Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 165 of 189
Found at i:49423080 original size:13 final size:14
Alignment explanation
Indices: 49423062--49423090 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
49423052 ATAATATAAC
49423062 TATATTTAAT-ATT
1 TATATTTAATAATT
49423075 TATATTTAATAATT
1 TATATTTAATAATT
49423089 TA
1 TA
49423091 GTAAATGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATATTTAATAATT
Found at i:49424884 original size:25 final size:24
Alignment explanation
Indices: 49424843--49424935 Score: 80
Period size: 25 Copynumber: 3.6 Consensus size: 24
49424833 CATAAAAAAT
* *
49424843 TAAATTTTTTTTAAATAATTAATA
1 TAAATTATTTTAAAATAATTAATA
49424867 TAAATTACTTTTAAAATAATTAACATA
1 TAAATTA-TTTTAAAATAATT-A-ATA
* *
49424894 AAAATTAAATATTTTTAAATAATTAATA
1 TAAA-T---TATTTTAAAATAATTAATA
49424922 TAAA-TATTTTAAAA
1 TAAATTATTTTAAAA
49424936 ATCATATTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
23 9 0.16
24 6 0.11
25 12 0.21
26 1 0.02
27 6 0.11
28 7 0.12
29 1 0.02
30 12 0.21
31 2 0.04
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
TAAATTATTTTAAAATAATTAATA
Found at i:49424898 original size:131 final size:129
Alignment explanation
Indices: 49424657--49424900 Score: 330
Period size: 131 Copynumber: 1.9 Consensus size: 129
49424647 GTAAGTAATG
*
49424657 GATTAATTTAAATGATATTTGAAAAAATAATATAGTGGAACATAACATAAAATAATTAAATACTT
1 GATTAATTTAAATAATATTTGAAAAAATAATATAGTGGAACATAACATAAAATAATTAAATACTT
* * *
49424722 TTAAATAATTGATATAAATTACTTTTTAAATTTTAAATATCAAAATTATATTTTACTAAAGTGTC
66 TTAAATAATTAATATAAATTACTTTTAAAATATTAAATA-CAAAATTATATTTTACTAAAGTGTC
* * * ** **
49424787 GATTAATTTAAATAATATTTTAAAAAGTTAATATATTGGTGCATAACATAAAA-AATTAAATTTT
1 GATTAATTTAAATAATATTTGAAAAA-ATAATATAGTGGAACATAACATAAAATAATTAAA-TAC
49424851 TTTTAAATAATTAATATAAATTACTTTTAAAATAATTAACATA-AAAATTA
64 TTTTAAATAATTAATATAAATTACTTTTAAAAT-ATTAA-ATACAAAATTA
49424901 AATATTTTTA
Statistics
Matches: 99, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
130 31 0.31
131 61 0.62
132 4 0.04
133 3 0.03
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.41
Consensus pattern (129 bp):
GATTAATTTAAATAATATTTGAAAAAATAATATAGTGGAACATAACATAAAATAATTAAATACTT
TTAAATAATTAATATAAATTACTTTTAAAATATTAAATACAAAATTATATTTTACTAAAGTGTC
Found at i:49424920 original size:55 final size:55
Alignment explanation
Indices: 49424830--49424935 Score: 171
Period size: 55 Copynumber: 1.9 Consensus size: 55
49424820 TATTGGTGCA
*
49424830 TAACATAAAAAATTAAATTTTTTTTAAATAATTAATATAAATTACTTTTAAAATAAT
1 TAACATAAAAAATTAAATTATTTTTAAATAATTAATATAAA-TA-TTTTAAAATAAT
49424887 TAACAT-AAAAATTAAA-TATTTTTAAATAATTAATATAAATATTTTAAAA
1 TAACATAAAAAATTAAATTATTTTTAAATAATTAATATAAATATTTTAAAA
49424936 ATCATATTTT
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
53 8 0.17
54 2 0.04
55 22 0.46
56 10 0.21
57 6 0.12
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (55 bp):
TAACATAAAAAATTAAATTATTTTTAAATAATTAATATAAATATTTTAAAATAAT
Found at i:49433728 original size:24 final size:25
Alignment explanation
Indices: 49433678--49433728 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
49433668 ATTTTTAGAA
*
49433678 AAATTAATTTTGATCAAGTAAAATT
1 AAATTAATTTAGATCAAGTAAAATT
* *
49433703 AAATTAA-TTAGATTAATTAAAATT
1 AAATTAATTTAGATCAAGTAAAATT
49433727 AA
1 AA
49433729 TATGATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (25 bp):
AAATTAATTTAGATCAAGTAAAATT
Found at i:49434161 original size:37 final size:36
Alignment explanation
Indices: 49434120--49434217 Score: 102
Period size: 37 Copynumber: 2.8 Consensus size: 36
49434110 AAATATTATT
*
49434120 TTAATAGTTTAATATTAAATTTAATTTAATAACTATC
1 TTAATAGTTTAATATTAAATTTAATTTAATAAC-ATA
*
49434157 TTAATAGTATT-TTATT-AATTTAATATT-A-AACATA
1 TTAATAGT-TTAATATTAAATTTAAT-TTAATAACATA
49434191 TT-AT-G-TTAATATTAAATTTAATTTAAT
1 TTAATAGTTTAATATTAAATTTAATTTAAT
49434218 GTTTATATTG
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
30 2 0.04
31 6 0.12
32 10 0.19
33 2 0.04
34 4 0.08
35 3 0.06
36 9 0.17
37 14 0.27
38 2 0.04
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (36 bp):
TTAATAGTTTAATATTAAATTTAATTTAATAACATA
Found at i:49434296 original size:62 final size:62
Alignment explanation
Indices: 49434196--49434315 Score: 147
Period size: 62 Copynumber: 1.9 Consensus size: 62
49434186 ACATATTATG
* * *
49434196 TTAATATTAAATTTAATTTAATGTTTATATTGTAGATAATTATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATTTAATGTTTATATTGTAGATAAATATTATATTAATTTAATAAGAT
* *
49434258 TTAATATTAAATTTAATCTT-CTAGTATT-TATT-TTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAAT-TTAAT-GT-TTATATTGTAGATAAATATTATATTAATTTAATA
49434316 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
62 40 0.80
63 8 0.16
64 2 0.04
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (62 bp):
TTAATATTAAATTTAATTTAATGTTTATATTGTAGATAAATATTATATTAATTTAATAAGAT
Found at i:49441556 original size:24 final size:24
Alignment explanation
Indices: 49441524--49441573 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
49441514 TTGAATAAAC
49441524 TTAAATGAAAAGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
* *
49441548 TTAAGTGAAAGGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
49441572 TT
1 TT
49441574 TTTTTTAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (24 bp):
TTAAATGAAAAGTCAAGAGTTATG
Found at i:49446812 original size:25 final size:24
Alignment explanation
Indices: 49446788--49446848 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 24
49446778 AAAAATTATA
49446788 AAATATAAAAATATATATATGTAT
1 AAATATAAAAATATATATATGTAT
* * * *
49446812 ATATAAGAAAAATATATATGTGTGT
1 AAAT-ATAAAAATATATATATGTAT
*
49446837 GAATTATAAAAA
1 -AAATATAAAAA
49446849 AATAAAAAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
24 3 0.11
25 23 0.82
26 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.34
Consensus pattern (24 bp):
AAATATAAAAATATATATATGTAT
Found at i:49446830 original size:23 final size:22
Alignment explanation
Indices: 49446790--49446832 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
49446780 AAATTATAAA
*
49446790 ATATAAAAATATATATATGTAT
1 ATATAAAAAAATATATATGTAT
49446812 ATATAAGAAAAATATATATGT
1 ATATAA-AAAAATATATATGT
49446833 GTGTGAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAT
Found at i:49446969 original size:36 final size:36
Alignment explanation
Indices: 49446929--49447004 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
49446919 TGAAACATAG
*
49446929 AAAATATATAAAAGTATGT-GTATATATATAT-TTATA
1 AAAAT-TA-AAAAATATGTAGTATATATATATATTATA
* *
49446965 AAAATTAAAAAATGTGTACGTATATGTATATATTATA
1 AAAATTAAAAAATATGTA-GTATATATATATATTATA
49447002 AAA
1 AAA
49447005 CGTATGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 8 0.24
35 2 0.06
36 16 0.47
37 8 0.24
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.38
Consensus pattern (36 bp):
AAAATTAAAAAATATGTAGTATATATATATATTATA
Found at i:49447895 original size:24 final size:24
Alignment explanation
Indices: 49447863--49447912 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
49447853 TTGAATAAAC
49447863 TTAAATGAAAAGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
* *
49447887 TTAAGTGAAAGGTCAAGAGTTATG
1 TTAAATGAAAAGTCAAGAGTTATG
49447911 TT
1 TT
49447913 TTTTTAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (24 bp):
TTAAATGAAAAGTCAAGAGTTATG
Found at i:49458053 original size:119 final size:120
Alignment explanation
Indices: 49457877--49458097 Score: 313
Period size: 119 Copynumber: 1.9 Consensus size: 120
49457867 TACTCGTTCA
* * *
49457877 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGAACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGAACTTAGCCCGGAT
*
49457942 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
* * *
49457997 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGAACTTAGCCCGGA
* * *
49458060 TATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
65 TATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCG
49458098 GACATCATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
118 1 0.01
119 68 0.76
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGAACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
Found at i:49458099 original size:40 final size:40
Alignment explanation
Indices: 49457856--49458099 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
49457846 CGGAATTTAA
** *
49457856 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49457896 CCGGTTATAGTAACTCGCACAAATGCCTTCGGAACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49457936 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
49457976 CCGAATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49458015 CCGGA-ATTAGTAACTCACACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
49458055 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
49458095 CCGGA
1 CCGGA
49458100 CATCATTCAA
Statistics
Matches: 175, Mismatches: 22, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 131 0.75
41 11 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:49461181 original size:30 final size:30
Alignment explanation
Indices: 49461147--49461209 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
49461137 GTAAGTGAAC
*
49461147 CATTTGTTTATTTACATGTATTAGTGTATA
1 CATTTGTTTATTTACATGCATTAGTGTATA
49461177 CATTTGTTTATTTACATGCATTAGTGTATA
1 CATTTGTTTATTTACATGCATTAGTGTATA
49461207 CAT
1 CAT
49461210 GTCTATAGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.51
Consensus pattern (30 bp):
CATTTGTTTATTTACATGCATTAGTGTATA
Found at i:49464469 original size:22 final size:22
Alignment explanation
Indices: 49464444--49464485 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
49464434 ACGAGTCTTT
49464444 CTCTTAGTCCCACTAAAAAGTC
1 CTCTTAGTCCCACTAAAAAGTC
*
49464466 CTCTTAGTCCTACTAAAAAG
1 CTCTTAGTCCCACTAAAAAG
49464486 AACGTAGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.29
Consensus pattern (22 bp):
CTCTTAGTCCCACTAAAAAGTC
Found at i:49464919 original size:15 final size:15
Alignment explanation
Indices: 49464899--49464927 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
49464889 GAAGAAGGTG
49464899 CAGATCACCCACATA
1 CAGATCACCCACATA
49464914 CAGATCACCCACAT
1 CAGATCACCCACAT
49464928 GTTGGTTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.41, G:0.07, T:0.14
Consensus pattern (15 bp):
CAGATCACCCACATA
Found at i:49482994 original size:21 final size:21
Alignment explanation
Indices: 49482966--49483007 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
49482956 ATTACTTTCC
*
49482966 TGTAATCA-ATTTTCTTTTAA
1 TGTAATCATATTTTCCTTTAA
49482986 TGTATATCATATTTTCCTTTAA
1 TGTA-ATCATATTTTCCTTTAA
49483008 AACTTTTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 4 0.21
22 11 0.58
ACGTcount: A:0.29, C:0.12, G:0.05, T:0.55
Consensus pattern (21 bp):
TGTAATCATATTTTCCTTTAA
Found at i:49483635 original size:19 final size:20
Alignment explanation
Indices: 49483613--49483655 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
49483603 TTTTATAAGA
* *
49483613 ATTTAATTAATTTTTAATT-
1 ATTTAATGAATTCTTAATTG
*
49483632 ATTTTATGAATTCTTAATTG
1 ATTTAATGAATTCTTAATTG
49483652 ATTT
1 ATTT
49483656 TTAGAAATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (20 bp):
ATTTAATGAATTCTTAATTG
Found at i:49483649 original size:30 final size:29
Alignment explanation
Indices: 49483598--49483658 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 29
49483588 AATTTTTTAA
49483598 AATTATTTTATAAGAATTTAATTAATTTTT
1 AATTATTTTAT-AGAATTTAATTAATTTTT
*
49483628 AATTATTTTAT-GAATTCTTAATTGATTTTT
1 AATTATTTTATAGAA-T-TTAATTAATTTTT
49483658 A
1 A
49483659 GAAATGATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 3 0.11
29 1 0.04
30 24 0.86
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (29 bp):
AATTATTTTATAGAATTTAATTAATTTTT
Found at i:49484705 original size:26 final size:29
Alignment explanation
Indices: 49484662--49484725 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 29
49484652 ATCTAACTTG
*
49484662 TATAATTTTTCTACAATTTTCT-AT-TTT
1 TATAATTTTTCTACAATTTTATAATATTT
49484689 TATAA-TTTTCT-CAAATTTTATAATATTT
1 TATAATTTTTCTAC-AATTTTATAATATTT
49484717 TAATAATTT
1 T-ATAATTT
49484726 CTAAACTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
25 1 0.03
26 13 0.42
27 7 0.23
28 4 0.13
29 4 0.13
30 2 0.06
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (29 bp):
TATAATTTTTCTACAATTTTATAATATTT
Found at i:49488265 original size:16 final size:17
Alignment explanation
Indices: 49488244--49488278 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
49488234 AATTAATTTA
*
49488244 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
49488260 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
49488277 AA
1 AA
49488279 CCCAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:49497762 original size:12 final size:12
Alignment explanation
Indices: 49497747--49497801 Score: 55
Period size: 11 Copynumber: 4.8 Consensus size: 12
49497737 AACAAATCCT
49497747 CTCTCAAATTTC
1 CTCTCAAATTTC
*
49497759 CTCTC-AATTTT
1 CTCTCAAATTTC
49497770 CTCTC-AATTTC
1 CTCTCAAATTTC
49497781 CT-TCCAAATTT-
1 CTCT-CAAATTTC
*
49497792 ATCTCAAATT
1 CTCTCAAATT
49497802 CATATTTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
10 1 0.03
11 25 0.68
12 11 0.30
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.45
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:49497772 original size:23 final size:23
Alignment explanation
Indices: 49497746--49497801 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
49497736 AAACAAATCC
*
49497746 TCTCTCAAATTTCC-TCTCAATTT
1 TCTCTCAAATTTCCTTC-CAAATT
49497769 TCTCTC-AATTTCCTTCCAAATT
1 TCTCTCAAATTTCCTTCCAAATT
*
49497791 TATCTCAAATT
1 TCTCTCAAATT
49497802 CATATTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 17 0.59
23 12 0.41
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.46
Consensus pattern (23 bp):
TCTCTCAAATTTCCTTCCAAATT
Found at i:49497859 original size:51 final size:51
Alignment explanation
Indices: 49497760--49497859 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 51
49497750 TCAAATTTCC
** * *
49497760 TCTCAATTTTCTCTCAATTTCCTTCCAAATTTATCTCAAATTCATATTTAA
1 TCTCAATTAGCTCTCAATTTCCTTCCAAATCTATCTCAAATCCATATTTAA
** * * *
49497811 TCTCAATTAGCTCTCAATTTCCTTTTAAATCTCTCTTAAATCCCTATTT
1 TCTCAATTAGCTCTCAATTTCCTTCCAAATCTATCTCAAATCCATATTT
49497860 TTTAAATGAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.27, C:0.25, G:0.01, T:0.47
Consensus pattern (51 bp):
TCTCAATTAGCTCTCAATTTCCTTCCAAATCTATCTCAAATCCATATTTAA
Found at i:49500509 original size:51 final size:51
Alignment explanation
Indices: 49500343--49500687 Score: 344
Period size: 51 Copynumber: 6.8 Consensus size: 51
49500333 CTTTAATCAT
* * * *
49500343 TCGATACTCGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGA-CCATTATTTA
* * * *
49500394 -CTG-TTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCA-AAGCTTT-
1 TC-GATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATTA--TTTA
* * ** * * * *
49500444 TCGGTACACATAGTAGCCTTCACTTAGTACTAAACATGTGGCCATCATTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATTATTTA
* * * *
49500495 TCGATACAGGTAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGCTTC
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATTA-TTTA
* * ** *
49500546 TCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATTATTTA
* *
49500597 TCAATACATGTAGTAGCCTTCACACAGTACTACACACGTGACCATTATTTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATTATTTA
49500648 -CTGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TC-GATACACGTAGTAGCCTTCACACAGTACTACACACGTG
49500688 TTCATCGATA
Statistics
Matches: 241, Mismatches: 42, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
49 1 0.00
50 42 0.17
51 196 0.81
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (51 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCATTATTTA
Found at i:49500528 original size:102 final size:102
Alignment explanation
Indices: 49500402--49500640 Score: 406
Period size: 102 Copynumber: 2.3 Consensus size: 102
49500392 TACTGTTCAC
* * *
49500402 GTAGTAGCCTTCACATAGTACTACACACGTGATCAAAGCTTTTCGGTACACATAGTAGCCTTCAC
1 GTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTTCAC
* *
49500467 TTAGTACTAAACATGTGGCCATCATTTATCGATACAG
66 TTAGTACTAAACATGTGACCATCATTTATCAATACAG
49500504 GTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTTCAC
1 GTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTTCAC
* * *
49500569 TTAGTACTACACATGTGACCATTATTTATCAATACAT
66 TTAGTACTAAACATGTGACCATCATTTATCAATACAG
49500606 GTAGTAGCCTTCACACAGTACTACACACGTGACCA
1 GTAGTAGCCTTCACACAGTACTACACACGTGACCA
49500641 TTATTTACTG
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 129 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (102 bp):
GTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATAGTAGCCTTCAC
TTAGTACTAAACATGTGACCATCATTTATCAATACAG
Found at i:49500627 original size:153 final size:151
Alignment explanation
Indices: 49500343--49500687 Score: 417
Period size: 153 Copynumber: 2.3 Consensus size: 151
49500333 CTTTAATCAT
* * * * * * *
49500343 TCGATACTCGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACTGTTCACGTAGTA
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTA
* ** **
49500408 GCCTTCACATAGTACTACACACGTGATCAAAGCTTTTCGGTACACATAGTAGCCTTCACTTAGTA
66 GCCTTCACATAGTACTACACACGTGACCAAA-CTTTTCAATACACATAGTAGCCTTCACACAGTA
* *
49500473 CTAAACATGTGGCCATCATTTA
130 CTAAACACGTGACCATCATTTA
*
49500495 TCGATACAGGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTACACATAG
1 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACC-AAG-TTCTACGGTACACATAG
* * * **
49500559 TAGCCTTCACTTAGTACTACACATGTGACCATTA-TTTATCAATACATGTAGTAGCCTTCACACA
64 TAGCCTTCACATAGTACTACACACGTGACCA-AACTTT-TCAATACACATAGTAGCCTTCACACA
* *
49500623 GTACTACACACGTGACCATTATTTA
127 GTACTAAACACGTGACCATCATTTA
49500648 -CTGATACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TC-GATACACGTAGTAGCCTTCACACAGTACTACACACGTG
49500688 TTCATCGATA
Statistics
Matches: 165, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
152 43 0.26
153 118 0.72
154 4 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (151 bp):
TCGATACACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAGTTCTACGGTACACATAGTA
GCCTTCACATAGTACTACACACGTGACCAAACTTTTCAATACACATAGTAGCCTTCACACAGTAC
TAAACACGTGACCATCATTTA
Found at i:49500656 original size:102 final size:101
Alignment explanation
Indices: 49500353--49500683 Score: 391
Period size: 102 Copynumber: 3.3 Consensus size: 101
49500343 TCGATACTCG
* * * ** *
49500353 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTA-CTGTTCACGTAGTAGCCTTCAC
1 TAGTAGCCTTCACATAGTACTACACATGTGA-CCATTATTTATCAATACACGTAGTAGCCTTCAC
* *
49500416 ATAGTACTACACACGTGATCAAAGCTTT-TCGGTACACA
65 ACAGTACTACACACGTGACCAAAG-TTTCT-GGTACACA
* * * * * *
49500454 TAGTAGCCTTCACTTAGTACTAAACATGTGGCCATCATTTATCGATACAGGTAGTAGCCTTCACA
1 TAGTAGCCTTCACATAGTACTACACATGTGACCATTATTTATCAATACACGTAGTAGCCTTCACA
*
49500519 CAGTACTACACACGTGACCAAAGCTTCTCGGTACACA
66 CAGTACTACACACGTGACCAAAGTTTCT-GGTACACA
* *
49500556 TAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCAATACATGTAGTAGCCTTCACA
1 TAGTAGCCTTCACATAGTACTACACATGTGACCATTATTTATCAATACACGTAGTAGCCTTCACA
* * *
49500621 CAGTACTACACACGTGACCATTA-TTTACTGATACACG
66 CAGTACTACACACGTGACCA-AAGTTT-CTGGTACACA
*
49500658 TAGTAGCCTTCACACAGTACTACACA
1 TAGTAGCCTTCACATAGTACTACACA
49500684 CGTGTTCATC
Statistics
Matches: 200, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
100 2 0.01
101 33 0.17
102 162 0.81
103 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (101 bp):
TAGTAGCCTTCACATAGTACTACACATGTGACCATTATTTATCAATACACGTAGTAGCCTTCACA
CAGTACTACACACGTGACCAAAGTTTCTGGTACACA
Found at i:49503354 original size:18 final size:18
Alignment explanation
Indices: 49503327--49503366 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
49503317 CAGGTGCATT
* *
49503327 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
49503345 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
49503363 TCCT
1 TCCT
49503367 TTTCCGAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:49503631 original size:21 final size:21
Alignment explanation
Indices: 49503607--49503653 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
49503597 CAACTCCGAC
* *
49503607 AACCAG-ATGCCCTACCGGAAG
1 AACCAGAAT-CCCCACCGCAAG
49503628 AACCAGAATCCCCACCGCAAG
1 AACCAGAATCCCCACCGCAAG
49503649 AACCA
1 AACCA
49503654 CAACCGCCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.38, C:0.38, G:0.17, T:0.06
Consensus pattern (21 bp):
AACCAGAATCCCCACCGCAAG
Found at i:49503951 original size:21 final size:21
Alignment explanation
Indices: 49503921--49504210 Score: 204
Period size: 21 Copynumber: 13.0 Consensus size: 21
49503911 CCTTAAACTT
*
49503921 TTAAACTAAAAACCCTAACCC
1 TTAACCTAAAAACCCTAACCC
*
49503942 TTAACTTAAAAACCCTAACCC
1 TTAACCTAAAAACCCTAACCC
** * *
49503963 TTAAATTAAAAACCATAAACAC
1 TTAACCTAAAAACCCT-AACCC
*
49503985 TTAAGCTAAAAAACGTAACCCTAAACCC
1 TTAACCT---AAA---AACCCT-AACCC
** * *
49504013 CAAAACTAAAAACCCTACACAC
1 TTAACCTAAAAACCCTA-ACCC
* *
49504035 -TAAACTTAAAACCCTAAACCC
1 TTAACCTAAAAACCCT-AACCC
*
49504056 TTAACCTAAAAATCCTAACCC
1 TTAACCTAAAAACCCTAACCC
* * *
49504077 TCAACTTAAAAATTGTAACCCTAAACC
1 TTAACCT--AAA----AACCCTAACCC
*
49504104 TCAAACCTAAAAACCCTAACCC
1 T-TAACCTAAAAACCCTAACCC
49504126 TTAACCTAAAAACCCTAAACCC
1 TTAACCTAAAAACCCT-AACCC
*
49504148 CTAACCTAAAAACCCTAACCC
1 TTAACCTAAAAACCCTAACCC
* *
49504169 TCAACCTAAAAACCTTAAACCC
1 TTAACCTAAAAACCCT-AACCC
*
49504191 TTAACATAAAAACCCTAACC
1 TTAACCTAAAAACCCTAACC
49504211 TAAAGGCTTA
Statistics
Matches: 216, Mismatches: 34, Indels: 38
0.75 0.12 0.13
Matches are distributed among these distances:
21 96 0.44
22 80 0.37
23 3 0.01
25 6 0.03
26 3 0.01
27 10 0.05
28 18 0.08
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (21 bp):
TTAACCTAAAAACCCTAACCC
Found at i:49504021 original size:92 final size:91
Alignment explanation
Indices: 49503923--49504180 Score: 315
Period size: 92 Copynumber: 2.8 Consensus size: 91
49503913 TTAAACTTTT
** *
49503923 AAACTAAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAAAACCATAAACACTT
1 AAACTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACCTAAAAACC-T-AACACTC
49503987 AAGC-TAAAAAACGTAACCCTAAACCCCA
64 AA-CTTAAAAAACGTAACCCTAAACCCCA
* * *
49504015 AAACTAAAAACCCTACACACTAAACTT-AAAACCCTAAACCCTTAACCTAAAAATCCTAACCCTC
1 AAACTAAAAACCCTA-ACCCTTAACTTAAAAACCCTAAACCCTTAACCTAAAAA-CCTAACACTC
** *
49504079 AACTTAAAAATTGTAACCCTAAACCTCA
64 AACTTAAAAAACGTAACCCTAAACCCCA
* * * *
49504107 AACCTAAAAACCCTAACCCTTAACCTAAAAACCCTAAACCCCTAACCTAAAAACCCTAACCCTCA
1 AAACTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACCTAAAAA-CCTAACACTCA
*
49504172 ACCTAAAAA
65 ACTTAAAAA
49504181 CCTTAAACCC
Statistics
Matches: 145, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
91 9 0.06
92 109 0.75
93 25 0.17
94 2 0.01
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (91 bp):
AAACTAAAAACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACCTAAAAACCTAACACTCAA
CTTAAAAAACGTAACCCTAAACCCCA
Found at i:49504097 original size:49 final size:45
Alignment explanation
Indices: 49503921--49504210 Score: 206
Period size: 43 Copynumber: 6.4 Consensus size: 45
49503911 CCTTAAACTT
* * *
49503921 TTAAACTAAAAACCCTAACCCTTAA-CT-TAAAAACCCT-AACCC
1 TTAACCTAAAAACCCTAACCCTCAACCTAAAAAAACCCTAAACCC
** * * * *
49503963 TTAAATTAAAAACCATAAACACTTAAGCTAAAAAACGTAACCCTAAACCC
1 TTAACCTAAAAACCCT-AACCCTCAACCT-AAAAA---AACCCTAAACCC
** * * * *
49504013 CAAAACTAAAAACCCTACACACT-AAACT--TAAAACCCTAAACCC
1 TTAACCTAAAAACCCTA-ACCCTCAACCTAAAAAAACCCTAAACCC
* *
49504056 TTAACCTAAAAATCCTAACCCTCAACTTAAAAATTGTAACCCTAAA-CC
1 TTAACCTAAAAACCCTAACCCTCAACCTAAAAA----AACCCTAAACCC
* *
49504104 TCAAACCTAAAAACCCTAACCCTTAACCT--AAAAACCCTAAACCC
1 T-TAACCTAAAAACCCTAACCCTCAACCTAAAAAAACCCTAAACCC
* *
49504148 CTAACCTAAAAACCCTAACCCTCAACCT--AAAAACCTTAAACCC
1 TTAACCTAAAAACCCTAACCCTCAACCTAAAAAAACCCTAAACCC
*
49504191 TTAACATAAAAACCCTAACC
1 TTAACCTAAAAACCCTAACC
49504211 TAAAGGCTTA
Statistics
Matches: 202, Mismatches: 28, Indels: 35
0.76 0.11 0.13
Matches are distributed among these distances:
42 18 0.09
43 102 0.50
44 4 0.02
45 2 0.01
46 5 0.02
47 3 0.01
48 3 0.01
49 43 0.21
50 22 0.11
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (45 bp):
TTAACCTAAAAACCCTAACCCTCAACCTAAAAAAACCCTAAACCC
Found at i:49504210 original size:43 final size:43
Alignment explanation
Indices: 49504001--49504210 Score: 217
Period size: 43 Copynumber: 4.7 Consensus size: 43
49503991 TAAAAAACGT
** * * * *
49504001 AACCCTAAACCCCAAAACTAAAAACCCTACACACT-AAACTTAA
1 AACCCTAAACCCTTAACCTAAAAACCCTA-ACCCTCAACCTAAA
* *
49504044 AACCCTAAACCCTTAACCTAAAAATCCTAACCCTCAACTTAAAAA
1 AACCCTAAACCCTTAACCTAAAAACCCTAACCCTCAACCT--AAA
* *
49504089 TTGTAACCCTAAA-CCTCAAACCTAAAAACCCTAACCCTTAACCTAAA
1 ----AACCCTAAACCCT-TAACCTAAAAACCCTAACCCTCAACCTAAA
*
49504136 AACCCTAAACCCCTAACCTAAAAACCCTAACCCTCAACCTAAA
1 AACCCTAAACCCTTAACCTAAAAACCCTAACCCTCAACCTAAA
* *
49504179 AACCTTAAACCCTTAACATAAAAACCCTAACC
1 AACCCTAAACCCTTAACCTAAAAACCCTAACC
49504211 TAAAGGCTTA
Statistics
Matches: 140, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
42 4 0.03
43 94 0.67
44 2 0.01
45 2 0.01
47 3 0.02
48 3 0.02
49 32 0.23
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (43 bp):
AACCCTAAACCCTTAACCTAAAAACCCTAACCCTCAACCTAAA
Found at i:49507480 original size:125 final size:124
Alignment explanation
Indices: 49507237--49507609 Score: 541
Period size: 125 Copynumber: 3.0 Consensus size: 124
49507227 CAAACATGCT
*
49507237 ACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
* *
49507302 GAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTTCAGGACCA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTT-TTTCAGGACCA
* * * * * * ** *
49507362 ACTGTAGCAGAAGAGCGTCCACGAGGGTGCGATTTCAGAAATTCTTCTCAGATCGCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
* * * *
49507427 GAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTTGAAATAATTTTTTCAGGACCT
66 GAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAGGACCA
* *
49507487 ACTGTAGCAAAACCGCCTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTAG-T
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT-GCT
*
49507551 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAAGACC
65 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAGGACC
49507610 CAAAAAATCC
Statistics
Matches: 215, Mismatches: 31, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
124 48 0.22
125 129 0.60
126 38 0.18
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAATTTTTTCAGGACCA
Found at i:49508105 original size:16 final size:15
Alignment explanation
Indices: 49508083--49508125 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
49508073 AAATTTTACA
*
49508083 AATTAAAAAATAATT
1 AATTAAAAAATAAAT
49508098 ATATT-AAAAATAAAT
1 A-ATTAAAAAATAAAT
49508113 AATATAAAAAATA
1 AAT-TAAAAAATA
49508126 TTCTATCACT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 2 0.08
15 12 0.50
16 10 0.42
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AATTAAAAAATAAAT
Found at i:49508108 original size:15 final size:15
Alignment explanation
Indices: 49508086--49508125 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
49508076 TTTTACAAAT
*
49508086 TAAAAAATAATTATA
1 TAAAAAATAATAATA
*
49508101 TTAAAAATAAATAATA
1 TAAAAAAT-AATAATA
49508117 TAAAAAATA
1 TAAAAAATA
49508126 TTCTATCACT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAAAAATAATAATA
Found at i:49508962 original size:14 final size:14
Alignment explanation
Indices: 49508943--49508981 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
49508933 TTGTTTCATT
*
49508943 GAAAATGGCTTCCG
1 GAAAATGACTTCCG
* *
49508957 GAAAATGATTTCTG
1 GAAAATGACTTCCG
49508971 GAAAATGACTT
1 GAAAATGACTT
49508982 ACTTTTTTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (14 bp):
GAAAATGACTTCCG
Found at i:49509099 original size:32 final size:32
Alignment explanation
Indices: 49509063--49509129 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
49509053 GGTTCTTTAA
49509063 AAATATTTCATAAAAGTCGTTCTCAATTAAAC
1 AAATATTTCATAAAAGTCGTTCTCAATTAAAC
49509095 AAATATTTCATAAAAGTCGTTCTCAATTAAAC
1 AAATATTTCATAAAAGTCGTTCTCAATTAAAC
49509127 AAA
1 AAA
49509130 CATGCATTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (32 bp):
AAATATTTCATAAAAGTCGTTCTCAATTAAAC
Found at i:49509218 original size:24 final size:24
Alignment explanation
Indices: 49509188--49509236 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
49509178 ATTTTATATC
*
49509188 TATAATTTTATATTTTACATTGCT
1 TATAATTTTATATTTTAAATTGCT
49509212 TATAATTTTATATTTTAAATTGCT
1 TATAATTTTATATTTTAAATTGCT
49509236 T
1 T
49509237 TTACATATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (24 bp):
TATAATTTTATATTTTAAATTGCT
Found at i:49509649 original size:18 final size:18
Alignment explanation
Indices: 49509611--49509646 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
49509601 TTATTATTTT
*
49509611 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
49509629 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
49509647 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:49515604 original size:9 final size:9
Alignment explanation
Indices: 49515582--49515637 Score: 53
Period size: 9 Copynumber: 5.9 Consensus size: 9
49515572 TACTATATCA
49515582 ATAAATAATT
1 ATAAA-AATT
49515592 -TAAAAATT
1 ATAAAAATT
49515600 ATAAAAA-T
1 ATAAAAATT
49515608 ATTAAAAATAT
1 A-TAAAAAT-T
49515619 ATAAAAAGTT
1 ATAAAAA-TT
49515629 CATAAAAAT
1 -ATAAAAAT
49515638 CCAAAAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
8 6 0.15
9 16 0.40
10 8 0.20
11 10 0.25
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:49515611 original size:11 final size:10
Alignment explanation
Indices: 49515592--49515625 Score: 54
Period size: 9 Copynumber: 3.6 Consensus size: 10
49515582 ATAAATAATT
49515592 TAAAAAT-TA
1 TAAAAATATA
49515601 TAAAAATAT-
1 TAAAAATATA
49515610 TAAAAATATA
1 TAAAAATATA
49515620 TAAAAA
1 TAAAAA
49515626 GTTCATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
TAAAAATATA
Found at i:49515621 original size:19 final size:17
Alignment explanation
Indices: 49515582--49515625 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 17
49515572 TACTATATCA
49515582 ATAAATAATTTAAAAATT
1 ATAAA-AATTTAAAAATT
49515600 ATAAAAATATTAAAAATAT
1 ATAAAAAT-TTAAAAAT-T
49515619 ATAAAAA
1 ATAAAAA
49515626 GTTCATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.12
18 13 0.54
19 8 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAAAATTTAAAAATT
Found at i:49519654 original size:28 final size:28
Alignment explanation
Indices: 49519623--49519677 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
49519613 CATTTTAACT
*
49519623 TTTTAGAATT-TTTTGTTTTCATATAATG
1 TTTTAGAATTATTTTATTTT-ATATAATG
*
49519651 TTTTATAATTATTTTATTTTATATAAT
1 TTTTAGAATTATTTTATTTTATATAAT
49519678 TGATAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (28 bp):
TTTTAGAATTATTTTATTTTATATAATG
Found at i:49520812 original size:28 final size:28
Alignment explanation
Indices: 49520755--49520812 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
49520745 ATAAGCAATT
* *
49520755 AATTATGTTTTAAATATAAAAAAATTAA
1 AATTATGTTTAAAATATAAAAAAATGAA
*
49520783 AATTAT-TTTAAAAGTATAAAAATATGAA
1 AATTATGTTTAAAA-TATAAAAAAATGAA
49520811 AA
1 AA
49520813 AAAATATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (28 bp):
AATTATGTTTAAAATATAAAAAAATGAA
Found at i:49524914 original size:22 final size:22
Alignment explanation
Indices: 49524884--49524940 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
49524874 TTAATTTTCA
*
49524884 TATACATATATATATACCTTAT
1 TATAAATATATATATACCTTAT
* * *
49524906 TATAAATATCTTTATATCTTAT
1 TATAAATATATATATACCTTAT
**
49524928 TATGTATATATAT
1 TATAAATATATAT
49524941 CTATATCTCT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.51
Consensus pattern (22 bp):
TATAAATATATATATACCTTAT
Found at i:49524935 original size:26 final size:25
Alignment explanation
Indices: 49524902--49524951 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
49524892 TATATATACC
*
49524902 TTATTATAAATATCTTTATATCTTA
1 TTATTATAAATATCTATATATCTTA
* *
49524927 TTATGTATATATATCTATATCTCTT
1 TTAT-TATAAATATCTATATATCTT
