCGGGT
*
48965216 AATTCTGG-TAATTCGAGT
1 AATTC-GGTTAATTCGGGT
* *
48965234 AATCCGGTTAATTCGGGA
1 AATTCGGTTAATTCGGGT
*
48965252 AATTTGGTTAATTCGG
1 AATTCGGTTAATTCGG
48965268 TTAACCGACC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
17 2 0.05
18 39 0.91
19 2 0.05
ACGTcount: A:0.27, C:0.10, G:0.26, T:0.37
Consensus pattern (18 bp):
AATTCGGTTAATTCGGGT
Found at i:48970148 original size:21 final size:20
Alignment explanation
Indices: 48970122--48970168 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 20
48970112 AATTTCCTTT
*
48970122 TAATAATCGAAATTTATTTTA
1 TAATAATCGAAA-ATATTTTA
*
48970143 TAATAA--GAAAATATTTTG
1 TAATAATCGAAAATATTTTA
48970161 TAATAATC
1 TAATAATC
48970169 AGTACCATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
18 12 0.55
19 4 0.18
21 6 0.27
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (20 bp):
TAATAATCGAAAATATTTTA
Found at i:48970357 original size:27 final size:26
Alignment explanation
Indices: 48970310--48970363 Score: 74
Period size: 25 Copynumber: 2.0 Consensus size: 26
48970300 ACAAATGCTC
48970310 ATTTTTATATAATTAAAATAT-TCAT
1 ATTTTTATATAATTAAAATATGTCAT
*
48970335 ATTTTTATACTAGGTTAAAATATGTCAT
1 ATTTTTATA-TA-ATTAAAATATGTCAT
48970363 A
1 A
48970364 AGTCTTTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 9 0.36
26 2 0.08
27 9 0.36
28 5 0.20
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.48
Consensus pattern (26 bp):
ATTTTTATATAATTAAAATATGTCAT
Found at i:48970740 original size:15 final size:15
Alignment explanation
Indices: 48970717--48970754 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
48970707 TATATACTAC
48970717 AAAATATTTACTATT
1 AAAATATTTACTATT
* *
48970732 AATATATTTATTATT
1 AAAATATTTACTATT
48970747 AAAATATT
1 AAAATATT
48970755 AATATTGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
AAAATATTTACTATT
Found at i:48970799 original size:13 final size:14
Alignment explanation
Indices: 48970781--48970814 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
48970771 CAATAATGAA
48970781 TATTATTTTAAA-T
1 TATTATTTTAAATT
48970794 TATTATTTTAAATT
1 TATTATTTTAAATT
48970808 TATTATT
1 TATTATT
48970815 AAAATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TATTATTTTAAATT
Found at i:48970956 original size:6 final size:6
Alignment explanation
Indices: 48970947--48970977 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
48970937 TAAGCATTTT
48970947 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA T
48970978 TTATTATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:48971471 original size:91 final size:89
Alignment explanation
Indices: 48971342--48971542 Score: 233
Period size: 91 Copynumber: 2.2 Consensus size: 89
48971332 AGGTAATATA
*** * * * *
48971342 TTTTTTTTGCACTCAATTGGGTACTTAAACTTTCAAAATGTATCAAAAAA-TCCCTCAAACTTTA
1 TTTTTTTTGCACTCAATTGCACACTTAAACTATCAAAATGCAT-AAAAAAGACCCTCAAAATTT-
* *
48971406 AAAAAAAAAGTAATTAAGCCCCTGTTT
64 AAAAAAAAAGAAATTAAGCCCCT-ATT
* * **
48971433 TTTTTTTTGCACTCAATTGCACACTTGAGCTATCAAAATGCATAAAAAAGACCCTCAAAATTTTT
1 TTTTTTTTGCACTCAATTGCACACTTAAACTATCAAAATGCATAAAAAAGACCCTCAAAATTTAA
**
48971498 TTAAAAAGAAATTAAGCCCCTATT
66 AAAAAAAGAAATTAAGCCCCTATT
48971522 TTTTTTTTGCACTCAATTGCA
1 TTTTTTTTGCACTCAATTGCA
48971543 AAAATGTATC
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
89 23 0.24
90 24 0.26
91 47 0.50
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (89 bp):
TTTTTTTTGCACTCAATTGCACACTTAAACTATCAAAATGCATAAAAAAGACCCTCAAAATTTAA
AAAAAAAGAAATTAAGCCCCTATT
Found at i:48971724 original size:26 final size:26
Alignment explanation
Indices: 48971695--48971744 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
48971685 TAAAAATTAT
48971695 TAAAAT-TGTTAAAATTTAATAAAATA
1 TAAAATAT-TTAAAATTTAATAAAATA
*
48971721 TAAAATATTTAAAATTTACTAAAA
1 TAAAATATTTAAAATTTAATAAAA
48971745 AAATAGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (26 bp):
TAAAATATTTAAAATTTAATAAAATA
Found at i:48971771 original size:34 final size:34
Alignment explanation
Indices: 48971712--48971788 Score: 86
Period size: 34 Copynumber: 2.2 Consensus size: 34
48971702 GTTAAAATTT
*
48971712 AATAAAATATAAAATATTTAAAA-TTTACTAAAAA
1 AATAAAATATAAAATATGTAAAATTTTA-TAAAAA
*
48971746 AATAGAAATATATAAT-TGTAAAATTTTATAAAAA
1 AATA-AAATATAAAATATGTAAAATTTTATAAAAA
*
48971780 TCATAAAAT
1 -AATAAAAT
48971789 GCATAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
34 20 0.54
35 17 0.46
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (34 bp):
AATAAAATATAAAATATGTAAAATTTTATAAAAA
Found at i:48972086 original size:19 final size:20
Alignment explanation
Indices: 48972064--48972107 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
48972054 TTTCTATATA
48972064 TTTTATAATATTTTAC-AAT
1 TTTTATAATATTTTACTAAT
* *
48972083 TTTTATAATCTTTTTCTAAT
1 TTTTATAATATTTTACTAAT
48972103 TTTTA
1 TTTTA
48972108 ATAAAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTATAATATTTTACTAAT
Found at i:48972096 original size:10 final size:9
Alignment explanation
Indices: 48972064--48972201 Score: 57
Period size: 9 Copynumber: 14.4 Consensus size: 9
48972054 TTTCTATATA
48972064 TTTTATAAT
1 TTTTATAAT
*
48972073 ATTTTACAAT
1 -TTTTATAAT
48972083 TTTTATAATCT
1 TTTTATAA--T
*
48972094 TTTTCTAAT
1 TTTTATAAT
*
48972103 TTTTAATAAA
1 TTTT-ATAAT
**
48972113 AATTA-AATGT
1 TTTTATAA--T
*
48972123 TTATTATATT
1 TT-TTATAAT
*
48972133 CTTTTATTAAAA
1 -TTTTA-T-AAT
*
48972145 TTTAATAAT
1 TTTTATAAT
48972154 TTTTATAAT
1 TTTTATAAT
*
48972163 TTTTATAAC
1 TTTTATAAT
*
48972172 TTTTATTGAT
1 TTTTA-TAAT
48972182 TTTTAT--T
1 TTTTATAAT
*
48972189 TTTTATCAT
1 TTTTATAAT
48972198 TTTT
1 TTTT
48972202 TGTCACATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 27
0.68 0.13 0.19
Matches are distributed among these distances:
7 7 0.07
8 2 0.02
9 42 0.44
10 25 0.26
11 18 0.19
12 2 0.02
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:48974761 original size:11 final size:11
Alignment explanation
Indices: 48974713--48974763 Score: 61
Period size: 11 Copynumber: 4.7 Consensus size: 11
48974703 AGAATAAAAA
48974713 TTAAATTTATT
1 TTAAATTTATT
*
48974724 TTAAAATTATT
1 TTAAATTTATT
*
48974735 ATTTAA-TTA-T
1 -TTAAATTTATT
48974745 TTAAATTTATT
1 TTAAATTTATT
48974756 TTAAATTT
1 TTAAATTT
48974764 GTAATTTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 4 0.12
10 4 0.12
11 22 0.65
12 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTAAATTTATT
Found at i:48974771 original size:32 final size:30
Alignment explanation
Indices: 48974713--48974788 Score: 89
Period size: 32 Copynumber: 2.5 Consensus size: 30
48974703 AGAATAAAAA
*
48974713 TTAAATTTATTTTAAAATTATTATTTAATTAT
1 TTAAATTTATTTTAAAATTATAATTT-ATT-T
* *
48974745 TTAAATTTATTTTAAATTTGTAATTTATTT
1 TTAAATTTATTTTAAAATTATAATTTATTT
**
48974775 TTAAAAATATTTTA
1 TTAAATTTATTTTA
48974789 TATTATTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 13 0.33
31 3 0.08
32 23 0.59