49524952 TTTAAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATTATAAATATCTATATATCTTA
Found at i:49527605 original size:16 final size:18
Alignment explanation
Indices: 49527579--49527613 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
49527569 TAAAATTGGG
49527579 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
49527596 TTGA-AAAATTAATTTAA
1 TTGAGAAAATTAATTTAA
49527613 T
1 T
49527614 AAATAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:49528807 original size:10 final size:9
Alignment explanation
Indices: 49528778--49528816 Score: 62
Period size: 9 Copynumber: 4.3 Consensus size: 9
49528768 TCAAAGTCTT
49528778 TAATTTTTA
1 TAATTTTTA
49528787 T-ATTTTTA
1 TAATTTTTA
49528795 TAATTTTTAA
1 TAATTTTT-A
49528805 TAATTTTTA
1 TAATTTTTA
49528814 TAA
1 TAA
49528817 GTTTATATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.29
9 11 0.39
10 9 0.32
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TAATTTTTA
Found at i:49528860 original size:18 final size:18
Alignment explanation
Indices: 49528837--49528874 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
49528827 ACTCTCATTT
49528837 TTTTAT-AATATTTTTATA
1 TTTTATGAATATTTTT-TA
*
49528855 TTTTATGATTATTTTTTA
1 TTTTATGAATATTTTTTA
49528873 TT
1 TT
49528875 AATTTTCTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTTATGAATATTTTTTA
Found at i:49534350 original size:16 final size:15
Alignment explanation
Indices: 49534328--49534363 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
49534318 TTTTTATATA
49534328 AATTTATAAATTTTT
1 AATTTATAAATTTTT
*
49534343 ATATTTATATATTTTT
1 A-ATTTATAAATTTTT
49534359 AATTT
1 AATTT
49534364 CAAAATAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
AATTTATAAATTTTT
Found at i:49536302 original size:14 final size:14
Alignment explanation
Indices: 49536283--49536316 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
49536273 TTATTTCACT
*
49536283 GAAAATAGTTTTCG
1 GAAAATAATTTTCG
*
49536297 GAAAATAATTTTTG
1 GAAAATAATTTTCG
49536311 GAAAAT
1 GAAAAT
49536317 GACTTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.35
Consensus pattern (14 bp):
GAAAATAATTTTCG
Found at i:49536347 original size:19 final size:20
Alignment explanation
Indices: 49536300--49536347 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
49536290 GTTTTCGGAA
*
49536300 AATAATTTTTGGAAAATGACT
1 AATATTTTTTGGAAAA-GACT
* *
49536321 TATTTTTTTTGGAAAA-ACT
1 AATATTTTTTGGAAAAGACT
49536340 AATATTTT
1 AATATTTT
49536348 CTGATGTTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 9 0.41
21 13 0.59
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (20 bp):
AATATTTTTTGGAAAAGACT
Found at i:49542288 original size:35 final size:36
Alignment explanation
Indices: 49542227--49542299 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 36
49542217 AATGCATAAT
49542227 ATAATAATAATGTTTTTTTAACAAAAAAT-AATTAA
1 ATAATAATAATGTTTTTTTAACAAAAAATGAATTAA
*** *
49542262 ATAA-AATAATAGTTTTTTTCTTAAAAAATGGATTAA
1 ATAATAATAAT-GTTTTTTTAACAAAAAATGAATTAA
49542298 AT
1 AT
49542300 TGAGCTTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 6 0.19
35 19 0.59
36 7 0.22
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (36 bp):
ATAATAATAATGTTTTTTTAACAAAAAATGAATTAA
Found at i:49542835 original size:10 final size:9
Alignment explanation
Indices: 49542813--49542861 Score: 55
Period size: 9 Copynumber: 5.3 Consensus size: 9
49542803 TTTTTATTAT
49542813 AAAT-AAAA
1 AAATAAAAA
49542821 AAATAAAATA
1 AAATAAAA-A
*
49542831 AAATAGAAA
1 AAATAAAAA
*
49542840 GAATAGAAAA
1 AAATA-AAAA
49542850 AAATAAAAA
1 AAATAAAAA
49542859 AAA
1 AAA
49542862 GTCCTGATTC
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
8 4 0.12
9 15 0.44
10 15 0.44
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (9 bp):
AAATAAAAA
Found at i:49542852 original size:19 final size:18
Alignment explanation
Indices: 49542813--49542860 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
49542803 TTTTTATTAT
49542813 AAATAAAAAAATAAAATA
1 AAATAAAAAAATAAAATA
*
49542831 AAATAGAAAGAATAGAAA-A
1 AAATA-AAAAAATA-AAATA
49542850 AAATAAAAAAA
1 AAATAAAAAAA
49542861 AGTCCTGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 10 0.38
19 13 0.50
20 3 0.12
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.12
Consensus pattern (18 bp):
AAATAAAAAAATAAAATA
Found at i:49543734 original size:44 final size:45
Alignment explanation
Indices: 49543686--49544017 Score: 226
Period size: 44 Copynumber: 7.6 Consensus size: 45
49543676 GCCATCTTTG
**
49543686 ATCTACTCCACTACTGCCT-TTGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATCTTCA
* * * * *
49543730 ATCTATTCCACTATTG-CTCAAGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * ** *
49543773 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTACT-GCCTCAGGGAGATAAGATCTGTAATCTTCA
*
49543818 ATATACTCCACTACTGCCT-AGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATCTTCA
* * * *
49543862 ATCTATTCCACTATTG-CTCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * *
49543905 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCT-ATCTTCG
1 ATCTACTCCACTACT-GCCTCAGGGAGATAAGATCTG-TAATCTTCA
*
49543950 ATCTACTACACTACTGCCT-AGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATCTTCA
* *
49543994 ATCTATTCCACTGCTGCC-CAGGGA
1 ATCTACTCCACTACTGCCTCAGGGA
49544018 AGTAGAAATA
Statistics
Matches: 215, Mismatches: 52, Indels: 42
0.70 0.17 0.14
Matches are distributed among these distances:
41 6 0.03
42 4 0.02
43 41 0.19
44 119 0.55
45 39 0.18
46 3 0.01
47 2 0.01
48 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (45 bp):
ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATCTTCA
Found at i:49543796 original size:132 final size:132
Alignment explanation
Indices: 49543555--49544524 Score: 1348
Period size: 132 Copynumber: 7.4 Consensus size: 132
49543545 GTTATTTCTG
* ** * * * *
49543555 TCTGCTCCATTACAACTTCAGGGAGACAAGA-CTTGT-ATCTTCAATTTATTCCACTGTTGCTCA
1 TCTGCTCCACTACTGCTT-AGGGAGATAAGATC-TGTAATCTTCAATCTATTCCACTGCTGCCCA
49543618 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
64 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
49543683 TTGA
129 TTGA
* * ** * *
49543687 TCTACTCCACTACTGCCTT-TGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGCTCAA
1 TCTGCTCCACTACTG-CTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
49543751 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTT
65 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTT
*
49543816 CGA
130 TGA
* * * ** *
49543819 TATACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGCTCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* * *
49543884 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCTATCTTC
66 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTT
49543949 GA
131 GA
* * *
49543951 TCTACTACACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* *
49544016 GA-AGTAGAAATACTGGCTTCAATGTACTCCA-TTTAA-CTACAGGGAGGTAAAATCCGCCATCT
66 GAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCCGCCATCT
49544078 TTGA
129 TTGA
* * ** *
49544082 TCTGCTCTACTACTGCTTAGGGAGACAAGATCTAAAATCTTCAATCTAATCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* * *
49544147 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTCACTATCTTT
66 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTT
49544212 GA
131 GA
* * *
49544214 TCTGCTACACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* *
49544279 GA-AGTAGAATTACTGGCTTCAATGTACTCCA-TTTAA-CTACAGAGAGGTAAAATCCGCCATCT
66 GAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCCGCCATCT
49544341 TTGA
129 TTGA
* * *
49544345 TCTGCTCCACTACTGCTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
* * * * *
49544410 GA-AGTAGAATTACTGGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATTCACCATATT
66 GAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTT
49544474 TGA
130 TGA
*
49544477 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTA
49544525 CTTCACGCCA
Statistics
Matches: 764, Mismatches: 61, Indels: 26
0.90 0.07 0.03
Matches are distributed among these distances:
130 4 0.01
131 249 0.33
132 505 0.66
133 6 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTT
GA
Found at i:49543929 original size:88 final size:87
Alignment explanation
Indices: 49543572--49543977 Score: 206
Period size: 88 Copynumber: 4.6 Consensus size: 87
49543562 CATTACAACT
* * * *
49543572 TCAGGGAGACAAGA-CTTGTATCTTCAATTTATTCCACTGTTGCTCAGGGAGATAGAAT-TACTG
1 TCAGGGAGATAAGATC-TGTATCTTCAATCTACTCCACTATTGCTCAGGGAGATAGAATCTACTG
49543635 GCTTCAATGTACTCCACTGTAACC
65 GCTTCAATGTACTCCACTGT-ACC
* * * * ** * **
49543659 TCAGGGAGGTAAAATCCGCCATCTTTGATCTACTCCACTACTGC-CTTTGGAGATA-AGATCTGT
1 TCAGGGAGATAAGATCTG-TATCTTCAATCTACTCCACTATTGCTC-AGGGAGATAGA-ATC--T
* * * * **
49543722 AAT--CTTCAATCTATTCCACTATTGC
61 ACTGGCTTCAATGTACTCCACTGTACC
* * * * ** * * **
49543747 TCAAGGAGAT-AGAATTACTG--GCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCG
1 TCAGGGAGATAAG-A-T-CTGTATCTTCAATCTACTCCACTAT-TGCTCAGGGAGATAGAATCTA
*** * * * *
49543809 CCATCTTCGATATACTCCACTACTGCC
62 CTGGCTTCAATGTACTCCACT-GTACC
*
49543836 T-AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGCTCAGGGAGATAGAAT-TACTG
1 TCAGGGAGATAAGATCTGT-ATCTTCAATCTACTCCACTATTGCTCAGGGAGATAGAATCTACTG
49543899 GCTTCAATGTACTCCACTGTAACC
65 GCTTCAATGTACTCCACTGT-ACC
* * * * *
49543923 TCAGGGAGGTAAAATCTGCTATCTTCGATCTACTACACTACTGC-CTAGGGAGATA
1 TCAGGGAGATAAGATCTG-TATCTTCAATCTACTCCACTATTGCTC-AGGGAGATA
49543978 AGATCTGTAA
Statistics
Matches: 227, Mismatches: 68, Indels: 47
0.66 0.20 0.14
Matches are distributed among these distances:
86 4 0.02
87 50 0.22
88 127 0.56
89 41 0.18
90 2 0.01
91 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (87 bp):
TCAGGGAGATAAGATCTGTATCTTCAATCTACTCCACTATTGCTCAGGGAGATAGAATCTACTGG
CTTCAATGTACTCCACTGTACC
Found at i:49544210 original size:263 final size:263
Alignment explanation
Indices: 49543555--49544524 Score: 1412
Period size: 263 Copynumber: 3.7 Consensus size: 263
49543545 GTTATTTCTG
* ** * * * *
49543555 TCTGCTCCATTACAACTTCAGGGAGACAAGA-CTTG-TATCTTCAATTTATTCCACTGTTGCTCA
1 TCTGCTCCACTACTGCTT-AGGGAGACAAGATC-TGAAATCTTCAATCTATTCCACTGCTGCCCA
* *
49543618 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
64 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTCACCATCT
* ** ** *
49543683 TTGATCTACTCCACTACTGCCTTTGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGCT
129 TTGATCTACTACACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
* *
49543748 CAAGG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCCGCC
194 CAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCA-TTTAA-CTACAGGGAGGTAAAATCCGCC
*
49543811 ATCTTCGA
256 ATCTTTGA
* * * * * ** *
49543819 TATACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGCTCAGG
1 TCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
* *
49543884 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAA-TCTGCTATCTT
66 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTC-ACCATCTT
*
49543948 CGATCTACTACACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
130 TGATCTACTACACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
*
49544013 AGGGAAGTAGAAATACTGGCTTCAATGTACTCCATTTAACTACAGGGAGGTAAAATCCGCCATCT
195 AGGGAAGTAGAATTACTGGCTTCAATGTACTCCATTTAACTACAGGGAGGTAAAATCCGCCATCT
49544078 TTGA
260 TTGA
* * *
49544082 TCTGCTCTACTACTGCTTAGGGAGACAAGATCTAAAATCTTCAATCTAATCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
*
49544147 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTCACTATCTTT
66 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTCACCATCTTT
* * * *
49544212 GATCTGCTACACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
131 GATCTACTACACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCA
*
49544277 GGGAAGTAGAATTACTGGCTTCAATGTACTCCATTTAACTACAGAGAGGTAAAATCCGCCATCTT
196 GGGAAGTAGAATTACTGGCTTCAATGTACTCCATTTAACTACAGGGAGGTAAAATCCGCCATCTT
49544342 TGA
261 TGA
*
49544345 TCTGCTCCACTACTGCTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGCCCAGG
1 TCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
* * *
49544410 GA-AGTAGAATTACTGGCTTCAATATACTCCACTGTAACCACAGGGAGGTAAAATTCACCATATT
66 GAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTCACCATCTT
* * * *
49544474 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTA
130 TGATCTACTACACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTA
49544525 CTTCACGCCA
Statistics
Matches: 645, Mismatches: 54, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
262 3 0.00
263 451 0.70
264 189 0.29
265 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (263 bp):
TCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTCACCATCTTT
GATCTACTACACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCA
GGGAAGTAGAATTACTGGCTTCAATGTACTCCATTTAACTACAGGGAGGTAAAATCCGCCATCTT
TGA
Found at i:49544304 original size:395 final size:395
Alignment explanation
Indices: 49543574--49544524 Score: 1369
Period size: 395 Copynumber: 2.4 Consensus size: 395
49543564 TTACAACTTC
* * *
49543574 AGGGAGACAAGA-CTTGT-ATCTTCAATTTATTCCACTGTTGCTCAGGG-AGATAGAATTACTGG
1 AGGGAGACAAGATC-TGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGG
*
49543636 CTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCCGCCATCTTTGATCTACTCCACTAC
64 CTTCAATGTACTCCACTGTAA-CTACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTAC
* * * *
49543700 TGCCTT-TGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGCTCAAGGAGATAGAATTA
128 TG-CTTAGGGAGATAAGATCTGTAATCTTCAATCTAATCCACTACTGCCCAAGGAGATAGAATTA
* *
49543764 CTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATATACTCCAC
192 CTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATATACTACAC
* * * *
49543829 TACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTATTGCTCAGGGAGATAGAAT
257 TACTGCCTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTACTGCCCAGGGAGATAGAAT
* * *
49543894 TACTGGCTTCAATGTACTCCACTGTAACCT-CAGGGAGGTAAAATCTGCTATCTTCGATCTACTA
322 TACTGGCTTCAATGTACTCCA-TGTAA-CTACAGAGAGGTAAAATCCGCCATCTTCGATCTACTA
49543958 CACTACTGCCT
385 CACTACTGCCT
* *
49543969 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAAATACTGGCT
1 AGGGAGACAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCT
* *
49544034 TCAATGTACTCCA-TTTAACTACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCTACTACTGC
66 TCAATGTACTCCACTGTAACTACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGC
* ** * *
49544098 TTAGGGAGACAAGATCTAAAATCTTCAATCTAATCCACTGCTGCCCAGGGAGATAGAATTACTGG
131 TTAGGGAGATAAGATCTGTAATCTTCAATCTAATCCACTACTGCCCAAGGAGATAGAATTACTGG
* * * * *
49544163 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATTCACTATCTTTGATCTGCTACACTACT
196 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATATACTACACTACT
* *
49544228 GCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTAC
261 GCCTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTACTGCCCAGGGAGA-TAGAATTAC
* * * *
49544292 TGGCTTCAATGTACTCCATTTAACTACAGAGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTA
325 TGGCTTCAATGTACTCCATGTAACTACAGAGAGGTAAAATCCGCCATCTTCGATCTACTACACTA
*
49544357 CTGCTT
390 CTGCCT
* *
49544363 AGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCT
1 AGGGAGACAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCT
* * * * *
49544428 TCAATATACTCCACTGTAACCACAGGGAGGTAAAATTCACCATATTTGATCTGCTCCACTACTGC
66 TCAATGTACTCCACTGTAACTACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGC
*
49544493 TTAGGGAGATAAGATCTGTAATCTTCGATCTA
131 TTAGGGAGATAAGATCTGTAATCTTCAATCTA
49544525 CTTCACGCCA
Statistics
Matches: 495, Mismatches: 53, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
393 2 0.00
394 121 0.24
395 316 0.64
396 54 0.11
397 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (395 bp):
AGGGAGACAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCT
TCAATGTACTCCACTGTAACTACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGC
TTAGGGAGATAAGATCTGTAATCTTCAATCTAATCCACTACTGCCCAAGGAGATAGAATTACTGG
CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATATACTACACTACT
GCCTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTACTGCCCAGGGAGATAGAATTACT
GGCTTCAATGTACTCCATGTAACTACAGAGAGGTAAAATCCGCCATCTTCGATCTACTACACTAC
TGCCT
Found at i:49544561 original size:44 final size:44
Alignment explanation
Indices: 49544503--49544767 Score: 237
Period size: 44 Copynumber: 6.0 Consensus size: 44
49544493 TTAGGGAGAT
49544503 AAGATCTG-TAATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCT-ATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * *
49544547 AGGATCTGCTATCTTCGATCTACCTCATGCCAATATATGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * * * * * * *
49544591 AGGATCTGCTTTCTTCAATCTACTCCACCACCAGTATAGGGAGAT
1 AAGATCTGCTATCTTCGATCTACTTCA-CGCCAATACATGAAGAC
* * *
49544636 AAGATCTGTTGACCCT-GATCTACTTCACGCCAATACATGAAGAC
1 AAGATCTGCT-ATCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * * ***
49544680 AAGATCTGCTTTCTTTGATCTACTTCGCCACCAGTATGGGAAGAC
1 AAGATCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGAC
* *
49544725 AAGATCTGCTATCTTCGATCTACTTTATGCCAATACATGAAGA
1 AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGA
49544768 GAGAATCTGC
Statistics
Matches: 169, Mismatches: 47, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
43 2 0.01
44 101 0.60
45 64 0.38
46 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (44 bp):
AAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAC
Found at i:49544668 original size:89 final size:89
Alignment explanation
Indices: 49544541--49544780 Score: 286
Period size: 89 Copynumber: 2.7 Consensus size: 89
49544531 GCCAATACAT
* * * * *
49544541 GAAGACAGGATCTGCTATCTTCGATCTACCTCATGCCAATATATGAAGACAGGATCTGCTTTCTT
1 GAAGACAAGATCTGCTACCCTCGATCTACTTCATGCCAATACATGAAGACAGGATCTGCTTTCTT
49544606 CAATCTACTCCACCACCAGTATAGG
66 CAATCTACTCCACCACCAGTAT-GG
* * * *
49544631 G-AGATAAGATCTGTTGACCCT-GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
1 GAAGACAAGATCTGCT-ACCCTCGATCTACTTCATGCCAATACATGAAGACAGGATCTGCTTTCT
** * *
49544694 TTGATCTACTTCGCCACCAGTATGG
65 TCAATCTACTCCACCACCAGTATGG
* * * * *
49544719 GAAGACAAGATCTGCTATCTTCGATCTACTTTATGCCAATACATGAAGAGAGAATCTGCTTT
1 GAAGACAAGATCTGCTACCCTCGATCTACTTCATGCCAATACATGAAGACAGGATCTGCTTT
49544781 TTTCCTAGCC
Statistics
Matches: 125, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
88 6 0.05
89 115 0.92
90 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (89 bp):
GAAGACAAGATCTGCTACCCTCGATCTACTTCATGCCAATACATGAAGACAGGATCTGCTTTCTT
CAATCTACTCCACCACCAGTATGG
Found at i:49546101 original size:7 final size:7
Alignment explanation
Indices: 49546089--49546127 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
49546079 AGCCTCTCCA
49546089 TTTTATT
1 TTTTATT
49546096 TTTTATT
1 TTTTATT
49546103 TTTTA-T
1 TTTTATT
*
49546109 TTTCATCT
1 TTTTAT-T
49546117 TTTTATT
1 TTTTATT
49546124 TTTT
1 TTTT
49546128 CACATCATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 5 0.18
7 17 0.61
8 6 0.21
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTATT
Found at i:49547121 original size:18 final size:18
Alignment explanation
Indices: 49547098--49547137 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
49547088 TAGTTTGGCA
49547098 GAAAAAATC-TAAAAGAAT
1 GAAAAAATCGT-AAAGAAT
49547116 GAAAAAATCGTAAAGAAT
1 GAAAAAATCGTAAAGAAT
49547134 GAAA
1 GAAA
49547138 GAACATTTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.65, C:0.05, G:0.15, T:0.15
Consensus pattern (18 bp):
GAAAAAATCGTAAAGAAT
Found at i:49551900 original size:19 final size:18
Alignment explanation
Indices: 49551861--49551909 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
49551851 TTTTTATTAT
49551861 AAATAAAAAAATAAAATA
1 AAATAAAAAAATAAAATA
* *
49551879 AAATAGAAAGAATAGAAAAA
1 AAATA-AAAAAATA-AAATA
49551899 AAATAAAAAAA
1 AAATAAAAAAA
49551910 GTCCCGATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 5 0.19
19 12 0.46
20 9 0.35
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (18 bp):
AAATAAAAAAATAAAATA
Found at i:49553012 original size:18 final size:17
Alignment explanation
Indices: 49552965--49553014 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 17
49552955 GTTAATGATT
49552965 TAATATAAATATATATAA
1 TAATAT-AATATATATAA
49552983 TAATTATTTAATATATATAA
1 TAA-TA--TAATATATATAA
49553003 TCAATATAATAT
1 T-AATATAATAT
49553015 TGTTTTATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
18 9 0.32
19 2 0.07
20 14 0.50
21 3 0.11
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATATAATATATATAA
Found at i:49554016 original size:49 final size:50
Alignment explanation
Indices: 49553924--49554021 Score: 128
Period size: 49 Copynumber: 2.0 Consensus size: 50
49553914 GCATTATTTT
* *
49553924 ATGTTGTTTCAAGCTTTTTTTATTTTTAATTAATGTTTATAATTAATAAAA
1 ATGTTGTTTCAA-CTTTTTTTATTTTGAATTAATATTTATAATTAATAAAA
* *
49553975 ATGTTTTTTCAA-TTTTTTTATTTTGAATTCATCATTT-TAATTAATAA
1 ATGTTGTTTCAACTTTTTTTATTTTGAATTAAT-ATTTATAATTAATAA
49554022 CTCTTTTAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
49 28 0.67
50 3 0.07
51 11 0.26
ACGTcount: A:0.32, C:0.05, G:0.06, T:0.57
Consensus pattern (50 bp):
ATGTTGTTTCAACTTTTTTTATTTTGAATTAATATTTATAATTAATAAAA
Found at i:49556887 original size:15 final size:17
Alignment explanation
Indices: 49556867--49556898 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
49556857 TCTTTTAATA
49556867 ATATTT-TT-TATAAAT
1 ATATTTATTATATAAAT
49556882 ATATTTATTATATAAAT
1 ATATTTATTATATAAAT
49556899 TTTATACAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATATTTATTATATAAAT
Found at i:49559219 original size:17 final size:17
Alignment explanation
Indices: 49559192--49559225 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
49559182 AAATAAATAG
49559192 TTAAATAAAAAGTTAAAA
1 TTAAATAAAAAG-TAAAA
49559210 TTAAAT-AAAAGTAAAA
1 TTAAATAAAAAGTAAAA
49559226 AATGAAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 5 0.31
18 6 0.38
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (17 bp):
TTAAATAAAAAGTAAAA
Found at i:49559228 original size:18 final size:18
Alignment explanation
Indices: 49559192--49559226 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
49559182 AAATAAATAG
*
49559192 TTAAATAAAAAGTTAAAA
1 TTAAATAAAAAGTAAAAA
49559210 TTAAAT-AAAAGTAAAAA
1 TTAAATAAAAAGTAAAAA
49559227 ATGAAATTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
TTAAATAAAAAGTAAAAA
Found at i:49561525 original size:15 final size:15
Alignment explanation
Indices: 49561505--49561535 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
49561495 CGAATCACCA
49561505 TCTAGAGATTGCTAG
1 TCTAGAGATTGCTAG
*
49561520 TCTAGAGATTGTTAG
1 TCTAGAGATTGCTAG
49561535 T
1 T
49561536 AAGACTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (15 bp):
TCTAGAGATTGCTAG
Found at i:49567156 original size:13 final size:13
Alignment explanation
Indices: 49567134--49567201 Score: 68
Period size: 13 Copynumber: 5.2 Consensus size: 13
49567124 CGCTTCTCCA
49567134 TTTG-TTATTTCT
1 TTTGTTTATTTCT
49567146 TTTGTTTATTTCT
1 TTTGTTTATTTCT
* * *
49567159 TTTCATTTGGTTTAT
1 TTT-GTTT-ATTTCT
*
49567174 TTTG-TTATTTAT
1 TTTGTTTATTTCT
49567186 TTTGTTTATTTCT
1 TTTGTTTATTTCT
49567199 TTT
1 TTT
49567202 CATTTTGTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
12 13 0.28
13 23 0.50
14 3 0.07
15 7 0.15
ACGTcount: A:0.10, C:0.06, G:0.09, T:0.75
Consensus pattern (13 bp):
TTTGTTTATTTCT
Found at i:49567173 original size:19 final size:19
Alignment explanation
Indices: 49567141--49567215 Score: 98
Period size: 19 Copynumber: 3.9 Consensus size: 19
49567131 CCATTTGTTA
49567141 TTTC-TTTTGTTTATTTCT
1 TTTCATTTTGTTTATTTCT
* *
49567159 TTTCATTTGGTTTATTTTGT
1 TTTCATTTTGTTTA-TTTCT
*
49567179 TATTTATTTTGTTTATTTCT
1 T-TTCATTTTGTTTATTTCT
49567199 TTTCATTTTGTTTATTT
1 TTTCATTTTGTTTATTT
49567216 TGTCAATACT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
18 4 0.08
19 23 0.48
20 10 0.21
21 11 0.23
ACGTcount: A:0.11, C:0.07, G:0.08, T:0.75
Consensus pattern (19 bp):
TTTCATTTTGTTTATTTCT
Found at i:49567189 original size:40 final size:40
Alignment explanation
Indices: 49567134--49567218 Score: 152
Period size: 40 Copynumber: 2.1 Consensus size: 40
49567124 CGCTTCTCCA
*
49567134 TTTGTTATTTCTTTTGTTTATTTCTTTTCATTTGGTTTAT
1 TTTGTTATTTATTTTGTTTATTTCTTTTCATTTGGTTTAT
*
49567174 TTTGTTATTTATTTTGTTTATTTCTTTTCATTTTGTTTAT
1 TTTGTTATTTATTTTGTTTATTTCTTTTCATTTGGTTTAT
49567214 TTTGT
1 TTTGT
49567219 CAATACTAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.11, C:0.06, G:0.09, T:0.74
Consensus pattern (40 bp):
TTTGTTATTTATTTTGTTTATTTCTTTTCATTTGGTTTAT
Found at i:49567193 original size:9 final size:9
Alignment explanation
Indices: 49567145--49567218 Score: 62
Period size: 9 Copynumber: 7.7 Consensus size: 9
49567135 TTGTTATTTC
49567145 TTTTGTTTA
1 TTTTGTTTA
49567154 TTTCT-TTTCA
1 TTT-TGTTT-A
*
49567164 TTTGGTTTA
1 TTTTGTTTA
49567173 TTTTGTTATTTA
1 TTTTG---TTTA
49567185 TTTTGTTTA
1 TTTTGTTTA
49567194 TTTCT-TTTCA
1 TTT-TGTTT-A
49567204 TTTTGTTTA
1 TTTTGTTTA
49567213 TTTTGT
1 TTTTGT
49567219 CAATACTAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
9 29 0.54
10 16 0.30
12 9 0.17
ACGTcount: A:0.11, C:0.05, G:0.09, T:0.74
Consensus pattern (9 bp):
TTTTGTTTA
Found at i:49570124 original size:41 final size:41
Alignment explanation
Indices: 49570062--49570189 Score: 193
Period size: 41 Copynumber: 3.1 Consensus size: 41
49570052 ATTCGCAGCA
* *
49570062 TTTATGGAAAAAACGCCGCTATTGCCTTACCTTTTGTGGCG
1 TTTATGGGAAAAACGCCGCTATTGCCTTACCTTTTGCGGCG
* *
49570103 TTTATGGGAAAAACGCTGCTATTGCCTTACCTTTTGCGGTG
1 TTTATGGGAAAAACGCCGCTATTGCCTTACCTTTTGCGGCG
* * *
49570144 TTTATGGGAAAAACACCGCTATTACCTTACATTTTGCGGCG
1 TTTATGGGAAAAACGCCGCTATTGCCTTACCTTTTGCGGCG
49570185 TTTAT
1 TTTAT
49570190 AGTAAAACGT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 78 1.00
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (41 bp):
TTTATGGGAAAAACGCCGCTATTGCCTTACCTTTTGCGGCG
Found at i:49570463 original size:15 final size:15
Alignment explanation
Indices: 49570443--49570480 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
49570433 TCATTAAGAA
*
49570443 AATATTTTATTTTTT
1 AATATTTTATCTTTT
49570458 AATATTTTATCTTTT
1 AATATTTTATCTTTT
*
49570473 GATATTTT
1 AATATTTT
49570481 TAAATATCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (15 bp):
AATATTTTATCTTTT
Found at i:49571155 original size:62 final size:62
Alignment explanation
Indices: 49571086--49571211 Score: 218
Period size: 62 Copynumber: 2.0 Consensus size: 62
49571076 TTCGGCAAAC
* *
49571086 TAACAAAGATGATGATAATTTCCTTTTTTCTTCATTTT-TTTTTGTTTCATTGTTTATTTACT
1 TAACAAAGATGATGATAATTGCCTTTTTTCTTC-TTTTGTTTTTGTTTCATTATTTATTTACT
49571148 TAACAAAGATGATGATAATTGCCTTTTTTCTTCTTTTGTTTTTGTTTCATTATTTATTTACT
1 TAACAAAGATGATGATAATTGCCTTTTTTCTTCTTTTGTTTTTGTTTCATTATTTATTTACT
49571210 TA
1 TA
49571212 TTACCCTTAC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
61 4 0.07
62 57 0.93
ACGTcount: A:0.23, C:0.11, G:0.09, T:0.57
Consensus pattern (62 bp):
TAACAAAGATGATGATAATTGCCTTTTTTCTTCTTTTGTTTTTGTTTCATTATTTATTTACT
Found at i:49574669 original size:3 final size:3
Alignment explanation
Indices: 49574644--49574709 Score: 107
Period size: 3 Copynumber: 22.3 Consensus size: 3
49574634 GTTTTTTAGT
* *
49574644 TTA TT- TTA TTA ATA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
49574691 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
49574710 CATCATACTT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
2 2 0.03
3 56 0.97
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:49576444 original size:3 final size:3
Alignment explanation
Indices: 49576436--49576470 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
49576426 TGACTAGGAG
49576436 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
49576471 TTTGATTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:49577056 original size:20 final size:20
Alignment explanation
Indices: 49577012--49577059 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
49577002 AACGTCTCTT
49577012 TATGCATT-CATTTCATGCA
1 TATGCATTACATTTCATGCA
*
49577031 TTTGCATTACATTTGCAT-CA
1 TATGCATTACATTT-CATGCA
49577051 TATGCATTA
1 TATGCATTA
49577060 AAATCCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 15 0.60
21 3 0.12
ACGTcount: A:0.27, C:0.19, G:0.10, T:0.44
Consensus pattern (20 bp):
TATGCATTACATTTCATGCA
Found at i:49579370 original size:10 final size:10
Alignment explanation
Indices: 49579344--49579370 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
49579334 AGAAAAAAGT
49579344 AAAAAACAAA
1 AAAAAACAAA
49579354 AAAAAACAAA
1 AAAAAACAAA
49579364 AAAAAAC
1 AAAAAAC
49579371 CTCTACCGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAACAAA
Found at i:49579903 original size:15 final size:15
Alignment explanation
Indices: 49579884--49579919 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
49579874 AAAAAAGATG
49579884 TGAAAAAAT-AAAAA
1 TGAAAAAATGAAAAA
*
49579898 TGGAAAAATGAAAAA
1 TGAAAAAATGAAAAA
49579913 TGAAAAA
1 TGAAAAA
49579920 TGGAAAAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (15 bp):
TGAAAAAATGAAAAA
Found at i:49579904 original size:8 final size:7
Alignment explanation
Indices: 49579887--49579927 Score: 57
Period size: 7 Copynumber: 5.7 Consensus size: 7
49579877 AAAGATGTGA
49579887 AAAAAT-
1 AAAAATG
49579893 AAAAATGG
1 AAAAAT-G
49579901 AAAAATG
1 AAAAATG
49579908 AAAAATG
1 AAAAATG
49579915 AAAAATGG
1 AAAAAT-G
49579923 AAAAA
1 AAAAA
49579928 GTAAAAATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.19
7 14 0.44
8 12 0.38
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:49579909 original size:22 final size:21
Alignment explanation
Indices: 49579887--49579936 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 21
49579877 AAAGATGTGA
49579887 AAAAATAAAAATGGAAAAATG
1 AAAAATAAAAATGGAAAAATG
49579908 AAAAATGAAAAATGGAAAAA-G
1 AAAAAT-AAAAATGGAAAAATG
49579929 TAAAAATA
1 -AAAAATA
49579937 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (21 bp):
AAAAATAAAAATGGAAAAATG
Found at i:49581438 original size:132 final size:132
Alignment explanation
Indices: 49581198--49581474 Score: 455
Period size: 132 Copynumber: 2.1 Consensus size: 132
49581188 TAGACAGCGA
* * *
49581198 AGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAAT
* * *
49581263 TCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGT
66 TCTACTTCCCTAGGCAGCAGTGGAATAAATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGT
49581328 GG
131 GG
*
49581330 AGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAAGCCAATAAT
1 AGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAAT
* *
49581395 TCTACTTCCCTGGGCAGCAGTGGAATAAATTGAAGATTACAGATCTTATCTCCCTAGGCAGTAGT
66 TCTACTTCCCTAGGCAGCAGTGGAATAAATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGT
49581460 GG
131 GG
* *
49581462 AGTAGATCGAAGA
1 AGCAGATCAAAGA
49581475 CACTAACCTT
Statistics
Matches: 134, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 134 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
AGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAAT
TCTACTTCCCTAGGCAGCAGTGGAATAAATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:49581461 original size:44 final size:44
Alignment explanation
Indices: 49581269--49581474 Score: 134
Period size: 44 Copynumber: 4.7 Consensus size: 44
49581259 TAATTCTACT
* *
49581269 TCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTC
1 TCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATC
* * ** ** * * *
49581313 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGACAGATTTTACC
1 TCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATC
* * * * * *
49581357 TCCCTGTGGTTA-CAGTGGAGTATATTGAAGCCAATA-A-TTC-TA-C
1 TCCCT-AGG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCTTATC
* *
49581400 TTCCCTGGGCAGCAGTGGAATAAATTGAAGATTACAGATCTTATC
1 -TCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATC
* * *
49581445 TCCCTAGGCAGTAGTGGAGTAGATCGAAGA
1 TCCCTAGGCAGCAGTGGAATAGATTGAAGA
49581475 CACTAACCTT
Statistics
Matches: 118, Mismatches: 34, Indels: 20
0.69 0.20 0.12
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 21 0.18
44 72 0.61
45 16 0.14
46 2 0.02
47 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
TCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATC
Found at i:49581682 original size:89 final size:88
Alignment explanation
Indices: 49581430--49581734 Score: 400