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (30 bp):
TTAAATTTATTTTAAAATTATAATTTATTT
Found at i:48977575 original size:23 final size:23
Alignment explanation
Indices: 48977547--48977594 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
48977537 GGATAACCAT
* *
48977547 ATATCGGAAAGTTCAAGCGAGCC
1 ATATCGGAAAGCTCAAGAGAGCC
* *
48977570 ATATCGGGAAGCTCTAGAGAGCC
1 ATATCGGAAAGCTCAAGAGAGCC
48977593 AT
1 AT
48977595 TAATCAGGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (23 bp):
ATATCGGAAAGCTCAAGAGAGCC
Found at i:48977791 original size:25 final size:25
Alignment explanation
Indices: 48977731--48977791 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
48977721 GAGCTATTAT
* *
48977731 CGAGAAGCTAGCAAGAACTATATAA
1 CGAGAAGCTCGCAAGAACCATATAA
* *
48977756 CG-GAAAACTCGTAAGAACCATATAA
1 CGAG-AAGCTCGCAAGAACCATATAA
48977781 CGAGAAGCTCG
1 CGAGAAGCTCG
48977792 AGAGGGCTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
24 1 0.03
25 27 0.93
26 1 0.03
ACGTcount: A:0.44, C:0.20, G:0.21, T:0.15
Consensus pattern (25 bp):
CGAGAAGCTCGCAAGAACCATATAA
Found at i:48978156 original size:5 final size:5
Alignment explanation
Indices: 48978127--48978165 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
48978117 TAAATTTAGC
* *
48978127 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
48978166 CATCTTAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:48985259 original size:24 final size:23
Alignment explanation
Indices: 48985225--48985297 Score: 83
Period size: 24 Copynumber: 3.1 Consensus size: 23
48985215 TCCGGGCTGT
*
48985225 ATAACAGGAAGCTCATAAGAGCC
1 ATAATAGGAAGCTCATAAGAGCC
*
48985248 ATAATTAGGAAGCTCATGAGAGCC
1 ATAA-TAGGAAGCTCATAAGAGCC
* **
48985272 AATAATAGGTAGCTCCGAAGAGCC
1 -ATAATAGGAAGCTCATAAGAGCC
48985296 AT
1 AT
48985298 TAACGGGAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
23 6 0.14
24 32 0.76
25 4 0.10
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (23 bp):
ATAATAGGAAGCTCATAAGAGCC
Found at i:48985348 original size:23 final size:23
Alignment explanation
Indices: 48985322--48985369 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
48985312 GGATAGCTAT
* * *
48985322 ATATCGAGAAGTTCAAGGGAGCC
1 ATATCAAGAAGCTCAAGAGAGCC
*
48985345 ATATCAAGAAGCTCCAGAGAGCC
1 ATATCAAGAAGCTCAAGAGAGCC
48985368 AT
1 AT
48985370 TAATCAGGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.17
Consensus pattern (23 bp):
ATATCAAGAAGCTCAAGAGAGCC
Found at i:48987816 original size:59 final size:60
Alignment explanation
Indices: 48987745--48987861 Score: 146
Period size: 62 Copynumber: 1.9 Consensus size: 60
48987735 ATCACTTTAA
* * * * *
48987745 TATTAAATTAATATAATATTTATC-AAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAAAATATTTATCTAAGATAAACATTAAACTAAATTTAATATTAAATCT
* *
48987804 TATTAAAATAATAAAATGTTTATCTATAATATAAACATTAAACTAAATTTAATATTAA
1 TATTAAAATAATAAAATATTTATC--TAAGATAAACATTAAACTAAATTTAATATTAA
48987862 GATAATCATT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 21 0.44
62 27 0.56
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (60 bp):
TATTAAAATAATAAAATATTTATCTAAGATAAACATTAAACTAAATTTAATATTAAATCT
Found at i:48988728 original size:45 final size:45
Alignment explanation
Indices: 48988677--48988768 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
48988667 AATCATGGAG
48988677 TCAGTCTACAAGAAGTACCATGATTGTAAACTCCTTATTGTATAC
1 TCAGTCTACAAGAAGTACCATGATTGTAAACTCCTTATTGTATAC
48988722 TCAGTCTACAAGAAGTACCATGATTGTAAACTCCTTATTGTATAC
1 TCAGTCTACAAGAAGTACCATGATTGTAAACTCCTTATTGTATAC
48988767 TC
1 TC
48988769 TTTACGGAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.34
Consensus pattern (45 bp):
TCAGTCTACAAGAAGTACCATGATTGTAAACTCCTTATTGTATAC
Found at i:48989858 original size:14 final size:14
Alignment explanation
Indices: 48989834--48989890 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 14
48989824 TAAATTTCTT
48989834 TTTATAATTTTTAAA
1 TTTAT-ATTTTTAAA
*
48989849 CTTT-TTTTTTATAAA
1 -TTTATATTTT-TAAA
48989864 TTTATATTTTTAAA
1 TTTATATTTTTAAA
*
48989878 TATATTATTTTTA
1 TTTA-TATTTTTA
48989891 TTTCTAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
14 14 0.40
15 18 0.51
16 3 0.09
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTATATTTTTAAA
Found at i:48989867 original size:21 final size:21
Alignment explanation
Indices: 48989824--48989872 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
48989814 CATTTTTCTA
*
48989824 TAAATTTCTTTTTATAATTTT
1 TAAATTTCTTTTTATAATATT
*
48989845 TAAACTTTTTTTTTATAA-ATT
1 TAAA-TTTCTTTTTATAATATT
*
48989866 TATATTT
1 TAAATTT
48989873 TTAAATATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.12
21 9 0.38
22 12 0.50
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (21 bp):
TAAATTTCTTTTTATAATATT
Found at i:49008403 original size:42 final size:44
Alignment explanation
Indices: 49008325--49008422 Score: 130
Period size: 42 Copynumber: 2.3 Consensus size: 44
49008315 AGATGTGGTT
* *
49008325 TTACATGT-AATCAAATAACGATGCCACTGTCCCAAACAAGGTC
1 TTACACGTAAATCAAATAACGATGCCAATGTCCCAAACAAGGTC
* * *
49008368 TTACACG-AAATCATAT-ACGATGCCAATGTCTCAAACATGGTC
1 TTACACGTAAATCAAATAACGATGCCAATGTCCCAAACAAGGTC
49008410 TTACACGTAAATC
1 TTACACGTAAATC
49008423 TCAAATCGAT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
42 30 0.62
43 18 0.38
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (44 bp):
TTACACGTAAATCAAATAACGATGCCAATGTCCCAAACAAGGTC
Found at i:49022436 original size:13 final size:13
Alignment explanation
Indices: 49022418--49022479 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
49022408 AACATGGAGT
49022418 TAAGTGGTACCGC
1 TAAGTGGTACCGC
* *
49022431 TAAGTGTTACCTC
1 TAAGTGGTACCGC
* **
49022444 TAAGTGATACCAT
1 TAAGTGGTACCGC
*
49022457 TAAGTGGTATCG-
1 TAAGTGGTACCGC
49022469 TAAGGTGGTAC
1 TAA-GTGGTAC
49022480 TGCGAACTGA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
12 3 0.08
13 36 0.92
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (13 bp):
TAAGTGGTACCGC
Found at i:49042665 original size:19 final size:19
Alignment explanation
Indices: 49042641--49042695 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
49042631 CATAATGCAA
49042641 ATTTAATATATATTTTATT
1 ATTTAATATATATTTTATT
* * *
49042660 ATTTAATATAAAATATATT
1 ATTTAATATATATTTTATT
* *
49042679 ATTTATTATTTATTTTA
1 ATTTAATATATATTTTA
49042696 CGTATATAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTAATATATATTTTATT
Found at i:49048632 original size:16 final size:16
Alignment explanation
Indices: 49048601--49048637 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
49048591 ATGTGAAGAA
49048601 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
49048617 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
49048633 TATTA
1 TATTA
49048638 AAATAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:49048688 original size:16 final size:16
Alignment explanation
Indices: 49048660--49048706 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