Period size: 88 Copynumber: 3.5 Consensus size: 88
49581420 TAAATTGAAG
* *
49581430 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGACACTAACCTTGCCTCCCTCG
1 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCAAAGACACTAACCTTGCCTCCCTCG
*
49581495 GTGGCAGCGGAGCAGGTT-AAAG
66 GTGGCAGCGGAGCAGGTTAAAAA
* ** * * * * * * *
49581517 A-TAGCAGATTTTGCCTTCCT-GTACTGACAGTGAAGCAAATCAAAGACATTAACCTTGCCTCCC
1 ATTA-CAGATCTTATCTCCCTAG-GCAG-TAGTGGAGCAGATCAAAGACACTAACCTTGCCTCCC
49581580 TCGGTGGCAGCGGAGCAGGTTAAAAAA
63 TCGGTGGCAGCGGAGCAGGTT-AAAAA
* * *
49581607 ATTATAGATCTTATCTCCCTAGGCAGTAGCGGAGTAGATCAAAGACACTAACCTTGCCTCCCTCG
1 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCAAAGACACTAACCTTGCCTCCCTCG
49581672 GTGGCAGCGGAGCAGGTTAAAAA
66 GTGGCAGCGGAGCAGGTTAAAAA
*
49581695 ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATC
49581735 GCAACCAGCC
Statistics
Matches: 181, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
86 3 0.02
87 15 0.08
88 92 0.51
89 51 0.28
90 17 0.09
91 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (88 bp):
ATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCAAAGACACTAACCTTGCCTCCCTCG
GTGGCAGCGGAGCAGGTTAAAAA
Found at i:49581843 original size:87 final size:87
Alignment explanation
Indices: 49581738--49581916 Score: 286
Period size: 87 Copynumber: 2.1 Consensus size: 87
49581728 GCAGATCGCA
*
49581738 ACCAGCCTTGTCTCCCTGGCAATAGTGGAGTAGGTTGAAAATAACAGATCTTACCTTCCTGTACT
1 ACCAGCCTTGTCTCCCTGGCAATAGTGGAGTAGGTTGAAAATAACAAATCTTACCTTCCTGTACT
*
49581803 AACAAAGAAGCAGATCGAAGAT
66 AACAAAGAAGCAGATCGAAGAC
* * *
49581825 ACCAGCCTTGTCTTCCTGGCAATAGTGGAGTAGGTTGAAAATAGCAAATCTTGCCTTCCTGTACT
1 ACCAGCCTTGTCTCCCTGGCAATAGTGGAGTAGGTTGAAAATAACAAATCTTACCTTCCTGTACT
** *
49581890 GGCAATGAAGCAGATCGAAGAC
66 AACAAAGAAGCAGATCGAAGAC
49581912 ACCAG
1 ACCAG
49581917 TCTTATCACC
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (87 bp):
ACCAGCCTTGTCTCCCTGGCAATAGTGGAGTAGGTTGAAAATAACAAATCTTACCTTCCTGTACT
AACAAAGAAGCAGATCGAAGAC
Found at i:49582204 original size:43 final size:43
Alignment explanation
Indices: 49582152--49582597 Score: 292
Period size: 43 Copynumber: 10.6 Consensus size: 43
49582142 TCACCTCAAG
* *
49582152 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAACATTTAA
* * * **
49582195 TCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTGACACA-CGAA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGA-ACATTTAA
* * * * * *
49582238 TCTTATTTCTCTGAGGTTGCAG-AGAGCAGA-T-CAC-CTCAA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAACATTTAA
* *
49582277 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAA
1 -TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAACATTTAA
* * * * * * **
49582321 TCCTATCTCCTTGAGGTTGAAGTGGAACGGATTG-ACATACAGA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAACATTTA-A
* * * * *
49582364 TCTTATCTCTCTGAGGTTGTAG-AGAGCAGA-T-CACA-TCAA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAACATTTAA
* *
49582403 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAA
1 -TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAACATTTAA
* * * * **
49582447 TCCTATCTCCCTGAGGTTGCAGTAGAGCGGATTG-ACATACAGA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAACATTTA-A
* ** * *
49582490 TCTTGTCTCTATGAGGTTGCAG-AGAGCAGA-T-CACA-TTAA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAACATTTAA
* * * *
49582529 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATTAA
1 -TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAA-CATTTAA
* * *
49582574 TCCTATCTCCCTGAAGTTACAGTG
1 TCTTATCTCCCTGAGGTTGCAGTG
49582598 AAGCGGATTA
Statistics
Matches: 308, Mismatches: 73, Indels: 43
0.73 0.17 0.10
Matches are distributed among these distances:
39 6 0.02
40 59 0.19
41 30 0.10
42 28 0.09
43 150 0.49
44 31 0.10
45 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (43 bp):
TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAACATTTAA
Found at i:49582297 original size:83 final size:85
Alignment explanation
Indices: 49582113--49582560 Score: 297
Period size: 83 Copynumber: 5.4 Consensus size: 85
49582103 GACATACGGA
* * * * *
49582113 TCTTATCTCTCTGAGGTTGCA--AGAGCAGA-T--CACCTCAAGTCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGACACATCAA-TCTTATCTCTCTGAGGTTGCA
* * *
49582173 GTGGAGCAGACTGAAGATTTAA-
65 GTAGAGCAGACT-CACA-TTAAG
* * *
49582195 TCCTATCTCCCTGAGGTTGCAGTGGAGCGGATTGACACA-CGAATCTTATTTCTCTGAGGTTGCA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGACACATC-AATCTTATCTCTCTGAGGTTGCA
* *
49582259 G-AGAGCAGA-TCACCTCAAG
65 GTAGAGCAGACTCACATTAAG
* * * * * *
49582278 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-AGATTTAATCCTATCTC-CTTGAGGTTGA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGACACA-TCAATCTTATCTCTC-TGAGGTTGC
* * * * *
49582341 AGTGGAACGGATTGACA-TACAG
64 AGTAGAGCAGACTCACATTA-AG
* * * * *
49582363 ATCTTATCTCTCTGAGGTTGTAG-AGAGCAGA-T--CACATCAAGTCTTATCTCCCTGAAGTTGC
1 -TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGACACATCAA-TCTTATCTCTCTGAGGTTGC
* * *
49582424 AGTGGAGCAGACTGAAGATTTAA-
64 AGTAGAGCAGACT-CACA-TTAAG
* * * * * *
49582447 TCCTATCTCCCTGAGGTTGCAGTAGAGCGGATTGACATA-CAGATCTTGTCTCTATGAGGTTGCA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGACACATCA-ATCTTATCTCTCTGAGGTTGCA
49582511 G-AGAGCAGA-TCACATTAAG
65 GTAGAGCAGACTCACATTAAG
*
49582530 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
49582561 CAGAAGAAAT
Statistics
Matches: 282, Mismatches: 58, Indels: 51
0.72 0.15 0.13
Matches are distributed among these distances:
82 32 0.11
83 126 0.45
84 25 0.09
85 29 0.10
86 61 0.22
87 9 0.03
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (85 bp):
TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGACACATCAATCTTATCTCTCTGAGGTTGCAG
TAGAGCAGACTCACATTAAG
Found at i:49582309 original size:126 final size:126
Alignment explanation
Indices: 49582089--49582689 Score: 936
Period size: 126 Copynumber: 4.8 Consensus size: 126
49582079 TTTGGCATTA
* *
49582089 CAGTGGAGCGGATTGACATACGGATCTTATCTCTCTGAGGTTGCA-AGAGCAGATCACCTCAAGT
1 CAGTGGAGCGGATTGACATACAGATCTTATCTCTCTGAGGTTGCAGAGAGCAGATCACATCAAGT
49582153 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAATCCTATCTCCCTGAGGTTG
66 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAATCCTATCTCCCTGAGGTTG
* * *
49582214 CAGTGGAGCGGATTGACACAC-GAATCTTATTTCTCTGAGGTTGCAGAGAGCAGATCACCTCAAG
1 CAGTGGAGCGGATTGACATACAG-ATCTTATCTCTCTGAGGTTGCAGAGAGCAGATCACATCAAG
*
49582278 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAATCCTATCTCCTTGAGGTTG
65 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAATCCTATCTCCCTGAGGTTG
* * *
49582340 AAGTGGAACGGATTGACATACAGATCTTATCTCTCTGAGGTTGTAGAGAGCAGATCACATCAAGT
1 CAGTGGAGCGGATTGACATACAGATCTTATCTCTCTGAGGTTGCAGAGAGCAGATCACATCAAGT
49582405 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAATCCTATCTCCCTGAGGTTG
66 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAATCCTATCTCCCTGAGGTTG
* * * *
49582466 CAGTAGAGCGGATTGACATACAGATCTTGTCTCTATGAGGTTGCAGAGAGCAGATCACATTAAGT
1 CAGTGGAGCGGATTGACATACAGATCTTATCTCTCTGAGGTTGCAGAGAGCAGATCACATCAAGT
* * * *
49582531 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAATTAATCCTATCTCCCTGAAGTTA
66 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-ATTTAATCCTATCTCCCTGAGGTTG
* * * * * *
49582593 CAGTGAAGCGGATTAACATCCAGATCTTATCTTTCTGAGGTTGTAGAGAGCAGATCGCATCAAGT
1 CAGTGGAGCGGATTGACATACAGATCTTATCTCTCTGAGGTTGCAGAGAGCAGATCACATCAAGT
* * *
49582658 CCTATCCCCCTGAAGTTGCAGTGGAGTAGACT
66 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
49582690 AGAGATAGCA
Statistics
Matches: 437, Mismatches: 35, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
124 1 0.00
125 41 0.09
126 289 0.66
127 106 0.24
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (126 bp):
CAGTGGAGCGGATTGACATACAGATCTTATCTCTCTGAGGTTGCAGAGAGCAGATCACATCAAGT
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATTTAATCCTATCTCCCTGAGGTTG
Found at i:49583979 original size:3 final size:3
Alignment explanation
Indices: 49583954--49584021 Score: 74
Period size: 3 Copynumber: 24.3 Consensus size: 3
49583944 GTTTTTTAGT
* *
49583954 TTA TT- TTA TTA ATA TTG TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
49584000 -TA TTA -TA TTA -TA TTA TAA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
49584022 CATCATACTT
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
2 10 0.19
3 44 0.81
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:49595359 original size:33 final size:33
Alignment explanation
Indices: 49595322--49595436 Score: 176
Period size: 33 Copynumber: 3.5 Consensus size: 33
49595312 AATTGTATAG
*
49595322 ACATCTTGTAATTACCCTCACACTCAGACTGAT
1 ACATCTTGTAATTACCCTCACACTTAGACTGAT
* *
49595355 ACATCTTGTAATTACCGTCACACTTAGACTGAG
1 ACATCTTGTAATTACCCTCACACTTAGACTGAT
* *
49595388 ACATCTTGTAATTACCCTAACACTTAAACTGAT
1 ACATCTTGTAATTACCCTCACACTTAGACTGAT
*
49595421 ACATCTTATAATTACC
1 ACATCTTGTAATTACC
49595437 TAATTCTCTT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 74 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.32
Consensus pattern (33 bp):
ACATCTTGTAATTACCCTCACACTTAGACTGAT
Found at i:49597278 original size:20 final size:20
Alignment explanation
Indices: 49597255--49597295 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
49597245 TATTTTTCCA
49597255 TTTTTAATTTTCCTTTCTTT
1 TTTTTAATTTTCCTTTCTTT
** *
49597275 TTTTTCTTTTTTCTTTCTTT
1 TTTTTAATTTTCCTTTCTTT
49597295 T
1 T
49597296 CTTCTTCTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTAATTTTCCTTTCTTT
Found at i:49597287 original size:16 final size:16
Alignment explanation
Indices: 49597268--49597316 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
49597258 TTAATTTTCC
*
49597268 TTTCTTTTTTTTCTTT
1 TTTCTTTCTTTTCTTT
49597284 TTTCTTTCTTTTCTTCT
1 TTTCTTTCTTTTCTT-T
49597301 TCTTC-TTCTTCTTCTT
1 T-TTCTTTCTT-TTCTT
49597317 CTTCCTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 14 0.48
17 7 0.24
18 8 0.28
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTCTTTCTTTTCTTT
Found at i:49597302 original size:3 final size:3
Alignment explanation
Indices: 49597289--49597320 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
49597279 TCTTTTTTCT
49597289 TTC TT- TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
49597321 CTCAAAACCT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:49597746 original size:30 final size:30
Alignment explanation
Indices: 49597652--49597826 Score: 117
Period size: 30 Copynumber: 5.9 Consensus size: 30
49597642 CAAGTGCAAC
* * * * *
49597652 AAAACTTTTGGGGCCAAAGTGTAATTTAT-
1 AAAAGTTTAGGGGTCAAAATGTAATTTTTG
* *
49597681 ATAAAGTTTAGGGTTCAAAATGT-ATTTTTA
1 A-AAAGTTTAGGGGTCAAAATGTAATTTTTG
*
49597711 AAAAGTTTAGGGGTCAAAATATAATTTTTG
1 AAAAGTTTAGGGGTCAAAATGTAATTTTTG
* * * * *
49597741 GAAAGTTAAGAGGTTAAAATGTAATTTTAG
1 AAAAGTTTAGGGGTCAAAATGTAATTTTTG
* * * *
49597771 GAAAG-TTAGGATGTTAAAATGT-ACTTTTG
1 AAAAGTTTAGG-GGTCAAAATGTAATTTTTG
* *
49597800 AAAAG-TTGGTGGGTCAAAATATAATTT
1 AAAAGTTTAG-GGGTCAAAATGTAATTT
49597827 AAAAAATGAA
Statistics
Matches: 114, Mismatches: 26, Indels: 11
0.75 0.17 0.07
Matches are distributed among these distances:
29 48 0.42
30 66 0.58
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.37
Consensus pattern (30 bp):
AAAAGTTTAGGGGTCAAAATGTAATTTTTG
Found at i:49598211 original size:76 final size:75
Alignment explanation
Indices: 49597923--49602935 Score: 2496
Period size: 76 Copynumber: 64.9 Consensus size: 75
49597913 ATTTTTTATA
* * * * * ** * * * * *
49597923 TGAAAAACAGAAATCGAATATAGCTCGGCGTACGACCCCAAGCTCAACTCTCCTCTCGAATTATC
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
*
49597988 AGTTG-TACTT
66 AGTTGAT-TTT
* * * * * * *
49597998 TGAAAAACAGATATTGAAAACACCTCAGAGTGCGACCCAAGGCTCAACTCACCTCGCGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
*
49598063 AGTTGATTTC
66 AGTTGATTTT
*
49598073 TGAAAAAAAACATAAATTGAAAAATACCTC-GACGTGTGACCTGAGGCTCAACTCACCTCTCGCA
1 TG---AAAAACATAAATTG-AAAATACCTCAG-CGTGTGACCCGAGGCTCAACTCACCTCTCGCA
49598137 TTATGAGTTGATTTTT
61 TTATGAGTTGA-TTTT
* * * * * * *
49598153 TGAAAATCATAAATTCAAAATACCTCAGCGTGCGACTCGAGACTCAACTCATCGCTCGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
49598218 AGTTGATTTT
66 AGTTGATTTT
* * * * * ** *
49598228 TGAAAAATAGAAATTTAAAAAAATACCTCGGCATGTG-TTCGAGGCTCAAGTCACCTCTCGCATT
1 TGAAAAACATAAA-TT--GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
* *
49598292 ATGAGTTCATTTA
63 ATGAGTTGATTTT
** * * * * *
49598305 AAAAAAACAGAAATTCAAAAATACATCAGCGTGTG-CCCGACGCTCAACTCACCTCTCACATTAT
1 TGAAAAACATAAATT-GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTAT
* *
49598369 AAGTTGA-CTT
65 GAGTTGATTTT
** * * * * * **
49598379 CAAAAAAAATAGAAATCGAAAATACCTCGGCGTGTGACCCGAGGCCCAACTCACCTTTCATATTA
1 TGAAAAACAT--AAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
**
49598444 CAAGTTGATTTTTT
64 TGAGTTGA--TTTT
* * *
49598458 TGAAAAACATAAATTGAAAACTACCTCGGCGTGTGACCCGAGGATCAACTCACATCTCGCATTAT
1 TGAAAAACATAAATTGAAAA-TACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTAT
49598523 GAGTTGATTTTT
65 GAGTTGA-TTTT
* * * *
49598535 TGAAAATCATAAATTGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGTATTAAG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
*
49598600 AATTGATTTT
66 AGTTGATTTT
* * * ** * *
49598610 T-AAAAA-ATAGATATTTACAAAAATACCTCGGCATGTG-TTCGACGCTCAACTCACTTCTCGCA
1 TGAAAAACATA-A-A-TT--GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCA
* *
49598672 TTATGAGTTCATTGT
61 TTATGAGTTGATTTT
* * * *
49598687 TGAAAAGACAAAAATTGAAAAAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCACATT
1 TGAAAA-ACATAAATTG--AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
* *
49598751 AAGAGTTGACTTT
63 ATGAGTTGATTTT
* * * * *
49598764 TGAAAAAACAGAAATTTAAAATACCTTC-GTGTGTGACCCAAGGCTCAACTCACCTGTCGCATTA
1 TG-AAAAACATAAATTGAAAATACC-TCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49598828 TGAATTGATTTTTT
64 TGAGTTGA--TTTT
* * * * *
49598842 TTAAAAATCATAAATTGAAAAATACCTCAGTGTGTGACCCGAGGCTTAACTCACATCTCACATTA
1 TGAAAAA-CATAAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49598907 TAAGTTGATTTTT
64 TGAGTTGA-TTTT
* * * *
49598920 TGAAAATCATAAATTAAAAATACCTCAGCGTGAGACTCGAGGCTCAACTCACCTCTCGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
49598985 AGTTGATTTT
66 AGTTGATTTT
* * * ** * *
49598995 TGAAAAACATAAATTTAGAAAATACATCGGCATGTG-TTCGAGCCTCAACTCACGTCTCGCATTA
1 TGAAAAACATAAA-TT-GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49599059 TGAGTTTATTTT
64 TGAGTTGATTTT
* * * * * *
49599071 TGAGAACACA-AATATTCAAAAATTCCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTTGCATT
1 TGA-AAAACATAA-ATT-GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
49599134 ATGAGTTGATTTT
63 ATGAGTTGATTTT
* * * * * *
49599147 TGAAAAAAACGAAATTGAAAATACTTCAGCGTATGACCCGAGGCTCAACTCAGCTCTTGCATTAT
1 TGAAAAACA-TAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTAT
*
49599212 GAGTAGATTTTT
65 GAGTTGA-TTTT
* * * ** ** *
49599224 TTAAAATCATAAATTGAAAATCCCTCAGTTTCCGACCCGAGGCTCAACTCACCTCTCACATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
49599289 AGTTGATTTT
66 AGTTGATTTT
* * * * * * * ** * *
49599299 TGAAAAAGAGAAATTTAAAAAATAACTCGGCATCTG-TTCGACGCTCAACTCACCGCTCGCATTA
1 TGAAAAACATAAA-TT-GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49599363 TGAGTTGATTTT
64 TGAGTTGATTTT
* * * * * *
49599375 TGAAAAA-ATAGAAATTGAAAAATACCACGGCGTGT-CCCCGAGGCACAACTCACCTCTCGTACT
1 TGAAAAACAT--AAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
*
49599438 ATGAGTTGAATTT
63 ATGAGTTGATTTT
* *
49599451 TGAAAAAACAGAAATTGAAAATACCTCTA-CGTGTGACCCGAGGCTCAACTCACCTCTCACATTA
1 TG-AAAAACATAAATTGAAAATACCTC-AGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49599515 TGAGTTGATTTTTT
64 TGAGTTGA--TTTT
* * *
49599529 TGAAAAACATAAATTGAAAAATACCTCAGCGTGCGACCCGAGGCTCGAGC-CACCGCTCGCATTA
1 TGAAAAACATAAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTC-AACTCACCTCTCGCATTA
49599593 TGAGTTGATTTTT
64 TGAGTTGA-TTTT
* * * ** ** * * * *
49599606 TGAAAATCACAAATTGAAAATATCTCAATGTGCAACCCGAGGCTCAAATCACCTTTTGCATTAAG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
*
49599671 AATTGATTTT
66 AGTTGATTTT
* * * * * * * ** **
49599681 TGAAAAATAGATATTTAAAAAAATACCCCGGCATGTG-TTCGACTCTCAACTCACCTCTCGCATT
1 TGAAAAACATA-AATT--GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
*
49599745 ATGAGTTCATTTT
63 ATGAGTTGATTTT
* * * *
49599758 AGGAAAAACAGAAATTGAAAATACCTC-GACGTGTGACCCAAGGATCAACTCACCTCTCGCATTA
1 -TGAAAAACATAAATTGAAAATACCTCAG-CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49599822 TGACTTGATTTTT
64 TGAGTTGA-TTTT
* * *
49599835 GTGAAAAACATAACTTGAAAAATACTTCAGCGTGTGACCCGAGGCTCAACTCACATCTCGCATTA
1 -TGAAAAACATAAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49599900 TGAGTTGATTTTT
64 TGAGTTGA-TTTT
* ** ** * * *
49599913 TGAAAATCATAAATTGAAAATACCTCAGCGTGCAACCTAAGGCTTAACTCACCTCTCGTACTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
49599978 AGTTGATTTT
66 AGTTGATTTT
* * * * ** * * *
49599988 TGAAAAACATAAATTTAAGAAATATCTCGGCATGTG-TTCGAGCCTCAACTCATCTCTTGCATTA
1 TGAAAAACATAAA-TTGA-AAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49600052 TGAGTTGATTTT
64 TGAGTTGATTTT
* * *
49600064 TGAAAACACAGAAATTGAGAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGTATTA
1 TGAAAA-ACATAAATTGA-AAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49600128 TGAGTTGATTTT
64 TGAGTTGATTTT
* * * * * *
49600140 TGAAAAAAAAAACA-AAATTGAAAATAACTAAGGGTGTGACTCGAGGCTCAACTCAGCTCTTGCA
1 TG-----AAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCA
*
49600204 TTATGAGTAGATTTT
61 TTATGAGTTGATTTT
* * * * *
49600219 TTAAAAATCATAAATTGAAAATAGCTTAGCGTGCGACCCGAGGCTCAATTCACCTCTCGCATTAT
1 TGAAAAA-CATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTAT
49600284 GAGTTGATTTT
65 GAGTTGATTTT
* * * * * * **
49600295 TCACAAACAGAAATTCAAAAAATACCTCGGCATGTG-TTCGAGGCTCAACTCACCTCTCGCATTA
1 TGAAAAACATAAATT--GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49600359 CGAGTTGATTTT
64 TGAGTTGATTTT
* * * *
49600371 TGAAAAA-ATAGAAATTGAAAAATACCACTGCGTGT-TCCCGAGGCTCAACTCACCGCTCGCATT
1 TGAAAAACAT--AAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
49600434 ATGAGTTGATTTTT
63 ATGAGTTGA-TTTT
* * * * * ** ** *
49600448 TGGAAATCATAAATTGAAAATATCTCAACATACGACCTAAGGCTCAACTCACCTCTTGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
* ***
49600513 TGTTCGA-CGC
66 AGTT-GATTTT
* ** * * ** ** ** * * *** * ***
49600523 TCAACTCACCT--CTTGTATTATGAGTTCATTGT-TGAAAAAAACAGAAATTGAAAAAACCTCAG
1 TGAA-AAACATAAATTG-AAAAT-ACCTCAGCGTGTG-----ACCCGAGGCTCAACTCACCT---
*** * ****
49600585 CGTGCGACCCCA-G-GCTCGACCCA
55 C-T-CG-CATTATGAG-TTGATTTT
** **** * *** ** ***** **** * * *** ** *
49600608 CCACTCGCATTATGAGTTGATTTTTTTAAAATCATAAATTGAAAATA-TCTCAGCGGGCGACCCG
1 TGAAAAACA-TA--AATTGA---AAAT-ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCG
*** * ** * *
49600672 -AGGCTCAACTCACATTT
59 CATTATGAGTTGA-TTTT
* ** * * ***** * *
49600689 TGCATTAAGAA-TTGATTTTTGAAAAATAGATATCTAAAAAAAT-ACCTCTGCATGTGTTCGATG
1 TG-A--AA-AACAT-A-AATTG---AA-A-ATACCTCAGCGTGTGACC-C-G-A-G-GCTC-A-A
* * * * **
49600752 CTCAACTCAC-C-TCT-CGCATTATGAGTTCA
48 CTCACCTCTCGCAT-TATG-AGT-TGA-TTTT
***** * * * * ** * *
49600781 TTTTTGAAAAAAATAGAAATTGAAAATACCTCGGCACGTGACCCAAGGCTCAACTCACCTCTTGC
1 TGAAAAACATAAATTGAAA------ATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGC
49600846 ATTATGAGTTGATTTTT
60 ATTATGAGTTGA-TTTT
* * * * * *
49600863 GTGAAAAACATAACTTGAAAAATACTTCAGCGTGTGACCCAAGGCTCAATTCACATCTTGCATTA
1 -TGAAAAACATAAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49600928 TGAGTTAATTTTT
64 TGAGTTGA-TTTT
* *
49600941 TGAAAATCATAAATTGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
49601006 AGTTGATTTT
66 AGTTGATTTT
* * * ** *
49601016 TGAAAAACATAAATTTAAAAAATACCTCGGCATGTG-TTCG-GGCCTCAATTCACCTCTCGCATT
1 TGAAAAACATAAA-TT-GAAAATACCTCAGCGTGTGACCCGAGG-CTCAACTCACCTCTCGCATT
49601079 ATGAGTTGATTTT
63 ATGAGTTGATTTT
* * * *
49601092 TGAAAACACAGAAATTGAAAAATACCTCAGCGTATG-CCCGAGGGTCAACTCACCTCTCGCACTA
1 TGAAAA-ACATAAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49601156 TGAGTTGATTTT
64 TGAGTTGATTTT
* * * * ** * * * *
49601168 TGAAAAACATAAATTTAAGAAATATCTCGGCATGTG-TTCGAGCCTCAACTCATCTTTTGCATTA
1 TGAAAAACATAAA-TTGA-AAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49601232 TGAGTTGATTTT
64 TGAGTTGATTTT
* * *
49601244 TGAAAACACAGAAATTGAGAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGTATTA
1 TGAAAA-ACATAAATTGA-AAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49601308 TGAGTTGATTTT
64 TGAGTTGATTTT
* * * * * * *
49601320 TGAAAAA-A-AAA--AAAAATAACTAAGGGTGTGACTCGAGGCTCAACTCAGCTCTTGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
*
49601381 AGTAGATTTT
66 AGTTGATTTT
* * * * * *
49601391 TTAAAAATCATAAATTGAAAATAGCTTAGCGTGCGACCTGAGGCTCAATTCACCTCTCGCATTAT
1 TGAAAAA-CATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTAT
49601456 GAGTTGATTTT
65 GAGTTGATTTT
* * * * * * **
49601467 TCACAAACAGAAATTCAAAAAATACCTCGGCATGTG-TTCGAGGCTCAACTCACCTCTCGCATTA
1 TGAAAAACATAAATT--GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49601531 CGAGTTGATTTT
64 TGAGTTGATTTT
* * * *
49601543 TGAAAAA-ATAGAAATTGAAAAATACCACTGCGTGT-TCCCGAGGCTCAACTCACCGCTCGCATT
1 TGAAAAACAT--AAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
49601606 ATGAGTTGATTTTT
63 ATGAGTTGA-TTTT
* * * * * ** ** *
49601620 TGGAAATCATAAATTGAAAATATCTCAACATACGACCTAAGGCTCAACTCACCTCTTGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
* ***
49601685 TGTTCGA-CGC
66 AGTT-GATTTT
* ** * * ** ** ** * * * *** * ***
49601695 TCAACTCACCT--CTTGCATTATGAGTTCA-TTTTTGAAAAAACAGAAATTGAAAAAACCTCAGC
1 TGAA-AAACATAAATTG-AAAAT-ACCTCAGCGTGTG----ACCCGAGGCTCAACTCACCT---C
*** * ****
49601757 GTGCGACCCCA-G-GCTCGACCCA
56 -T-CG-CATTATGAG-TTGATTTT
** **** * *** ** ***** **** * *
49601779 CCACTCGCATTATGAGTTGATTTTTTTTAAATCATAAATTGAAAATA-TCTCAGTGGGCGACCCG
1 TGAAAAACA-TA--AATTGA----AAATACCTCAGCGTGTGACCCGAGGCTCA-------ACTC-
* * *
49601843 AGGCTCAACTCACATTTTGCA-TTAAGAATTGATTT
51 A--C-C-TCTCGCATTATG-AGTT--G-A-T--TTT
* * * * * * ** *
49601878 TGAAAAATAGATATCTAAAAAAATACCTCCGCATGTG-TTCGATGCTCAACTCACCTCTCGCATT
1 TGAAAAACATAAAT-T--GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
*
49601942 ATGAGTTCATTTT
63 ATGAGTTGATTTT
* * ** * *
49601955 TGAAAAAAAATAGAAATTGAAAATACCTCGGCACGTGACCCAAGGCTCAACTCACCTCTTGCATT
1 TG-AAAAACAT--AAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
49602020 ATGAGTTGATTTTT
63 ATGAGTTGA-TTTT
* * * * * *
49602034 GTGAAAAACATAACTTGAAAAATACTTCAGCGTGTGACCCAAGGCTCAATTCACATCTTGCATTA
1 -TGAAAAACATAAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49602099 TGAGTTAATTTTT
64 TGAGTTGA-TTTT
* *
49602112 TGAAAATCATAAATTGAAAATACCTCAGCGTGCGACCCGAGGCTCAACTCACCTCTCGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
49602177 AGTTGATTTT
66 AGTTGATTTT
* * * * * *
49602187 TGAAAAACATAAATTTAAAAAATACCTCGGCATGTG-CTCGAGCCTCAATTCACCTCTCGCATTA
1 TGAAAAACATAAA-TT-GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49602251 TGAGTTGATTTT
64 TGAGTTGATTTT
* * * *
49602263 TGAAAACACAGAAATTGAAAAATACCTCAACGTGTG-CCCGAGGGTCAACTCACCTCTCGTATTA
1 TGAAAA-ACATAAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
49602327 TGAGTTGATTTT
64 TGAGTTGATTTT
* * ** ** * * * * *
49602339 TGAAAAAAACA-AAATTGAAAATAACTAATTGTGTGACTAGAGGTTCAACCCAGCTCTTGCATCA
1 TG--AAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49602403 TGAGTAGATATTT
64 TGAGTTGAT-TTT
* * * * * * * *
49602416 TTAAAATCATGAATTGAAAATAGCTTAGCGTGCGACCTGAGGCTCAACTCGCCTCTCGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
*
49602481 AGTTGATTTC
66 AGTTGATTTT
* * * * * * * **
49602491 TCACAAACAGAAATTCAAAAAATGCCTCGGCATGTG-TTCGAGGCTCAACTCACCTCTCGCATTA
1 TGAAAAACATAAATT--GAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
*
49602555 TGAGTTAATTTT
64 TGAGTTGATTTT
* * * * * **
49602567 TGAAAAAAATAGAAATTGAAAAATACCACGGCGTGT-TCCCAAGGCTCAACTCACCTCTTACATT
1 TGAAAAACAT--AAATTG-AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
*
49602631 ATGAGTTGACTTT
63 ATGAGTTGATTTT
* * *
49602644 TGAAAAAACAGAAATTGAAAATACCTCAGTGTGTGATCCGAGGCTCAACTCA-CTCCTCGCATTA
1 TG-AAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCT-CTCGCATTA
49602708 TGAGTTGATTTT
64 TGAGTTGATTTT
* * * * * ** *
49602720 TTAAAATCATAAATTGAAAATAGCTTAGTGTGTGACTTGAGGCTCAACTCGCCTCTCGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
49602785 AGTTGATTTT
66 AGTTGATTTT
* * * * * * * *
49602795 TCACAAA-A-AAATTCAAAAAATACCTC-GACATATGACCCGAAGCTCGACTCACCGCTCGCATT
1 TGAAAAACATAAATT--GAAAATACCTCAG-CGTGTGACCCGAGGCTCAACTCACCTCTCGCATT
49602857 ATGAGTTGATTTTT
63 ATGAGTTGA-TTTT
* * * * ** * *
49602871 TGAAAATCATAAATTGGAAATATCTCAGCATACGACCTGAGGCTCGACTCACCTCTCGCATTATG
1 TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
49602936 TGTTCGATGC
Statistics
Matches: 3755, Mismatches: 922, Indels: 521
0.72 0.18 0.10
Matches are distributed among these distances:
70 13 0.00
71 42 0.01
73 12 0.00
74 31 0.01
75 506 0.13
76 1729 0.46
77 594 0.16
78 418 0.11
79 172 0.05
80 27 0.01
81 6 0.00
82 15 0.00
83 38 0.01
84 33 0.01
85 12 0.00
86 10 0.00
87 12 0.00
88 17 0.00
89 8 0.00
90 5 0.00
91 19 0.01
92 7 0.00
93 4 0.00
94 3 0.00
95 13 0.00
96 3 0.00
97 2 0.00
98 1 0.00
99 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.29
Consensus pattern (75 bp):
TGAAAAACATAAATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
AGTTGATTTT
Found at i:49599116 original size:152 final size:151
Alignment explanation
Indices: 49597964--49622068 Score: 13987
Period size: 152 Copynumber: 157.0 Consensus size: 151
49597954 ACGACCCCAA
* * * * * * * * *
49597964 GCTCAACTCTCCTCTCGAATTATCAGTTG-TACTTTGAAAAACAGATATTGAAAACACCTCAGAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * *
49598028 TGCGACCCAAGGCTCAACTCACCTCGCGCATTATGAGTTGATTTCTGAAAAAAAACATAAATTGA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG---AAAAACATAAATTTA
* *
49598093 -AAAATACCTCGACGTGTGACCTGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* *
49598118 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTCAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * * * * *
49598183 TGCGACTCGAGACTCAACTCATCGCTCGCATTATGAGTTGATTTTTGAAAAATAGAAATTTAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTT-AGA
* **
49598248 AAATACCTCGGCATGTGTTCGAG
129 AAATACCTCGGCGTGTGCCCGAG
* * *** * *
49598271 GCTCAAGTCACCTCTCGCATTATGAGTTCATTTAAAAAAAACAGAAATTCAAAAATACATCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATT-AAAAATACCTCAGCG
* * * * ** * * *
49598336 TGTG-CCCGACGCTCAACTCACCTCTCACATTATAAGTTGA-CTTCAAAAAAAATAGAA-ATCGA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAGA
49598398 AAATACCTCGGCGTGTGACCCGAG
129 AAATACCTCGGCGTGTG-CCCGAG
* * ** ** * *
49598422 GCCCAACTCACCTTTCATATTACAAGTTGATTTTTTTGAAAAACATAAATTGAAAACTACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATT-AAAAATACCTCAG
* * *
49598487 CGTGTGACCCGAGGATCAACTCACATCTCGCATTATGAGTTGATTTTTTGAAAATCATAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTA
* *
49598550 GAAAATACCTCAGCGTGCGACCCGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * *
49598576 GCTCAACTCACCTCTCGTATTAAGAATTGATTTTT-AAAAA-ATAGATATTTACAAAAATACCTC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-A-A-TT--AAAAATACCTC
* * ** * * * * *
49598639 GGCATGTG-TTCGACGCTCAACTCACTTCTCGCATTATGAGTTCATTGTTGAAAAGACAAAAATT
61 AGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATT
* * *
49598703 GAAAAAATACCTCGGCATGTGCCCGAG
125 TAGAAAATACCTCGGCGTGTGCCCGAG
* * * * * *
49598730 GCTCAACTCACCTCTCACATTAAGAGTTGACTTTTGAAAAAACAGAAATTTAAAATACCTTC-GT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTAAAAATACC-TCAGC
* * * * *
49598794 GTGTGACCCAAGGCTCAACTCACCTGTCGCATTATGAATTGATTTTTTTTAAAAATCATAAATTG
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAA-CATAAATTT
* *
49598859 A-AAAATACCTCAGTGTGTGACCCGAG
126 AGAAAATACCTCGGCGTGTG-CCCGAG
* * * * *
49598885 GCTTAACTCACATCTCACATTATAAGTTGATTTTTTGAAAATCATAAATTAAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* *
49598950 TGAGACTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
* * **
49599015 AATACATCGGCATGTGTTCGAG
130 AATACCTCGGCGTGTGCCCGAG
* * * * * *
49599037 CCTCAACTCACGTCTCGCATTATGAGTTTATTTTTGAGAACACA-AATATTCAAAAATTCCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA-AAAACATAA-ATT-AAAAATACCTCAG
* * * *
49599101 CATGTG-CCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGATTTTTGAAAAAAACGAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACA-TAAATTTA
* * *
49599163 GAAAATACTTCAGCGTATGACCCGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * * * * * **
49599189 GCTCAACTCAGCTCTTGCATTATGAGTAGATTTTTTTAAAATCATAAATTGAAAATCCCTCAGTT
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
** * * * *
49599254 TCCGACCCGAGGCTCAACTCACCTCTCACATTATGAGTTGATTTTTGAAAAAGAGAAATTTAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
* * * ** *
49599319 AATAACTCGGCATCTGTTCGAC
130 AATACCTCGGCGTGTGCCCGAG
* * *
49599341 GCTCAACTCACCGCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATTGAAAAATACCACGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT-AAAAATACCTCAG
* * * * * *
49599405 CGTGT-CCCCGAGGCACAACTCACCTCTCGTACTATGAGTTGAATTTTGAAAAAACAGAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTA
**
49599467 GAAAATACCTCTACGTGTGACCCGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
*
49599493 GCTCAACTCACCTCTCACATTATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAATACCTCAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATT-AAAAATACCTCAG
* * * * *
49599558 CGTGCGACCCGAGGCTCGAGC-CACCGCTCGCATTATGAGTTGATTTTTTGAAAATCACAAA-TT
63 CGTGTGACCCGAGGCTC-AACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTT
* *** **
49599621 -GAAAATATCTCAATGTGCAACCCGAG
126 AGAAAATACCTCGGCGTG-TGCCCGAG
* * * * * * * * * *
49599647 GCTCAAATCACCTTTTGCATTAAGAATTGATTTTTGAAAAATAGATATTTAAAAAAATACCCCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATT--AAAAATACCTCAG
* ** ** * * *
49599712 CATGTG-TTCGACTCTCAACTCACCTCTCGCATTATGAGTTCATTTTAGGAAAAACAGAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTT-TGAAAAACATAAATTTA
* *
49599774 GAAAATACCTCGACGTGTGACCCAAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * *
49599800 GATCAACTCACCTCTCGCATTATGACTTGATTTTTGTGAAAAACATAACTTGAAAAATACTTCAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTT-TGAAAAACATAAATT-AAAAATACCTCAG
* *
49599865 CGTGTGACCCGAGGCTCAACTCACATCTCGCATTATGAGTTGATTTTTTGAAAATCATAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTA
* ** **
49599928 GAAAATACCTCAGCGTGCAACCTAAG
127 GAAAATACCTCGGCGTG-TGCCCGAG
* * * * *
49599954 GCTTAACTCACCTCTCGTACTATGAGTTGATTTTTGAAAAACATAAATTTAAGAAATATCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTAA-AAATACCTCAGC
* ** * * * * *
49600019 ATGTG-TTCGAGCCTCAACTCATCTCTTGCATTATGAGTTGATTTTTGAAAACACAGAAATTGAG
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATTTAG
49600083 -AAATACCTCGGCGTGTGCCCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * * *
49600106 GCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAAAAACA-AAATTGAAAATAACTA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-----AAAAACATAAATTAAAAATACCTC
* * * * * *
49600170 AGGGTGTGACTCGAGGCTCAACTCAGCTCTTGCATTATGAGTAGATTTTTTAAAAATCATAAA-T
61 AGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-CATAAATT
* ** *
49600234 T-GAAAATAGCTTAGCGTGCGACCCGAG
125 TAGAAAATACCTCGGCGTGTG-CCCGAG
* * * * *
49600261 GCTCAATTCACCTCTCGCATTATGAGTTGATTTTTCACAAACAGAAATTCAAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATT--AAAAATACCTCAGC
* ** * *
49600326 ATGTG-TTCGAGGCTCAACTCACCTCTCGCATTACGAGTTGATTTTTGAAAAA-ATAGAAATT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAG
* * *
49600388 AAAAATACCACTGCGTGTTCCCGAG
128 -AAAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49600413 GCTCAACTCACCGCTCGCATTATGAGTTGATTTTTTGGAAATCATAAATTGAAAATATCTCAACA
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
** ** * * **
49600478 TACGACCTAAGGCTCAACTCACCTCTTGCATTATGTGTTCGACGCTCAACTCACCTCTTGTATTA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTT-GA---T----T----T-TTG-AAAA
** ** * * * * *** **** *
49600543 TGAGTTCATTGTTGAAAAAAAC-AGAAAT-TGAAAAAA
116 ACA-TAAATT-TAGAAAATACCTCGGCGTGTGCCCGAG
* * * ** * *** *
49600579 CCTCAGCGTGCGACCCCAGGCTCGACCCACCACTCGCATTATGAGTTGATTTTTTTAAA-AT-CA
1 GCTCAAC-T-C-A--CC--TCTCG---CATTA-T-G-AGT-TGA--T--TTTTGAAAAACATAAA
* ** * * * * * * * *
49600642 -TAAATTGAAAATATC-TCAGCG-G--GCGA--CCCGAGGCTCA--ACTCACATTTTGCA-TTAA
48 TTAAA---AATACCTCAGC-GTGTGACCCGAGGCTC-A-ACTCACCTCTCGCATTATG-AGTT--
*** * * * ** * * ** *
49600697 GAATTGATTTTTGAAAAATAGATATCTAAAAAAATACCTCTGCATGTGTTCGAT
104 G-ATT--TTTGAAAAACATAAATTTAGAAAA---TACCTCGGCGTGTGCCCGAG
* * * *
49600751 GCTCAACTCACCTCTCGCATTATGAGTTCATTTTTGAAAAAAATAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
** * * * *
49600816 ACGTGACCCAAGGCTCAACTCACCTCTTGCATTATGAGTTGATTTTTGTGAAAAACATAACTTGA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTT-TGAAAAACATAAATTTA
* * *
49600881 -AAAATACTTCAGCGTGTGACCCAAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * * * *
49600906 GCTCAATTCACATCTTGCATTATGAGTTAATTTTTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* *
49600971 TGCGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
* **
49601036 AATACCTCGGCATGTGTTCG-G
130 AATACCTCGGCGTGTGCCCGAG
* *
49601057 GCCTCAATTCACCTCTCGCATTATGAGTTGATTTTTGAAAACACAGAAATTGAAAAATACCTCAG
1 G-CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATT-AAAAATACCTCAG
* * *
49601122 CGTATG-CCCGAGGGTCAACTCACCTCTCGCACTATGAGTTGATTTTTGAAAAACATAAATTTA-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAG
* * **
49601185 AGAAATATCTCGGCATGTGTTCGAG
128 A-AAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49601210 CCTCAACTCATCTTTTGCATTATGAGTTGATTTTTGAAAACACAGAAATTGAGAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATT-AAAAATACCTCAGC
*
49601275 GTGTG-CCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAA-A-AAA---A-A
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
* * *
49601333 AAATAACTAAGG-GTGTGACTCGAG
129 AAATACCT-CGGCGTGTG-CCCGAG
* * * * * * *
49601357 GCTCAACTCAGCTCTTGCATTATGAGTAGATTTTTTAAAAATCATAAATTGAAAATAGCTTAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-CATAAATTAAAAATACCTCAGCG
* * * * * * * *
49601422 TGCGACCTGAGGCTCAATTCACCTCTCGCATTATGAGTTGATTTTTCACAAACAGAAATTCAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
* **
49601487 AATACCTCGGCATGTGTTCGAG
130 AATACCTCGGCGTGTGCCCGAG
* * *
49601509 GCTCAACTCACCTCTCGCATTACGAGTTGATTTTTGAAAAA-ATAGAAATTGAAAAATACCACTG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT-AAAAATACCTCAG
* * * *
49601573 CGTGT-TCCCGAGGCTCAACTCACCGCTCGCATTATGAGTTGATTTTTTGGAAATCATAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTA
* ** * ** **
49601635 GAAAATATCTCAACATACGACCTAAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * *** * ** * * * ** **
49601661 GCTCAACTCACCTCTTGCATTATGTGTTCGA-CGCTCAACTCACCT--CTTGCATTATGAGTTCA
1 GCTCAACTCACCTCTCGCATTATGAGTT-GATTTTTGAA-AAACATAAATT-AAAAAT-ACCTCA
** * * * *** * *** * * ** **** *** * ** *
49601723 -TTTTTGAAAAAACAGAAATTGAAAAAACCTC-AGC-GTGCGACCCCAGGCTCGACCCACCACTC
62 GCGTGTG----ACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA-AAAACA-T-
** ** * *** ***** * **** *
49601785 GCATTATGAGTTGATTTTTTTTAAATCATAAATTGAA
120 AAATT-T-AG-AAAATACCTCGGCGT-GT-GCCCGAG
** * * * * *** * ** * * * **
49601822 AAT-ATCTCA-GTGGGCGACCCGAGGCTCAACTCACATTTTGCATTAAGAA-TTGATTTTGAAAA
1 GCTCAACTCACCT---C-TCGC-ATTATGAGTTGA-TTTTTG-A--AA-AACAT-AAATT--AAA
* * ** *
49601884 ATAGATATCTAAAAAAATACCTCCGCATGTG-TTCGATGCTCAACTCACCTCTCGCATTATGAGT
53 ---------------AATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGT
* * * ** *
49601948 TCATTTTTGAAAAAAAATAGAAATT-GAAAATACCTCGGCACGTGACCCAAG
103 TGATTTTTG-AAAAACATA-AATTTAGAAAATACCTCGGCGTGTG-CCCGAG
* * *
49601999 GCTCAACTCACCTCTTGCATTATGAGTTGATTTTTGTGAAAAACATAACTTGAAAAATACTTCAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTT-TGAAAAACATAAATT-AAAAATACCTCAG
* * * * * *
49602064 CGTGTGACCCAAGGCTCAATTCACATCTTGCATTATGAGTTAATTTTTTGAAAATCATAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTA
* *
49602127 GAAAATACCTCAGCGTGCGACCCGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
*
49602153 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* * * * * *
49602218 ATGTG-CTCGAGCCTCAATTCACCTCTCGCATTATGAGTTGATTTTTGAAAACACAGAAATTGA-
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATTTAG
**
49602281 AAAATACCTCAACGTGTGCCCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * * * * **
49602305 GGTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAACA-AAATTGAAAATAACTAATT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG--AAAAACATAAATTAAAAATACCTCAGC
** * * * * * * * * *
49602369 GTGTGACTAGAGGTTCAACCCAGCTCTTGCATCATGAGTAGATATTTTTAAAATCATGAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAACATAAATTTAG
* ** * *
49602432 AAAATAGCTTAGCGTGCGACCTGAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * * * * * *
49602457 GCTCAACTCGCCTCTCGCATTATGAGTTGATTTCTCACAAACAGAAATTCAAAAAATGCCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATT--AAAAATACCTCAGC
* ** * * *
49602522 ATGTG-TTCGAGGCTCAACTCACCTCTCGCATTATGAGTTAATTTTTGAAAAAAATAGAAATT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAG
* * *
49602585 AAAAATACCACGGCGTGTTCCCAAG
128 -AAAATACCTCGGCGTGTGCCCGAG
** * * * *
49602610 GCTCAACTCACCTCTTACATTATGAGTTGACTTTTGAAAAAACAGAAATTGAAAATACCTCAGTG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTAAAAATACCTCAGCG
* * *
49602675 TGTGATCCGAGGCTCAACTCA-CTCCTCGCATTATGAGTTGATTTTTTAAAATCATAAA-TT-GA
65 TGTGACCCGAGGCTCAACTCACCT-CTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
* ** * **
49602737 AAATAGCTTAGTGTGTGACTTGAG
129 AAATACCTCGGCGTGTG-CCCGAG
* * *
49602761 GCTCAACTCGCCTCTCGCATTATGAGTTGATTTTTCACAAA-A-AAATTCAAAAAATACCTC-GA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATT--AAAAATACCTCAG-
* * * * * *
49602823 CATATGACCCGAAGCTCGACTCACCGCTCGCATTATGAGTTGATTTTTTGAAAATCATAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTA
* * * * ** *
49602886 GGAAATATCTCAGCATACGACCTGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * ** * * * * ** **
49602912 GCTCGACTCACCTCTCGCATTATGTGTTCGA-TGCTCAACTCACCTCTCGCATT-ATGATA--TC
1 GCTCAACTCACCTCTCGCATTATGAGTT-GATTTTTGAA--AAAC-AT-AAATTAAAAATACCTC
** * * *** * * * ** * * *
49602973 A-TTTTTGATCAAACAGAAATTGAAAAT-ACCTC-GGCATGTGACCCAAGGCTCAACTCACCTCT
61 AGCGTGTGA-C---CCGAGGCT-CAACTCACCTCTCGCAT-T-A--TGA-G-T----TGA-TTTT
* ** ** ** * * *
49603035 CGCATTATGAGTTGATTTTTTTGAAAAACATAACCTGAAAAATACTTCAGCGTGTGACCTGAG
110 TG-A--AAAACAT-A-AATTTAGAAA---AT-A-C---------C-TCGGCGTGTG-CCCGAG
* * * * *
49603098 GCTCAACTCACATATCACATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * * *
49603163 TGCGACCCGAGGCTCAAGTCACCTCTCGCATCATGAGTTGATTTTT-AGAAAACAGAAATTAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA-AAAACATAAATTTAGA
* **
49603227 AAATACCTCGGCATGTGTTCGAG
129 AAATACCTCGGCGTGTGCCCGAG
* * * * *
49603250 CCTCAACTAACCTCTCGCATTATGAGTTGATATTTGAAAAA-ATAGAAATTTAAAAATACCACGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAA-TTAAAAATACCTCAG
* * ** * * **
49603314 CATTTG-CCCGATTCTCAACTCACCTCTTGCATTATGAGTTGAGTTTTGAAAAA-ATAGAAAATA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTA
* * *
49603377 -AAAATACATCGACGTGTGACTCGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * * * *
49603402 GGTCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATCGA-AAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTT-TGAAAAAC-ATAAATTAAAAATACCTCAGC
* * * * *
49603466 GTGTGACCCGAGGTTCAACTCACCTCTTGCACTATGAGTTGATTTTTGAAAAACAAAAATTTAAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
* * ** *
49603531 AAATACCTCAGCATGTGTTCTAG
129 AAATACCTCGGCGTGTGCCCGAG
* * * *
49603554 GCTCAACTCATCTCTCGCATTATGAGTTGATTTTTCAAAAACTAGAAATTGAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAC-ATAAATT-AAAAATACCTCAGC
* * * **
49603619 GTGTG-CCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGACTTTCGAAAAAACAGCAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAG
* *
49603681 AAAACACCTCAGCGTGTGACCCGAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * * * * * *
49603706 GCTCAACTCACCTCTCGCATTATGAATTGATTTTTAAAAAATATATATTTAAAAATACCACGGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTAAAAATACCTCAGCG
** * * *
49603771 TGTG-TTCGACGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAA-ATAAAAATT-GA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT-AAATTTAG-
*
49603833 AAAACACCTCGGCGTGTGCCCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * * * *
49603857 GCTCAACTCACCAT-T--CA-AAAGAGTTGACTTTTG-AAAA-A-AAATTGAAAATACCTCTGCG
1 GCTCAACTCACC-TCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* *
49603915 TGTGACTCGAGGCTCAACT-AGCCTCTCGCATTATGAGTTGATTTTTTTGAAGAACATAAA-TT-
65 TGTGACCCGAGGCTCAACTCA-CCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATTTA
49603977 GAAAATTACCTCGGCGTGTGACCCGAG
127 GAAAA-TACCTCGGCGTGTG-CCCGAG
* * * * * *
49604004 ACTCAACTCACATCTCGCATTATGAGTTGATTTTTTAAAACTCATAAATTGAAAATACCTCTGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATTAAAAATACCTCAGCG
* ** *
49604069 T-TCGACCCGAGGCTCAACTCACCTCTCGCTTTATGAGTTGA-TTTTGAAAAGTATAAATTTACA
65 TGT-GACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
* **
49604132 AAATACCTCGGCATGTGTTCGAG
129 AAATACCTCGGCGTGTGCCCGAG
* * *
49604155 CCTGAACTCACCTCTCGCATTATGATTTGATTTTTGGAAAAAC-TGAAATTGAAAAATACCTC-G
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAACAT-AAATT-AAAAATACCTCAG
* * * *
49604218 CCGTGTG-CACGACGCTCAACTCACCTC-CTGCATTATGAGTTGATTTTGGAAAAA-ATAGAAAT
63 -CGTGTGACCCGAGGCTCAACTCACCTCTC-GCATTATGAGTTGATTTTTGAAAAACATA-AATT
*
49604280 T-GAAAATACCTCGGCGTGTGACCCAAG
125 TAGAAAATACCTCGGCGTGTG-CCCGAG
* * * * * * *
49604307 GCACAACTAATCTCTCGCATTATGAGTTGATTTTTTGAAAATCATTAATTGAAAATACCTCAGCT
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * * *
49604372 TGCGACCTGAGGCTCAACTCACCACTCGCATTATGAGTTGATTTTTGAAAAAACAGGAATTTTAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACA-TAAATTTAG
* * **
49604437 AAAATACCTCTGCATGTGTTCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * * * ** * ** **
49604461 GCTCAAATCACCTCTCGCA-TATGAGTTGA-TTTTCAAATCACCTCTCGCATTATGAGTTGATTT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA--AAC-AT-AAATTA-AAAAT-ACCT
* ***** *** **** * * * ** * ** * * *
49604524 TAG-AAAAAACAAAATTGAAAAAACCCACGGCGTGTGCCCGA-GCTCAACTCACCTCTTGCATTA
60 CAGCGTGTGACCCGA--GGCTCAACTCAC--C-TCT-CGC-ATTATGAGTTGA-TTTTTG-A--A
* * ** * * *** **
49604587 GAA-GTGATTTTTGAAAAACAAAAATTTATAAATTACTTCGGTAGGTGTTCGA-
114 AAACAT-AAATTT--AG-----------A-AAA-TACCTCGGCGTGTGCCCGAG
* * *
49604639 GCTCAACTCA-CTCTCGCATTATGAGTTGATTTTTGAAAAAACAAGAAATTGAAAAAT-TCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAC-ATAAATT-AAAAATACCTCAG
* * * *
49604702 CGTGT--CCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGACTTTTGAACAA-ATAGAAATT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTA
* * * * *
49604763 -AAAATACTTCGGCATCTGACTGAG
127 GAAAATACCTCGGCGTGTGCCCGAG
* * * * *
49604787 GCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAAAAACA-AAATTGAAAAT-CGTC-GG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTAAAAATACCTCAGC
* * *
49604849 GTGTGACCCGAGGCTCAACTCAACTCTCGCATTATGATGATT-TTTTTTGAAAATCATAAA-TT-
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGA-G-TTGATTTTTGAAAAACATAAATTTA
* * *
49604911 GAAAATACCTCAGCGTGCGACCTGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* *
49604937 GCTCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGAC-TAAAATTGAAAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACAT-AAATT--AAAAATACCTCA
* ** * * *
49605001 GCGTGTG-CCCGAGGCTCAACTCACCTCTCACATTAAAAGTTGAATTTTGAAAAAACAGAAATTC
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTT
*
49605065 A-AAAATACCTTGGCGTGTGACCCGAG
126 AGAAAATACCTCGGCGTGTG-CCCGAG
* * * * * *
49605091 G-TTAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAAATATAAATTGAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATT-AAAAATACCTCAG
* * * * * * * *
49605155 CGTGT-ATCGGCA-CCTTAACTCACATCTCGCACTATGAGTTGATTTTTTTAAAATCATAAA-TT
63 CGTGTGACCCG-AGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTT
* * **
49605217 A-AAAATATCTCAGCGTGCAACCCGAG
126 AGAAAATACCTCGGCGTG-TGCCCGAG
* * * * * *
49605243 GCTCAACTCACCTCTCGCATTATGA-ATGATTTTT-TAAAA-ATATATAAAAAATACCAT-GGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTAAAAATACC-TCAGCG
** * ** ** * * *** * ** ** * * *
49605304 TGTG-TTCGACGCTCAACTCA--T-T-G-AAAAACACCTCGGCGTGTGCCGAGGC-TCAACTCA-
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGA-GTTGATTTTTG-AAAAACATAAATTTAG
** * *** * ** *
49605361 CCACT-CAAAGGAGT-TGACTTTTGAA
128 AAAATACCTCGGCGTGTG-C--CCGAG
**** * * * * * * * *** * ** * ** ** * ***
49605386 AAAAAATTGAAAATCCTGT-GC-GTGTGACTCGA-GGCTCAACTAGCCCTCGCATTATGAGTTGA
1 GCTCAACT---CA-CCTCTCGCATTATGAGTTGATTTTTGAA--AAACAT-AAATTAAAAATACC
***** ** * ** *** * * * * * * * * *
49605448 TTTTTTTGAAAAACATAAATTGAAAAGT-ACCTCGGCGC-GTACCCGAGACTCAACTCACATCTC
59 TCAGCGTG-TGACCCGAGGCT--CAACTCACCTC-TCGCATTA--TGAG--T----TGA-TTTTT
** ** ** ** ** * **** * *
49605511 GCATTATGAGTTGATTTTTAAAACTCAAAAT-TGAAAATACCTC-TG
111 G-AAAAACA-TAAATTTAGAAAA-T--ACCTCGGCGTGTGCC-CGAG
* * ** * * *** * * * **** * * **
49605556 CGTTCGAC-CGA-GGCTC-AACTCA-CCCTCGCTTTATG-AGTTGAT--TTTGAAAAGTAGAAAT
1 -GCTCAACTC-ACCTCTCGCA-TTATGAGTTGATTTTTGAAAAACATAAATT-AAAA--A-TACC
* ***** **** * * * **** * * ****
49605614 TTAAAAAAT-ACCTC--GGCATGTGTTCGAGC-CT-GAACTCACCTCTCGCA-TTATG-ATTTGA
59 TCAGCGTGTGACC-CGAGGC-TCAACTC-ACCTCTCGCA-TTATGAGTTG-ATTTTTGAAAAACA
* * *
49605672 T--TTTTGGAAAAACTGAAATTGAAAAATACCTC-GCTGTGTGCACGAC
119 TAAATTT------------A--G-AAAATACCTCGGC-GTGTGCCCGAG
* * * * *
49605718 ACTCAACTCACCTCCCGCATTATGAGTTGATTTTGGAAAAA-ATAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* * * * * *
49605782 GTGTGACCCAAGGCACAACTAATCTCTCGCATTATGA-TTGATTTTTTGAAAATCATTAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTAG
* * * * *
49605844 AAAATACCTCAGCTTGCGACTGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * *
49605868 GCTCAACTCACCACTCGCATTATGAGTTGA-TTTTGAAAAACAGAAATTTAAAAAATACCTCTGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** * * *
49605932 ATGTG-TTCGAGGCTCAAATCACCTCTCGCATTATGAGTTGATTTTAGAAAAAACA-AAAATT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAG
* *
49605994 AAAAAACTCACGGCGTGTGCCCGAG
128 AAAATAC-CTCGGCGTGTGCCCGAG
* * * * *
49606019 GCTCAACTCACCTCT-GCATTATAAGTT-AATTTTGAAAAACAAAAATTTATAAATACTTC-G-G
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTAAAAATACCTCAGCG
*** * **
49606080 TAGGTG-TTTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATGGA
65 T--GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTA
* *
49606144 -AAAATATCTCGGCGTGTGCCCAAG
127 GAAAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49606168 GCTCAACTCACCTCTCGTATTATCAGTTGACTTTTTGAACAAATAGAAATTGAAAATACTTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAA-AAACATAAATTAAAAATACCTCAGC
* * * * *
49606233 ATCTAACCCGA-GCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAAAAACATAAA-TT-
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTTA
49606295 GAAAAT-CCGTCGGCGTGTGACCCGAG
127 GAAAATACC-TCGGCGTGTG-CCCGAG
* * *
49606321 GCTCAACTCAACTCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * *
49606386 TGCGACCTGAGGCTCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGAC-TAAAATTGAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACAT-AAATTTAG
49606450 AAAATACCTCGGCGTGTGCCCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * ** * * **
49606474 GCTCAACTCACCTTTCACATTAAAAGTTGAATTTTGAAAAAACAGAAATTCAAAAATACCTTGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATT-AAAAATACCTCAGC
* * * ** *
49606539 GTGTGACCCGAGGCTCAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAATTATAAATTGA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTTA
**
49606604 -AAAATACCTCGGCGTGTGATCG-G
127 GAAAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49606627 CACCTTAACTCACATCTCGCACTATGAGTTGATTTTTTTTAAAATCATAAATTAAAAATATCTCA
1 --GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATTAAAAATACCTCA
** * * * *
49606692 GCGTGCAACCCGAGGCTCAACTCACCTCTCGCATTATGAATTGATTTTTTAAAAATATATATTTA
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTA
* * * ** *
49606757 AAAAATACCACGGCATGTGTTCGAA
127 GAAAATACCTCGGCGTGTGCCCGAG
* * * * *
49606782 GCTCAACTCACCTCTTGTATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAACACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATT-AAAAATACCTCAGC
* * * *
49606847 GTGTG-CCCGAGGCTCAACTCACCACT--CA-AAGGAGTTGACTTTTG-AAAA-A-AAA-TT-GA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
** *
49606903 AAATACCTATGCGTGTGACTCGAG
129 AAATACCTCGGCGTGTG-CCCGAG
* * *
49606927 GCGCAACT-AGCCTCTCGCATTATGAGTTGATTTTTTGAAAAACATAAATTGAAAATTACCTCGG
1 GCTCAACTCA-CCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATT-AAAAATACCTCAG
* * *
49606991 CGTGTGACCCGAGACTCAACTCACATCTCGCATTATGAGTTGATTTTT-AAAACTCATAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATTTA
*
49607053 GAAAATACCTCTGCGT-TCGACCCGAG
127 GAAAATACCTCGGCGTGT-G-CCCGAG
* * ** * *
49607079 GCTCAACTCACCTCTCACTTTATGAGTTGATTTTTGAAAAGTAGAAATTAAAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATT--AAAAATACCTCAGC
* ** * * * * *
49607144 ATGTG-TTCGAGCCTGAACTCACCTATCGCATTATGATTTGATTTTTGGAAAAAC-TGAAATTGA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAACAT-AAATTTA
* * *
49607207 -AAAATACCTCGCCGTGTGCACGAC
127 GAAAATACCTCGGCGTGTGCCCGAG
* * * *
49607231 GCTCAACTCACCTCCCGCATTATGAGTTGA-TTTGGAAAAA-ATAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* * * *
49607294 GTGTGA-CCAAGGCTCAACTCATCTCTCGCATTATGAGTTGATTTTTTTGAAAATCATTAA-TT-
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATTTA
* * *
49607356 GAAAATACCTCAGCGTGCGACCTGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * *
49607382 GCTCAATTCACCACTCGCATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAATACCTCTGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** * * * *
49607447 ATGTG-TTCGAGGCTCAAATCACCTCTCACATTATGAGTTGATTTTAGAAAAAACA-AAAATT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAG
* *
49607509 AAAAAACCCACGGCGTGTGCCCGAG
128 AAAATA-CCTCGGCGTGTGCCCGAG
* * * *
49607534 GCTCAACTCACCTCTTGCATTA-GAAGTTGATTTTTGAAAAACAAAAATTTATAAATTACTTC-G
1 GCTCAACTCACCTCTCGCATTATG-AGTTGATTTTTGAAAAACATAAA-TTA-AAAATACCTCAG
** *
49607597 -GTAGGTG-TTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATT
63 CGT--GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATT
* *
49607660 GA-AAAATATCTCGGCGTGTGCCCGAG
125 TAGAAAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49607686 GCTCAACTCACCTCTCGTATTATGAGTTGACTTTTGAACAAATAGAAATTAAAAATACTTCGGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA-AAACATAAATTAAAAATACCTCAGCG
* * * * *
49607751 TCTGACCTGAGGCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAAAAACGTAAA-TT-G
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTTAG
49607814 AAAAT-CCGTCGGCGTGTGACCCGAG
128 AAAATACC-TCGGCGTGTG-CCCGAG
* * *
49607839 GCTCAACTCAACTCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * *
49607904 TGCGACCTGAGGCTCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGAC-TAAAATTGAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACAT-AAATTTAG
*
49607968 AAAATACCTCGGCGTGTGCTCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* ** * * * **
49607992 GCTCAACTCACCTCTCACATTAAAAGTTGAATTTTGAAAAAACAGAAATTCAAAATACCTTGGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTAAAAATACCTCAGCG
* * * * * *
49608057 TGTGACCCGAGGTTCAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAAATATAAATTGA-
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTTAG
**
49608121 AAAATACCTCGGCGTGTGATCG-G
128 AAAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49608144 CACCTTAACTCACATCTCGCACTATGAGTTGATTTTTTTAAAATCATAAATTAAAAATATCTCAG
1 --GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAG
** * * * * *
49608209 CGTGCAACCCGAGGCTCAACTCACCTCTCGCATTATGAATTGATTTTTTAAAAATATATATTTAA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAG
* ** *
49608274 AAAATACCAT-GGCATGTGTTCGAC
128 AAAATACC-TCGGCGTGTGCCCGAG
* * * * * *
49608298 GCTCAACTCACCTCTCGTATTATGAGTTGACTTTTGAAAAAACAGAAATTGGAAAACACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATT-AAAAATACCTCAGC
* * * * *
49608363 GTGTG-CCCGAGGCTCAACTCACCACT--CA-AAGGAGTTAACTTTTG-AAAA-A-AAA-TT-GA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
* *
49608419 AAATTCCT-GTGCGTGTGACTCGAG
129 AAATACCTCG-GCGTGTG-CCCGAG
* *
49608443 GCTCAACT-AGCCTCTCGCATTATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAGTACCTCG
1 GCTCAACTCA-CCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATT-AAAAATACCTCA
* * * *
49608507 GCGTGTGACCCGAGACTCAACTCACATCTCGCATTATGAGTTGATTTTTTAAAACTCATAAA-TT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATTT
*
49608571 -GAAAATACCTCTGCGT-TCGACCCGAG
126 AGAAAATACCTCGGCGTGT-G-CCCGAG
* ** * *
49608597 GCTCAACTCACCTCTCGCTTTATGAGTTGATTTTTGAAAAGTAGAAATTTAAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** * * * *
49608662 ATGTG-TTCGAGCCTGAACTCACCTCTCGCATTATGATTTGATTTTTGGAAAAAC-TGAAATTGA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAACAT-AAATTTA
* *
49608725 -AAAATACCTC-GCTGTGTGCACGAC
127 GAAAATACCTCGGC-GTGTGCCCGAG
* * * * *
49608749 ACTCAACTCACCTCCCGCATTATGAGTTGATTTTGGAAAAA-ATAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* * * * * *
49608813 GTGTGACCCAAGGCACAACTAATCTCTCGCATTATGAGTTGATTTTTTGAAAATCATTAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTAG
* * * *
49608876 AAAATACCTCAGCTTGCGACCTGAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * * *
49608901 GCTCAACTCACCACTCGCACTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAATACCTCTGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** * * *
49608966 ATGTG-TTCGAGGCTCAAATCACCTCTCGCATTATGAGTTGATTTTAGAAAAAACA-AAAATT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAG
* *
49609028 AAAAAACTCACGGCGTGTGCCCGAG
128 AAAATAC-CTCGGCGTGTGCCCGAG
* * * * * * *
49609053 GCTCAACTCACCTCTTGCATTATAAGTTAAGTTTTGAAAAACAAAAATTTATAAATTACTTC-G-
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTA-AAAATACCTCAGC
*** * **
49609116 GTAGGTG-TTTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATGG
64 GT--GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTT
*
49609180 A-AAAATATCTCGGCGTGTGCCCGAG
126 AGAAAATACCTCGGCGTGTGCCCGAG
* * * * * * * * *
49609205 GCTCAACTCACCTCTCGTATTATCAGTTGACTTTTGAACAAATAGAAATTGAAAATACTTCGGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA-AAACATAAATTAAAAATACCTCAGCG
* * * *
49609270 TCTAACCCGAGGCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAAAAACATAAA-TT-G
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTTAG
49609333 AAAAT-CCGTCGGCGTGTGACCCGAG
128 AAAATACC-TCGGCGTGTG-CCCGAG
* * *
49609358 GCTCAACTCAACTCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * *
49609423 TGCGACCTGAGGCTCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGAC-TAAAATTGAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACAT-AAATTTAG
49609487 AAAATACCTCGGCGTGTGCCCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * ** * * * **
49609511 GCTCAACTCACCTTTCACATTAAAAGTTGAATTTTGAAAAAACAGAAATTCAAAATACCTTGGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTAAAAATACCTCAGCG
* * * * ** *
49609576 TGTGACCTGAGGCTCAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAATTATAAATTGA-
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTTAG
**
49609640 AAAATACCTCGGCGTGTGATCG-G
128 AAAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49609663 CACCTTAACTCACATCTCGCACTATGAGTTGATTTTTTAAAATCATAAATT-AAAATATCTCAGC
1 --GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTAAAAATACCTCAGC
** * * * * *
49609727 GTGCAACCCGAGGCTCAACTCACCTCTCGCATTATGAATTGATTTTTTAAAAATATATATTTAAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
* * ** *
49609792 AAATACCACGGCATGTGTTCGAA
129 AAATACCTCGGCGTGTGCCCGAG
* * * *
49609815 GCTCAACTCACCTCTCGTATTATGAGTTGA-TTTTGAAAAAACAGAAATTGAAAAACACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATT-AAAAATACCTCAGC
* * * *
49609879 GTGTG-CCCGAGGCTCAACTCACCACT--CA-AAGGAGTTGACTTTTG-AAAA-A-AAA-TT-GA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
** *
49609935 AAATACCTATGCGTGTGACTCGAG
129 AAATACCTCGGCGTGTG-CCCGAG
* * * *
49609959 GCGCAACT-AGCCTCTCGCATTATGAGTTAATTTTTTTGAAAAACATAAATTGAAAATTACCTCG
1 GCTCAACTCA-CCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATT-AAAAATACCTCA
* * *
49610023 GCGTGTGACCCGAGACTCAACTCACATCTCGCATTATGAGTTGATTTTT-AAAACTCATAAA-TT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATTT
*
49610086 -GAAAATACCTCTGCGT-TCGACCCGAG
126 AGAAAATACCTCGGCGTGT-G-CCCGAG
* * ** * *
49610112 GCTCAACTCACCTCTCACTTTATGAGTTGATTTTTGAAAAGTAGAAATTAAAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATT--AAAAATACCTCAGC
* ** * * * * *
49610177 ATGTG-TTCGAGCCTGAACTCACCTATCGCATTATGATTTGATTTTTGGAAAAAC-TGAAATTGA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAACAT-AAATTTA
* * *
49610240 -AAAATACCTCGCCGTGTGCACGAC
127 GAAAATACCTCGGCGTGTGCCCGAG
* * * *
49610264 GCTCAACTCACCTCCCGCATTATGAGTTGATTTTGGAAAAA-ATAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* * * *
49610328 GTGTGACCCAAGGCTCAACTCATCTCTCGCATTATGAGTTGATTTTTTGAAAATCATTAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTAG
* * *
49610391 AAAATACCTCAGCGTGCGACCTGAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * * *
49610416 GCTCAATTCACCACTCGCATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAATACCTCTGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** * * * *
49610481 ATGTG-TTCGAGGCTCAAATCACCTCTCACATTATGAGTTGATTTTAGAAAAAACA-AAAATT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAG
* *
49610543 AAAAAACCCACGGCGTGTGCCCGAG
128 AAAATA-CCTCGGCGTGTGCCCGAG
** * * * *
49610568 GCTCAACTCACCTCTTTCATTATAAGTTGATTTTTGAAAAACAAAAATTTATAAATTACTTC-G-
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTA-AAAATACCTCAGC
** * * *
49610631 GTAGGTG-TTCGAGGTTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAAATTG
64 GT--GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTT
*
49610695 A-AAAATATCTCGGCGTGTGCCCGAG
126 AGAAAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49610720 GCTCAACTCACCTCTCGTATTATGAGTTGACTTTTGAACAAATAGAAATTGAAAATACTTCGGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA-AAACATAAATTAAAAATACCTCAGCG
* * *
49610785 TCTGACCCGAGGCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAAAAACATAAA-TT-G
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTTAG
*
49610848 AAAAT-CCGTCGACGTGTGACCCGAG
128 AAAATACC-TCGGCGTGTG-CCCGAG
* * *
49610873 GCTCAACTCAACTCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* ** * * *
49610938 TGCGACTTGAGGCTCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGACAAAAATTGA-A
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACATAAATTTAGA
**
49611002 CAAATAGATCGGCGTGTGCCCGAG
129 -AAATACCTCGGCGTGTGCCCGAG
* * * * * * **
49611026 GCTCAACTCACCTCTCACATTAAGAGTTTAATTTTGAAAAAACAGAAATTCAAAATACCTTGGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTAAAAATACCTCAGCG
* * * * *
49611091 TGTGACCCGAGGCTCAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAAATATAAATTGA-
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTTAG
*
49611155 AAAATACCTCGGCGTGTGACCG-G
128 AAAATACCTCGGCGTGTGCCCGAG
* * * * * * ** *
49611178 CACCTCAACTCACATCTCGCACTATGAGTTGATTTTTTTAAAATCATAAATAAAAAATATGTCAA
1 --GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAG
** * * * *
49611243 CGTGCAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAATTTTGAAAAATATATATTTAA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAG
* * ** *
49611308 AAAATACCTCAGCATGTGTTCTAG
128 AAAATACCTCGGCGTGTGCCCGAG
** * * * * *
49611332 G-TCCAACTCACCTCTCTTATTATTAATTAATTTTTGAAAAAACAAAAATTCAAAAAATACCTCG
1 GCT-CAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATT--AAAAATACCTCA
* * * * * *
49611396 GCATGTG-CCTGAGGCTCAACTCACCTCTAGCATTATGAGTTGACTTTTGAAAAAAAATAGAAAT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATA-AATT
*
49611460 T-GAAAATACCTCGGCGTGTGACCTGAG
125 TAGAAAATACCTCGGCGTGTG-CCCGAG
* * * *
49611487 GTTCAACTTACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATTGAAAATTCCTC-G-
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* *
49611549 GAGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTGTTTGAAAATCATAAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT-TTTGAAAAACATAAATTTAG
* * *
49611612 AAAATTCCTCAGCGTGCGACCCGAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * **
49611637 GCTCAACTCACCTCTTGCATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAATACCTTGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** * * * * *
49611702 ATGTG-TTCGCGGCTCAACTCACCTCTCGCATTATGATTTGATTTTTAAAATAACAGAAATTGA-
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA-AACATAAATTTAG
* *
49611765 AAAATACCTTGGCGTGTGCCCGAT
128 AAAATACCTCGGCGTGTGCCCGAG
* * * *
49611789 GCTCAACTCACCTCTCGCATTATTAGTTGATTTTTGCAAAAACAGAAATTGAAAATACCTCGGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTAAAAATACCTCAGCG
* * * * ** * *
49611854 TGTGACACGAGGCTCAACTCAGCTCTCGGATTATGAGTTGGTTTTTTCTAAATCATAAA-CT-GA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTT-GATTTTTGAAAAACATAAATTTAGA
**
49611917 AAATACCT--TAGTGTGCAACCTGAG
129 AAATACCTCGGCGTGTGC--CC-GAG
* ** * *
49611941 GCTCAACTCATCTCTCGCATGCTGAGTTGATCTTTT-AAAAATAGAAATTTAAAATATACCTTGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAACATAAA-TTAAAA-ATACC-T-C
* * * *
49612005 A-CGTGT---TCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATTTTTGGAAAAATAGAAATT
61 AGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAACATAAATT
* *
49612066 GA-AAAATACCACGGCGTGTGCCCGAG
125 TAGAAAATACCTCGGCGTGTGCCCGAG
* ** * * * * *
49612092 GCTCAGCTCACCTCTAACATTATGAGTTGACTTTTGAAAAA-ATAGAAATTGAAAATTCCTCGGT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
** * * * *
49612156 GTGTGACCTAAGGCTCAACTCACCTCTCACATTATGAGTTAATTTTTTTGAACAACATAAATTGA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATTTA
* * *
49612221 -AAAAGACCTCGGCGTGTGACCCAAT
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * * *
49612246 GCTCAACTCACGTCTTGCATTACGAGTTGATTTGTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * * ** *
49612311 TGCGACCTGAGGCTCAACTCAACTTTCGCATTATGAGTTGATTTTTGGAAAACCGAAATTTAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
* * **
49612376 AATACCTTGGCATGTG-TTGAAG
130 AATACCTCGGCGTGTGCCCG-AG
* *
49612398 GCTCAACTCACCTCTCGCATTATAAGTTGATTTTTGAAAAA-ATAGAAATTGAAAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT--AAAAATACCTCA
* *
49612462 GCGTGTG-CCCGAGGCTCAACTGACCTCTCGCATTATGAGTTGATTTTTG-AAAACATAGAAATT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTT
*
49612525 -GAAAAATACCTCGGCGTGTGCCCGAA
126 AG-AAAATACCTCGGCGTGTGCCCGAG
* * * *
49612551 GCTCAACACACCTCTCGCATTATGAGTTGATTTTTG-AAAACAACGAAATTGAAAATACCTTAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAC-A-TAAATTAAAAATACCTCAGC
* * * *
49612615 GTGTGACCCGAGGCTGAACTCAGCTCTCGCATTATGAGTAGACCTTTTT-AAAATCATAAA-TT-
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATTTA
** * * *
49612677 GAAAATACCTTAGTGTGAGACCTGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * *
49612703 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAGAGAAATTTAAAAAATACATCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* * * * *
49612768 ATGT--CTTCAAGGCTCAACTCACATCTCGCATTATGAGTTGATTTTTGAAAAA-ATAAAAATT-
64 GTGTGAC-CCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT-AAATTTA
*
49612829 GAAAAATACCACGGCGTGTGCCCGAG
127 G-AAAATACCTCGGCGTGTGCCCGAG
* * * * *
49612855 GCACAACTTACCTCTCGCATTATAAGTTGACTTTTGAAAAA-ATAGAAATTGAAAATACCTC-GA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAG-
* * * *
49612918 CGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTCTTTGAAAAACATAAATTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAACATAAATTT
* *
49612983 A-AAAATACCTTGGCGTGCGACCCGAG
126 AGAAAATACCTCGGCGTGTG-CCCGAG
* * * * * * *
49613009 GCTCGACCCACCGCTCGCATTATGAGTTGATTTTTTGAAAATCATCAATTCAAAATATCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * * * * * * * * *
49613074 TGCGACCTGATGCTCAACTCACCTCTTGCATTAAGAATTCATTTTTGAAAAATAGATATCTAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAAT-TTAGA
* ** *
49613139 AAATACCTCGGCATGTGTTCGAC
129 AAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49613162 GCTCAACTCACCTCTCACATTATGAGTTCATTTTTGGAAAACCAAAAATTGAAAATACCCCGGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAACATAAATTAAAAATACCTCAGCG