49048650 AATATTAAAT
49048660 AATT-TATTAAATAATA
1 AATTATATT-AATAATA
*
49048676 AATTATATTAATAATT
1 AATTATATTAATAATA
* *
49048692 TATTATATGAATAAT
1 AATTATATTAATAAT
49048707 TATAATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 23 0.85
17 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
AATTATATTAATAATA
Found at i:49048692 original size:28 final size:29
Alignment explanation
Indices: 49048651--49048710 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 29
49048641 TAAATTTAGA
49048651 ATATTAAATAATTTATTAAAT-AATAAATT
1 ATATTAAATAATTTATTAAATGAAT-AATT
*
49048680 ATATT-AATAATTTATTATATGAATAATT
1 ATATTAAATAATTTATTAAATGAATAATT
49048708 ATA
1 ATA
49048711 ATATTTTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 21 0.72
29 8 0.28
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
ATATTAAATAATTTATTAAATGAATAATT
Found at i:49048707 original size:16 final size:15
Alignment explanation
Indices: 49048657--49048707 Score: 61
Period size: 13 Copynumber: 3.5 Consensus size: 15
49048647 TAGAATATTA
*
49048657 AATAATTTATTAAAT
1 AATAATTTATTATAT
*
49048672 AATAAATTA-TAT-T
1 AATAATTTATTATAT
49048685 AATAATTTATTATAT
1 AATAATTTATTATAT
49048700 GAATAATT
1 -AATAATT
49048708 ATAATATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 9 0.30
14 5 0.17
15 9 0.30
16 7 0.23
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
AATAATTTATTATAT
Found at i:49048734 original size:22 final size:22
Alignment explanation
Indices: 49048686--49048739 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
49048676 AATTATATTA
49048686 ATAAT-TTATTATATGAATAATT
1 ATAATATT-TTATATGAATAATT
* *
49048708 ATAATATTTTATATTAATATTT
1 ATAATATTTTATATGAATAATT
*
49048730 TTAATATTTT
1 ATAATATTTT
49048740 TAAAAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 26 0.93
23 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
ATAATATTTTATATGAATAATT
Found at i:49052321 original size:22 final size:23
Alignment explanation
Indices: 49052295--49052343 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
49052285 AATAATTTAG
*
49052295 TTTAGATTTATTTTTATT-TAAA
1 TTTAGATATATTTTTATTATAAA
*
49052317 TTTAGATATATTTTTATTATTAA
1 TTTAGATATATTTTTATTATAAA
49052340 TTTA
1 TTTA
49052344 TTGTATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTAGATATATTTTTATTATAAA
Found at i:49064565 original size:60 final size:60
Alignment explanation
Indices: 49064441--49064642 Score: 198
Period size: 60 Copynumber: 3.4 Consensus size: 60
49064431 TAGGCCATCT
* * *
49064441 TAAATCTTATTTGAAACAC-CCAGCAGATA-CCA-AGGTCAGCCAAACC-AATAAGCAGTCC
1 TAAATCTTACTTGAAACTCTCAAGCAGATAGCCACA--TCAGCCAAACCTAATAAGCAGTCC
* * * * *
49064499 TAAATCTTACTTGAAACTCTCAAGCATATATCCACATCAGCCAAGCCTAATAAGCACTCG
1 TAAATCTTACTTGAAACTCTCAAGCAGATAGCCACATCAGCCAAACCTAATAAGCAGTCC
* * * *
49064559 TAAATCTTCCTTGAAA-TGGTCATGCAGATAGCCACATCAGCCAAACATAATAAGCAGTCC
1 TAAATCTTACTTGAAACT-CTCAAGCAGATAGCCACATCAGCCAAACCTAATAAGCAGTCC
* ** *
49064619 TAAAACAAACTTGTAACTCTCAAG
1 TAAATCTTACTTGAAACTCTCAAG
49064643 TAGACATGAA
Statistics
Matches: 115, Mismatches: 23, Indels: 10
0.78 0.16 0.07
Matches are distributed among these distances:
58 17 0.15
59 19 0.17
60 77 0.67
61 2 0.02
ACGTcount: A:0.39, C:0.26, G:0.12, T:0.23
Consensus pattern (60 bp):
TAAATCTTACTTGAAACTCTCAAGCAGATAGCCACATCAGCCAAACCTAATAAGCAGTCC
Found at i:49068142 original size:11 final size:11
Alignment explanation
Indices: 49068121--49068150 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
49068111 TAAAAAAAAA
49068121 TTAAAAGTATTT
1 TTAAAA-TATTT
49068133 TTAAAATATTT
1 TTAAAATATTT
49068144 TTAAAAT
1 TTAAAAT
49068151 TAAAAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
TTAAAATATTT
Found at i:49068181 original size:11 final size:11
Alignment explanation
Indices: 49068167--49068192 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
49068157 AATTTAAAAA
49068167 AAAAGTATTTT
1 AAAAGTATTTT
49068178 AAAAGTATTTT
1 AAAAGTATTTT
49068189 AAAA
1 AAAA
49068193 TTTATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:49084680 original size:27 final size:27
Alignment explanation
Indices: 49084650--49084701 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
49084640 AGGGCTGAAG
49084650 GTGGTGCCAATGAGAATGGCGGCACCA
1 GTGGTGCCAATGAGAATGGCGGCACCA
49084677 GTGGTGCCAATGAGAATGGCGGCAC
1 GTGGTGCCAATGAGAATGGCGGCAC
49084702 AGGACTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.38, T:0.15
Consensus pattern (27 bp):
GTGGTGCCAATGAGAATGGCGGCACCA
Found at i:49085115 original size:27 final size:26
Alignment explanation
Indices: 49085059--49085115 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
49085049 ATGAGGATAG
* **
49085059 TTTATTAAATAAAAAAATTATACTTT
1 TTTATTAAATAAAAAAATTAAACTAA
* *
49085085 TTTATTTAATAAAAAAGTATAAACTAA
1 TTTATTAAATAAAAAAAT-TAAACTAA
49085112 TTTA
1 TTTA
49085116 GCAATTTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.44
Consensus pattern (26 bp):
TTTATTAAATAAAAAAATTAAACTAA
Found at i:49088020 original size:20 final size:21
Alignment explanation
Indices: 49087997--49088036 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
49087987 GGGTTCATCA
49087997 AATATA-TACTTTAAATATAT
1 AATATATTACTTTAAATATAT
*
49088017 AATATATTATTTTAAATATA
1 AATATATTACTTTAAATATA
49088037 ATATAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (21 bp):
AATATATTACTTTAAATATAT
Found at i:49088039 original size:5 final size:5
Alignment explanation
Indices: 49088013--49088055 Score: 52
Period size: 5 Copynumber: 8.8 Consensus size: 5
49088003 TACTTTAAAT
* * *
49088013 ATATA ATATA TTATT TTA-A ATATA ATATA ATATA ATATA ATAT
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATAT
49088056 TTTAGTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 2 0.06
5 31 0.94
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (5 bp):
ATATA
Found at i:49090136 original size:3 final size:3
Alignment explanation
Indices: 49090130--49090176 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
49090120 TTTTTTAATG
* * *
49090130 TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTG CTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
49090177 ATATAATTAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:49097968 original size:21 final size:21
Alignment explanation
Indices: 49097942--49097982 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
49097932 ATCTGCTCAA
* *
49097942 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
49097963 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
49097983 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:49105797 original size:99 final size:97
Alignment explanation
Indices: 49105629--49105858 Score: 302
Period size: 99 Copynumber: 2.4 Consensus size: 97
49105619 TCAGCTGACC
* * * * * *
49105629 TGGGAACAGATCCATCTTCTT-TAGGGAAAACCTCTATTTTGGGTGCAAACATATCATTCGTACT
1 TGGGAACAGATCCATCTTCTTCAATGAAAAACCTCTATTTCGGGTGCAAACATATCAATCGTACA
* *
49105693 GCAGTCAGCTGAGCCAGAGGTTGACGACGACT
66 GCAGTCAGCTGAGCCAGAAGTTGAAGACGACT
* * *
49105725 TGGGAACAGATCCATCTTCTTCAATGAAAAACTCCTCTATTTCGGTTGGAACCATATCAATCGTA
1 TGGGAACAGATCCATCTTCTTCAATGAAAAA--CCTCTATTTCGGGTGCAAACATATCAATCGTA
* *
49105790 CAGCAGTCAGCTGAGCCAGAATTTGAAGACGATT
64 CAGCAGTCAGCTGAGCCAGAAGTTGAAGACGACT
*
49105824 TGGGAACAGATCCATCTTCTTCAATG-GAAACCTCT
1 TGGGAACAGATCCATCTTCTTCAATGAAAAACCTCT
49105859 TCCCTTTCGG
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
96 26 0.22
97 6 0.05
98 3 0.03
99 82 0.70
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (97 bp):
TGGGAACAGATCCATCTTCTTCAATGAAAAACCTCTATTTCGGGTGCAAACATATCAATCGTACA
GCAGTCAGCTGAGCCAGAAGTTGAAGACGACT
Found at i:49106602 original size:31 final size:31
Alignment explanation
Indices: 49106535--49106602 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
49106525 TTACAGTGTT
* * *
49106535 AATAAATAAACTTAAAATTTTAAATTCAAAA
1 AATAAATAAACTTAAAATCTAAAAATCAAAA
49106566 AATAAATAAAC-TAAAATCCTAAAAAT-AAAA
1 AATAAATAAACTTAAAAT-CTAAAAATCAAAA
49106596 ATATAAA
1 A-ATAAA
49106603 AATTAAATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 11 0.34
31 21 0.66
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.26
Consensus pattern (31 bp):
AATAAATAAACTTAAAATCTAAAAATCAAAA
Found at i:49106940 original size:25 final size:25
Alignment explanation
Indices: 49106912--49106959 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
49106902 AAGATTAATT
*
49106912 TTTA-TACCTCAACTTTTTGACAAAA
1 TTTAGTACCTCAAATTTTT-ACAAAA
49106937 TTTAGTACCTCAAATTTTTACAA
1 TTTAGTACCTCAAATTTTTACAA
49106960 TGTCCTAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.42
Consensus pattern (25 bp):
TTTAGTACCTCAAATTTTTACAAAA
Found at i:49109287 original size:20 final size:20
Alignment explanation
Indices: 49109253--49109294 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
49109243 AACTATTTAA
** *
49109253 ATAATATTATTTGAATATTT
1 ATAATATTAAATGAATAATT
49109273 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
49109293 AT
1 AT
49109295 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:49116406 original size:38 final size:38
Alignment explanation
Indices: 49116351--49116428 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
49116341 GAAAAACAAA
*
49116351 AAGATTAACAGACGAAACAAAAACAAAGCAAAAGTTTG
1 AAGATTAACAAACGAAACAAAAACAAAGCAAAAGTTTG
*
49116389 AAGATTAACAAATGAAACAAAAACAAAGCAAAAGTTTG
1 AAGATTAACAAACGAAACAAAAACAAAGCAAAAGTTTG
49116427 AA
1 AA
49116429 TCACCTCTCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.60, C:0.12, G:0.14, T:0.14
Consensus pattern (38 bp):
AAGATTAACAAACGAAACAAAAACAAAGCAAAAGTTTG
Found at i:49123061 original size:26 final size:26
Alignment explanation
Indices: 49123032--49123100 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
49123022 AAGAGTGCGT
*
49123032 CACAAAGTCTTTCTTTCATATTACAC
1 CACAAAGGCTTTCTTTCATATTACAC
**
49123058 CACAAAGGCTTTCTTTCATATTATTC
1 CACAAAGGCTTTCTTTCATATTACAC
*
49123084 GACAAAGGCTTTCTTTC
1 CACAAAGGCTTTCTTTC
49123101 CTAATGTGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.39
Consensus pattern (26 bp):
CACAAAGGCTTTCTTTCATATTACAC
Found at i:49126796 original size:14 final size:14
Alignment explanation
Indices: 49126774--49126806 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
49126764 AAAGTAGGAT
*
49126774 TTATAAATACAACC
1 TTATTAATACAACC
49126788 TTATTAATACAACC
1 TTATTAATACAACC
49126802 TTATT
1 TTATT
49126807 TTTGTTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (14 bp):
TTATTAATACAACC
Found at i:49152339 original size:17 final size:18
Alignment explanation
Indices: 49152307--49152340 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49152297 AAAAAAAGAA
*
49152307 TTCTATCCTCATTTTTTT
1 TTCTATACTCATTTTTTT
49152325 TTCTATACT-ATTTTTT
1 TTCTATACTCATTTTTT
49152341 GGTAGAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (18 bp):
TTCTATACTCATTTTTTT
Found at i:49152740 original size:18 final size:17
Alignment explanation
Indices: 49152709--49152743 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
49152699 GGTTTAGGGT
49152709 TTAAATTTTTTAATTAA
1 TTAAATTTTTTAATTAA
49152726 TTAAATTTATTTAATTAA
1 TTAAATTT-TTTAATTAA
49152744 AAATCTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAAATTTTTTAATTAA
Found at i:49152880 original size:16 final size:16
Alignment explanation
Indices: 49152859--49152893 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
49152849 GACCACTTCG
49152859 TAACAAAATGATAACA
1 TAACAAAATGATAACA
49152875 TAACAAAATGATAACA
1 TAACAAAATGATAACA
49152891 TAA
1 TAA
49152894 GTGACTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.63, C:0.11, G:0.06, T:0.20
Consensus pattern (16 bp):
TAACAAAATGATAACA
Found at i:49154476 original size:17 final size:18
Alignment explanation
Indices: 49154442--49154476 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
49154432 CATATGGCAT
*
49154442 ACCTGTGTGGGCCTACAC
1 ACCTGTGTGGGCCCACAC
49154460 ACCTGTGT-GGCCCACAC
1 ACCTGTGTGGGCCCACAC
49154477 GCCCTACTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.37, G:0.26, T:0.20
Consensus pattern (18 bp):
ACCTGTGTGGGCCCACAC
Found at i:49155148 original size:6 final size:6
Alignment explanation
Indices: 49155137--49155176 Score: 64
Period size: 6 Copynumber: 6.7 Consensus size: 6
49155127 AAATTTTGGG
49155137 AAAAAT AAAAAT AAAAAT AAAAAT AGAAAAT -AAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT A-AAAAT AAAAAT AAAA
49155177 TCTATTTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.16
6 22 0.69
7 5 0.16
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:49163066 original size:2 final size:2
Alignment explanation
Indices: 49163059--49163084 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
49163049 TGGGGTTAAC
49163059 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
49163085 ATCGAAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:49164979 original size:18 final size:18
Alignment explanation
Indices: 49164952--49165013 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
49164942 CTTATTCAAC
*
49164952 TAAA-ATTTTATTTTTGA
1 TAAATATTTTATATTTGA
49164969 TAAATATTTTATATTTGA
1 TAAATATTTTATATTTGA
* *
49164987 -AATTTATTTGATATTT-A
1 TAA-ATATTTTATATTTGA
49165004 TAAATATTTT
1 TAAATATTTT
49165014 TTATATCCAT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
17 12 0.32
18 25 0.68
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (18 bp):
TAAATATTTTATATTTGA
Found at i:49170916 original size:16 final size:17
Alignment explanation
Indices: 49170883--49170916 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
49170873 TGAAAATCTC
* *
49170883 AGTGGTTTTTGGGAAAA
1 AGTGATTTTTGAGAAAA
49170900 AGTGATTTTTGAGAAAA
1 AGTGATTTTTGAGAAAA
49170917 TTAATTTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (17 bp):
AGTGATTTTTGAGAAAA
Found at i:49178308 original size:98 final size:98