* * * * **
49613227 TGTGACCCAAGGCTCAACTCACATCTTGCATTATGAGTTGATTTTTCTAAAAA-ATTATAACAT-
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAACA-TA-AATTTA
* * *
49613290 GAAAAAGACTTCAGCGTGTGACCCGAG
127 G-AAAATACCTCGGCGTGTG-CCCGAG
* * * *
49613317 GCTCAAGTCACATCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * *
49613382 TGCGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTGTTGAAAAAAATTAAATTTAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACA-TAAATTTAGA
* **
49613447 AAATACCTCGGCATGTGTTCGAG
129 AAATACCTCGGCGTGTGCCCGAG
* *
49613470 CCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAACATAGAAATTAAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT-AAAAATACCTCAG
* * * * *
49613534 CATGTG-CCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAACGAAA-CTA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACA-TAAATTTA
* * *
49613597 -AAAATAACTCAGCGTGTGACTCGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * ** * * * *
49613622 GCTCAACTTATCTCTCGCATTATGAGTAGATTTTTTTTTAAATCATAAATTGAAAATAGCTTAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATTAAAAATACCTCAGC
* * * * * *
49613687 GTGCG-CCCTGAGGCTTAACTCACCTCTAGCATTATGAGTTGATTTTTCACAAACAAAAATTTA-
64 GTGTGACCC-GAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAG
* * **
49613750 AAAATACTTCGGCATGTGTTCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* *
49613774 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAATAGAAATTGAAAAATACCAC-G
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT-AAAAATACCTCAG
* * * * * **
49613838 CCGTGT-TCCCGAGGCCCAACTCAACTCACGCATTATGAGTTGACTTTTGAAAAA-ATAGAAACT
63 -CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTT
* *
49613901 -GAAAATACCTCGGTGTGTGATCCGAG
126 AGAAAATACCTCGGCGTGTG-CCCGAG
* *** *
49613927 GCCCAACTCA-CTCCTCTTTTTATGAGTTGATTTTTTTCGAAAAACATAAATTGAAAAATATCTC
1 GCTCAACTCACCT-CTCGCATTATGAGTTGA--TTTTT-GAAAAACATAAATT-AAAAATACCTC
* * * * * * *
49613991 GGCATATGACCCGAAGCTCGACTCACCGCTCGCATTATGAGTTGATTTTTTGAAAATCATAAA-T
61 AGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATT
* * * ** *
49614055 T-GAAAATATCTCAGCATACGACCTGAG
125 TAGAAAATACCTCGGCGTGTG-CCCGAG
* * * * *
49614082 CCTCAACTCACCTCTCGCATTAAGAATTGATTTTTGAAAAACAGATAATTAAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATT-AAAAATACCTCAGC
* ** ** * *
49614147 ATGTG-TTCGACACTCAACTCACCTCTCGCATTATGAGTTCATTTTTGACAAAACAGAAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA-AAAACATAAATTTAG
*
49614209 AAAATACCTCGGCGTGTGACCCAAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * * *
49614234 GCTCAACTCACCTCTCACATTATGAGTTGATTTTTTTGAAAAACATAACTTGAAAAATACTTTAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATT-AAAAATACCTCAG
* * * * * * * * * *
49614299 TGTGTGGCCTGAGGCTCAACTCACATATCACATTATAAGTTCATTTTTTGAAAATCGTAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTA
* * * *
49614362 GAAAATACCACAGCGTGCGACCTGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * ** *
49614388 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAAGAAATTGAATGCATACTTCAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATT-AA-AAATACCTCAGC
* ** * * * ** * *
49614453 ATGTG-TTCTAGGCTCAACTGACCTCACGCATTATGAGTTGATTTTAAAAAAAAATAGAAATT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAG
* * *
49614516 AAAAATACCACGGCGTGTGCCCAAT
128 -AAAATACCTCGGCGTGTGCCCGAG
* *
49614541 GCTCAACTCACCTCTCGCATTATGAGTTGACTTTTGAAAAA-ATAGAAATTAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* * * * * * *
49614605 TTGTGACCCGAGACTCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATCATAAA-GT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTT-TGAAAAACATAAATTTAG
* *
49614668 AAAATACCTCAGCGTGCGACCCGAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * *
49614693 GTTCAACTCACCTCTCACATTATGAGTTGATTTTTGAAAAACAAAAATTTAAAAAATACCTC-GA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAG-
* **** * * *
49614757 CATGTG-TTTTAGGCTCAACTCATCTCTCGCATTATGAGTTGATTTTTGAAAAACTAGAAATTGA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAC-ATAAATTTA
* *
49614821 -AAAATACCCCAGCGTGTGCCCGAG
127 GAAAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49614845 GCTCAACTCACATCTTGCATTATGAGTTGACTTTAGAAAAAACAGAAATTGAAAATACCTCGGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTAAAAATACCTCAGCG
* * * * *
49614910 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAATTGGTTTTTGAAAAATATATATTTAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
* * ** *
49614975 AATACCACGGCATGTGTTCGAC
130 AATACCTCGGCGTGTGCCCGAG
* ** * * ** *
49614997 GCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAACATCACCTCTCAAAAGAGTTGA-
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACAT-AAAT-TAAAAATACCTCAG
* * * * ** *** * * ** * * * * *
49615061 CTTTTTAAAAAGCAAAAATTGAAAAT-ACCT-AGGCAGGTGT-TCGCGGCTCAACTCACCTCTCG
63 C-GTGT---GACCCGAGGCT-CAACTCACCTCTCGCA--T-TAT-G-AG-T----TGA-TTTTTG
** ** ** ** * * *** * *
49615123 CATTATGATTTGATTTTTAAAATAAC-AGAAATTGAAAAATACCTTGGCGTG
112 -AAAAACA-TAAATTTAGAAAATACCTCG-GCGTG-----TGCC----CGAG
* * * * * * ** *
49615174 TGCCCGATGCTCAACTCAC-C-TCTCGCATTA-TTAGTTGATTTTTGAAAA-AGTAGAAATTGAA
1 -GCTC-A-ACTCACCTCTCGCAT-T---ATGAGTT-GAT--TTTTGAAAAACA-T--AAATTAAA
* * * * *
49615235 AATACCTCGGCGTGTGACCTGAGGCTCAACTCAGCTCTCGCATTATGAGTTGACTTTTTGGAAAT
53 AATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAA
* * * * *
49615300 CATAAA-TT-GAAAATACATCAGTGTGCGGCCTGA-
117 CATAAATTTAGAAAATACCTCGGCGTG-TGCCCGAG
* * * * * * * ** *
49615333 GCTCAAATCACCTCTCGCATGATGAGTAGATTTTTGAAAAATAGAAATTTATAGATACCTTGGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTAAAAATACCTCAGCG
* ** *
49615398 CGTG-TTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATT-GA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAG-
* *
49615460 AAAATACCACGGAGTGTGCCCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * * *
49615484 GCTCAACTCACCTCTCACATTATGAGTTGACTTTTGAAAAA-ATAGAAATTGAAAATATCTCAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* ** * *
49615548 GTGTGACCCGAGGCTTAACTCACCTCTTTCATTATGAGTTGATTTTTTTGAAAGACATAAATTGA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATTTA
49615613 -AAAATACCTCGGCGTGTGACCCGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
** * * * * *
49615638 GCTCAACTCACGACTCACATTATGAGTTGATTTGTTGAAAATCGTAAATTGAAAATATCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAACATAAATTAAAAATACCTCAGCG
** * * *
49615703 TACGACCCGAGGCTCAACTCAGCTCTTGCATTATGAGTTGATTTTTGAAAAACAGAAATTTA-AA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
* * ***
49615767 AATTACCTTGGCATGTGTTTGAG
130 AA-TACCTCGGCGTGTGCCCGAG
* * *
49615790 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGTG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * * * * * * *
49615855 TGCGACCTGAGGCTCAACTCAGCTCTAGCATGATGGGTTGATTTTTGACAAATAGAAATTTAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
** * ** **
49615920 AATAGATTGGCACGTGTTCGAG
130 AATACCTCGGCGTGTGCCCGAG
* * * * *
49615942 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAACAATAGAAATTGAAAAATACCACGGT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA-AACATAAATT-AAAAATACCTCAGC
* * * ** * * *
49616007 GTGTG-CTCAAGGCTCGACTCACCTCTAACATTTTGAGTTGACTTTTGAAAAAACAGAAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAG
*
49616069 AAAATACCTCGGCGTGTGACCCAAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * * * * *
49616094 GCTCAACTCACCTCTCACATTAAGAGTTGATTTTTTTTCAAAAACATAAATTGAAAAAGACATCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA---TTTTTGAAAAACATAAATT-AAAAATACCTCA
* * * * * * *
49616159 GCGTGTGACCCGATGCTCAACTCACGTCTCGCGTTACGATTTGGTTTGTTGAAAATCATAAA-TT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAACATAAATTT
* * ** *
49616223 -GAAAATACCTCAGCTTCCGACCTGAG
126 AGAAAATACCTCGGCGTGTG-CCCGAG
* * * * * * *
49616249 GCTCAACTCAACTTTCGCATTATGAGTTGATTTTTGAAAAAAAGAATTTAAAAAATACCTCGGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATT-AAAAATACCTCAGCG
** * * * * *
49616314 TGTG-TTCGAGGCTCAACTCACTTCTCGCATTATAAGTTGATTTTT-AATAGAATATAAATTGAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA-A-AACATAAATTTAG
*
49616377 AAAATACATCGGCGTGTGCCCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * * *
49616401 GCTCAACTGACCTCTCGCATTATGAGGTGATTTTTG-AAAACATAGAAATTGAAAAATACGTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT-AAAAATACCTCAG
* * * *
49616465 CGTGTG-CCCGAAGCTCAACACACCTCTCGCATTATGAGTTGATGTTTG-AAAACA-ACGAAATT
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA--AATTT
**
49616527 -GAAAATACCTCAACGTGTGACCCGAG
126 AGAAAATACCTCGGCGTGTG-CCCGAG
* * * * * * *
49616553 GCTGAACTCAGCTCTCGCATTATGAGTAGATCTTTTTAAAATCATAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * *
49616618 T-TCGACCTGAGGCTCAACTCACCTCTAGCATTATGAGTTGATTTTTGAAAAAGAGAAATTTAAA
65 TGT-GACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
* * ** *
49616682 AAATACCACGGCATGTGTTCAAG
129 AAATACCTCGGCGTGTGCCCGAG
* * *
49616705 GCTCAACTTACCTCTCGCATTATGAGCTGATTTTTGAAAAA-ATAGAAATTGAAAAATACCAC-G
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT-AAAAATACCTCAG
* * * * * * *
49616768 TCGTCTG-CCCGAGGCTTAACTCACCTCTCACATTGTAAGTTGACTTTTGAAAAA-ATAGAAATT
63 -CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTT
* * *
49616831 -GAAAAATACCACGTCGTCTGCCCGAG
126 AG-AAAATACCTCGGCGTGTGCCCGAG
* **
49616857 GCTTAACTCACCTCTCGCATTATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAATACCTTGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATT-AAAAATACCTCAG
** * * *
49616922 CGTGCCACCCGAGGCTCGACTCA-CTGCTCGTATTATGAGTTGATTTTTTGAACATA-ATAAA-T
63 CGTGTGACCCGAGGCTCAACTCACCT-CTCGCATTATGAGTTGA-TTTTTGAA-AAACATAAATT
* * * * *
49616984 T-CAAAATATCTCAGCGTGCGACCCGAT
125 TAGAAAATACCTCGGCGTGTG-CCCGAG
* * * * * * *
49617011 GCTCAACTCACCTCTTGCATTAGGAATTGATTTTTGAAAAAAAGATATTTAAAACATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTAAAA-ATACCTCAGC
* ** * * * *
49617076 ATGTG-TTCGACGCTCAACTCACCTCTCGCATTATGAGTTCATTTTTGGAAAACA-AGAAATTA-
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAG
* * *
49617138 AAAATACCTTGGCGTGAGACCCAAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * *
49617163 ACTCAACTCACCTCTCGCATTATGAGTTGATATTTGAAAAACATAAATTTAAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** *
49617228 ATGTG-TTCGAGCCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAACACTGAAA-TTA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACA-T-AAATTTA
*
49617290 AAAAATACCTCGGCGTGTGCCCGAG
127 GAAAATACCTCGGCGTGTGCCCGAG
** *** * * *
49617315 GCTCAACTCACCTCTCTTATTATGAGTTGATTTAAAAAAAAC-GAAACTAAAAATAACTCAGCGT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTAAAAATACCTCAGCGT
* * * * * *
49617379 GTGACTCAAGGCTCAAC-CTAGCGCTCGCATTATGAGTTGATTTTTTGAAAATCGTAAA-TT-GA
66 GTGACCCGAGGCTCAACTC-ACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTAGA
* * *
49617441 AAATACCACAGCGTGCGACCCGAG
129 AAATACCTCGGCGTGTG-CCCGAG
* * * * * *
49617465 GCACAACTCACCTATCGCATTATGAGTTGATTTTTGAAAAAAAAAGAAATTTAAAACATACTTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG--AAAAACATAAA-TTAAAA-ATACCTCA
* ** ** *
49617530 GCATGTG-TTCGATCCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTT
* *
49617593 -GAAAACTACCAT-GGCGTGTGCCTGAT
126 AGAAAA-TACC-TCGGCGTGTGCCCGAG
* * * *
49617619 GCTCAACTCACCTC-CGCATTATGAGTTGACTTTTGAAAAACAGAAATTAAAAATACCTCGGCTT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTAAAAATACCTCAGCGT
* * * * * *
49617683 GTGACTCGAGGCTCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATCATAAA-TT-GAT
66 GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTT-TGAAAAACATAAATTTAGAA
** *
49617746 AATACCTCAACGTGCGACCCGAG
130 AATACCTCGGCGTGTG-CCCGAG
* *
49617769 GTTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** * * *
49617834 ATGTG-TTCGAGCCTCAATTCACCTCTCGCATTATGGGTTGATTTTTG-AAAACACTGAAA-TTA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACA-T-AAATTTA
* *
49617896 AAAAATACCTCAGCGTGTGCCCGAG
127 GAAAATACCTCGGCGTGTGCCCGAG
* * * * * * *
49617921 GCTCAACTCA-CTCTCGTATTATGAGTTGA-TTTTCAAAAAAACGAAACTAAAAATAACTCAGCT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACA-TAAATTAAAAATACCTCAGCG
* * * * * * * *
49617984 TGTGACTCAAGGCTCAACTTAGCTCTCGCATTATGAGTAGATTTTTTTAAAATCATAAA-CT-GA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTAGA
* ** ** *
49618047 AAATAGCTTAGCGTACGACCTGAG
129 AAATACCTCGGCGTGTG-CCCGAG
* * * * * *
49618071 GCTCAACTTACCTCTCGCATTATGAGTTGATTTTTCACAAACAAAAATTTAAAAAATACTTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** ** * * *
49618136 ATGTG-TTCGAGGCTCAACTCACCTCTCGCATTACAAGTTGATTTTTGAATAAACAAAAATTGAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA-AAACATAAATTTAG
49618200 AAAATACCTCGGCGTGTGCCCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * * *
49618224 GCTCAACTGACCTCTCGCATTATGAGATGA-TTTTGGAAAACATAGAAATTGAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT-AAAAATACCTCAG
* * *
49618288 CGTGTG-CCCGAAGCTCAACACACCTCTCGCATTATGAGTTGATTTTTGAAGACAAC-GAAA-TT
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA-A-AACATAAATTT
** *
49618350 -GAAAATACCTTAGCATGTGACCCGAG
126 AGAAAATACCTCGGCGTGTG-CCCGAG
* * * * * * *
49618376 GGTGAACTCAGCTCTCGCATTATGAGTAGATCTTTTTAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * * *
49618441 TGCGACCTGAGGCTTAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAATAGAAATTTAAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAA
* **
49618506 AATACCTCGGCATGTGTTCGAG
130 AATACCTCGGCGTGTGCCCGAG
* *
49618528 GCTCAACTCACATCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATTGAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT-AAAAATACCTCAG
* ** * * *
49618592 CATGTG-TTCGATGCTCAACTCACCTCTCGCATTATGAGTTCATTTTTGAAAAA-ATAGAAATT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTA
*
49618654 GAAAATACCTCGGCGTGTGACCCAAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* *
49618680 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTGAAAAACATAACTTGAAAAATACTTCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGA---TTTTTGAAAAACATAAATT-AAAAATACCTCA
* * * * * * * * * * *
49618745 GTGTGTGGCCTGAGGGTCAACTAACATATCACATTATAAGTTGATTTTTTGAAAATCGTAAA--T
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTT
* * * * *
49618808 CGAAAATACCACAGAGTGCGACCCGAG
126 AGAAAATACCTCGGCGTGTG-CCCGAG
* * * **
49618835 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAAGAAATTTAAAACATACTTTGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTAAAA-ATACCTCAGC
* ** * *
49618900 ATGTG-TTCGAGCCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAG
* *
49618962 AAAAATACCACGGCGTGTGCCCGAT
128 -AAAATACCTCGGCGTGTGCCCGAG
* * *
49618987 GCTCAACTCACCTCTCGCATTATGAGTTGACTATTGAAAAA-ATAGAAATTAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* * * * *
49619051 TTGTGACCCGAGGCTCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATCATAAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTT-TGAAAAACATAAATTTAG
* * * *
49619114 AAAATACCTCAGCATGCGACCCGAT
128 AAAATACCTCGGCGTGTG-CCCGAG
* * * *
49619139 GTTCAACTCACCTCTCGCATTATGAGTTGATATTTGAAAAACAAAAATTTAACAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTAA-AAATACCTCAGC
* **** * * * * * * *
49619204 ATGTG-TTTTAGGCTGAACTCACATCTTGCATTATGAGTTTACTTTAGAAAAAACAGAAA-TT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAG
*
49619266 AAAATACCTCGGCGTGTGACCTGAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * * * * * *
49619291 GCTCAACTCACCTGTCGCATTATGAATTGCTTTTTGAAAAATATATATTTAAAAAATACCACGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATT-AAAAATACCTCAGC
* ** * * ** * ** *
49619356 ATGTG-TTCAACGCTCAACTCATTTCTCGTATTATGAGTTGATTTTTGAAAAAACATCACCTCT-
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACAT-AAATTTA
* * * * * * * ** ** *
49619419 CAAAAGA-GTTGACTTTTTAAAAAACAAAA
127 GAAAATACCTCGGC-GTGT----GCCCGAG
** * * * * * * * * ** ** **
49619448 ATTGGAAAT-ACCTC-GGCAGGTGT-TCGCGGCTCAACTCACCTATCGCATTATGATTTGATTTT
1 GCT-CAACTCACCTCTCGCA--T-TAT-G-AG-T----TGA-TTTTTG-A--AAAACAT-A-AAT
** *
49619510 TAAAATAACAGAAATTGAAAAATACCTTGGCGTGTG-CCCGATGCTCAACTCACCTCTCGCATTA
49 T--A--------------AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTA
* * * * * *
49619574 TTAGTTTA-TTTTAAAAAAAATAGAAATT-GAAAATACCTCGGCGTGTGACGCGAG
98 TGAGTTGATTTTTGAAAAACATA-AATTTAGAAAATACCTCGGCGTGTG-CCCGAG
* * * * * * * * *
49619628 TG-TCAATTCAGCTCTCGCATTATCAATTGAGTTTTTGGAAATCATAAATTGAAAGTACCTCAGT
1 -GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGC
** ** * * * * *
49619692 GTACGACGTGAGGCTCAACTCACCTCTCGCCTGATGAGTTGATTTTTGAAAAATAAAAATTTA-T
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGA
* *** **
49619756 AAATACCTTGGCACATGTTCGAG
129 AAATACCTCGGCGTGTGCCCGAG
* * *
49619779 GCTCAACTCACCTCTCGCATTAAGAGTTGATTTCT-AAAAAAATAGAAATTGAAAAATACCAT-A
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATT-AAAAATACC-TCA
* * ** *
49619842 GAGTGTG-CCCGAGGCTCAACTCACCTCTCACATTATGAGTTGACATTTGAAAAAACA-AAAATT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTT
*
49619905 -GAAAATACCTCGGCATGTGACCCGAG
126 AGAAAATACCTCGGCGTGTG-CCCGAG
* ** *
49619931 G-TCAACTCACTTCTCGCATTATGAGTTGATTTTTTTGAACGACATAAATTGAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATT-AAAAATACCTCAG
* * * *
49619995 CGTGTGACCCGAGGCTCAACTCACGTCTCGAATTATGAGTTGATTTATTGAAAATCGTAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAACATAAATTTA
** *
49620058 GAAAATACCTCAACGTGCGACCCGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * *
49620084 GTTCAACTCAGCTCTCGCATTATGAGTTGATTTTTGAAAAACAAAAATTTAAAAATTACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTAAAAA-TACCTCAGC
* *** * * * * * *
49620149 ATGTG-TTTGAGGCTCAACTCACCTTTCGCATTATAAGTTGATTTTTGAAAAAAGAGAAATTGAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAG
* *
49620213 AAAACACCTCGGCATGTGCCCGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * * * * *
49620237 GCTCAACTCACCTCTCGTATTATTAGTTGATTTTTTGAAAATCATAAATTGAAGATACCTCAGTG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * * *
49620302 TGCGACCTGAGGCTCAACTCAGCTCTCGCATGATGAGTTGATTTTTG-AAAACTAGAAATTTAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAC-ATAAATTTAGA
* * ** **
49620366 AAATAGCTTGGCACGTGTTCGAG
129 AAATACCTCGGCGTGTGCCCGAG
** * * * * * *
49620389 GCTCAACTCATGTCTCGCATTATGAGTTGATTTTTTAAAAA-ATAAAAATTGAAAATAGCACGGA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* *
49620453 GTGTGA-CCGAGGCTCAACTCACCTATCGCATTATGAGTTG-TATTTTGAAAAA-ATAGAA-ATA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAACATA-AATTTA
* *
49620514 GAAAAAAACCTCGACGTGTGACCCGAG
127 G-AAAATACCTCGGCGTGTG-CCCGAG
*
49620541 GCTCAACTCACCTCTCGCATTATGAGTTGACTTTTTTGAAAAACATAAATTGAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACATAAATT-AAAAATACCTCAG
* * * *
49620606 CGTGTGACCCGGGGCTCAACTCACGTCTTGCATTATGAGTTGATTTGTTGAAAATCATAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAACATAAATTTA
* * * *
49620669 GAAAATAACTCAGCGTGCGACCCGAT
127 GAAAATACCTCGGCGTGTG-CCCGAG
* ** * *
49620695 GCTCAACTCAGCAGTCGCATTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATTACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTAAAAA-TACCTCAGC
* ** * * **
49620760 ATGTG-TTCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAA-ATAGAAACT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAG
* *
49620822 AAAAATTACCTCAGTGTGTGCCCGAG
128 -AAAA-TACCTCGGCGTGTGCCCGAG
* * **
49620848 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATTGAAACTAATTC-GA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAG-
* * * * *
49620911 CGTGTGA-CCGAAGCTCAACTCACCTCACGTATTTTGAGTT-ATTTTTTTTGAAAATCATAAA-T
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA---TTTTTGAAAAACATAAATT
* * * * *
49620973 GA-AAAATACCTCAGCGTGCGACTCAAG
125 TAGAAAATACCTCGGCGTGTG-CCCGAG
** * * * * * *
49621000 GCTTTACTCACCTCACGTATTATGAGTTGATTTTTGAAAAATAGAAATTTAAAAAGTACATCTGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TTAAAAA-TACCTCAGC
* *** * * * * *
49621065 ATG-GGTTCTAGGCTCAACTCACCTCTCGCATTATTAGTTGATTTTTGAAAAAAAAGAAATTGA-
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAG
*
49621128 AAAATACCTCGGCGTGTGCCTGAG
128 AAAATACCTCGGCGTGTGCCCGAG
* * * *
49621152 GCTCAACTCACCTCTCGCTTTATGAGTTGACTTTTGAAAAA-ATAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAT--AAATTAAAAATACCTCAGC
* *
49621216 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTCAAAAA-ATAGAAATT-G
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAG
* *
49621279 AAAATTCCTCGACGTGTGACCCGAG
128 AAAATACCTCGGCGTGTG-CCCGAG
* * * * * *
49621304 GGTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTAAAATCATAAATTTAAAATTCCTCAGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTAAAAATACCTCAGCG
* * * * * * *
49621369 TTTGACCCGAGGCTCAAATCTCCTATTGCATTATGAGTTGATTTTTGTAAAACA-ACAATTTAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAGA
* * *
49621433 AAATACCTCGACATGTGTTCACGA-
129 AAATACCTCGGC--GTGTGCCCGAG
* * * *
49621457 -CTCAACTCACCTCTCGCATTATGATTTGATTTTTAAAATAACAAAAATTGAAAAATACCT-TGA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA-AACATAAATT-AAAAATACCTCAG-
* * * **
49621520 CATGTG-CCCGATGCTCAACTCACCTCTCGCATTAAGAGTTGATTTTTTGAAAATTATAAA-TT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACATAAATTTA
* * ***
49621582 GAAAATACCTC-GTGTGCGAATTGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
* * * **
49621607 GCTCAACTCACCTCTTGCTTTATGAGTTGATTTTTGAAAAACAGAAATTTAAAAAATACCTTGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAA-TT-AAAAATACCTCAGC
* ** * *
49621672 ATGTG-TTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATTAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAG
*
49621735 AAAATAACAT-GGCGTGTGCCCGAG
128 AAAAT-ACCTCGGCGTGTGCCCGAG
* * * * * * *
49621759 GCTCAACTCACCTCTCGCATTATGAGTTGACTTTTGAAATAATAGAAATTGAAAATACGTCGGTG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA-AACATAAATTAAAAATACCTCAGCG
* * * * *
49621824 TGTGACCTGGGGCTGAACTCACCTCTGGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATT-GA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTAGA
* * *
49621887 AAATTCCTCGGCATGT-CTACGAG
129 AAATACCTCGGCGTGTGC-CCGAG
* * *
49621910 GCTCAACTCACCTCTCACATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATT--AAAAATACCTCAG
* * * * * * **
49621975 CGTGTG-CCCGAGGTTCAACTTACCTCTCACGTTATGAGTTGATATGTGAAAAA-ATAGAAACT-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATA-AATTTA
* * *
49622037 GAAAATAACTCGACGTGTGACCTGAG
127 GAAAATACCTCGGCGTGTG-CCCGAG
49622063 GCTCAA
1 GCTCAA
49622069 ATCATTAATT
Statistics
Matches: 18518, Mismatches: 4146, Indels: 2575
0.73 0.16 0.10
Matches are distributed among these distances:
141 1 0.00
142 11 0.00
143 31 0.00
144 80 0.00
145 138 0.01
146 143 0.01
147 229 0.01
148 114 0.01
149 367 0.02
150 858 0.05
151 2143 0.12
152 6364 0.34
153 3718 0.20
154 2178 0.12
155 1027 0.06
156 188 0.01
157 60 0.00
158 36 0.00
159 22 0.00
160 20 0.00
161 32 0.00
162 21 0.00
163 32 0.00
164 46 0.00
165 26 0.00
166 29 0.00
167 35 0.00
168 53 0.00
169 17 0.00
170 23 0.00
171 22 0.00
172 32 0.00
173 11 0.00
174 15 0.00
175 7 0.00
176 6 0.00
177 22 0.00
178 55 0.00
179 38 0.00
180 37 0.00
181 22 0.00
182 20 0.00
183 62 0.00
184 24 0.00
185 50 0.00
186 46 0.00
187 7 0.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (151 bp):
GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTAAAAATACCTCAGCGT
GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACATAAATTTAGAAA
ATACCTCGGCGTGTGCCCGAG
Found at i:49600530 original size:32 final size:32
Alignment explanation
Indices: 49600489--49600549 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
49600479 ACGACCTAAG
*
49600489 GCTCAACTCACCTCTTGCATTATGTGTTCGAC
1 GCTCAACTCACCTCTTGCATTATGAGTTCGAC
*
49600521 GCTCAACTCACCTCTTGTATTATGAGTTC
1 GCTCAACTCACCTCTTGCATTATGAGTTC
49600550 ATTGTTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.36
Consensus pattern (32 bp):
GCTCAACTCACCTCTTGCATTATGAGTTCGAC
Found at i:49600642 original size:185 final size:184
Alignment explanation
Indices: 49600326--49600695 Score: 490
Period size: 185 Copynumber: 2.0 Consensus size: 184
49600316 ATACCTCGGC
* * * *
49600326 ATGTGTTCGAGGCTCAACTCACCTCTCGCATTACGAGTTGATTTTTGAAAAAATAGAAATTGAAA
1 ATGTGTTCGACGCTCAACTCACCTCTCGCATTACGAGTTCATTGTTGAAAAAACAGAAATTGAAA
* ** * * * *
49600391 AATACCACTGCGTGTTCCCGAGGCTCAACTCACCGCTCGCATTATGAGTTGATTTTTTGGAAATC
66 AATACCACAGCGTGGACCCCAGGCTCAACCCACCACTCGCATTATGAGTTGATTTTTTGAAAATC
* * *
49600456 ATAAATTGAAAATATCTCAACATACGACCTAAGGCTCAACTCACCTCTTGCATT
131 ATAAATTGAAAATATCTCAACAGACGACCCAAGGCTCAACTCACATCTTGCATT
* * *
49600510 ATGTGTTCGACGCTCAACTCACCTCTTGTATTATGAGTTCATTGTTGAAAAAAACAGAAATTGAA
1 ATGTGTTCGACGCTCAACTCACCTCTCGCATTACGAGTTCATTGTTG-AAAAAACAGAAATTGAA
* * *
49600575 AAA-ACCTCAGCGTGCGACCCCAGGCTCGACCCACCACTCGCATTATGAGTTGATTTTTTTAAAA
65 AAATACCACAGCGTG-GACCCCAGGCTCAACCCACCACTCGCATTATGAGTTGATTTTTTGAAAA
* * * * *
49600639 TCATAAATTGAAAATATCTCAGCGGGCGACCCGAGGCTCAACTCACATTTTGCATT
129 TCATAAATTGAAAATATCTCAACAGACGACCCAAGGCTCAACTCACATCTTGCATT
49600695 A
1 A
49600696 AGAATTGATT
Statistics
Matches: 159, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
184 50 0.31
185 109 0.69
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (184 bp):
ATGTGTTCGACGCTCAACTCACCTCTCGCATTACGAGTTCATTGTTGAAAAAACAGAAATTGAAA
AATACCACAGCGTGGACCCCAGGCTCAACCCACCACTCGCATTATGAGTTGATTTTTTGAAAATC
ATAAATTGAAAATATCTCAACAGACGACCCAAGGCTCAACTCACATCTTGCATT
Found at i:49601702 original size:32 final size:32
Alignment explanation
Indices: 49601661--49601721 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
49601651 ACGACCTAAG
*
49601661 GCTCAACTCACCTCTTGCATTATGTGTTCGAC
1 GCTCAACTCACCTCTTGCATTATGAGTTCGAC
49601693 GCTCAACTCACCTCTTGCATTATGAGTTC
1 GCTCAACTCACCTCTTGCATTATGAGTTC
49601722 ATTTTTGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.20, C:0.31, G:0.15, T:0.34
Consensus pattern (32 bp):
GCTCAACTCACCTCTTGCATTATGAGTTCGAC
Found at i:49601789 original size:108 final size:108
Alignment explanation
Indices: 49601585--49601792 Score: 247
Period size: 108 Copynumber: 1.9 Consensus size: 108
49601575 TGTTCCCGAG
* * * * * *
49601585 GCTCAACTCACCGCTCGCATTATGAGTTGATTTTTTGGAAATCATAAATTGAAAATATCTCAACA
1 GCTCAACTCACCGCTCGCATTATGAGTTCATTTTTTGAAAAACAGAAATTGAAAAAACCTCAACA
* * * *
49601650 TACGACCTAAGGCTCAACTCACCTCTTGCATTATGTGTTCGAC
66 TACGACCCAAGGCTCAACCCACCACTCGCATTATGTGTTCGAC
* * *
49601693 GCTCAACTCACCTCTTGCATTATGAGTTCA-TTTTTGAAAAAACAGAAATTGAAAAAACCTCAGC
1 GCTCAACTCACCGCTCGCATTATGAGTTCATTTTTTG-AAAAACAGAAATTGAAAAAACCTCAAC
* * * *
49601757 GTGCGACCCCAGGCTCGACCCACCACTCGCATTATG
65 ATACGACCCAAGGCTCAACCCACCACTCGCATTATG
49601793 AGTTGATTTT
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
107 6 0.07
108 76 0.93
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (108 bp):
GCTCAACTCACCGCTCGCATTATGAGTTCATTTTTTGAAAAACAGAAATTGAAAAAACCTCAACA
TACGACCCAAGGCTCAACCCACCACTCGCATTATGTGTTCGAC
Found at i:49601813 original size:184 final size:184
Alignment explanation
Indices: 49601498--49601830 Score: 515
Period size: 184 Copynumber: 1.8 Consensus size: 184
49601488 ATACCTCGGC
* * *
49601498 ATGTGTTCGAGGCTCAACTCACCTCTCGCATTACGAGTTGATTTTTGAAAAAATAGAAATTGAAA
1 ATGTGTTCGACGCTCAACTCACCTCTCGCATTACGAGTTCATTTTTGAAAAAACAGAAATTGAAA
* ** * * *
49601563 AATACCACTGCGTGTTCCCGAGGCTCAACTCACCGCTCGCATTATGAGTTGATTTTTTGGAAATC
66 AATACCACAGCGTGGACCCCAGGCTCAACCCACCACTCGCATTATGAGTTGATTTTTTGGAAATC
49601628 ATAAATTGAAAATATCTCAACATACGACCTAAGGCTCAACTCACCTCTTGCATT
131 ATAAATTGAAAATATCTCAACATACGACCTAAGGCTCAACTCACCTCTTGCATT
* *
49601682 ATGTGTTCGACGCTCAACTCACCTCTTGCATTATGAGTTCATTTTTGAAAAAACAGAAATTGAAA
1 ATGTGTTCGACGCTCAACTCACCTCTCGCATTACGAGTTCATTTTTGAAAAAACAGAAATTGAAA
* * **
49601747 AA-ACCTCAGCGTGCGACCCCAGGCTCGACCCACCACTCGCATTATGAGTTGATTTTTTTTAAAT
66 AATACCACAGCGTG-GACCCCAGGCTCAACCCACCACTCGCATTATGAGTTGATTTTTTGGAAAT
49601811 CATAAATTGAAAATATCTCA
130 CATAAATTGAAAATATCTCA
49601831 GTGGGCGACC
Statistics
Matches: 133, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
183 9 0.07
184 124 0.93
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (184 bp):
ATGTGTTCGACGCTCAACTCACCTCTCGCATTACGAGTTCATTTTTGAAAAAACAGAAATTGAAA
AATACCACAGCGTGGACCCCAGGCTCAACCCACCACTCGCATTATGAGTTGATTTTTTGGAAATC
ATAAATTGAAAATATCTCAACATACGACCTAAGGCTCAACTCACCTCTTGCATT
Found at i:49603030 original size:108 final size:108
Alignment explanation
Indices: 49602836--49603043 Score: 260
Period size: 108 Copynumber: 1.9 Consensus size: 108
49602826 ATGACCCGAA
* * * * *
49602836 GCTCGACTCACCGCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTGGAAATATCTCAGCA
1 GCTCAACTCACCGCTCGCATTATGAGTTCATTTTTTGAAAATCAGAAATTGAAAATACCTCAGCA
** *
49602901 TACGACCTGAGGCTCGACTCACCTCTCGCATTATGTGTTCGAT
66 TACGACCCAAGGCTCAACTCACCTCTCGCATTATGTGTTCGAT
* *
49602944 GCTCAACTCACCTCTCGCATTATGA-TATCA-TTTTTGATCAAA-CAGAAATTGAAAATACCTCG
1 GCTCAACTCACCGCTCGCATTATGAGT-TCATTTTTTGA--AAATCAGAAATTGAAAATACCTCA
**
49603006 GCATGTGACCCAAGGCTCAACTCACCTCTCGCATTATG
63 GCATACGACCCAAGGCTCAACTCACCTCTCGCATTATG
49603044 AGTTGATTTT
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
107 8 0.09
108 74 0.87
109 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (108 bp):
GCTCAACTCACCGCTCGCATTATGAGTTCATTTTTTGAAAATCAGAAATTGAAAATACCTCAGCA
TACGACCCAAGGCTCAACTCACCTCTCGCATTATGTGTTCGAT
Found at i:49603031 original size:76 final size:75
Alignment explanation
Indices: 49602944--49604493 Score: 1411
Period size: 76 Copynumber: 20.5 Consensus size: 75
49602934 TGTGTTCGAT
* *
49602944 GCTCAACTCACCTCTCGCATTATGA-TATCATTTTTGATCAAACAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGT-TGATTTTTGA-AAAACAGAAATTGAAAATACCTCGGC
* *
49603008 ATGTGACCCAAG
64 GTGTGACCCGAG
* ** * *
49603020 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTGAAAAACATAACCTGAAAAATACTTCAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAACAGAAATTG-AAAATACCTCGG
*
49603085 CGTGTGACCTGAG
63 CGTGTGACCCGAG
* * * * * *
49603098 GCTCAACTCACATATCACATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCGGCG
*
49603163 TGCGACCCGAG
65 TGTGACCCGAG
* * *
49603174 GCTCAAGTCACCTCTCGCATCATGAGTTGATTTTT-AGAAAACAGAAATTAAAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA-AAAACAGAAATT--GAAAATACCTCGG
* **
49603238 CATGTG-TTCGAG
63 CGTGTGACCCGAG
* * * * * *
49603250 CCTCAACTAACCTCTCGCATTATGAGTTGATATTTGAAAAAATAGAAATTTAAAAATACCACGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACAGAAA-TTGAAAATACCTCGGC
* * *
49603315 ATTTG-CCCGAT
64 GTGTGACCCGAG
* * * * * * * *
49603326 TCTCAACTCACCTCTTGCATTATGAGTTGAGTTTTGAAAAAATAGAAAATAAAAATACATCGACG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACAGAAATTGAAAATACCTCGGCG
*
49603391 TGTGACTCGAG
65 TGTGACCCGAG
* * * * * *
49603402 GGTCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATC-GAAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTT-TGAAAAACAG-AAATTGAAAATACCTCGGC
49603466 GTGTGACCCGAG
64 GTGTGACCCGAG
* * * * * *
49603478 GTTCAACTCACCTCTTGCACTATGAGTTGATTTTTGAAAAACAAAAATTTAAAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGAAA-TT-GAAAATACCTCGGC
* ** *
49603543 ATGTG-TTCTAG
64 GTGTGACCCGAG
* *
49603554 GCTCAACTCATCTCTCGCATTATGAGTTGATTTTTCAAAAACTAGAAATTGAAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAC-AGAAATTG-AAAATACCTCGGC
49603619 GTGTG-CCCGAG
64 GTGTGACCCGAG
* * * * * *
49603630 GCTCAACTCACCTCTTGCATTATGAGTTGACTTTCGAAAAAACAGCAATTGAAAACACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACAGAAATTGAAAATACCTCGGCG
49603695 TGTGACCCGAG
65 TGTGACCCGAG
* * * * * * * *
49603706 GCTCAACTCACCTCTCGCATTATGAATTGATTTTTAAAAAATATATATTTAAAAATACCACGGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGA-AATTGAAAATACCTCGGCG
** *
49603771 TGTG-TTCGAC
65 TGTGACCCGAG
* * * *
49603781 GCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAATAAAAATTGAAAAACACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACAGAAATTG-AAAATACCTCGGC
49603846 GTGTG-CCCGAG
64 GTGTGACCCGAG
* * * *
49603857 GCTCAACTCACCAT-T--CA-AAAGAGTTGACTTTTG-AAAA-A-AAATTGAAAATACCTCTGCG
1 GCTCAACTCACC-TCTCGCATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCGGCG
*
49603915 TGTGACTCGAG
65 TGTGACCCGAG
* *
49603926 GCTCAACT-AGCCTCTCGCATTATGAGTTGATTTTTTTGAAGAACATAAATTGAAAATTACCTCG
1 GCTCAACTCA-CCTCTCGCATTATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAA-TACCTCG
49603990 GCGTGTGACCCGAG
62 GCGTGTGACCCGAG
* * * * * *
49604004 ACTCAACTCACATCTCGCATTATGAGTTGATTTTTTAAAACTCATAAATTGAAAATACCTCTGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-ACAGAAATTGAAAATACCTCGGCG
49604069 T-TCGACCCGAG
65 TGT-GACCCGAG
* ** * *
49604080 GCTCAACTCACCTCTCGCTTTATGAGTTGA-TTTTGAAAAGTATAAATTTACAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGAAA-TT-GAAAATACCTCGGC
* **
49604144 ATGTG-TTCGAG
64 GTGTGACCCGAG
* * * * *
49604155 CCTGAACTCACCTCTCGCATTATGATTTGATTTTTGGAAAAACTGAAATTGAAAAATACCTCGCC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAACAGAAATTG-AAAATACCTCGGC
* *
49604220 GTGTG-CACGAC
64 GTGTGACCCGAG
* *
49604231 GCTCAACTCACCTC-CTGCATTATGAGTTGATTTTGGAAAAAATAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTC-GCATTATGAGTTGATTTTTG-AAAAACAGAAATTGAAAATACCTCGGC
*
49604295 GTGTGACCCAAG
64 GTGTGACCCGAG
* * * * ** * *
49604307 GCACAACTAATCTCTCGCATTATGAGTTGATTTTTTGAAAATCATTAATTGAAAATACCTCAGCT
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCGGCG
* *
49604372 TGCGACCTGAG
65 TGTGACCCGAG
* * * *
49604383 GCTCAACTCACCACTCGCATTATGAGTTGATTTTTGAAAAAACAGGAATTTTAAAAAATACCTCT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACA-GAA-ATT-GAAAATACCTCG
* **
49604448 GCATGTG-TTCGAG
62 GCGTGTGACCCGAG
*
49604461 GCTCAAATCACCTCTCGCA-TATGAGTTGATTTT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTT
49604494 CAAATCACCT
Statistics
Matches: 1203, Mismatches: 217, Indels: 107
0.79 0.14 0.07
Matches are distributed among these distances:
68 18 0.01
69 22 0.02
70 1 0.00
71 6 0.00
72 8 0.01
73 13 0.01
74 12 0.01
75 170 0.14
76 679 0.56
77 134 0.11
78 124 0.10
79 16 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (75 bp):
GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCGGCGT
GTGACCCGAG
Found at i:49603504 original size:228 final size:228
Alignment explanation
Indices: 49602944--49622772 Score: 14396
Period size: 228 Copynumber: 86.6 Consensus size: 228
49602934 TGTGTTCGAT
*
49602944 GCTCAACTCACCTCTCGCATTATGA-TATCA-TTTTTGATCAAA-CAGAAATTGAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGT-TGATTTTTTGA--AAATCA-AAATTGAAAATACCTCG
* * *
49603006 GCATGTGACCCAAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTGAAAAACAT--AAC
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAA-ATAGAAA
* * * * * * * *
49603069 CTGAAAAATACTTCAGCGTGTGACCTGAGGCTCAACTCACATATCACATTATGAGTTGATTTTTT
124 TTTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTT
* * *
49603134 G--AAAATCATAAATTG-AAAATACCTCAGCGTGCGACCCGAG
187 GAAAAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49603174 GCTCAAGTCACCTCTCGCATCATGAGTTGATTTTTAGAAAA-CAGAAATTAAAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATT--GAAAATACCTCGG
* ** * * *
49603238 CATGTG-TTCGAGCCTCAACTAACCTCTCGCATTATGAGTTGATATTTGAAAAAATAGAAATTTA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
* * * ** * *
49603302 AAAATACCACGGCATTTGCCCGATTCTCAACTCACCTCTTGCATTATGAGTTGAGTTTTGAAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* * * *
49603367 ATAGAAAAT-AAAAATACATCGACGTGTGACTCGAG
193 ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * ** *
49603402 GGTCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATCGAAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATC-AAAATTGAAAATACCTCGGCG
* * *
49603467 TGTGACCCGAGGTTCAACTCACCTCTTGCACTATGAGTTGATTTTTGAAAAACA-A-AAATTTAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATTT-A
* * ** * * *
49603530 AAAATACCTCAGCATGTGTTCTAGGCTCAACTCATCTCTCGCATTATGAGTTGATTTTTCAAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
*
49603595 CTAGAAATTGAAAAATACCTCGGCGTGTG-CCCGAG
193 ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * * *
49603630 GCTCAACTCACCTCTTGCATTATGAGTTGA-CTTTCGAAAAAACAGCAATTGAAAACACCTCAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTGAAAATACCTCGGC
* * *
49603694 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAATTGATTTTT-AAAAAATATATATTTAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTAA
* * ** * *
49603758 AAATACCACGGCATGTGTTCGACGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAA
129 AAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
* *
49603823 TAAAAATTGAAAAACACCTCGGCGTGTG-CCCGAG
194 TAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49603857 GCTCAACTCACCAT-T--CA-AAAGAGTTGA-CTTTTGAAAA--AAAATTGAAAATACCTCTGCG
1 GCTCAACTCACC-TCTCGCATTATGAGTTGATTTTTTGAAAATCAAAATTGAAAATACCTCGGCG
* *
49603915 TGTGACTCGAGGCTCAACT-AGCCTCTCGCATTATGAGTTGATTTTTTTGAAGAACAT--AAATT
65 TGTGACCCGAGGCTCAACTCA-CCTCTCGCATTATGAGTTGA--TTTTTGAA-AAAATAGAAATT
* * * * *
49603977 GAAAATTACCTCGGCGTGTGACCCGAGACTCAACTCACATCTCGCATTATGAGTTGATTTTT-TA
126 TAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * *
49604041 AAACTCATAAATTG-AAAATACCTCTGCGT-TCGACCCGAG
190 AAAAT-AGAAATTGAAAAATACCTCGGCGTGT-GACCCGAG
* *
49604080 GCTCAACTCACCTCTCGCTTTATGAGTTGA--TTTTGAAAAGT-ATAAATTTACAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAA-TCA-AAA-TT-GAAAATACCTCG
* ** * * * *
49604142 GCATGTG-TTCGAGCCTGAACTCACCTCTCGCATTATGATTTGATTTTTGGAAAAACT-GAAATT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAAATAGAAATT
* * * * *
49604205 GAAAAATACCTCGCCGTGTGCACGACGCTCAACTCACCTC-CTGCATTATGAGTTGATTTTGGAA
126 TAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTC-GCATTATGAGTTGATTTTTGAA
*
49604269 AAAATAGAAATTG-AAAATACCTCGGCGTGTGACCCAAG
190 AAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * *
49604307 GCACAACTAATCTCTCGCATTATGAGTTGATTTTTTGAAAATCATTAATTGAAAATACCTCAGCT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
* * * * *
49604372 TGCGACCTGAGGCTCAACTCACCACTCGCATTATGAGTTGATTTTTGAAAAAACAGGAATTTTAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATA-GAAATTT-A
* * ** * *
49604437 AAAATACCTCTGCATGTGTTCGAGGCTCAAATCACCTCTCGCA-TATGAGTTGA-TTTTCAAATC
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA--
** ****** ****
49604500 ACCTCTCGCATTATGAGTTGATTTTAGAAAAA-ACAAAATTGAAAAAACCC-ACG
191 A--------A--AT-A---GAAATT-GAAAAATACCTCGGCG-TGTGACCCGA-G
*** * * * * ** * *** *** * *
49604553 GCGTGTGCCCGAGCTCAACTCA-CCT--CTTGCATTAGAAGTGATTTTTGAAAAACAAAAATTTA
1 GC-TCAACTC-ACCTC-TCGCATTATGAGTTG-ATT--TTTTGA-AAATCAAA-------ATTGA
* * **
49604615 TAAATTACTTCGGTAG-GTG-TTCGA-GCTCAACTCA-CTCTCGCATTATGAGTTGATTTTTGAA
52 -AAA-TACCTCGG-CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * * *
49604676 AAAACAAGAAATTGAAAAAT-TCTCGGCGTGT-CCCGAGGCTCAACTCACCTCTCGTATTATGAG
114 AAAA-TAGAAATTTAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAG
* * * * * *
49604739 TTGACTTTTGAACAAATAGAAATT--AAAATACTTCGGCATCTGA-CTGAG
178 TTGATTTTTGAAAAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49604787 GCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAAAAACAAAATTGAAAAT-CGTCGG-G
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTTGAAAATCAAAATTGAAAATACCTCGGCG
* * *
49604850 TGTGACCCGAGGCTCAACTCAACTCTCGCATTATGATGATT-TTTTTTG--AAAATCATAAA-TT
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGA-G-TTGATTTTTGAAAAAAT-AGAAATTT
* * * * *
49604911 GAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAA
127 AAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
*
49604976 AGACTA-AAATTGAAAAAATACCTCGGCGTGTG-CCCGAG
191 A-AATAGAAATTG-AAAAATACCTCGGCGTGTGACCCGAG
* ** * * * *
49605014 GCTCAACTCACCTCTCACATTAAAAGTTGA-ATTTTGAAAAAACAGAAATTCAAAAATACCTTGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATT-GAAAATACCTCGG
* * * * *
49605078 CGTGTGACCCGAGG-TTAACTCTCCTATCGAATTATGAGTTGATTTGTTTG-AAAAATATAAATT
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAAATAGAAATT
* ** * * * * * **
49605141 GAAAAATACCTCGGCGTGTATCGGCA-CCTTAACTCACATCTCGCACTATGAGTTGATTTTT-TT
126 TAAAAATACCTCGGCGTGTGCCCG-AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * * **
49605204 AAAATCATAAATT-AAAAATATCTCAGCGTGCAACCCGAG
190 AAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * ** *
49605243 GCTCAACTCACCTCTCGCATTATGA-ATGATTTTTTAAAAAT--ATATAAAAAATACCAT-GGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCAAAATTGAAAATACC-TCGGCG
** * * ** * **** *
49605304 TGTG-TTCGACGCTCAACTCATTGAAAAACAC-CTCGGCGTGTGCCGAGGCTCAACTCACCACTC
65 TGTGACCCGAGGCTCAACTC--------AC-CTCTC-GCAT-T-ATGA-G-T----TGATTTTTG
* * * ** *
49605367 AAAGGAGTTGACTTTTGAAAAAAAATTGAAAATCCT-GTGCGTGTGACTCGAGGCTCAACT-AGC
112 AAA-AAATAGAAATTT--AAA--AA-T----A-CCTCG-GCGTGTG-CCCGAGGCTCAACTCA-C
* *
49605430 C-CTCGCATTATGAGTTGATTTTTTTGAAAAACAT--AAATTGAAAAGTACCTCGGCGCGT-ACC
163 CTCTCGCATTATGAGTTGA--TTTTTGAAAAA-ATAGAAATTGAAAAATACCTCGGCGTGTGACC
49605491 CGAG
225 CGAG
* * *
49605495 ACTCAACTCACATCTCGCATTATGAGTTGA-TTTTT-AAAACTCAAAATTGAAAATACCTCTGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAA-TCAAAATTGAAAATACCTCGGCG
* *
49605558 T-TCGA-CCGAGGCTCAACTCACC-CTCGCTTTATGAGTTGA-TTTTG-AAAAGTAGAAATTTAA
65 TGT-GACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT-A
* ** * * *
49605618 AAAATACCTCGGCATGTGTTCGAGCCTGAACTCACCTCTCGCATTATGATTTGATTTTTGGAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAA
* * *
49605683 ACT-GAAATTGAAAAATACCTC-GCTGTGTG-CACGAC
192 AATAGAAATTGAAAAATACCTCGGC-GTGTGACCCGAG
* * *
49605718 ACTCAACTCACCTCCCGCATTATGAGTTGA-TTTTGGAAAAAAT-AGAAATTGAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCA-AAATTGAAAATACCTCGG
* * * * **
49605781 CGTGTGACCCAAGGCACAACTAATCTCTCGCATTATGA-TTGATTTTTTG--AAAATCATTAA-T
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAATT
* * * * * * *
49605842 TGAAAATACCTCAGCTTGCGACTGAGGCTCAACTCACCACTCGCATTATGAGTTGA-TTTTG-AA
126 TAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* * * * **
49605905 AAACAGAAATTTAAAAAATACCTCTGCATGTG-TTCGAG
191 AAATAGAAA-TTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * *
49605943 GCTCAAATCACCTCTCGCATTATGAGTTGA-TTTTAGAAAAAACAAAAATTGAAAAAACTCACGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATC-AAAATTGAAAATAC-CTCGG
* *
49606007 CGTGTG-CCCGAGGCTCAACTCACCTCT-GCATTATAAGTT-AATTTTGAAAAACA-A-AAATTT
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATTT
* * * ***
49606067 ATAAATACTTCGGTAG-GTGTTTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
127 AAAAATACCTCGG-CGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* * * *
49606131 AAACAGAAATGGAAAAATATCTCGGCGTGTG-CCCAAG
191 AAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49606168 GCTCAACTCACCTCTCGTATTATCAGTTGACTTTTTGAACAAAT-AGAAATTGAAAATACTTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-A-AAATCA-AAATTGAAAATACCTCGG
* * * * *
49606232 CATCTAACCCGA-GCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAAAAACAT--AAA-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAA-ATAGAAAT
* *
49606293 TTGAAAAT-CCGTCGGCGTGTGACCCGAGGCTCAACTCAACTCTCGCATTATGAGTTGATTTTTT
125 TTAAAAATACC-TCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTT
* * * *
49606357 G--AAAATCATAAATTG-AAAATACCTCAGCGTGCGACCTGAG
187 GAAAAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* *
49606397 GCTCAACTCACCTCTCGCATTATGTGTTGA-TTTTTGAAAAGACTAAAATTGAAAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAA-TC-AAAATTG--AAAATACCTCG
* * ** * * *
49606461 GCGTGTG-CCCGAGGCTCAACTCACCTTTCACATTAAAAGTTGAATTTTGAAAAAACAGAAATTC
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT
* * * *
49606525 AAAAATACCTTGGCGTGTGACCCGAGGCTCAACTCTCCTATCGAATTATGAGTTGATTTGTTTG-
127 AAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGA
* * * *
49606589 AAAATTATAAATTGAAAAATACCTCGGCGTGTGATCGGCA-
189 AAAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCG-AG
* * * * * * * *
49606629 CCTTAACTCACATCTCGCACTATGAGTTGATTTTTTTTAAAATCATAAATTAAAAATATCTCAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTGAAAATCA-AAATTGAAAATACCTCGGC
** * * * *
49606694 GTGCAACCCGAGGCTCAACTCACCTCTCGCATTATGAATTGATTTTT-TAAAAATATATATTTAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT-A
* * ** * * *
49606758 AAAATACCACGGCATGTGTTCGAAGCTCAACTCACCTCTTGTATTATGAGTTGATTTTTGAAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* *
49606823 ACAGAAATTGAAAAACACCTCGGCGTGTG-CCCGAG
193 ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * **
49606858 GCTCAACTCACCACT--CA-AAGGAGTTGA-CTTTTGAAAA--AAAATTGAAAATACCTATGCGT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCAAAATTGAAAATACCTCGGCGT
* * *
49606917 GTGACTCGAGGCGCAACT-AGCCTCTCGCATTATGAGTTGATTTTTTGAAAAACAT--AAATTGA
66 GTGACCCGAGGCTCAACTCA-CCTCTCGCATTATGAGTTGA-TTTTTGAAAAA-ATAGAAATTTA
* * *
49606979 AAATTACCTCGGCGTGTGACCCGAGACTCAACTCACATCTCGCATTATGAGTTGATTTTT--AAA
128 AAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* * *
49607042 ACTCATAAATTG-AAAATACCTCTGCGT-TCGACCCGAG
192 AAT-AGAAATTGAAAAATACCTCGGCGTGT-GACCCGAG
* * *
49607079 GCTCAACTCACCTCTCACTTTATGAGTTGA-TTTTTGAAAAGT-AGAAATTAAAAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAA-TCA-AAATT--GAAAATACCTCG
* ** * * * * *
49607142 GCATGTG-TTCGAGCCTGAACTCACCTATCGCATTATGATTTGATTTTTGGAAAAACT-GAAATT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAAATAGAAATT
* * * * * *
49607205 GAAAAATACCTCGCCGTGTGCACGACGCTCAACTCACCTCCCGCATTATGAGTTGA-TTTGGAAA
126 TAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
*
49607269 AAATAGAAATTG-AAAATACCTCGGCGTGTGA-CCAAG
191 AAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * *
49607305 GCTCAACTCATCTCTCGCATTATGAGTTGATTTTTTTGAAAATCATTAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTGAAAATCA-AAATTGAAAATACCTCGGC
* * * * *
49607370 GTGCGACCTGAGGCTCAATTCACCACTCGCATTATGAGTTGATTTTTG-AAAAACAGAAATTTAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT-A
* * ** * * *
49607434 AAAATACCTCTGCATGTGTTCGAGGCTCAAATCACCTCTCACATTATGAGTTGATTTTAGAAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* * *
49607499 ACAAAAATTGAAAAA-ACCCACGGCGTGTG-CCCGAG
193 ATAGAAATTGAAAAATA-CCTCGGCGTGTGACCCGAG
* * * *
49607534 GCTCAACTCACCTCTTGCATTA-GAAGTTGA-TTTTTGAAAAACAAAAATTTATAAATTACTTCG
1 GCTCAACTCACCTCTCGCATTATG-AGTTGATTTTTTGAAAATC-AAAATTGA-AAA-TACCTCG
* ** *
49607597 GTAG-GTG-TTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATT
62 G-CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATT
* * * * *
49607660 GAAAAATATCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGACTTTTGAAC
126 TAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* * * *
49607725 AAATAGAAATT-AAAAATACTTCGGCATCTGACCTGAG
191 AAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49607762 GCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAAAAACGTAAATTGAAAAT-CCGTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTTGAAAATC-AAAATTGAAAATACC-TCGG
* *
49607826 CGTGTGACCCGAGGCTCAACTCAACTCTCGCATTATGAGTTGATTTTTTG--AAAATCATAAA-T
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAATT
* * * * *
49607888 TGAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACCTCTCGCATTATGTGTTGATTTTTGAA
126 TAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* *
49607953 AAGACTA-AAATTGAAAAAATACCTCGGCGTGTG-CTCGAG
190 AA-AATAGAAATTG-AAAAATACCTCGGCGTGTGACCCGAG
* ** * * * *
49607992 GCTCAACTCACCTCTCACATTAAAAGTTGA-ATTTTGAAAAAACAGAAATTCAAAATACCTTGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTGAAAATACCTCGGC
* * * * * *
49608056 GTGTGACCCGAGGTTCAACTCTCCTATCGAATTATGAGTTGATTTGTTTG-AAAAATATAAATTG
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAAATAGAAATTT
** * * * * **
49608120 AAAAATACCTCGGCGTGTGATCG-GCACCTTAACTCACATCTCGCACTATGAGTTGATTTTT-TT
127 AAAAATACCTCGGCGTGTGCCCGAG--GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * * **
49608183 AAAATCATAAATT-AAAAATATCTCAGCGTGCAACCCGAG
190 AAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49608222 GCTCAACTCACCTCTCGCATTATGAATTGATTTTTTAAAAAT-ATATATTTAAAAAATACCAT-G
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-A-AATT-GAAAATACC-TCG
* ** * * * * *
49608285 GCATGTG-TTCGACGCTCAACTCACCTCTCGTATTATGAGTTGACTTTTGAAAAAACAGAAATTG
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT
* * * * * * *
49608349 GAAAACACCTCGGCGTGTGCCCGAGGCTCAACTCACCACT--CA-AAGGAGTTAACTTTTG--AA
127 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* *
49608409 AA-A-AAATTG-AAAATTCCT-GTGCGTGTGACTCGAG
192 AATAGAAATTGAAAAATACCTCG-GCGTGTGACCCGAG
*
49608443 GCTCAACT-AGCCTCTCGCATTATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAGTACCTCG
1 GCTCAACTCA-CCTCTCGCATTATGAGTTGA-TTTTTTGAAAATCA-AAATTGAAAA-TACCTCG
* * * * *
49608507 GCGTGTGACCCGAGACTCAACTCACATCTCGCATTATGAGTTGATTTTT-TAAAACTCATAAA-T
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAT-AGAAATT
* * *
49608570 TGAAAATACCTCTGCGT-TCGACCCGAGGCTCAACTCACCTCTCGCTTTATGAGTTGATTTTTG-
126 TAAAAATACCTCGGCGTGT-G-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA
* * * **
49608633 AAAAGTAGAAATTTAAAAAATACCTCGGCATGTG-TTCGAG
189 AAAAATAGAAA-TTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * *
49608673 CCTGAACTCACCTCTCGCATTATGATTTGATTTTTGGAAAAACTGAAATTGAAAAATACCTC-GC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATC-AAAATTG-AAAATACCTCGGC
* ** * * *
49608737 TGTGTG-CACGACACTCAACTCACCTCCCGCATTATGAGTTGATTTTGGAAAAAATAGAAA-TTG
64 -GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
* * * *
49608800 AAAATACCTCGGCGTGTGACCCAAGGCACAACTAATCTCTCGCATTATGAGTTGATTTTTTG--A
128 AAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAA
** * * * *
49608863 AAATCATTAATTG-AAAATACCTCAGCTTGCGACCTGAG
191 AAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * *
49608901 GCTCAACTCACCACTCGCACTATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAAATACCTCTG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAA-TT-GAAAATACCTCGG
* ** * * * * *
49608965 CATGTG-TTCGAGGCTCAAATCACCTCTCGCATTATGAGTTGATTTTAGAAAAAACAAAAATTGA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
* * * * *
49609029 AAAA-ACTCACGGCGTGTGCCCGAGGCTCAACTCACCTCTTGCATTATAAGTTAAGTTTTGAAAA
128 AAAATAC-CTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* * * * ***
49609093 ACA-A-AAATTTATAAATTACTTCGGTAG-GTG-TTTGAG
192 A-ATAGAAATTGA-AAAATACCTCGG-CGTGTGACCCGAG
* * *
49609129 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACAGAAATGGAAAAATATCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTG-AAAATACCTCGG
* * * * *
49609193 CGTGTG-CCCGAGGCTCAACTCACCTCTCGTATTATCAGTTGACTTTTGAACAAATAGAAA-TTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
* * * * * *
49609256 AAAATACTTCGGCATCTAACCCGAGGCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAA
128 AAAATACCTCGGCGTGT-GCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAA
49609321 AAACAT--AAATTG-AAAAT-CCGTCGGCGTGTGACCCGAG
190 AAA-ATAGAAATTGAAAAATACC-TCGGCGTGTGACCCGAG
* *
49609358 GCTCAACTCAACTCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
* * * * *
49609423 TGCGACCTGAGGCTCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGACTA-AAATTGAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AATAGAAATT-TA
* * ** *
49609487 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTTTCACATTAAAAGTTGAATTTTGAAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* * * *
49609552 ACAGAAATT-CAAAATACCTTGGCGTGTGACCTGAG
193 ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49609587 GCTCAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAATTATAAATTGAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTTGAAAATCA-AAATTG-AAAATACCTCGG
* * * * * * * *
49609652 CGTGTGATCGGCA-CCTTAACTCACATCTCGCACTATGAGTTGATTTTT--TAAAATCATAAA-T
63 CGTGTGACCCG-AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAT-AGAAATT
* * ** * *
49609713 T-AAAATATCTCAGCGTGCAACCCGAGGCTCAACTCACCTCTCGCATTATGAATTGATTTTTTAA
126 TAAAAATACCTCGGCGTG-TGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * * * * ** *
49609777 AAATATA-TATTTAAAAAATACCACGGCATGTG-TTCGAA
190 AAA-ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * *
49609815 GCTCAACTCACCTCTCGTATTATGAGTTGA--TTTTGAAAAAACAGAAATTGAAAAACACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTG-AAAATACCTCGG
* * * * *
49609878 CGTGTG-CCCGAGGCTCAACTCACCACT--CA-AAGGAGTTGACTTTTG--AAAA-A-AAA-TTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
** * * *
49609934 AAAATACCTATGCGTGTGACTCGAGGCGCAACT-AGCCTCTCGCATTATGAGTTAATTTTTTTGA
128 AAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCA-CCTCTCGCATTATGAGTTGA--TTTTTGA
*
49609998 AAAACAT--AAATTGAAAATTACCTCGGCGTGTGACCCGAG
189 AAAA-ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * *
49610037 ACTCAACTCACATCTCGCATTATGAGTTGA-TTTTT-AAAACTCATAAATTGAAAATACCTCTGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAA-TCA-AAATTGAAAATACCTCGGC
* * * *
49610100 GT-TCGACCCGAGGCTCAACTCACCTCTCACTTTATGAGTTGATTTTTG-AAAAGTAGAAATTAA
64 GTGT-GACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATT-T
* ** * * * *
49610163 AAAAATACCTCGGCATGTGTTCGAGCCTGAACTCACCTATCGCATTATGATTTGATTTTTGGAAA
127 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAA
* * * *
49610228 AACT-GAAATTGAAAAATACCTCGCCGTGTG-CACGAC
191 AAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* *
49610264 GCTCAACTCACCTCCCGCATTATGAGTTGA-TTTTGGAAAAAAT-AGAAATTGAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCA-AAATTGAAAATACCTCGG
* * **
49610327 CGTGTGACCCAAGGCTCAACTCATCTCTCGCATTATGAGTTGATTTTTTG--AAAATCATTAA-T
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAATT
* * * * * *
49610389 TGAAAATACCTCAGCGTGCGACCTGAGGCTCAATTCACCACTCGCATTATGAGTTGATTTTTG-A
126 TAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * * * **
49610453 AAAACAGAAATTTAAAAAATACCTCTGCATGTG-TTCGAG
190 AAAATAGAAA-TTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * *
49610492 GCTCAAATCACCTCTCACATTATGAGTTGA-TTTTAGAAAAAACAAAAATTGAAAAAACCCACGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATC-AAAATTGAAAATA-CCTCGG
** *
49610556 CGTGTG-CCCGAGGCTCAACTCACCTCTTTCATTATAAGTTGATTTTTGAAAAACA-A-AAATTT
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATTT
* * * ** *
49610618 ATAAATTACTTCGGTAG-GTGTTCGAGGTTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
127 A-AAAATACCTCGG-CGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * *
49610682 AAAACAAAAATTGAAAAATATCTCGGCGTGTG-CCCGAG
190 AAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * *
49610720 GCTCAACTCACCTCTCGTATTATGAGTTGA-CTTTTGAACAAAT-AGAAATTGAAAATACTTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-A-AAATCA-AAATTGAAAATACCTCGG
* * *
49610783 CGTCTGACCCGAGGCTTAACTAACCTCTCGCATTATGAGTTGATTTATTTGAAAAACAT--AAA-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAA-ATAGAAAT
* * *
49610845 TTGAAAAT-CCGTCGACGTGTGACCCGAGGCTCAACTCAACTCTCGCATTATGAGTTGATTTTTT
125 TTAAAAATACC-TCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTT
* * * **
49610909 G--AAAATCATAAATTG-AAAATACCTCAGCGTGCGACTTGAG
187 GAAAAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * **
49610949 GCTCAACTCACCTCTCGCATTATGTGTTGA-TTTTTGAAAAGACAAAAATTGAACAAATAGATCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAA-TC-AAAATTG-A-AAATACCTCG
* * * * *
49611013 GCGTGTG-CCCGAGGCTCAACTCACCTCTCACATTAAGAGTTTAATTTTGAAAAAACAGAAA-TT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT
* * * * *
49611076 CAAAATACCTTGGCGTGTGACCCGAGGCTCAACTCTCCTATCGAATTATGAGTTGATTTGTTTG-
127 AAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGA
* *
49611140 AAAAATATAAATTGAAAAATACCTCGGCGTGTGACCGGCA-
189 AAAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCG-AG
* * * * ** ** **
49611180 CCTCAACTCACATCTCGCACTATGAGTTGATTTTTTTAAAATCATAAATAAAAAATATGTCAACG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
** * * *
49611245 TGCAACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAATTTTG-AAAAATATATATTTAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT-AA
* * ** * ** * * *
49611309 AAATACCTCAGCATGTGTTCTAGG-TCCAACTCACCTCTCTTATTATTAATTAATTTTTGAAAAA
129 AAATACCTCGGCGTGTGCCCGAGGCT-CAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* * * * *
49611373 ACAAAAATTCAAAAAATACCTCGGCATGTG-CCTGAG
193 ATAGAAATT-GAAAAATACCTCGGCGTGTGACCCGAG
* *
49611409 GCTCAACTCACCTCTAGCATTATGAGTTGA-CTTTTGAAAAAAAAT-AGAAATTGAAAATACCTC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG----AAAATCA-AAATTGAAAATACCTC
* * *
49611472 GGCGTGTGACCTGAGGTTCAACTTACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAA-T
61 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATT
* * * *
49611536 TGAAAATTCCTCGGAGTG-ACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTGTTTG--
126 TAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT-TTTGAA
* * * *
49611598 AAAATCATAAATTG-AAAATTCCTCAGCGTGCGACCCGAG
190 AAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49611637 GCTCAACTCACCTCTTGCATTATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAAATACCTTGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAA-TT-GAAAATACCTCGG
* ** * * * *
49611701 CATGTG-TTCGCGGCTCAACTCACCTCTCGCATTATGATTTGATTTTT-AAAATAACAGAAATTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AATAGAAATTT
* * * *
49611764 AAAAATACCTTGGCGTGTGCCCGATGCTCAACTCACCTCTCGCATTATTAGTTGATTTTTGCAAA
127 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* *
49611829 AACAGAAATTG-AAAATACCTCGGCGTGTGACACGAG
192 AATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * ** * ** *
49611865 GCTCAACTCAGCTCTCGGATTATGAGTTGGTTTTTTCTAAATCATAAACTGAAAATACCTTAGTG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
** * * **
49611930 TGCAACCTGAGGCTCAACTCATCTCTCGCATGCTGAGTTGATCTTTT--AAAAATAGAAATTTAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAAATAGAAATTTAA
* * * * *
49611993 AATATACCTTGCACGTGT--TCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATTTTTGGAAA
129 AA-ATACCTCG-GCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
*
49612056 AATAGAAATTGAAAAATACCACGGCGTGTG-CCCGAG
192 AATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* ** * *
49612092 GCTCAGCTCACCTCTAACATTATGAGTTGA-CTTTTGAAAAAAT-AGAAATTGAAAATTCCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCA-AAATTGAAAATACCTCGG
* ** * * *
49612155 TGTGTGACCTAAGGCTCAACTCACCTCTCACATTATGAGTTAATTTTTTTGAACAACAT--AAAT
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAA-AAAATAGAAAT
* * * * * * *
49612218 TGAAAAAGACCTCGGCGTGTGACCCAATGCTCAACTCACGTCTTGCATTACGAGTTGATTTGTTG
125 TTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTG
* * * *
49612283 --AAAATCATAAATTG-AAAATACCTCAGCGTGCGACCTGAG
188 AAAAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * * *
49612322 GCTCAACTCAACTTTCGCATTATGAGTTGATTTTTGGAAAACCGAAATTTAAAAAATACCTTGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATC-AAAATT-GAAAATACCTCGGC
* ** * *
49612387 ATGTG--TTGAAGGCTCAACTCACCTCTCGCATTATAAGTTGATTTTTGAAAAAATAGAAATTGA
64 GTGTGACCCG-AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATT-T
*
49612450 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTGACCTCTCGCATTATGAGTTGATTTTTGAAAA
127 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* *
49612515 CATAGAAATTGAAAAATACCTCGGCGTGTG-CCCGAA
192 AATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* **
49612551 GCTCAACACACCTCTCGCATTATGAGTTGA-TTTTTGAAAA-CAACGAAATTGAAAATACCTTAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATC-A--AAATTGAAAATACCTCGG
* * * *
49612614 CGTGTGACCCGAGGCTGAACTCAGCTCTCGCATTATGAGTAGACCTTTTT---AAAATCATAAA-
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAAT-AGAAAT
* ** * * *
49612675 TTGAAAATACCTTAGTGTGAGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-
125 TTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA
* * * * * *
49612739 AAAAAGAGAAATTTAAAAAATACATCGGCATGT--CTTCAAG
189 AAAAATAGAAA-TTGAAAAATACCTCGGCGTGTGAC-CCGAG
* * *
49612779 GCTCAACTCACATCTCGCATTATGAGTTGA-TTTTTGAAAAAATAAAAATTGAAAAATACCACGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCAAAATTG-AAAATACCTCGG
* * * * *
49612843 CGTGTG-CCCGAGGCACAACTTACCTCTCGCATTATAAGTTGACTTTTGAAAAAATAGAAA-TTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
* * * *
49612906 AAAATACCTCGACGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGACTTGATTTCTTTGAA
128 AAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAA
* *
49612971 AAACAT--AAATTGAAAAATACCTTGGCGTGCGACCCGAG
190 AAA-ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * * *
49613009 GCTCGACCCACCGCTCGCATTATGAGTTGATTTTTTGAAAATCATCAATTCAAAATATCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
* * * * * * * * *
49613074 TGCGACCTGATGCTCAACTCACCTCTTGCATTAAGAATTCATTTTTG-AAAAATAGATATCTAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAAT-T-TA
* ** * * * *
49613138 AAAATACCTCGGCATGTGTTCGACGCTCAACTCACCTCTCACATTATGAGTTCATTTTTGGAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
** * * *
49613203 CCAAAAATTG-AAAATACCCCGGCGTGTGACCCAAG
193 ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * *
49613238 GCTCAACTCACATCTTGCATTATGAGTTGATTTTTCTAAAAAATTATAACA-TGAAAAAGACTTC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-T-GAAAATCA-AA-ATTG-AAAATACCTC
* * * *
49613302 AGCGTGTGACCCGAGGCTCAAGTCACATCTCGCATTATGAGTTGATTTTTTG--AAAATCATAAA
61 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAA
* * * * *
49613365 -TTGAAAATACCTCAGCGTGCGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTGTTG
124 TTTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG
* * * **
49613429 AAAAAAATTA-AATTTAAAAAATACCTCGGCATGTG-TTCGAG
188 -AAAAAA-TAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* *
49613470 CCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAA-CATAGAAATTAAAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATC--A-AAATT-GAAAATACCTCG
* * *
49613533 GCATGTG-CCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAA-ACGAAA-C
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATA-GAAATT
* * * * * * ***
49613595 TAAAAATAACTCAGCGTGTGACTCGAGGCTCAACTTATCTCTCGCATTATGAGTAGATTTTTTTT
126 TAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * * ** *
49613660 TAAATCATAAATTG-AAAATAGCTTAGCGTGCG-CCCTGAG
190 AAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCC-GAG
* * * * *
49613699 GCTTAACTCACCTCTAGCATTATGAGTTGA-TTTTTCACAAA-CAAAAATTTAAAAATACTTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGA-AAATC-AAAA-TTGAAAATACCTCGG
* ** *
49613762 CATGTG-TTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAATAGAAATTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAATAGAAATTT
* * * * * * *
49613826 AAAAATACCACGCCGTGTTCCCGAGGCCCAACTCAACTCACGCATTATGAGTTGACTTTTGAAAA
127 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* * *
49613891 AATAGAAACTG-AAAATACCTCGGTGTGTGATCCGAG
192 AATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* *** * *
49613927 GCCCAACTCA-CTCCTCTTTTTATGAGTTGATTTTTTTCGAAAAACATAAATTGAAAAATATCTC
1 GCTCAACTCACCT-CTCGCATTATGAGTTGA-TTTTTT-GAAAATCA-AAATTG-AAAATACCTC
* * * * * *
49613991 GGCATATGACCCGAAGCTCGACTCACCGCTCGCATTATGAGTTGATTTTTTG--AAAATCATAAA
61 GGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAA
* * * * ** * * * *
49614054 -TTGAAAATATCTCAGCATACGACCTGAGCCTCAACTCACCTCTCGCATTAAGAATTGATTTTTG
124 TTTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG
* * * ** *
49614118 -AAAAACAGATAATTAAAAAATACCTCGGCATGTG-TTCGAC
188 AAAAAATAGA-AATTGAAAAATACCTCGGCGTGTGACCCGAG
* * *
49614158 ACTCAACTCACCTCTCGCATTATGAGTTCA-TTTTTGACAAAACAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGA-AAATCA-AAATTGAAAATACCTCGGC
* * *
49614222 GTGTGACCCAAGGCTCAACTCACCTCTCACATTATGAGTTGATTTTTTTGAAAAACAT--AACTT
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAA-ATAGAAATT
* * ** * * * * * * *
49614285 GAAAAATACTTTAGTGTGTGGCCTGAGGCTCAACTCACATATCACATTATAAGTTCATTTTTTG-
126 TAAAAATACCTCGGCGTGT-GCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGA
* * * * *
49614349 -AAAATCGTAAATTG-AAAATACCACAGCGTGCGACCTGAG
189 AAAAATAG-AAATTGAAAAATACCTCGGCGTGTGACCCGAG
** * * *
49614388 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAAGAAATTGAATGCATACTTCAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAA--AATACCTCGG
* ** * * * ** *
49614452 CATGTG-TTCTAGGCTCAACTGACCTCACGCATTATGAGTTGATTTTAAAAAAAAATAGAAATTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTT-TGAAAAAATAGAAATTT
* * * *
49614516 AAAAATACCACGGCGTGTGCCCAATGCTCAACTCACCTCTCGCATTATGAGTTGACTTTTGAAAA
127 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
*
49614581 AATAGAAATT-AAAAATACCTCGGCTTGTGACCCGAG
192 AATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * ** * *
49614617 ACTCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATCATAAAGTGAAAATACCTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
* * *
49614682 TGCGACCCGAGGTTCAACTCACCTCTCACATTATGAGTTGATTTTTGAAAAACA-A-AAATTTAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ATAGAAATTT-A
* * **** *