Alignment explanation
Indices: 49178199--49178402 Score: 338
Period size: 98 Copynumber: 2.1 Consensus size: 98
49178189 ATTCAACATT
* * * *
49178199 ATATTATATATTTAACGCAAGTAGATATTCAAGTCTAATAAAAATCATTTTTTAATGTATATCCA
1 ATATTATATATTTAACGCAAATAGATATCCAACTCTAATAAAAATCAATTTTTAATGTATATCCA
49178264 ATACTACTATAAAAATATAAATGTCATAAACTA
66 ATACTACTATAAAAATATAAATGTCATAAACTA
**
49178297 ATATTATATATTTAACGCAAATAGATATCCAACTCTAATAAATCTCAATTTTTAATGTATATCCA
1 ATATTATATATTTAACGCAAATAGATATCCAACTCTAATAAAAATCAATTTTTAATGTATATCCA
*
49178362 ATACTAGTATAAAAATATAAATGTCATAAACTA
66 ATACTACTATAAAAATATAAATGTCATAAACTA
49178395 ATA-TATAT
1 ATATTATAT
49178403 TCAATAATAA
Statistics
Matches: 99, Mismatches: 7, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
97 5 0.05
98 94 0.95
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (98 bp):
ATATTATATATTTAACGCAAATAGATATCCAACTCTAATAAAAATCAATTTTTAATGTATATCCA
ATACTACTATAAAAATATAAATGTCATAAACTA
Found at i:49179419 original size:19 final size:19
Alignment explanation
Indices: 49179382--49179419 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
49179372 AAACATTAAT
*
49179382 AATATTTATAATTATAATA
1 AATATTTATAATTAAAATA
49179401 AATATTTAGT-ATTAAAATA
1 AATATTTA-TAATTAAAATA
49179420 TTAATATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
AATATTTATAATTAAAATA
Found at i:49181768 original size:16 final size:16
Alignment explanation
Indices: 49181731--49181767 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
49181721 GAATTTTAAA
*
49181731 TTTTTTGGGTTTGTAT
1 TTTTTTAGGTTTGTAT
49181747 TTTTTTAGGTTTG-AT
1 TTTTTTAGGTTTGTAT
49181762 TTTTTT
1 TTTTTT
49181768 TTTATTTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.08, C:0.00, G:0.19, T:0.73
Consensus pattern (16 bp):
TTTTTTAGGTTTGTAT
Found at i:49182353 original size:13 final size:14
Alignment explanation
Indices: 49182335--49182368 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
49182325 CATTATTTTA
49182335 TTTTTAAAAAA-AG
1 TTTTTAAAAAATAG
*
49182348 TTTTTAAAAAATTG
1 TTTTTAAAAAATAG
49182362 TTTTTAA
1 TTTTTAA
49182369 GTGAGTGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
TTTTTAAAAAATAG
Found at i:49187579 original size:62 final size:62
Alignment explanation
Indices: 49187482--49187606 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
49187472 TTGGCATTAA
* * *
49187482 TAGGTCACCAACCACATCTGTGGCCTCTCGTTGCTAGGTAAAAATAAAATACAATTTTAGCT
1 TAGGTCACCAACCACATCTGTGGCCACTCGTTGCTAAGAAAAAATAAAATACAATTTTAGCT
49187544 TAGGTCACCAACCACATCTGTGGCCACTCGTTGCTAAGAAAAAATAAAATACAATTTTAGCT
1 TAGGTCACCAACCACATCTGTGGCCACTCGTTGCTAAGAAAAAATAAAATACAATTTTAGCT
49187606 T
1 T
49187607 GCCACACTCC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.28
Consensus pattern (62 bp):
TAGGTCACCAACCACATCTGTGGCCACTCGTTGCTAAGAAAAAATAAAATACAATTTTAGCT
Found at i:49195143 original size:6 final size:6
Alignment explanation
Indices: 49195134--49195162 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
49195124 AAATAAAATT
49195134 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
1 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
49195163 GTCTAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
CTAAAA
Found at i:49195266 original size:9 final size:9
Alignment explanation
Indices: 49195252--49195278 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
49195242 ACATATAATT
49195252 TTCGGTTAA
1 TTCGGTTAA
49195261 TTCGGTTAA
1 TTCGGTTAA
49195270 TTCGGTTAA
1 TTCGGTTAA
49195279 CTGACCGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (9 bp):
TTCGGTTAA
Found at i:49196986 original size:25 final size:24
Alignment explanation
Indices: 49196947--49196997 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
49196937 TTGAAAAATA
**
49196947 AATATTTTTTATTTTTTAAATTTT
1 AATATTTTTTATTTTACAAATTTT
*
49196971 AATATTTTTATCTTTTACAAATTTT
1 AATATTTTT-TATTTTACAAATTTT
49196996 AA
1 AA
49196998 AAATAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (24 bp):
AATATTTTTTATTTTACAAATTTT
Found at i:49197964 original size:10 final size:9
Alignment explanation
Indices: 49197923--49198007 Score: 61
Period size: 9 Copynumber: 9.4 Consensus size: 9
49197913 TTTTTCATAA
49197923 AAAAATATT
1 AAAAATATT
49197932 AAAAATCA-T
1 AAAAAT-ATT
*
49197941 AAATATATAT
1 AAAAATAT-T
*
49197951 AAAATTATT
1 AAAAATATT
49197960 AAAAATATTT
1 AAAAATA-TT
49197970 AAAAA-ATT
1 AAAAATATT
*
49197978 AAAGAT-TAT
1 AAAAATAT-T
*
49197987 AAAAA-AAT
1 AAAAATATT
*
49197995 AAAACTATT
1 AAAAATATT
49198004 AAAA
1 AAAA
49198008 TTTATACAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
8 13 0.22
9 31 0.53
10 15 0.25
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (9 bp):
AAAAATATT
Found at i:49197980 original size:18 final size:18
Alignment explanation
Indices: 49197957--49198007 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 18
49197947 ATATAAAATT
49197957 ATTAAAAATATTTAAAAA
1 ATTAAAAATATTTAAAAA
* *
49197975 ATTAAAGAT-TATAAAAA
1 ATTAAAAATATTTAAAAA
* *
49197992 AATAAAACTA-TTAAAA
1 ATTAAAAATATTTAAAA
49198008 TTTATACAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
ATTAAAAATATTTAAAAA
Found at i:49198045 original size:19 final size:19
Alignment explanation
Indices: 49197923--49198045 Score: 57
Period size: 19 Copynumber: 6.7 Consensus size: 19
49197913 TTTTTCATAA
* *
49197923 AAAAATATTAAAA-ATCAT
1 AAAAATATAAAAATATTAT
*
49197941 AAATATATATAAAATTATTA-
1 AAA-A-ATATAAAAATATTAT
*
49197961 AAAATATTTAAAAA-ATTA-
1 AAAA-ATATAAAAATATTAT
* *
49197979 AAGATTATAAAAA-A--AT
1 AAAAATATAAAAATATTAT
* *
49197995 AAAACTATTAAAAT-TTAT
1 AAAAATATAAAAATATTAT
* *
49198013 ACAAACT-TATAAATATTAT
1 A-AAAATATAAAAATATTAT
49198032 AAAAATATAAAAAT
1 AAAAATATAAAAAT
49198046 TCTAATGAAT
Statistics
Matches: 80, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
15 1 0.01
16 10 0.12
17 8 0.10
18 22 0.28
19 26 0.32
20 10 0.12
21 3 0.04
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (19 bp):
AAAAATATAAAAATATTAT
Found at i:49198262 original size:17 final size:19
Alignment explanation
Indices: 49198224--49198267 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
49198214 TAAAAATCAT
49198224 AAAATATAATAACTTATAA
1 AAAATATAATAACTTATAA
49198243 AAAATATAA-AA-TTAATAA
1 AAAATATAATAACTT-ATAA
49198261 AAAATAT
1 AAAATAT
49198268 TTAAAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.08
18 13 0.54
19 9 0.38
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATATAATAACTTATAA
Found at i:49202202 original size:5 final size:5
Alignment explanation
Indices: 49202194--49202232 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
49202184 AACTCACATT
*
49202194 GATTT GATTG GATTG GATTG GATTG GATTG GATTG GATT
1 GATTG GATTG GATTG GATTG GATTG GATTG GATTG GATT
49202233 CAATTTTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.44
Consensus pattern (5 bp):
GATTG
Found at i:49204477 original size:3 final size:3
Alignment explanation
Indices: 49204469--49204517 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
49204459 ATATGTGAGT
* * *
49204469 ATA ATA ATA ATA ATA ATA ATA A-A GATA ACA ATT ATA ATA ATT ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
49204514 ATA A
1 ATA A
49204518 CTATATTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
2 1 0.03
3 36 0.95
4 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:49205585 original size:50 final size:48
Alignment explanation
Indices: 49205521--49205692 Score: 157
Period size: 50 Copynumber: 3.5 Consensus size: 48
49205511 TAAGGAGGTA
* * *
49205521 AGATCTGCCATTGTGGCTTCAATCGTTTTAATTGCGCTGTCGGGGAAACC
1 AGATCTGCCGTTGTGACTTCAATC--TTTAAATGCGCTGTCGGGGAAACC
* * ** * * * * * ***
49205571 AGATCCGTCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCTGCCGTTGTGACTTCAATCT--TTAAATGCGCTGTCGGGGAAACC
*
49205621 AGATCTGCCGTTGTGGCTTCAATC-TTAAATGCGCTGTCGGGGAAACC
1 AGATCTGCCGTTGTGACTTCAATCTTTAAATGCGCTGTCGGGGAAACC
49205668 AGATCTGCCGTTGTGACTTCAATCT
1 AGATCTGCCGTTGTGACTTCAATCT
49205693 GCTCCACTGC
Statistics
Matches: 91, Mismatches: 28, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
47 36 0.40
48 1 0.01
50 54 0.59
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (48 bp):
AGATCTGCCGTTGTGACTTCAATCTTTAAATGCGCTGTCGGGGAAACC
Found at i:49205695 original size:97 final size:97
Alignment explanation
Indices: 49205458--49205743 Score: 362
Period size: 97 Copynumber: 2.9 Consensus size: 97
49205448 CTAATTACAA
* * * * * ** * * *
49205458 TGTCGAGGAAACAAGATCCGCCGTCGT-AGCTTCAATCTGTTCAACTGCACTACTAAGGAGGTAA
1 TGTCGGGGAAACCAGATCCGCCGTTGTGA-CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAA
* *
49205522 GATCTGCCATTGTGGCTTCAATCGTTTTAATTGCGC
65 GATCTGCCGTTGTGGCTTCAATC---TTAAATGCGC
*
49205558 TGTCGGGGAAACCAGATCCGTCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
49205623 ATCTGCCGTTGTGGCTTCAATCTTAAATGCGC
66 ATCTGCCGTTGTGGCTTCAATCTTAAATGCGC
* *
49205655 TGTCGGGGAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGTCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
49205720 AT-T-CATCGTTGTGGCTTCAATCTT
66 ATCTGC--CGTTGTGGCTTCAATCTT
49205744 TTTCACTTAA
Statistics
Matches: 167, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
95 1 0.01
96 1 0.01
97 91 0.54
100 73 0.44
101 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (97 bp):
TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
ATCTGCCGTTGTGGCTTCAATCTTAAATGCGC
Found at i:49205730 original size:50 final size:49
Alignment explanation
Indices: 49205579--49205742 Score: 165
Period size: 50 Copynumber: 3.3 Consensus size: 49
49205569 CCAGATCCGT
*
49205579 CGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCTGC
1 CGTTGTGACTTCAATCTGCTCCACTGCACCGTCAGGGAAGTAAGATCT-C
* * * * * * ***
49205629 CGTTGTGGCTTCAATCT--T-AAATGCGCTGTCGGGGAAACCAGATCTGC
1 CGTTGTGACTTCAATCTGCTCCACTGCACCGTCAGGGAAGTAAGATCT-C
49205676 CGTTGTGACTTCAATCTGCTCCACTGCACCGTCAGGGAAGTAAGAT-TC
1 CGTTGTGACTTCAATCTGCTCCACTGCACCGTCAGGGAAGTAAGATCTC
*
49205724 ATCGTTGTGGCTTCAATCT
1 --CGTTGTGACTTCAATCT
49205743 TTTTCACTTA
Statistics
Matches: 89, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
47 36 0.40
48 2 0.02
49 2 0.02
50 49 0.55
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.28
Consensus pattern (49 bp):
CGTTGTGACTTCAATCTGCTCCACTGCACCGTCAGGGAAGTAAGATCTC
Found at i:49205894 original size:50 final size:50
Alignment explanation
Indices: 49205835--49205958 Score: 176
Period size: 50 Copynumber: 2.5 Consensus size: 50
49205825 AGGGAGATAT
* * * * *
49205835 GATCCGCCATTGTAGCTTCAATCTGCTCCGCTGTGACGCTAGGAAAATAA
1 GATCCGCCATTGTGGCTTCAATCTGCTCCGATGCGACGCCAGAAAAATAA
*
49205885 GATCCGCCATTGTGGCTTCAATATGCTCCGATGCGACGCCAGAAAAATAA
1 GATCCGCCATTGTGGCTTCAATCTGCTCCGATGCGACGCCAGAAAAATAA
* *
49205935 GATCCACCATTATGGCTTCAATCT
1 GATCCGCCATTGTGGCTTCAATCT
49205959 TTTTAATTGC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 65 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (50 bp):
GATCCGCCATTGTGGCTTCAATCTGCTCCGATGCGACGCCAGAAAAATAA
Found at i:49206484 original size:88 final size:88
Alignment explanation
Indices: 49205993--49206471 Score: 764
Period size: 88 Copynumber: 5.4 Consensus size: 88
49205983 AAGACTAATG
* * * * *
49205993 TCTTCGATCTGCTTCGCTGCCAGTACAAGAAGGCAAGATCTGTCATTTTCGACCTACTCCACTGC
1 TCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTCCACTAC
* *
49206058 TGCCGAGGGAAACAAGGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
* * *
49206081 TCTTCGATCTGCTTCTCTGTCAGTACAAGAAGGCAAGATCTG-CTATTTTCAACCTACTCCACTA
1 TCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTC-ATTTTCAACCTACTCCACTA
*
49206145 CTGCCCAGGGAGACAAAGCTGGTA
65 CTGCCCAGGGAGACAAGGCTGGTA
* * *
49206169 TCTTCGATCTACTTCTCTGTCAGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTCCACTAC
1 TCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTCCACTAC
49206234 TGCCCAGGGAGACAAGGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
49206257 TCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTCCACTAC
1 TCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTCCACTAC
*
49206322 TGCCCAGGGAGACAAAGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
*
49206345 TCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTCATTTTCAGCCTACTCCACTAC
1 TCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTCCACTAC
49206410 TGCCCAGGGAGACAAGGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
* *
49206433 -CTTTTGATCTGCTTCTCTGTCATTACAGGAAGGCAAGAT
1 TC-TTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGAT
49206472 TTGCTATCTT
Statistics
Matches: 370, Mismatches: 18, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
87 2 0.01
88 367 0.99
89 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (88 bp):
TCTTTGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTCCACTAC
TGCCCAGGGAGACAAGGCTGGTA
Found at i:49207793 original size:17 final size:18
Alignment explanation
Indices: 49207771--49207804 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
49207761 CCTTAGCCTC
49207771 TCCATTTTT-ATTTTTTT
1 TCCATTTTTCATTTTTTT
49207788 TCCATTTTTCATTTTTT
1 TCCATTTTTCATTTTTT
49207805 ATTTTCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.74
Consensus pattern (18 bp):
TCCATTTTTCATTTTTTT
Found at i:49207811 original size:13 final size:13
Alignment explanation
Indices: 49207793--49207817 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49207783 TTTTTTCCAT
49207793 TTTTCATTTTTTA
1 TTTTCATTTTTTA
49207806 TTTTCATTTTTT
1 TTTTCATTTTTT
49207818 CACATCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCATTTTTTA
Found at i:49208360 original size:11 final size:11
Alignment explanation
Indices: 49208312--49208392 Score: 56
Period size: 11 Copynumber: 7.1 Consensus size: 11
49208302 CCCCAGCGGG
*
49208312 GTTTTTTTTCT
1 GTTTTTTTTTT
*
49208323 GTTTTTTTCTT
1 GTTTTTTTTTT
* **
49208334 CTTTTTTTTCC
1 GTTTTTTTTTT