49614745 AAAATACCTCGACATGTGTTTTAGGCTCAACTCATCTCTCGCATTATGAGTTGATTTTTGAAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* * *
49614810 CTAGAAATTGAAAAATACCCCAGCGTGTG-CCCGAG
193 ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * *
49614845 GCTCAACTCACATCTTGCATTATGAGTTGA-CTTTAGAAAAAACAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTGAAAATACCTCGGC
* * * *
49614909 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAATTGGTTTTTG-AAAAATATATATTTAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT-A
* * ** * *
49614973 AAAATACCACGGCATGTGTTCGACGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* * ** * * * * * * * * * ** *
49615038 ACATCACCTCT-CAAAAGA-GTTGACTTTTTAAAAAGCAAAA
193 ATA-GAAAT-TGAAAAATACCTCGGC-GTGT---GACCCGAG
** * * * * * * ** *** * ***
49615078 ATTGAAAAT-ACCTAGGCAGGTGTTCGCGGCTCAACTCACCTCTCGCATTATGATTTGATTTTTA
1 GCT-CAACTCACCT---C------TCGC--AT-TA-TGA-GT-T-G-ATT-TTTTGAAAATCAAA
*** * * *
49615142 AAATAACAGAAATTGAAAAATACCTTGGCGTGTG-CCCGATGCTCAACTCACCTCTCGCATTATT
47 ATTG------------AAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATG
* * * *
49615206 AGTTGATTTTTGAAAAAGTAGAAA-TTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCAGC
100 AGTTGATTTTTGAAAAAATAGAAATTTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACC
* * * * * * * *
49615270 TCTCGCATTATGAGTTGACTTTTTG--GAAATCATAAATTG-AAAATACATCAGTGTGCGGCCTG
164 TCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCG
49615332 A-
227 AG
* * * * * *
49615333 GCTCAAATCACCTCTCGCATGATGAGTAGA-TTTTTGAAAAAT-AGAAATTTATAGATACCTTGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTGA-AAATACCTCGG
** ** *
49615396 CACGTG-TTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTGA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
* * * *
49615460 AAAATACCACGGAGTGTGCCCGAGGCTCAACTCACCTCTCACATTATGAGTTGACTTTTGAAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* *
49615525 ATAGAAATTG-AAAATATCTCAGCGTGTGACCCGAG
193 ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* **
49615560 GCTTAACTCACCTCTTTCATTATGAGTTGATTTTTTTGAAAGA-CATAAATTGAAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTGAAA-ATCA-AAATTG-AAAATACCTCG
** * *
49615624 GCGTGTGACCCGAGGCTCAACTCACGACTCACATTATGAGTTGATTTGTTG--AAAATCGTAAA-
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAAATAG-AAAT
* * * ** * *
49615686 TTGAAAATATCTCAGCGTACGACCCGAGGCTCAACTCAGCTCTTGCATTATGAGTTGATTTTTG-
125 TTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA
* * * * ***
49615750 AAAAACAGAAATTTAAAAATTACCTTGGCATGTG-TTTGAG
189 AAAAATAGAAATTGAAAAA-TACCTCGGCGTGTGACCCGAG
* *
49615790 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCATAAATTGAAAATACCTCAGTG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
* * * * * * *
49615855 TGCGACCTGAGGCTCAACTCAGCTCTAGCATGATGGGTTGATTTTTG-ACAAATAGAAATTTAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT-AA
** * ** ** *
49615919 AAATAGATTGGCACGTGTTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAACAA
129 AAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
* * * *
49615984 TAGAAATTGAAAAATACCACGGTGTGTG-CTCAAG
194 TAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* ** * * *
49616018 GCTCGACTCACCTCTAACATTTTGAGTTGA-CTTTTGAAAAAACAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTGAAAATACCTCGGC
* * * ** * * *
49616082 GTGTGACCCAAGGCTCAACTCACCTCTCACATTAAGAGTTGATTTTTTTTCAAAAACATAAATTG
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAATAGAAATTT
* * * * * * * *
49616147 AAAAAGACATCGGCGTGTGACCCGATGCTCAACTCACGTCTCGCGTTACGATTTGGTTTGTTG--
127 AAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAA
* * * ** *
49616210 AAAATCATAAATTG-AAAATACCTCAGCTTCCGACCTGAG
190 AAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49616249 GCTCAACTCAACTTTCGCATTATGAGTTGA-TTTTTGAAAA-AAAGAATTTAAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCAA-AA-TT-GAAAATACCTCGG
* ** * * * *
49616312 CATGTG-TTCGAGGCTCAACTCACTTCTCGCATTATAAGTTGATTTTT-AATAGAATATAAATTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA-AAAATAGAAATT-
* * * *
49616375 AAAAAATACATCGGCGTGTGCCCGAGGCTCAACTGACCTCTCGCATTATGAGGTGATTTTTGAAA
126 TAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* * *
49616440 ACATAGAAATTGAAAAATACGTCGGCGTGTG-CCCGAA
191 AAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * **
49616477 GCTCAACACACCTCTCGCATTATGAGTTGA-TGTTTGAAAA-CAACGAAATTGAAAATACCTCAA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATC-A--AAATTGAAAATACCTCGG
* * * * *
49616540 CGTGTGACCCGAGGCTGAACTCAGCTCTCGCATTATGAGTAGATCTTTT--TAAAATCATAAA-T
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAAAT-AGAAATT
* ** * *
49616602 TGAAAATACCTCAACGT-TCGACCTGAGGCTCAACTCACCTCTAGCATTATGAGTTGATTTTTG-
126 TAAAAATACCTCGGCGTGT-G-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA
* * * * ** *
49616665 AAAAAGAGAAATTTAAAAAATACCACGGCATGTG-TTCAAG
189 AAAAATAGAAA-TTGAAAAATACCTCGGCGTGTGACCCGAG
* * *
49616705 GCTCAACTTACCTCTCGCATTATGAGCTGA-TTTTTGAAAAAAT-AGAAATTGAAAAATACCACG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCA-AAATTG-AAAATACCTCG
* * * * * * * *
49616768 TCGTCTG-CCCGAGGCTTAACTCACCTCTCACATTGTAAGTTGACTTTTGAAAAAATAGAAATTG
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT
* * * *
49616832 AAAAATACCACGTCGTCTGCCCGAGGCTTAACTCACCTCTCGCATTATGAGTTGATTTTTTTGAA
127 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAA
* **
49616897 AAACAT--AAATTGAAAAATACCTTGGCGTGCCACCCGAG
190 AAA-ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * * *
49616935 GCTCGACTCA-CTGCTCGTATTATGAGTTGATTTTTTGAACATAATAAATTCAAAATATCTCAGC
1 GCTCAACTCACCT-CTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGC
* * * * * *
49616999 GTGCGACCCGATGCTCAACTCACCTCTTGCATTAGGAATTGATTTTTGAAAAAA-AGATATTTAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTAA
* ** * *
49617063 AACATACCTCGGCATGTGTTCGACGCTCAACTCACCTCTCGCATTATGAGTTCATTTTTGGAAAA
129 AA-ATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAA
* * * *
49617128 CA-AGAAATT-AAAAATACCTTGGCGTGAGACCCAAG
192 AATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49617163 ACTCAACTCACCTCTCGCATTATGAGTTGA-TATTTGAAAAACATAAATTTAAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAA-TT-GAAAATACCTCGG
* ** * * *
49617227 CATGTG-TTCGAGCCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAACACT-GAAATTA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AATAGAAATTT
**
49617290 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCTTATTATGAGTTGA--TTT-AAAA
127 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* * * * * *
49617352 AAAACGAAACT-AAAAATAACTCAGCGTGTGACTCAAG
192 AATA-GAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * *
49617389 GCTCAAC-CTAGCGCTCGCATTATGAGTTGATTTTTTGAAAATCGTAAATTGAAAATACCACAGC
1 GCTCAACTC-ACCTCTCGCATTATGAGTTGATTTTTTGAAAATC-AAAATTGAAAATACCTCGGC
* * * *
49617453 GTGCGACCCGAGGCACAACTCACCTATCGCATTATGAGTTGATTTTTGAAAAAAAAAGAAATTTA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAATAGAAATTTA
* * ** **
49617518 AAACATACTTCGGCATGTGTTCGATCCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
128 AAA-ATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* * *
49617583 AATAGAAATTGAAAACTACCAT-GGCGTGTG-CCTGAT
192 AATAGAAATTGAAAAATACC-TCGGCGTGTGACCCGAG
* * * *
49617619 GCTCAACTCACCTC-CGCATTATGAGTTGA-CTTTTGAAAAACAGAAATTAAAAATACCTCGGCT
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
* * * * * * *
49617682 TGTGACTCGAGGCTCAACTCACCTCTCGCATTATAAGTTCATTTTAG-GAAAATCATAAA-TTGA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAT-AGAAATTTAA
* ** * *
49617745 TAATACCTCAACGTGCGACCCGAGGTTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
129 AAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* * * **
49617810 CATA-AATTTAAAAAATACCTCGGCATGTG-TTCGAG
193 -ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * *
49617845 CCTCAATTCACCTCTCGCATTATGGGTTGA-TTTTTGAAAA-CACTGAAATTAAAAAATACCTCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA---AAATT-GAAAATACCTCG
* * *
49617908 GCGTGTG-CCCGAGGCTCAACTCA-CTCTCGTATTATGAGTTGA-TTTTCAAAAAA-ACGAAA-C
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATA-GAAATT
* * * * * * * * **
49617968 TAAAAATAACTCAGCTTGTGACTCAAGGCTCAACTTAGCTCTCGCATTATGAGTAGATTTTT-TT
126 TAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * * ** ** *
49618032 AAAATCATAAACTG-AAAATAGCTTAGCGTACGACCTGAG
190 AAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49618071 GCTCAACTTACCTCTCGCATTATGAGTTGA-TTTTTCACAAA-CAAAAATTTAAAAAATACTTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGA-AAATC-AAAA-TT-GAAAATACCTCG
* ** ** * * *
49618134 GCATGTG-TTCGAGGCTCAACTCACCTCTCGCATTACAAGTTGATTTTTGAATAAACAAAAATTG
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATT-
* * * *
49618198 AAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTGACCTCTCGCATTATGAGATGATTTTGGAAA
126 TAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* *
49618263 ACATAGAAATTGAAAAATACCTCGGCGTGTG-CCCGAA
191 AAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * **
49618300 GCTCAACACACCTCTCGCATTATGAGTTGA-TTTTTGAAGACAACGAAATTGAAAATACCTTAGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAA-A-ATCAAAATTGAAAATACCTCGGC
* * * * * * *
49618364 ATGTGACCCGAGGGTGAACTCAGCTCTCGCATTATGAGTAGATCTTTT--TAAAATCATAAA-TT
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAAAT-AGAAATTT
* * * * *
49618426 GAAAATACCTCAGCGTGCGACCTGAGGCTTAACTCACCTCTCGCATTATGAGTTGATTTTTG-AA
127 AAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* * **
49618490 AAATAGAAATTTAAAAAATACCTCGGCATGTG-TTCGAG
191 AAATAGAAA-TTGAAAAATACCTCGGCGTGTGACCCGAG
*
49618528 GCTCAACTCACATCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAATTGAAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCA-AAATTG-AAAATACCTCG
* ** * *
49618591 GCATGTG-TTCGATGCTCAACTCACCTCTCGCATTATGAGTTCATTTTTGAAAAAATAGAAA-TT
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT
* *
49618654 GAAAATACCTCGGCGTGTGACCCAAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTG
127 AAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA---TTTTTG
* * * * * *
49618719 AAAAACAT--AACTTGAAAAATACTTCAGTGTGTGGCCTGAG
188 AAAAA-ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * * * * * * *
49618759 GGTCAACTAACATATCACATTATAAGTTGATTTTTTGAAAATCGTAAATCGAAAATACCACAGAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATC-AAAATTGAAAATACCTCGGCG
*
49618824 TGCGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA-AGAAATTTAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTAAA
* * * ** *
49618888 ACATACTTTGGCATGTGTTCGAGCCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
130 A-ATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
* *
49618953 TAGAAATTGAAAAATACCACGGCGTGTG-CCCGAT
194 TAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * *
49618987 GCTCAACTCACCTCTCGCATTATGAGTTGA-CTATTGAAAAAAT-AGAAATTAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCA-AAATTGAAAATACCTCGG
* * * * * *
49619050 CTTGTGACCCGAGGCTCAACTCACCTCTCGCATTATAAGTTCATTTTAG-GAAAATCATAAA-TT
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAT-AGAAATTT
* * * * * * *
49619113 GAAAATACCTCAGCATGCGACCCGATGTTCAACTCACCTCTCGCATTATGAGTTGATATTTGAAA
127 AAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* * ****
49619178 AACA-A-AAATTTAACAAATACCTCGGCATGTG-TTTTAG
191 AA-ATAGAAATTGAA-AAATACCTCGGCGTGTGACCCGAG
* * * * * * *
49619215 GCTGAACTCACATCTTGCATTATGAGTTTA-CTTTAGAAAAAACAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTGAAAATACCTCGGC
* * * * * *
49619279 GTGTGACCTGAGGCTCAACTCACCTGTCGCATTATGAATTGCTTTTTG-AAAAATATATATTTAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT-A
* * ** * * ** *
49619343 AAAATACCACGGCATGTGTTCAACGCTCAACTCATTTCTCGTATTATGAGTTGATTTTTGAAAAA
128 AAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG--AAA
* * * * ***
49619408 ACATCACCTCTCAAAAGAGTTGACTTTTTAAAAAACAAAAATTGG-AAAT-ACCTCGGCAG
191 A-A--A----T-AGAA-A-TTGA------AAAATAC----CTCGGCGTGTGACC-C-G-AG
*** * ** * * * * * * **
49619467 G-TGTTCGCGGCTCAACTCACCTAT-CGCATTATGATTTGATTTTTAAAATAACAGAAATTGAAA
1 GCTCAACTCACCTC-TCGCA-TTATGAG-TTGATTTTTTG------AAAAT--CA-AAATTG-AA
* * * * **
49619530 AATACCTTGGCGTGTG-CCCGATGCTCAACTCACCTCTCGCATTATTAGTTTATTTTAAAAAAAA
53 AATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
* * * * * *
49619594 TAGAAA-TTGAAAATACCTCGGCGTGTGACGCGAGTG-TCAATTCAGCTCTCGCATTATCAATTG
118 TAGAAATTTAAAAATACCTCGGCGTGTG-CCCGAG-GCTCAACTCACCTCTCGCATTATGAGTTG
* * * * * ** **
49619657 AGTTTTTG--GAAATCATAAATTG-AAAGTACCTCAGTGTACGACGTGAG
181 A-TTTTTGAAAAAAT-AGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * *
49619704 GCTCAACTCACCTCTCGCCTGATGAGTTGA-TTTTTGAAAAATAAAAATTTATAAATACCTTGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCAAAATTGA-AAATACCTCGGC
*** ** * * * *
49619768 ACATG-TTCGAGGCTCAACTCACCTCTCGCATTAAGAGTTGATTTCTAAAAAAATAGAAATTGAA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTAA
* * * **
49619832 AAATACCAT-AGAGTGTGCCCGAGGCTCAACTCACCTCTCACATTATGAGTTGACATTTGAAAAA
129 AAATACC-TCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
* * *
49619896 ACAAAAATTG-AAAATACCTCGGCATGTGACCCGAG
193 ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* *
49619931 G-TCAACTCACTTCTCGCATTATGAGTTGATTTTTTTGAACGA-CATAAATTGAAAAATACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTTGAA-AATCA-AAATTG-AAAATACCTCG
* * *
49619994 GCGTGTGACCCGAGGCTCAACTCACGTCTCGAATTATGAGTTGATTTATTG--AAAATCGTAAA-
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAAATAG-AAAT
* ** * * *
49620056 TTGAAAATACCTCAACGTGCGACCCGAGGTTCAACTCAGCTCTCGCATTATGAGTTGATTTTTGA
125 TTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA
* * ***
49620121 AAAACA-A-AAATTTAAAAATTACCTCGGCATGTG-TTTGAG
189 AAAA-ATAGAAATTGAAAAA-TACCTCGGCGTGTGACCCGAG
* * ** *
49620160 GCTCAACTCACCTTTCGCATTATAAGTTGA-TTTTTGAAAAAAGAGAAATTGAAAAAACACCTCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTG--AAAATACCTCG
* * * *
49620224 GCATGTG-CCCGAGGCTCAACTCACCTCTCGTATTATTAGTTGATTTTTTG--AAAATCATAAA-
62 GCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAAT
* * * * * * * *
49620285 TTGAAGATACCTCAGTGTGCGACCTGAGGCTCAACTCAGCTCTCGCATGATGAGTTGATTTTTG-
125 TTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA
* * * * ** **
49620349 AAAACTAGAAATTTAAAAAATAGCTTGGCACGTG-TTCGAG
189 AAAAATAGAAA-TTGAAAAATACCTCGGCGTGTGACCCGAG
** * * * * *
49620389 GCTCAACTCATGTCTCGCATTATGAGTTGATTTTTTAAAAAATAAAAATTGAAAATAGCACGGAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTT-GAAAATCAAAATTGAAAATACCTCGGCG
* **
49620454 TGTGA-CCGAGGCTCAACTCACCTATCGCATTATGAGTTG-TATTTTGAAAAAATAGAAATAGAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAAATAGAAATTTAA
* *
49620517 AAAAACCTCGACGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGACTTTTTTGAAA
129 AAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAA
*
49620582 AACAT--AAATTGAAAAATACCTCGGCGTGTGACCCGGG
191 AA-ATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * *
49620619 GCTCAACTCACGTCTTGCATTATGAGTTGATTTGTTGAAAATCATAAATTGAAAATAACTCAGCG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
* * * ** *
49620684 TGCGACCCGATGCTCAACTCAGCAGTCGCATTATGAGTTGATTTTTG-AAAAACAGAAATTTAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTAAA
* ** * *
49620748 AATTACCTCGGCATGTGTTCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAAA
130 AA-TACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
* * *
49620813 TAGAAACTGAAAAATTACCTCAGTGTGTG-CCCGAG
194 TAGAAATTGAAAAA-TACCTCGGCGTGTGACCCGAG
* ** *
49620848 GCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAATTGAAACTAATTCGA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCA-AAATTGAAAATACCTCGG
* * * * *** *
49620911 CGTGTGA-CCGAAGCTCAACTCACCTCACGTATTTTGAGTT-ATTTTTTTTGAAAATCATAAA-T
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAT-AGAAATT
* * * * * ** * *
49620973 GAAAAATACCTCAGCGTGCGACTCAAGGCTTTACTCACCTCACGTATTATGAGTTGATTTTTG-A
126 TAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA
* * * * *** *
49621037 AAAATAGAAATTTAAAAAGTACATCTGCATG-GGTTCTAG
190 AAAATAGAAATTGAAAAA-TACCTCGGCGTGTGACCCGAG
* **
49621076 GCTCAACTCACCTCTCGCATTATTAGTTGA-TTTTTGAAAAAAAAGAAATTGAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTG-AAAATACCTCGG
* * * *
49621140 CGTGTG-CCTGAGGCTCAACTCACCTCTCGCTTTATGAGTTGACTTTTGAAAAAATAGAAA-TTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
*
49621203 AAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTCAAAA
128 AAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* *
49621268 AATAGAAATTG-AAAATTCCTCGACGTGTGACCCGAG
192 AATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * * * *
49621304 GGTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTAAAATCATAAATTTAAAATTCCTCAGCA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
* * * * * * *
49621369 TTTGACCCGAGGCTCAAATCTCCTATTGCATTATGAGTTGATTTTTGTAAAACA-A-CAATTTAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAATAGAAATTT-A
* * * *
49621432 AAAATACCTCGACATGTGTTCACGA--CTCAACTCACCTCTCGCATTATGATTTGATTTTT-AAA
128 AAAATACCTCGGC--GTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* * * * * *
49621494 ATAACAAAAATTGAAAAATACCTTGACATGTG-CCCGAT
191 A-AATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * *
49621532 GCTCAACTCACCTCTCGCATTAAGAGTTGATTTTTTGAAAATTATAAATTGAAAATACCTC-GTG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCA-AAATTGAAAATACCTCGGCG
* *** * * *
49621596 TGCGAATTGAGGCTCAACTCACCTCTTGCTTTATGAGTTGATTTTTG-AAAAACAGAAATTTAAA
65 TGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT-AA
* * **
49621660 AAATACCTTGGCATGTGTTCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
129 AAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
* *
49621725 TAGAAATTAAAAAATAACAT-GGCGTGTG-CCCGAG
194 TAGAAATTGAAAAAT-ACCTCGGCGTGTGACCCGAG
* *
49621759 GCTCAACTCACCTCTCGCATTATGAGTTGA-CTTTTGAAATAAT-AGAAATTGAAAATACGTCGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AA-AATCA-AAATTGAAAATACCTCGG
* * * * * *
49621822 TGTGTGACCTGGGGCTGAACTCACCTCTGGCATTATGAGTTGATTTTTGAAAAAATAGAAA-TTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
* * * *
49621886 AAAATTCCTCGGCATGT-CTACGAGGCTCAACTCACCTCTCACATTATGAGTTGATTTTTGAAAA
128 AAAATACCTCGGCGTGTGC-CCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
*
49621950 AACAGAAATTGAAAAAATACCTCGGCGTGTG-CCCGAG
192 AATAGAAATTG-AAAAATACCTCGGCGTGTGACCCGAG
* * * * * * * * *
49621987 GTTCAACTTACCTCTCACGTTATGAGTTGA-TATGTGAAAAAAT-AGAAACTGAAAATAACTCGA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCA-AAATTGAAAATACCTCGG
* * * * ** ** ** **** *** ***
49622050 CGTGTGACCTGAGGCTCAAATCA--T-T--AATTA-AAAAT-ACCTCAGCGTCCAACCCAAGGCT
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAATAGAAATTT
* * ** * *** * * * * * *** **
49622108 -CAACTCACCT-ATCGTAT-TATGA-G-T----TGA-TTTTTG-A--A-AAACAGAAATTT-AAA
127 AAAAAT-ACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
* * ** *
49622158 AAATAC--------------CTCGGCTTGTG-TTCTAG
191 AAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * * *
49622181 GCTCAACTCACCTCTCGCATTATTAGTTGA-TTTTTGAAAAAACAAAAATTGAAAAATACATTGG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATC-AAAATTG-AAAATACCTCGG
*
49622245 CGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAA-TTG
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTA
* * * *
49622308 AAAATAACTCGGCGTGTGACCGGAGGGTCGAA-TCACCTCTCGCATTATGAGTTGATTTTTTAGA
128 AAAATACCTCGGCGTGTG-CCCGAGGCTC-AACTCACCTCTCGCATTATGAGTTGATTTTTGA-A
*
49622372 AAAACAGAAATTG-AAAATACCTCGGCGTGTGACCCGAG
190 AAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * ** * *
49622410 ACACAACTCACCTCTCTAATTATGAGTTGA-TTTTTGAAAAAAT-AGAAATTGAAAATTCCTCAG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG--AAAATCA-AAATTGAAAATACCTCGG
* * *
49622473 CATGTGACCCGAGTCTCAACTCACCTCTCGCATTATGAGTTGGTTTTTG-AAAAATAGAAATTTA
63 CGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTT-
* * ** *
49622537 AAAAATACCTTGGCATGTGTTCGAGGCTCAACTCACCTCTCGCATTATGATTTGATTTTTGAAAA
127 AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* * *
49622602 AATAGAAATTAAAAAATACCACGGCATGTG-CCCGAG
192 AATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAG
* * *
49622638 GCTCAACTCACATCTCGCATTATGAGTTGA-GTTTTGAAAAATTAGAAATTGAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCA-AAATTGAAAATACCTCGGC
* * *
49622702 GTGTGACCCGAGGCTCATCTCACCTCTCGCATTATGAGTAGATTTTTGAAAAAAATAGAAATTGA
64 GTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAATAGAAATTTA
49622767 AAAATA
128 AAAATA
49622773 ATTCTTGAAA
Statistics
Matches: 15498, Mismatches: 3118, Indels: 1967
0.75 0.15 0.10
Matches are distributed among these distances:
193 5 0.00
194 61 0.00
195 15 0.00
196 1 0.00
197 1 0.00
199 8 0.00
200 13 0.00
201 3 0.00
202 2 0.00
203 1 0.00
204 1 0.00
208 2 0.00
209 10 0.00
210 7 0.00
211 1 0.00
212 1 0.00
213 7 0.00
214 3 0.00
215 8 0.00
219 10 0.00
220 123 0.01
221 208 0.01
222 267 0.02
223 253 0.02
224 233 0.02
225 332 0.02
226 786 0.05
227 1635 0.11
228 4518 0.29
229 2965 0.19
230 1891 0.12
231 983 0.06
232 328 0.02
233 63 0.00
234 22 0.00
235 13 0.00
236 12 0.00
237 13 0.00
238 16 0.00
239 5 0.00
240 8 0.00
241 14 0.00
242 14 0.00
243 5 0.00
244 10 0.00
245 12 0.00
246 28 0.00
247 6 0.00
248 6 0.00
249 13 0.00
250 11 0.00
251 43 0.00
252 79 0.01
253 47 0.00
254 49 0.00
255 43 0.00
256 17 0.00
257 6 0.00
258 9 0.00
259 11 0.00
260 38 0.00
261 139 0.01
262 64 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (228 bp):
GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAATCAAAATTGAAAATACCTCGGCGT
GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTTAAAA
ATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATA
GAAATTGAAAAATACCTCGGCGTGTGACCCGAG
Found at i:49604498 original size:30 final size:31
Alignment explanation
Indices: 49604463--49604524 Score: 117
Period size: 30 Copynumber: 2.0 Consensus size: 31
49604453 TGTTCGAGGC
49604463 TCAAATCACCTCTCGCA-TATGAGTTGATTT
1 TCAAATCACCTCTCGCATTATGAGTTGATTT
49604493 TCAAATCACCTCTCGCATTATGAGTTGATTT
1 TCAAATCACCTCTCGCATTATGAGTTGATTT
49604524 T
1 T
49604525 AGAAAAAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 17 0.55
31 14 0.45
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.39
Consensus pattern (31 bp):
TCAAATCACCTCTCGCATTATGAGTTGATTT
Found at i:49604717 original size:74 final size:75
Alignment explanation
Indices: 49604493--49622068 Score: 10724
Period size: 76 Copynumber: 230.1 Consensus size: 75
49604483 GAGTTGATTT
* * *
49604493 TCAAATCACCTCTCGCATTATGAGTTGATTTTAGAAAAAACAAAATTGAAAAA-ACCCACGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTGAAAAATA-CCTCGGCGT
49604557 GTGCCCGA-GC
65 GTGCCCGAGGC
* * * *
49604567 TCAACTCACCTCTTGCATTA-GAAG-TGATTTTTG-AAAAACAAAAATTTATAAATTACTTCGGT
1 TCAACTCACCTCTCGCATTATG-AGTTGATTTTTGAAAAAAC-AAAATTGA-AAAATACCTCGG-
* **
49604629 AG-GTGTTCGA-GC
62 CGTGTGCCCGAGGC
*
49604641 TCAACTCA-CTCTCGCATTATGAGTTGATTTTTGAAAAAACAAGAAATTGAAAAAT-TCTCGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-A-AAATTGAAAAATACCTCGGCG
49604704 TGT-CCCGAGGC
64 TGTGCCCGAGGC
* * * * * *
49604715 TCAACTCACCTCTCGTATTATGAGTTGACTTTTGAACAAATAGAAATT--AAAATACTTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* * *
49604778 CTGACTGAGGC
65 GTGCCCGAGGC
* * *
49604789 TTAACTAACCTCTCGCATTATGAGTTGATTTATTTG-AAAAACAAAATTG-AAAAT-CGTCGG-G
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAAACAAAATTGAAAAATACCTCGGCG
49604850 TGTGACCCGAGGC
64 TGTG-CCCGAGGC
* * * *
49604863 TCAACTCAACTCTCGCATTATGATGATT-TTTTTTG-AAAATCATAAATTG-AAAATACCTCAGC
1 TCAACTCACCTCTCGCATTATGA-G-TTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
* *
49604925 GTGCGACCTGAGGC
63 GTGTG-CCCGAGGC
* *
49604939 TCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGACTAAAATTGAAAAAATACCTCGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTG-AAAAATACCTCGGCG
49605004 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* ** * * *
49605016 TCAACTCACCTCTCACATTAAAAGTTGAATTTTGAAAAAACAGAAATTCAAAAATACCTTGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49605081 GTGACCCGAGG-
65 GTG-CCCGAGGC
* * * * *
49605092 TTAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAAATA-TAAATTGAAAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAA-ACAAAATTGAAAAATACCTCGGC
** * *
49605156 GTGTATCGGCA-CC
63 GTGTGCCCG-AGGC
* * * ** * * *
49605169 TTAACTCACATCTCGCACTATGAGTTGATTTTTTTAAAATCATAAATT-AAAAATATCTCAGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
**
49605233 GCAACCCGAGGC
65 G-TGCCCGAGGC
* * * * * *
49605245 TCAACTCACCTCTCGCATTATGA-ATGATTTTT-TAAAAA-TATA-TAAAAAATACCAT-GGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTGAAAAATACC-TCGGCGT
** *
49605305 GTGTTCGACGC
65 GTGCCCGAGGC
* ** * *** * ** **
49605316 TCAACTCATTGAAAAACAC-CTCGGCGTGTGCCGAG--GCTCAACTCACCACTCAAAGGAGTTGA
1 TCAACTC--------AC-CTCTC-GCAT-T-ATGAGTTGAT-TTTTGAAAAAACAAA--A-TTGA
* ** * * *
49605378 CTTTTGAAAAAAAATTGAAAATCCTGTGCGTGTGACTCGAGGC
50 ------AAAATACCTCG-----GC-GTG----TG-CCCGAGGC
*
49605421 TCAACT-AGCC-CTCGCATTATGAGTTGATTTTTTTG-AAAAACATAAATTGAAAAGTACCTCGG
1 TCAACTCA-CCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGG
* * *
49605483 CGCGTACCCGAGAC
62 CGTGTGCCCGAGGC
* ** *
49605497 TCAACTCACATCTCGCATTATGAGTTGATTTTT-AAAACTCAAAATTG-AAAATACCTCTGCGT-
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTGAAAAATACCTCGGCGTG
*
49605559 TCGACCGAGGC
66 T-GCCCGAGGC
* * * * * *
49605570 TCAACTCACC-CTCGCTTTATGAGTTGA-TTTTGAAAAGTAGAAATTTAAAAAATACCTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AACAAAATTGAAAAATACCTCGGCGT
** *
49605633 GTGTTCGAGCC
65 GTGCCCGAGGC
* * * *
49605644 TGAACTCACCTCTCGCATTATGATTTGATTTTTGGAAAAACTGAAATTGAAAAATACCTC-GCTG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGC-G
* **
49605708 TGTGCACGACAC
64 TGTGCCCGAGGC
* * *
49605720 TCAACTCACCTCCCGCATTATGAGTTGATTTTGGAAAAAATAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49605784 GTGACCCAAGGC
65 GTG-CCCGAGGC
* * * * * * *
49605796 ACAACTAATCTCTCGCATTATGA-TTGATTTTTTG-AAAATCATTAATTG-AAAATACCTCAGCT
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* * *
49605858 TGCGACTGAGGC
64 TGTGCCCGAGGC
* * * *
49605870 TCAACTCACCACTCGCATTATGAGTTGA-TTTTG-AAAAACAGAAATTTAAAAAATACCTCTGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAA-TTGAAAAATACCTCGGCG
**
49605933 TGTGTTCGAGGC
64 TGTGCCCGAGGC
* * *
49605945 TCAAATCACCTCTCGCATTATGAGTTGATTTTAGAAAAAACAAAAATTGAAAAA-ACTCACGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATAC-CTCGGCG
49606009 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * * * * *
49606021 TCAACTCACCTCT-GCATTATAAGTT-AATTTTG-AAAAACAAAAATTTATAAATACTTCGGTAG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGG-CG
***
49606083 -GTGTTTGAGGC
64 TGTGCCCGAGGC
* *
49606094 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATGGAAAAATATCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49606159 GTGCCCAAGGC
65 GTGCCCGAGGC
* * * * * *
49606170 TCAACTCACCTCTCGTATTATCAGTTGACTTTTTGAACAAATAGAAATTG-AAAATACTTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49606234 TCTAACCCGA-GC
64 TGT-GCCCGAGGC
* *
49606246 TTAACTAACCTCTCGCATTATGAGTTGATTTATTTG-AAAAACATAAATTG-AAAAT-CCGTCGG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAAACA-AAATTGAAAAATACC-TCGG
49606308 CGTGTGACCCGAGGC
62 CGTGTG-CCCGAGGC
* * *
49606323 TCAACTCAACTCTCGCATTATGAGTTGATTTTTTG-AAAATCATAAATTG-AAAATACCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49606386 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* *
49606399 TCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGACTAAAATTGAAAAAATACCTCGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTG-AAAAATACCTCGGCG
49606464 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * ** * * *
49606476 TCAACTCACCTTTCACATTAAAAGTTGAATTTTGAAAAAACAGAAATTCAAAAATACCTTGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49606541 GTGACCCGAGGC
65 GTG-CCCGAGGC
* * * * *
49606553 TCAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAATTA-TAAATTGAAAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAA-AACAAAATTGAAAAATACCTCGGC
** *
49606617 GTGTGATCG-GCACC
63 GTGTGCCCGAG--GC
* * * ** * * *
49606631 TTAACTCACATCTCGCACTATGAGTTGATTTTTTTTAAAATCATAAATT-AAAAATATCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
**
49606695 TGCAACCCGAGGC
64 TG-TGCCCGAGGC
* * * * * * * *
49606708 TCAACTCACCTCTCGCATTATGAATTGATTTTTTAAAAATATATATTTAAAAAATACCACGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACCTCGGCGT
** *
49606773 GTGTTCGAAGC
65 GTGCCCGAGGC
* * *
49606784 TCAACTCACCTCTTGTATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAACACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49606849 GTGCCCGAGGC
65 GTGCCCGAGGC
* * * * **
49606860 TCAACTCACCACT--CA-AAGGAGTTGACTTTTG--AAAA-AAAATTG-AAAATACCTATGCGTG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTGAAAAATACCTCGGCGTG
*
49606918 TGACTCGAGGC
66 TG-CCCGAGGC
* *
49606929 GCAACT-AGCCTCTCGCATTATGAGTTGATTTTTTG-AAAAACATAAATTGAAAATTACCTCGGC
1 TCAACTCA-CCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
*
49606992 GTGTGACCCGAGAC
63 GTGTG-CCCGAGGC
* ** *
49607006 TCAACTCACATCTCGCATTATGAGTTGATTTTT-AAAACTCATAAATTG-AAAATACCTCTGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49607069 -TCGACCCGAGGC
65 GT-G-CCCGAGGC
* * * * * *
49607081 TCAACTCACCTCTCACTTTATGAGTTGATTTTTGAAAAGTA-GAAATTAAAAAAATACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AACAAAATT-GAAAAATACCTCGGCG
** *
49607145 TGTGTTCGAGCC
64 TGTGCCCGAGGC
* * * * * *
49607157 TGAACTCACCTATCGCATTATGATTTGATTTTTGGAAAAACTGAAATTGAAAAATACCTCGCCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCGT
* *
49607222 GTGCACGACGC
65 GTGCCCGAGGC
* * *
49607233 TCAACTCACCTCCCGCATTATGAGTTGA-TTTGGAAAAAATAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* *
49607296 GTGACCAAGGC
65 GTGCCCGAGGC
* * * *
49607307 TCAACTCATCTCTCGCATTATGAGTTGATTTTTTTG-AAAATCATTAATTG-AAAATACCTCAGC
1 TCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
* *
49607370 GTGCGACCTGAGGC
63 GTGTG-CCCGAGGC
* * * * *
49607384 TCAATTCACCACTCGCATTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAAATACCTCTGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAA-TTGAAAAATACCTCGGCG
**
49607448 TGTGTTCGAGGC
64 TGTGCCCGAGGC
* * * *
49607460 TCAAATCACCTCTCACATTATGAGTTGATTTTAGAAAAAACAAAAATTGAAAAA-ACCCACGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATA-CCTCGGCG
49607524 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * * *
49607536 TCAACTCACCTCTTGCATTA-GAAGTTGATTTTTG-AAAAACAAAAATTTATAAATTACTTCGGT
1 TCAACTCACCTCTCGCATTATG-AGTTGATTTTTGAAAAAAC-AAAATTGA-AAAATACCTCGG-
* **
49607599 AG-GTGTTCGAGGC
62 CGTGTGCCCGAGGC
*
49607612 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATATCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49607677 GTGCCCGAGGC
65 GTGCCCGAGGC
* * * * * *
49607688 TCAACTCACCTCTCGTATTATGAGTTGACTTTTGAACAAATAGAAATT-AAAAATACTTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* *
49607752 CTGACCTGAGGC
65 GTG-CCCGAGGC
* * *
49607764 TTAACTAACCTCTCGCATTATGAGTTGATTTATTTG-AAAAACGTAAATTG-AAAAT-CCGTCGG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAAAC-AAAATTGAAAAATACC-TCGG
49607826 CGTGTGACCCGAGGC
62 CGTGTG-CCCGAGGC
* * *
49607841 TCAACTCAACTCTCGCATTATGAGTTGATTTTTTG-AAAATCATAAATTG-AAAATACCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49607904 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* *
49607917 TCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGACTAAAATTGAAAAAATACCTCGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTG-AAAAATACCTCGGCG
*
49607982 TGTGCTCGAGGC
64 TGTGCCCGAGGC
* ** * * *
49607994 TCAACTCACCTCTCACATTAAAAGTTGAATTTTGAAAAAACAGAAATT-CAAAATACCTTGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49608058 GTGACCCGAGGT
65 GTG-CCCGAGGC
* * * *
49608070 TCAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAAATA-TAAATTGAAAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAA-ACAAAATTGAAAAATACCTCGGC
** *
49608134 GTGTGATCG-GCACC
63 GTGTGCCCGAG--GC
* * * ** * * *
49608148 TTAACTCACATCTCGCACTATGAGTTGATTTTTTTAAAATCATAAATT-AAAAATATCTCAGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
**
49608212 GCAACCCGAGGC
65 G-TGCCCGAGGC
* * * * * * *
49608224 TCAACTCACCTCTCGCATTATGAATTGATTTTTTAAAAATATATATTTAAAAAATACCAT-GGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACC-TCGGCG
** *
49608288 TGTGTTCGACGC
64 TGTGCCCGAGGC
* * * *