*
49208345 CTTTTTTGTTTT
1 GTTTTTT-TTTT
49208357 -TTTTTATGTTTT
1 GTTTTT-T-TTTT
*
49208369 GTTTTTATTTT
1 GTTTTTTTTTT
49208380 GTTTTCTTTTTT
1 GTTTT-TTTTTT
49208392 G
1 G
49208393 ATTGAATCTG
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
11 37 0.66
12 14 0.25
13 5 0.09
ACGTcount: A:0.02, C:0.09, G:0.09, T:0.80
Consensus pattern (11 bp):
GTTTTTTTTTT
Found at i:49208368 original size:17 final size:16
Alignment explanation
Indices: 49208348--49208391 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
49208338 TTTTTCCCTT
49208348 TTTTGTTTTTTTTTATG
1 TTTTGTTTTTTTTT-TG
*
49208365 TTTTGTTTTTATTTTG
1 TTTTGTTTTTTTTTTG
*
49208381 TTTTCTTTTTT
1 TTTTGTTTTTT
49208392 GATTGAATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 11 0.46
17 13 0.54
ACGTcount: A:0.05, C:0.02, G:0.09, T:0.84
Consensus pattern (16 bp):
TTTTGTTTTTTTTTTG
Found at i:49208392 original size:12 final size:11
Alignment explanation
Indices: 49208313--49208391 Score: 52
Period size: 12 Copynumber: 6.7 Consensus size: 11
49208303 CCCAGCGGGG
49208313 TTTTTTTTCTGT
1 TTTTTTTTCT-T
49208325 TTTTTTCTTCTT
1 TTTTTT-TTCTT
**
49208337 TTTTTTCCCTT
1 TTTTTTTTCTT
49208348 TTTTGTTTT-TT
1 TTTT-TTTTCTT
*
49208359 TTTATGTTTTGTT
1 TTT-T-TTTTCTT
* *
49208372 TTTATTTTGTT
1 TTTTTTTTCTT
49208383 TTCTTTTTT
1 TT-TTTTTT
49208392 GATTGAATCT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
11 21 0.38
12 26 0.46
13 9 0.16
ACGTcount: A:0.03, C:0.09, G:0.06, T:0.82
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:49209191 original size:15 final size:15
Alignment explanation
Indices: 49209171--49209201 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
49209161 AGAATGAAAG
49209171 AATAATTATTCAAAA
1 AATAATTATTCAAAA
49209186 AATAATTATTCAAAA
1 AATAATTATTCAAAA
49209201 A
1 A
49209202 GACCGAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (15 bp):
AATAATTATTCAAAA
Found at i:49214350 original size:21 final size:21
Alignment explanation
Indices: 49214326--49214366 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
49214316 TTGAATAGTG
49214326 AATGTATATATATTATAAAAA
1 AATGTATATATATTATAAAAA
49214347 AATGTATATATATTATAAAA
1 AATGTATATATATTATAAAA
49214367 CAGAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (21 bp):
AATGTATATATATTATAAAAA
Found at i:49214516 original size:3 final size:3
Alignment explanation
Indices: 49214508--49214559 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
49214498 ATATGTGAGT
* * *
49214508 ATA ATA ATA ATA ATA ATA ATA ATA A-A GATA ACA ATT ATA ATA ATT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
49214553 ATA ATA A
1 ATA ATA A
49214560 CTATATTAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 1 0.02
3 39 0.95
4 1 0.02
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:49216544 original size:15 final size:15
Alignment explanation
Indices: 49216521--49216554 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
49216511 TTAAGATTTA
*
49216521 AATATATATAAAAAT
1 AATAGATATAAAAAT
49216536 AATAGATATAAAAAT
1 AATAGATATAAAAAT
49216551 AATA
1 AATA
49216555 TTAACAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (15 bp):
AATAGATATAAAAAT
Found at i:49217177 original size:22 final size:22
Alignment explanation
Indices: 49217149--49217199 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
49217139 CACCGCGGTG
49217149 GCCGCCGACCGCCGGCGACGGC
1 GCCGCCGACCGCCGGCGACGGC
* *
49217171 GCTGCCGATCGCCGGCGACGGC
1 GCCGCCGACCGCCGGCGACGGC
49217193 GCCGCCG
1 GCCGCCG
49217200 CTGCTTGCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.08, C:0.47, G:0.41, T:0.04
Consensus pattern (22 bp):
GCCGCCGACCGCCGGCGACGGC
Found at i:49217375 original size:13 final size:13
Alignment explanation
Indices: 49217341--49217380 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
49217331 TATTTTCGTT
**
49217341 TAAAAAATGTAAA
1 TAAAAAATAAAAA
49217354 TAAATAAATAAAAA
1 TAAA-AAATAAAAA
49217368 TAAAAAATAAAAA
1 TAAAAAATAAAAA
49217381 CGACACTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.20
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:49217829 original size:19 final size:21
Alignment explanation
Indices: 49217795--49217837 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
49217785 TTTTTTAATT
49217795 TTTGGGCTGATATTATTTG-A
1 TTTGGGCTGATATTATTTGTA
*
49217815 TTTGGGTTG-TATTATTTGTA
1 TTTGGGCTGATATTATTTGTA
49217835 TTT
1 TTT
49217838 TTATATTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.16, C:0.02, G:0.23, T:0.58
Consensus pattern (21 bp):
TTTGGGCTGATATTATTTGTA
Found at i:49218210 original size:46 final size:46
Alignment explanation
Indices: 49218160--49218454 Score: 295
Period size: 46 Copynumber: 6.2 Consensus size: 46
49218150 TGTGATTTAT
* * * *
49218160 AGCTTTAATCTACTGCGATGCCAGGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCGTTGCCTTC
* *
49218206 AGCTTTAATCTGTCCCACTACAACGCCAAGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATC--T---ACTGCAACGCCAAGGAAATAAGATTCGTTGCCTTC
* *
49218257 AGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGTTGCCTTC
1 AGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCGTTGCCTTC
* * *
49218303 AGCTTTAATCTGTTCCATTGCAACGCCAAGGAAATGAGATTTGTTGCCTTC
1 AGCTTTAATC---T--ACTGCAACGCCAAGGAAATAAGATTCGTTGCCTTC
* * *
49218354 AGCTTTAATCTACTGCGACGCC-AGAGAAATAAGATTCGTAGCGTTC
1 AGCTTTAATCTACTGCAACGCCAAG-GAAATAAGATTCGTTGCCTTC
* * * * * * *
49218400 AGCTTTAATCTATTACAATGTCAAGGAAACAAGATCCGTTCCCTTC
1 AGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCGTTGCCTTC
49218446 AGCTTTAAT
1 AGCTTTAAT
49218455 TTGTTCCACT
Statistics
Matches: 208, Mismatches: 29, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
45 2 0.01
46 119 0.57
47 2 0.01
48 2 0.01
49 2 0.01
51 81 0.39
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (46 bp):
AGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCGTTGCCTTC
Found at i:49218244 original size:97 final size:95
Alignment explanation
Indices: 49218160--49218410 Score: 385
Period size: 97 Copynumber: 2.6 Consensus size: 95
49218150 TGTGATTTAT
*
49218160 AGCTTTAATCTACTGCGATGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTCCCACT
1 AGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCG-TGCCTTCAGCTTTAATCTGTCCCACT
49218225 ACAACGCCAAGGAAATAAGATTCGCTGCCTTC
65 ACAACGCCAAGGAAATAAGATT-GCTGCCTTC
* *
49218257 AGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGTTGCCTTCAGCTTTAATCTGTTCCATT
1 AGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCG-TGCCTTCAGCTTTAATCTGTCCCACT
* * *
49218322 GCAACGCCAAGGAAATGAGATTTGTTGCCTTC
65 ACAACGCCAAGGAAATAAGA-TTGCTGCCTTC
* *
49218354 AGCTTTAATCTACTGCGACGCCAGAGAAATAAGATTCGTAGCGTTCAGCTTTAATCT
1 AGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGT-GCCTTCAGCTTTAATCT
49218411 ATTACAATGT
Statistics
Matches: 143, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
96 1 0.01
97 140 0.98
98 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (95 bp):
AGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGTGCCTTCAGCTTTAATCTGTCCCACTA
CAACGCCAAGGAAATAAGATTGCTGCCTTC
Found at i:49218466 original size:97 final size:94
Alignment explanation
Indices: 49218160--49218454 Score: 317
Period size: 97 Copynumber: 3.1 Consensus size: 94
49218150 TGTGATTTAT
* * * *
49218160 AGCTTTAATCTACTGCGATGCCAGGGAAATAAGATTCGCT-GCCTTCAGCTTTAATCTGTCCCAC
1 AGCTTTAATCCACTGCGACGCCAGAGAAATAAGATTCG-TAGCCTTCAGCTTTAATCT-T--CAT
* * * *
49218224 TACAACGCCAAGGAAATAAGATTCGCTGCCTTC
62 TACAACGCCAAGGAAACAAGATCCGTTCCCTTC
* * *
49218257 AGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGTTGCCTTCAGCTTTAATCTGTTCCATT
1 AGCTTTAATCCACTGCGACGCCAGAGAAATAAGATTCGTAGCCTTCAGCTTTAATC--TT-CATT
* ** ** *
49218322 GCAACGCCAAGGAAATGAGATTTGTTGCCTTC
63 ACAACGCCAAGGAAACAAGATCCGTTCCCTTC
* *
49218354 AGCTTTAATCTACTGCGACGCCAGAGAAATAAGATTCGTAGCGTTCAGCTTTAATC-T-ATTACA
1 AGCTTTAATCCACTGCGACGCCAGAGAAATAAGATTCGTAGCCTTCAGCTTTAATCTTCATTACA
* *
49218417 ATGTCAAGGAAACAAGATCCGTTCCCTTC
66 ACGCCAAGGAAACAAGATCCGTTCCCTTC
49218446 AGCTTTAAT
1 AGCTTTAAT
49218455 TTGTTCCACT
Statistics
Matches: 178, Mismatches: 17, Indels: 11
0.86 0.08 0.05
Matches are distributed among these distances:
92 36 0.20
94 1 0.01
96 1 0.01
97 138 0.78
98 1 0.01
99 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (94 bp):
AGCTTTAATCCACTGCGACGCCAGAGAAATAAGATTCGTAGCCTTCAGCTTTAATCTTCATTACA
ACGCCAAGGAAACAAGATCCGTTCCCTTC
Found at i:49229790 original size:22 final size:22
Alignment explanation
Indices: 49229765--49229806 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
49229755 AGGCAAATAA
49229765 ATTAATAATGG-AATAAAACAAT
1 ATTAATAATGGCAA-AAAACAAT
49229787 ATTAATAATGGCAAAAAACA
1 ATTAATAATGGCAAAAAACA
49229807 TAAATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.60, C:0.07, G:0.10, T:0.24
Consensus pattern (22 bp):
ATTAATAATGGCAAAAAACAAT
Found at i:49230636 original size:19 final size:21
Alignment explanation
Indices: 49230602--49230644 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
49230592 TTTTTTTATT
49230602 TTTGGACTGATATTATTTG-A
1 TTTGGACTGATATTATTTGTA
*
49230622 TTTGGGCTG-TATTATTTGTA
1 TTTGGACTGATATTATTTGTA
49230642 TTT
1 TTT
49230645 TTATATTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.19, C:0.05, G:0.21, T:0.56
Consensus pattern (21 bp):
TTTGGACTGATATTATTTGTA
Found at i:49232790 original size:21 final size:20
Alignment explanation
Indices: 49232766--49232813 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
49232756 CAATGCCGCA
*
49232766 ACATTGGCTTCGAATGTCATG
1 ACATTGGCTT-GAATGTCACG
*
49232787 ACATTGACTTGAATGTCACG
1 ACATTGGCTTGAATGTCACG
*
49232807 ATATTGG
1 ACATTGG
49232814 AGACAAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (20 bp):
ACATTGGCTTGAATGTCACG
Found at i:49232802 original size:20 final size:21
Alignment explanation
Indices: 49232766--49232804 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
49232756 CAATGCCGCA
*
49232766 ACATTGGCTTCGAATGTCATG
1 ACATTGACTTCGAATGTCATG
49232787 ACATTGACTT-GAATGTCA
1 ACATTGACTTCGAATGTCA
49232805 CGATATTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (21 bp):
ACATTGACTTCGAATGTCATG
Found at i:49236701 original size:43 final size:43
Alignment explanation
Indices: 49236655--49236851 Score: 249
Period size: 43 Copynumber: 4.6 Consensus size: 43
49236645 CAATGTCATA
* * * ** *
49236655 TCCCAGATATGGTCTTACATGTTATCATATATCGATGCCTCTA
1 TCCCAGACATGGTCTTACACGTAATCATATATCGATGCCAATG
*
49236698 TCCCAGACAGGGTCTTACACG-AATCATATA-C-AGTGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCATATATCGA-TGCCAATG
* *
49236739 TCCCAGACATGGTCTTACACGTAATCTTATATTGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCATATATCGATGCCAATG
*
49236782 TCCCAGACATGGTCTTACACGTAATC-TCATATTGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCAT-ATATCGATGCCAATG
*
49236825 TCCCAGACATGGTCTTACACGAAATCA
1 TCCCAGACATGGTCTTACACGTAATCA
49236852 CAACTCGAAA
Statistics
Matches: 137, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
40 1 0.01
41 26 0.19
42 17 0.12
43 92 0.67
44 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCATATATCGATGCCAATG
Found at i:49236796 original size:84 final size:86
Alignment explanation
Indices: 49236655--49236851 Score: 256
Period size: 84 Copynumber: 2.3 Consensus size: 86
49236645 CAATGTCATA
* * * **
49236655 TCCCAGATATGGTCTTACATGTTATCATATATCGATGCCTCTATCCCAGACAGGGTCTTACACG-
1 TCCCAGACATGGTCTTACACGTAATCATATATCGATGCCAATATCCCAGACAGGGTCTTACACGT
49236719 AATCAT-ATACAG-TGCCAATG
66 AATC-TCATACAGATGCCAATG
* * * *
49236739 TCCCAGACATGGTCTTACACGTAATCTTATATTGATGCCAATGTCCCAGACATGGTCTTACACGT
1 TCCCAGACATGGTCTTACACGTAATCATATATCGATGCCAATATCCCAGACAGGGTCTTACACGT
**
49236804 AATCTCATATTGATGCCAATG
66 AATCTCATACAGATGCCAATG
*
49236825 TCCCAGACATGGTCTTACACGAAATCA
1 TCCCAGACATGGTCTTACACGTAATCA
49236852 CAACTCGAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
84 56 0.58
85 8 0.08
86 33 0.34
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (86 bp):
TCCCAGACATGGTCTTACACGTAATCATATATCGATGCCAATATCCCAGACAGGGTCTTACACGT
AATCTCATACAGATGCCAATG
Found at i:49237288 original size:68 final size:68
Alignment explanation
Indices: 49237196--49237544 Score: 491
Period size: 68 Copynumber: 5.1 Consensus size: 68
49237186 AAATCAATAG
* * * * * * * * * *
49237196 ATTCGAACAGCTACATTTATTAAATAAAACAGCATAAATGGTAGTGCATTGAACAGTGATTTTAA
1 ATTCGGACAACTACATTTACTAAATAAAATAGCATAAATGATGGTGCTTTGATCAGTGAATCTAA
49237261 CAC
66 CAC
* * * * * * *
49237264 ATTCAGACAACTATATTTACTAAATAAAATAGCATAAATGATAGTGCATTGAACAATGAATTTAA
1 ATTCGGACAACTACATTTACTAAATAAAATAGCATAAATGATGGTGCTTTGATCAGTGAATCTAA
49237329 CAC
66 CAC
* * *
49237332 ATTCGGACAGCTACATTTACTAAATAAAACACCATAAATGATGGTGCTTTGATCAGTGAATCTAA
1 ATTCGGACAACTACATTTACTAAATAAAATAGCATAAATGATGGTGCTTTGATCAGTGAATCTAA
49237397 CAC
66 CAC
* *
49237400 ATTCAGAAAACTACATTTACTAAATAAAATAGCATAAATGATGGTGCTTTGATCAGTGAATCTAA
1 ATTCGGACAACTACATTTACTAAATAAAATAGCATAAATGATGGTGCTTTGATCAGTGAATCTAA
49237465 CAC
66 CAC
*
49237468 ATTTGGACAACTACATTTACTAAATAAAATAGCATAAATGATGGTGCTTTGATCAGTGAATCTAA
1 ATTCGGACAACTACATTTACTAAATAAAATAGCATAAATGATGGTGCTTTGATCAGTGAATCTAA
49237533 CAC
66 CAC
49237536 ATTCGGACA
1 ATTCGGACA
49237545 GCTTAATTTT
Statistics
Matches: 253, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 253 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (68 bp):
ATTCGGACAACTACATTTACTAAATAAAATAGCATAAATGATGGTGCTTTGATCAGTGAATCTAA
CAC
Found at i:49250422 original size:19 final size:20
Alignment explanation
Indices: 49250390--49250427 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
49250380 ATTTCATAGC
* *
49250390 TAAAAGCAAGGAAA-AAGAA
1 TAAAAACAAAGAAAGAAGAA
49250409 TAAAAACAAAGAAAGAAGA
1 TAAAAACAAAGAAAGAAGA
49250428 CAAATTCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.71, C:0.05, G:0.18, T:0.05
Consensus pattern (20 bp):
TAAAAACAAAGAAAGAAGAA
Done.