49608300 TCAACTCACCTCTCGTATTATGAGTTGACTTTTGAAAAAACAGAAATTGGAAAACACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49608365 GTGCCCGAGGC
65 GTGCCCGAGGC
* * * * * *
49608376 TCAACTCACCACT--CA-AAGGAGTTAACTTTTG--AAAA-AAAATTG-AAAATTCCT-GTGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTGAAAAATACCTCG-GCGT
*
49608433 GTGACTCGAGGC
65 GTG-CCCGAGGC
*
49608445 TCAACT-AGCCTCTCGCATTATGAGTTGATTTTTTTG-AAAAACATAAATTGAAAAGTACCTCGG
1 TCAACTCA-CCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGG
*
49608508 CGTGTGACCCGAGAC
62 CGTGTG-CCCGAGGC
* * ** *
49608523 TCAACTCACATCTCGCATTATGAGTTGATTTTTTAAAACTCATAAATTG-AAAATACCTCTGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49608587 -TCGACCCGAGGC
65 GT-G-CCCGAGGC
* * * * * *
49608599 TCAACTCACCTCTCGCTTTATGAGTTGATTTTTGAAAAGTAGAAATTTAAAAAATACCTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AACAAAATTGAAAAATACCTCGGCGT
** *
49608664 GTGTTCGAGCC
65 GTGCCCGAGGC
* * * *
49608675 TGAACTCACCTCTCGCATTATGATTTGATTTTTGGAAAAACTGAAATTGAAAAATACCTC-GCTG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGC-G
* **
49608739 TGTGCACGACAC
64 TGTGCCCGAGGC
* * *
49608751 TCAACTCACCTCCCGCATTATGAGTTGATTTTGGAAAAAATAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49608815 GTGACCCAAGGC
65 GTG-CCCGAGGC
* * * * * * *
49608827 ACAACTAATCTCTCGCATTATGAGTTGATTTTTTG-AAAATCATTAATTG-AAAATACCTCAGCT
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49608890 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* * * * *
49608903 TCAACTCACCACTCGCACTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAAATACCTCTGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAA-TTGAAAAATACCTCGGCG
**
49608967 TGTGTTCGAGGC
64 TGTGCCCGAGGC
* * *
49608979 TCAAATCACCTCTCGCATTATGAGTTGATTTTAGAAAAAACAAAAATTGAAAAA-ACTCACGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATAC-CTCGGCG
49609043 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * * * * * * *
49609055 TCAACTCACCTCTTGCATTATAAGTTAAGTTTTG-AAAAACAAAAATTTATAAATTACTTCGGTA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGA-AAAATACCTCGG-C
***
49609119 G-GTGTTTGAGGC
63 GTGTGCCCGAGGC
* *
49609131 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATGGAAAAATATCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49609196 GTGCCCGAGGC
65 GTGCCCGAGGC
* * * * * * *
49609207 TCAACTCACCTCTCGTATTATCAGTTGACTTTTGAACAAATAGAAATTG-AAAATACTTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* *
49609271 CTAACCCGAGGC
65 GT-GCCCGAGGC
* *
49609283 TTAACTAACCTCTCGCATTATGAGTTGATTTATTTG-AAAAACATAAATTG-AAAAT-CCGTCGG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAAACA-AAATTGAAAAATACC-TCGG
49609345 CGTGTGACCCGAGGC
62 CGTGTG-CCCGAGGC
* * *
49609360 TCAACTCAACTCTCGCATTATGAGTTGATTTTTTG-AAAATCATAAATTG-AAAATACCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49609423 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* *
49609436 TCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGACTAAAATTGAAAAAATACCTCGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTG-AAAAATACCTCGGCG
49609501 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * ** * * *
49609513 TCAACTCACCTTTCACATTAAAAGTTGAATTTTGAAAAAACAGAAATT-CAAAATACCTTGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49609577 GTGACCTGAGGC
65 GTG-CCCGAGGC
* * * * *
49609589 TCAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAATTA-TAAATTGAAAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAA-AACAAAATTGAAAAATACCTCGGC
** *
49609653 GTGTGATCG-GCACC
63 GTGTGCCCGAG--GC
* * * * * * *
49609667 TTAACTCACATCTCGCACTATGAGTTGATTTTT-TAAAATCATAAATT--AAAATATCTCAGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
**
49609729 GCAACCCGAGGC
65 G-TGCCCGAGGC
* * * * * * * *
49609741 TCAACTCACCTCTCGCATTATGAATTGATTTTTTAAAAATATATATTTAAAAAATACCACGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACCTCGGCGT
** *
49609806 GTGTTCGAAGC
65 GTGCCCGAGGC
* *
49609817 TCAACTCACCTCTCGTATTATGAGTTGA-TTTTGAAAAAACAGAAATTGAAAAACACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49609881 GTGCCCGAGGC
65 GTGCCCGAGGC
* * * * **
49609892 TCAACTCACCACT--CA-AAGGAGTTGACTTTTG--AAAA-AAAATTG-AAAATACCTATGCGTG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTGAAAAATACCTCGGCGTG
*
49609950 TGACTCGAGGC
66 TG-CCCGAGGC
* * *
49609961 GCAACT-AGCCTCTCGCATTATGAGTTAATTTTTTTG-AAAAACATAAATTGAAAATTACCTCGG
1 TCAACTCA-CCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGG
*
49610024 CGTGTGACCCGAGAC
62 CGTGTG-CCCGAGGC
* ** *
49610039 TCAACTCACATCTCGCATTATGAGTTGATTTTT-AAAACTCATAAATTG-AAAATACCTCTGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49610102 -TCGACCCGAGGC
65 GT-G-CCCGAGGC
* * * * * *
49610114 TCAACTCACCTCTCACTTTATGAGTTGATTTTTGAAAAGTA-GAAATTAAAAAAATACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AACAAAATT-GAAAAATACCTCGGCG
** *
49610178 TGTGTTCGAGCC
64 TGTGCCCGAGGC
* * * * * *
49610190 TGAACTCACCTATCGCATTATGATTTGATTTTTGGAAAAACTGAAATTGAAAAATACCTCGCCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCGT
* *
49610255 GTGCACGACGC
65 GTGCCCGAGGC
* * *
49610266 TCAACTCACCTCCCGCATTATGAGTTGATTTTGGAAAAAATAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49610330 GTGACCCAAGGC
65 GTG-CCCGAGGC
* * * *
49610342 TCAACTCATCTCTCGCATTATGAGTTGATTTTTTG-AAAATCATTAATTG-AAAATACCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49610405 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* * * * *
49610418 TCAATTCACCACTCGCATTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAAATACCTCTGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAA-TTGAAAAATACCTCGGCG
**
49610482 TGTGTTCGAGGC
64 TGTGCCCGAGGC
* * * *
49610494 TCAAATCACCTCTCACATTATGAGTTGATTTTAGAAAAAACAAAAATTGAAAAA-ACCCACGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATA-CCTCGGCG
49610558 TGTGCCCGAGGC
64 TGTGCCCGAGGC
** * * * * *
49610570 TCAACTCACCTCTTTCATTATAAGTTGATTTTTG-AAAAACAAAAATTTATAAATTACTTCGGTA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGA-AAAATACCTCGG-C
** *
49610634 G-GTGTTCGAGGT
63 GTGTGCCCGAGGC
*
49610646 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAAATTGAAAAATATCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCGT
49610711 GTGCCCGAGGC
65 GTGCCCGAGGC
* * * * *
49610722 TCAACTCACCTCTCGTATTATGAGTTGACTTTTGAACAAATAGAAATTG-AAAATACTTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49610786 CTGACCCGAGGC
65 GTG-CCCGAGGC
* * *
49610798 TTAACTAACCTCTCGCATTATGAGTTGATTTATTTG-AAAAACATAAATTG-AAAAT-CCGTCGA
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAAACA-AAATTGAAAAATACC-TCGG
49610860 CGTGTGACCCGAGGC
62 CGTGTG-CCCGAGGC
* * *
49610875 TCAACTCAACTCTCGCATTATGAGTTGATTTTTTG-AAAATCATAAATTG-AAAATACCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* **
49610938 TGCGACTTGAGGC
64 TGTG-CCCGAGGC
* * **
49610951 TCAACTCACCTCTCGCATTATGTGTTGATTTTTGAAAAGACAAAAATTGAACAAATAGATCGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAA-AAATACCTCGGCG
49611016 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * * * * *
49611028 TCAACTCACCTCTCACATTAAGAGTTTAATTTTGAAAAAACAGAAATT-CAAAATACCTTGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49611092 GTGACCCGAGGC
65 GTG-CCCGAGGC
* * * *
49611104 TCAACTCTCCTATCGAATTATGAGTTGATTTGTTTGAAAAATA-TAAATTGAAAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAA-ACAAAATTGAAAAATACCTCGGC
* *
49611168 GTGTGACCG-GCACC
63 GTGTGCCCGAG--GC
* * ** * * ** **
49611182 TCAACTCACATCTCGCACTATGAGTTGATTTTTTTAAAATCATAAA-TAAAAAATATGTCAACGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
**
49611246 GCAACCCGAGGC
65 G-TGCCCGAGGC
* * * * * * *
49611258 TCAACTCACCTCTCGCATTATGAGTTGAATTTTGAAAAATATATATTTAAAAAATACCTCAGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACCTCGGCGT
** *
49611323 GTGTTCTAGG-
65 GTGCCCGAGGC
** * * * *
49611333 TCCAACTCACCTCTCTTATTATTAATTAATTTTTGAAAAAACAAAAATTCAAAAAATACCTCGGC
1 T-CAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATT-GAAAAATACCTCGGC
* *
49611398 ATGTGCCTGAGGC
63 GTGTGCCCGAGGC
* * *
49611411 TCAACTCACCTCTAGCATTATGAGTTGACTTTTGAAAAAAAATAGAAATTG-AAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTG--AAAAAACA-AAATTGAAAAATACCTCGGC
* *
49611475 GTGTGACCTGAGGT
63 GTGTG-CCCGAGGC
* * * *
49611489 TCAACTTACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTG-AAAATTCCTCGGAGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49611553 G-ACCCGAGGC
65 GTGCCCGAGGC
* * *
49611563 TCAACTCACCTCTCGCATTATGAGTTGATTGTTTG-AAAATCATAAATTG-AAAATTCCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATT-TTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
*
49611626 TGCGACCCGAGGC
64 TGTG-CCCGAGGC
* * * *
49611639 TCAACTCACCTCTTGCATTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAAATACCTTGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAA-TTGAAAAATACCTCGGCG
** *
49611703 TGTGTTCGCGGC
64 TGTGCCCGAGGC
* *
49611715 TCAACTCACCTCTCGCATTATGATTTGATTTTT-AAAATAACAGAAATTGAAAAATACCTTGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AACA-AAATTGAAAAATACCTCGGCG
*
49611779 TGTGCCCGATGC
64 TGTGCCCGAGGC
* *
49611791 TCAACTCACCTCTCGCATTATTAGTTGATTTTTGCAAAAACAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49611855 GTGACACGAGGC
65 GTG-CCCGAGGC
* * * *** * * **
49611867 TCAACTCAGCTCTCGGATTATGAGTTGGTTTTTTCTAAATCATAAACTG-AAAATACCT--TAGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49611929 GTGCAACCTGAGGC
65 GTGC--CC-GAGGC
* ** * * * *
49611943 TCAACTCATCTCTCGCATGCTGAGTTGATCTTTT-AAAAATA-GAAATTTAAAATATACCTTGCA
1 TCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAA-ACAAAATTGAAAA-ATACCTCG-G
*
49612006 CGTGT--TCGAGGC
62 CGTGTGCCCGAGGC
* * * *
49612018 TCAACTCACCTCTCGGATTATGAGTTGATTTTTGGAAAAATAGAAATTGAAAAATACCACGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49612083 GTGCCCGAGGC
65 GTGCCCGAGGC
* ** * * * *
49612094 TCAGCTCACCTCTAACATTATGAGTTGACTTTTGAAAAAATAGAAATTG-AAAATTCCTCGGTGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
**
49612158 GTGACCTAAGGC
65 GTG-CCCGAGGC
* * * *
49612170 TCAACTCACCTCTCACATTATGAGTTAATTTTTTTG-AACAACATAAATTGAAAAAGACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
* *
49612234 GTGTGACCCAATGC
63 GTGTG-CCCGAGGC
* * * * *
49612248 TCAACTCACGTCTTGCATTACGAGTTGATTTGTTG-AAAATCATAAATTG-AAAATACCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49612311 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* * * * * * * *
49612324 TCAACTCAACTTTCGCATTATGAGTTGATTTTTGGAAAACCGAAATTTAAAAAATACCTTGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCGT
**
49612389 GTG-TTGAAGGC
65 GTGCCCG-AGGC
* *
49612400 TCAACTCACCTCTCGCATTATAAGTTGATTTTTGAAAAAATAGAAATTGAAAAAATACCTCGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTG-AAAAATACCTCGGCG
49612465 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * *
49612477 TCAACTGACCTCTCGCATTATGAGTTGATTTTTGAAAACATAGAAATTGAAAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49612542 GTGCCCGAAGC
65 GTGCCCGAGGC
* * **
49612553 TCAACACACCTCTCGCATTATGAGTTGATTTTTGAAAACAACGAAATTG-AAAATACCTTAGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AACAAAATTGAAAAATACCTCGGCGT
49612617 GTGACCCGAGGC
65 GTG-CCCGAGGC
* * * * ** *
49612629 TGAACTCAGCTCTCGCATTATGAGTAGACCTTTTT--AAAATCATAAATTG-AAAATACCTTAGT
1 TCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
* *
49612691 GTGAGACCTGAGGC
63 GTGTG-CCCGAGGC
* * * * *
49612705 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAGAGAAATTTAAAAAATACATCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACCTCGGCGT
* *
49612770 GT-CTTCAAGGC
65 GTGC-CCGAGGC
* * *
49612781 TCAACTCACATCTCGCATTATGAGTTGATTTTTGAAAAAATAAAAATTGAAAAATACCACGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA-CAAAATTGAAAAATACCTCGGCGT
49612846 GTGCCCGAGGC
65 GTGCCCGAGGC
* * * * * *
49612857 ACAACTTACCTCTCGCATTATAAGTTGACTTTTGAAAAAATAGAAATTG-AAAATACCTCGACGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49612921 GTGACCTGAGGC
65 GTG-CCCGAGGC
* * *
49612933 TCAACTCACCTCTCGCAATATGACTTGATTTCTTTG-AAAAACATAAATTGAAAAATACCTTGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA-TT-TTTGAAAAAACA-AAATTGAAAAATACCTCGGC
*
49612997 GTGCGACCCGAGGC
63 GTGTG-CCCGAGGC
* * * * * * * *
49613011 TCGACCCACCGCTCGCATTATGAGTTGATTTTTTG-AAAATCATCAATT-CAAAATATCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* * *
49613074 TGCGACCTGATGC
64 TGTG-CCCGAGGC
* * * * * * *
49613087 TCAACTCACCTCTTGCATTAAGAATTCATTTTTGAAAAATA-GATATCTAAAAAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAAT-T-GAAAAATACCTCGGC
* ** *
49613151 ATGTGTTCGACGC
63 GTGTGCCCGAGGC
* * * * *
49613164 TCAACTCACCTCTCACATTATGAGTTCATTTTTGGAAAACCAAAAATTG-AAAATACCCCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCGT
*
49613228 GTGACCCAAGGC
65 GTG-CCCGAGGC
* * * * * * *
49613240 TCAACTCACATCTTGCATTATGAGTTGATTTTTCTAAAAAATTATAACA-TGAAAAAGACTTCAG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAAAA-CA-AA-ATTGAAAAATACCTCGG
49613304 CGTGTGACCCGAGGC
62 CGTGTG-CCCGAGGC
* * * *
49613319 TCAAGTCACATCTCGCATTATGAGTTGATTTTTTG-AAAATCATAAATTG-AAAATACCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49613382 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* *
49613395 TCAACTCACCTCTCGCATTATGAGTTGATTGTTGAAAAAA-ATTAAATTTAAAAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA--AAA-TTGAAAAATACCTCGGC
* ** *
49613459 ATGTGTTCGAGCC
63 GTGTGCCCGAGGC
* * * *
49613472 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAACATAGAAATTAAAAAATACCTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49613537 GTGCCCGAGGC
65 GTGCCCGAGGC
* * * * *
49613548 TCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAACGAAACT-AAAAATAACTCAGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAACAAAATTGAAAAATACCTCGGCGT
*
49613612 GTGACTCGAGGC
65 GTG-CCCGAGGC
* * * *** * * **
49613624 TCAACTTATCTCTCGCATTATGAGTAGATTTTTTTTTAAATCATAAATTG-AAAATAGCTTAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
*
49613688 TGCGCCCTGAGGC
64 TGTGCCC-GAGGC
* * * * * * *
49613701 TTAACTCACCTCTAGCATTATGAGTTGATTTTT-CACAAACAAAAATTTAAAAATACTTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCGT
**
49613765 GTGTTCGAGGC
65 GTGCCCGAGGC
* * *
49613776 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAATAGAAATTGAAAAATACCACGCCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAACA-AAATTGAAAAATACCTCGGCG
*
49613841 TGTTCCCGAGGC
64 TGTGCCCGAGGC
* * * * * * *
49613853 CCAACTCAACTCACGCATTATGAGTTGACTTTTGAAAAAATAGAAACTG-AAAATACCTCGGTGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49613917 GTGATCCGAGGC
65 GTG-CCCGAGGC
* *** *
49613929 CCAACTCA-CTCCTCTTTTTATGAGTTGATTTTTTTCG-AAAAACATAAATTGAAAAATATCTCG
1 TCAACTCACCT-CTCGCATTATGAGTTGA--TTTTT-GAAAAAACA-AAATTGAAAAATACCTCG
* * *
49613992 GCATATGACCCGAAGC
61 GCGTGTG-CCCGAGGC
* * * * * *
49614008 TCGACTCACCGCTCGCATTATGAGTTGATTTTTTG-AAAATCATAAATTG-AAAATATCTCAGCA
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
** * *
49614071 TACGACCTGAGCC
64 TGTG-CCCGAGGC
* * * *
49614084 TCAACTCACCTCTCGCATTAAGAATTGATTTTTG-AAAAACAGATAATTAAAAAATACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-A-AATTGAAAAATACCTCGGCG
** **
49614148 TGTGTTCGACAC
64 TGTGCCCGAGGC
* *
49614160 TCAACTCACCTCTCGCATTATGAGTTCATTTTTGACAAAACAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49614224 GTGACCCAAGGC
65 GTG-CCCGAGGC
* * * ** *
49614236 TCAACTCACCTCTCACATTATGAGTTGATTTTTTTG-AAAAACATAACTTGAAAAATACTTTAGT
1 TCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
*
49614300 GTGTGGCCTGAGGC
63 GTGT-GCCCGAGGC
* * * * * * * * *
49614314 TCAACTCACATATCACATTATAAGTTCATTTTTTG-AAAATCGTAAATTG-AAAATACCACAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCG
* *
49614377 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
** * * *
49614390 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA-AGAAATTGAATGCATACTTCAGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAA-AAATACCTCGGCG
** *
49614454 TGTGTTCTAGGC
64 TGTGCCCGAGGC
* * ** * *
49614466 TCAACTGACCTCACGCATTATGAGTTGATTTTAAAAAAAAATAGAAATTGAAAAATACCACGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTT-TGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49614531 TGTGCCCAATGC
64 TGTGCCCGAGGC
* * *
49614543 TCAACTCACCTCTCGCATTATGAGTTGACTTTTGAAAAAATAGAAATT-AAAAATACCTCGGCTT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49614607 GTGACCCGAGAC
65 GTG-CCCGAGGC
* * * * * * *
49614619 TCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATCATAAAGTG-AAAATACCTCAGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* *
49614683 GCGACCCGAGGT
65 GTG-CCCGAGGC
* * * *
49614695 TCAACTCACCTCTCACATTATGAGTTGATTTTTG-AAAAACAAAAATTTAAAAAATACCTCGACA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAA-TTGAAAAATACCTCGGCG
****
49614759 TGTGTTTTAGGC
64 TGTGCCCGAGGC
* * *
49614771 TCAACTCATCTCTCGCATTATGAGTTGATTTTTG-AAAAACTAGAAATTGAAAAATACCCCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-A-AAATTGAAAAATACCTCGGCG
49614835 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * * *
49614847 TCAACTCACATCTTGCATTATGAGTTGACTTTAGAAAAAACAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49614911 GTGACCCGAGGC
65 GTG-CCCGAGGC
* * * * * * * *
49614923 TCAACTCACCTCTCGCATTATGAATTGGTTTTTGAAAAATATATATTTAAAAAATACCACGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACCTCGGCGT
** *
49614988 GTGTTCGACGC
65 GTGCCCGAGGC
* ** * * * * *
49614999 TCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAACATCACCTCT-CAAAAGA-GTTGAC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA--AAAT-TGAAAAATACCTCGGC
* ***** *
49615062 -TTTTTAAAAAGC
63 GTGTGCCCGAGGC
** * * ** * * * *** **** * ** * ** *
49615074 AAAAATTGAAAAT-AC-C--TAGGCAGGTG-TTCGCGGCTCAACTCACCTCTCGCATTATGA-TT
1 -TCAACT-CACCTCTCGCATTATG-AGTTGATTTTTGAAAAAAC-AAAAT-T-GAAAAAT-ACCT
* *** * ** * ***
49615133 TGATTTTTAAAATAACAGAAAT
59 CG--GCGT---GTGCCCGAGGC
* * * * * *** ** * *** *** * ** * * * **
49615155 TGAAAAAT-ACCT-TGGC-GTGTG-CCCGA-TGCTCAACTCAC-CTCTCGCATTATTA-GTTGAT
1 T--CAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTG-AAAAATACCTCGGC
* * *** **
49615213 TTTTGAAAAAGTAGAAAT
63 GTGTG--CCCG-AG--GC
* * * * * ** *** * ** ** * ** * * *
49615231 TGAAAAT-ACCTC-GGC-GTGTGACCTGA-GGCT--CAACTC-AGCTCTCGCATTATGA-GTTGA
1 T-CAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAAT-T-GAAAAAT-ACCTCGG
* * **
49615288 CTTTTTG---GA-AA
62 C-GTGTGCCCGAGGC
** * * * ***** * * ** * **
49615299 TC-A-T-AAAT-T-GAAAATACATCAGTGTGCGGCCTGAGCTCAAATC-ACCTCTCGCATGATGA
1 TCAACTCACCTCTCG--CAT-TATGAGT-TGATTTTTGA---AAAAACAAAAT-T-GAAAAAT-A
* * *** * *** ***
49615358 -GTAGATTTTTGAAAAATAGAAAT
56 CCTCGGCGTGTG----CCCGAGGC
* * * * * * * * ** **** ***
49615381 TTATAGAT-ACCT-TGGCACGTGT-TCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
1 TCA-A-CTCACCTCTCGCA--T-TAT-GA-G-T----TGA-TTTTTG-A-AAAAACAAAATTGAA
* * ** * *** **** **
49615443 GAAAAAATAGAAAT-TGAAAAATAC
51 AAATACCTCGGCGTGTGCCCGAGGC
** * * * *** * ** * ** * * * ** ** * *
49615467 -C-ACGGA-GTGTGCCCGAGGCTCAACTCACCTCTCACATTA-TGAGTTGACTTTTGAAAA-A-A
1 TCAACTCACCTCT-CGC-ATTATGAGTTGATTTTTGAAAAAACAAAATTGA------AAAATACC
* *** *** **
49615526 TAGAAAT-TG-AAAATATC
58 TCGGCGTGTGCCCGA-GGC
* * ** * ** ** **** *****
49615543 TCAGCGTGTGACC-CGAGGC-TTAACTCACCTCTTTCATTATGAGTTGATTTTTTTGAAAGACAT
1 TCAAC---TCACCTC-TCGCATT-A-TGAGTTGATT--TT-TGAAAAAACAAAATTGAAA-A-AT
** * ***** * *
49615606 AAATTGAAAAATACCTCGGCGTGTGAC
55 ACCTCGGCGTGT-GC-C--CGAG-G-C
* * * * * * ** ****** * * * **
49615633 CCGAGGCTCAACTCACG-ACTCA-CA-TT-ATGAGTTGATTTGTTGAAAATCGTAAATTGAAAAT
1 TC-A-ACTCACCTCTCGCA-TTATGAGTTGAT-TTTTGA-AAAAACAAAATTGAAAAAT--ACCT
** ** *
49615694 -ATC-TCAG--CGTACGAC
59 CGGCGTGTGCCCG-A-GGC
* * * *
49615709 CCGAGGCTCAACTCAGCTCTTGCATTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAATTAC
1 TC-A-ACTC-A--C--CTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAA-TAC
* * ***
49615773 CTTGGCATGTGTTTGAGGC
57 CTCGGCGTGTGCCCGAGGC
* * *
49615792 TCAACTCACCTCTCGCATTATGAGTTGATTTTTTG-AAAATCATAAATTG-AAAATACCTCAGTG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49615855 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* * * * * * * * ** * **
49615868 TCAACTCAGCTCTAGCATGATGGGTTGATTTTTGACAAATAGAAATTTAAAAAATAGATTGGCAC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGA-AAAAACAAAATTGAAAAATACCTCGGCGT
**
49615933 GTGTTCGAGGC
65 GTGCCCGAGGC
* * * *
49615944 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAACAATAGAAATTGAAAAATACCACGGTGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* *
49616009 GTGCTCAAGGC
65 GTGCCCGAGGC
* ** * *
49616020 TCGACTCACCTCTAACATTTTGAGTTGACTTTTGAAAAAACAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49616084 GTGACCCAAGGC
65 GTG-CCCGAGGC
* * ** * *
49616096 TCAACTCACCTCTCACATTAAGAGTTGATTTTTTTTCAAAAACATAAATTGAAAAAGACATCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
*
49616161 GTGTGACCCGATGC
63 GTGTG-CCCGAGGC
* * * * * * * *
49616175 TCAACTCACGTCTCGCGTTACGATTTGGTTTGTTG-AAAATCATAAATTG-AAAATACCTCAGCT
1 TCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAAACA-AAATTGAAAAATACCTCGGCG
** *
49616238 TCCGACCTGAGGC
64 TGTG-CCCGAGGC
* * * * *
49616251 TCAACTCAACTTTCGCATTATGAGTTGATTTTTGAAAAAA-AGAATTTAAAAAATACCTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
**
49616315 GTGTTCGAGGC
65 GTGCCCGAGGC
* * * * *
49616326 TCAACTCACTTCTCGCATTATAAGTTGATTTTT-AATAGAATATAAATTGAAAAAATACATCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA-AAAACA-AAATTG-AAAAATACCTCGGC
49616390 GTGTGCCCGAGGC
63 GTGTGCCCGAGGC
* * * * *
49616403 TCAACTGACCTCTCGCATTATGAGGTGATTTTTGAAAACATAGAAATTGAAAAATACGTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49616468 GTGCCCGAAGC
65 GTGCCCGAGGC
* * * **
49616479 TCAACACACCTCTCGCATTATGAGTTGATGTTTGAAAACAACGAAATTG-AAAATACCTCAACGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AACAAAATTGAAAAATACCTCGGCGT
49616543 GTGACCCGAGGC
65 GTG-CCCGAGGC
* * * * * **
49616555 TGAACTCAGCTCTCGCATTATGAGTAGATCTTTT-TAAAATCATAAATTG-AAAATACCTCAACG
1 TCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
*
49616618 T-TCGACCTGAGGC
64 TGT-G-CCCGAGGC
* * * * * *
49616631 TCAACTCACCTCTAGCATTATGAGTTGATTTTTGAAAAAGAGAAATTTAAAAAATACCACGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACCTCGGCGT
** *
49616696 GTGTTCAAGGC
65 GTGCCCGAGGC
* * * * *
49616707 TCAACTTACCTCTCGCATTATGAGCTGATTTTTGAAAAAATAGAAATTGAAAAATACCACGTCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49616772 CTGCCCGAGGC
65 GTGCCCGAGGC
* * * * * * * *
49616783 TTAACTCACCTCTCACATTGTAAGTTGACTTTTGAAAAAATAGAAATTGAAAAATACCACGTCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49616848 CTGCCCGAGGC
65 GTGCCCGAGGC
* *
49616859 TTAACTCACCTCTCGCATTATGAGTTGATTTTTTTG-AAAAACATAAATTGAAAAATACCTTGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
**
49616923 GTGCCACCCGAGGC
63 GTG-TGCCCGAGGC
* * * * * * *
49616937 TCGACTCA-CTGCTCGTATTATGAGTTGATTTTTTGAACATAA-TAAATT-CAAAATATCTCAGC
1 TCAACTCACCT-CTCGCATTATGAGTTGA-TTTTTGAA-AAAACAAAATTGAAAAATACCTCGGC
* *
49616999 GTGCGACCCGATGC
63 GTGTG-CCCGAGGC
* * * * * *
49617013 TCAACTCACCTCTTGCATTAGGAATTGATTTTTGAAAAAA-AGATATTTAAAACATACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAA-ATACCTCGGCG
** *
49617077 TGTGTTCGACGC
64 TGTGCCCGAGGC
* * *
49617089 TCAACTCACCTCTCGCATTATGAGTTCATTTTTGGAAAACAA-GAAATT-AAAAATACCTTGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTT-GAAAA-AACAAAATTGAAAAATACCTCGGCG
* * *
49617152 TGAGACCCAAGAC
64 TGTG-CCCGAGGC
* * *
49617165 TCAACTCACCTCTCGCATTATGAGTTGATATTTG-AAAAACATAAATTTAAAAAATACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAA-TTGAAAAATACCTCGGCG
** *
49617229 TGTGTTCGAGCC
64 TGTGCCCGAGGC
* * *
49617241 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAACACTGAAATTAAAAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCGT
49617306 GTGCCCGAGGC
65 GTGCCCGAGGC
** ** * * * *
49617317 TCAACTCACCTCTCTTATTATGAGTTGA-TTTAAAAAAAACGAAACT-AAAAATAACTCAGCGTG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTGAAAAATACCTCGGCGTG
* *
49617380 TGACTCAAGGC
66 TG-CCCGAGGC
* * * * * *
49617391 TCAAC-CTAGCGCTCGCATTATGAGTTGATTTTTTG-AAAATCGTAAATTG-AAAATACCACAGC
1 TCAACTC-ACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGC
*
49617453 GTGCGACCCGAGGC
63 GTGTG-CCCGAGGC
* * * * *
49617467 ACAACTCACCTATCGCATTATGAGTTGATTTTTGAAAAAAAAAGAAATTTAAAACATACTTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAACA-AAATTGAAAA-ATACCTCGGC
* ** **
49617532 ATGTGTTCGATCC
63 GTGTGCCCGAGGC
* *
49617545 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAACTACCAT-GGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACC-TCGGCG
* *
49617609 TGTGCCTGATGC
64 TGTGCCCGAGGC
* *
49617621 TCAACTCACCTC-CGCATTATGAGTTGACTTTTG-AAAAACAGAAATT-AAAAATACCTCGGCTT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49617683 GTGACTCGAGGC
65 GTG-CCCGAGGC
* * * * * * **
49617695 TCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATCATAAATTG-ATAATACCTCAACGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* *
49617759 GCGACCCGAGGT
65 GTG-CCCGAGGC
* *
49617771 TCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAACATAAATTTAAAAAATACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAA-TTGAAAAATACCTCGGCG
** *
49617835 TGTGTTCGAGCC
64 TGTGCCCGAGGC
* * * * * *
49617847 TCAATTCACCTCTCGCATTATGGGTTGATTTTTGAAAACACTGAAATTAAAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCGT
49617912 GTGCCCGAGGC
65 GTGCCCGAGGC
* ** * * * * *
49617923 TCAACTCA-CTCTCGTATTATGAGTTGATTTTCAAAAAAACGAAACT-AAAAATAACTCAGCTTG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTGAAAAATACCTCGGCGTG
* *
49617986 TGACTCAAGGC
66 TG-CCCGAGGC
* * * ** * * * **
49617997 TCAACTTAGCTCTCGCATTATGAGTAGATTTTTTTAAAATCATAAACTG-AAAATAGCTTAGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
** *
49618061 ACGACCTGAGGC
65 GTG-CCCGAGGC
* * * * * *
49618073 TCAACTTACCTCTCGCATTATGAGTTGATTTTTCACAAACAA-AAATTTAAAAAATACTTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGA-AAA-AACAAAATTGAAAAATACCTCGGCG
**
49618137 TGTGTTCGAGGC
64 TGTGCCCGAGGC
** *
49618149 TCAACTCACCTCTCGCATTACAAGTTGATTTTTGAATAAACAAAAATTGAAAAAATACCTCGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTG-AAAAATACCTCGGCG
49618214 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * * * *
49618226 TCAACTGACCTCTCGCATTATGAGATGATTTTGGAAAACATAGAAATTGAAAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49618291 GTGCCCGAAGC
65 GTGCCCGAGGC
* * * ** *
49618302 TCAACACACCTCTCGCATTATGAGTTGATTTTTGAAGACAACGAAATTG-AAAATACCTTAGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAA-AAAACAAAATTGAAAAATACCTCGGCGT
*
49618366 GTGACCCGAGGG
65 GTG-CCCGAGGC
* * * * * *
49618378 TGAACTCAGCTCTCGCATTATGAGTAGATCTTTT-TAAAATCATAAATTG-AAAATACCTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49618441 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* * * * *
49618454 TTAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAATAGAAATTTAAAAAATACCTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACCTCGGCGT
**
49618519 GTGTTCGAGGC
65 GTGCCCGAGGC
* * *
49618530 TCAACTCACATCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
** *
49618595 GTGTTCGATGC
65 GTGCCCGAGGC
* *
49618606 TCAACTCACCTCTCGCATTATGAGTTCATTTTTGAAAAAATAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49618670 GTGACCCAAGGC
65 GTG-CCCGAGGC
* * *
49618682 TCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTG-AAAAACATAACTTGAAAAATACTTCAG
1 TCAACTCACCTCTCGCATTATGAGTTGA---TTTTTGAAAAAACA-AAATTGAAAAATACCTCGG
* * *
49618746 TGTGTGGCCTGAGGG
62 CGTGT-GCCCGAGGC
* * * * * * * * * * *
49618761 TCAACTAACATATCACATTATAAGTTGATTTTTTG-AAAATCGTAAATCG-AAAATACCACAGAG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCG
*
49618824 TGCGACCCGAGGC
64 TGTG-CCCGAGGC
* * * *
49618837 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA-AGAAATTTAAAACATACTTTGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAA-ATACCTCGGCG
** *
49618901 TGTGTTCGAGCC
64 TGTGCCCGAGGC
* *
49618913 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCACGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49618978 GTGCCCGATGC
65 GTGCCCGAGGC
* * * *
49618989 TCAACTCACCTCTCGCATTATGAGTTGACTATTGAAAAAATAGAAATT-AAAAATACCTCGGCTT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49619053 GTGACCCGAGGC
65 GTG-CCCGAGGC
* * * * * * *
49619065 TCAACTCACCTCTCGCATTATAAGTTCATTTTAGGAAAATCATAAATTG-AAAATACCTCAGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* * *
49619129 GCGACCCGATGT
65 GTG-CCCGAGGC
* * *
49619141 TCAACTCACCTCTCGCATTATGAGTTGATATTTG-AAAAACAAAAATTTAACAAATACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAA-AAATACCTCGGCG
****
49619205 TGTGTTTTAGGC
64 TGTGCCCGAGGC
* * * * * *
49619217 TGAACTCACATCTTGCATTATGAGTTTACTTTAGAAAAAACAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49619281 GTGACCTGAGGC
65 GTG-CCCGAGGC
* * * * * * * * *
49619293 TCAACTCACCTGTCGCATTATGAATTGCTTTTTGAAAAATATATATTTAAAAAATACCACGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACCTCGGCGT
** * *
49619358 GTGTTCAACGC
65 GTGCCCGAGGC
** * ** * * * * *
49619369 TCAACTCATTTCTCGTATTATGAGTTGATTTTTGAAAAAACATCACCTCT-CAAAAGA-GTTGAC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA--AAAT-TGAAAAATACCTCGGC
* * ** ** ***
49619432 TTTTTAAAAAACAAAAAT
63 -GTGT----GCCCGAGGC
* * * * * * * * ** **** * **
49619450 TGGAAAT-ACCTC-GGCAGGTGT-TCGCGGCTCAACTCACCTATCGCATTATGATTTGATTTTTA
1 T-CAACTCACCTCTCGCA--T-TAT-G-AG-T----TGA-TTTTTG-A--AAAAACAAAATTGAA
* * *** * *
49619512 AAATAAC-AGAAATTGAAAAATACCTTGGCGTGTGC
51 AAATACCTCG-GCGTG-----TGCC----CGAG-GC
* * * * * ** * *
49619547 CCGATGCTCAACTCAC-C-TCT-CGCA-TT-ATTAGTTT-ATTTTAAAAAAAATAGAAATTGAAA
1 TC-A-ACTCACCTCTCGCAT-TATG-AGTTGATT--TTTGA--AAAAACAAAATTG--A---AAA
*
49619606 ATACCTCGGCGTGTGACGCGAGTG-
53 ATACCTCGGCGTGTG-CCCGAG-GC
* * * * * * * * *
49619630 TCAATTCAGCTCTCGCATTATCAATTGAGTTTTTG-GAAATCATAAATTG-AAAGTACCTCAGTG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
** **
49619693 TACGACGTGAGGC
64 TGTG-CCCGAGGC
* * * * * **
49619706 TCAACTCACCTCTCGCCTGATGAGTTGATTTTTGAAAAATA-AAAATTTATAAATACCTTGGCAC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAATACCTCGGCGT
* **
49619770 ATGTTCGAGGC
65 GTGCCCGAGGC
* * * * * *
49619781 TCAACTCACCTCTCGCATTAAGAGTTGATTTCTAAAAAAATAGAAATTGAAAAATACCAT-AGAG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACC-TCGGCG
49619845 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* ** *
49619857 TCAACTCACCTCTCACATTATGAGTTGACATTTGAAAAAACAAAAATTG-AAAATACCTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAATACCTCGGCGT
49619921 GTGACCCGAGG-
65 GTG-CCCGAGGC
* **
49619932 TCAACTCACTTCTCGCATTATGAGTTGATTTTTTTG-AACGACATAAATTGAAAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
49619996 GTGTGACCCGAGGC
63 GTGTG-CCCGAGGC
* * * * **
49620010 TCAACTCACGTCTCGAATTATGAGTTGATTTATTG-AAAATCGTAAATTG-AAAATACCTCAACG
1 TCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAAAC-AAAATTGAAAAATACCTCGGCG
* *
49620073 TGCGACCCGAGGT
64 TGTG-CCCGAGGC
* * *
49620086 TCAACTCAGCTCTCGCATTATGAGTTGATTTTTG-AAAAACAAAAATTTAAAAATTACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAC-AAAATTGAAAAA-TACCTCGGCG
***
49620150 TGTGTTTGAGGC
64 TGTGCCCGAGGC
* * * * *
49620162 TCAACTCACCTTTCGCATTATAAGTTGATTTTTGAAAAAAGAGAAATTGAAAAAACACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTG-AAAAATACCTCGGCG
49620227 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * * * * *
49620239 TCAACTCACCTCTCGTATTATTAGTTGATTTTTTG-AAAATCATAAATTG-AAGATACCTCAGTG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49620302 TGCGACCTGAGGC
64 TGTG-CCCGAGGC
* * * * * * * * **
49620315 TCAACTCAGCTCTCGCATGATGAGTTGATTTTTGAAAACTAGAAATTTAAAAAATAGCTTGGCAC
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AACAAAATTGAAAAATACCTCGGCGT
**
49620380 GTGTTCGAGGC
65 GTGCCCGAGGC
** * * * * *
49620391 TCAACTCATGTCTCGCATTATGAGTTGATTTTTTAAAAAATAAAAATTG-AAAATAGCACGGAGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA-CAAAATTGAAAAATACCTCGGCGT
*
49620455 GTGACCGAGGC
65 GTGCCCGAGGC
* * * * *
49620466 TCAACTCACCTATCGCATTATGAGTTG-TATTTTGAAAAAATAGAAATAGAAAAAAACCTCGACG
1 TCAACTCACCTCTCGCATTATGAGTTGAT-TTTTGAAAAAACA-AAATTGAAAAATACCTCGGCG
49620530 TGTGACCCGAGGC
64 TGTG-CCCGAGGC
49620543 TCAACTCACCTCTCGCATTATGAGTTGACTTTTTTG-AAAAACATAAATTGAAAAATACCTCGGC
1 TCAACTCACCTCTCGCATTATGAGTTGA--TTTTTGAAAAAACA-AAATTGAAAAATACCTCGGC
*
49620607 GTGTGACCCGGGGC
63 GTGTG-CCCGAGGC
* * * * *
49620621 TCAACTCACGTCTTGCATTATGAGTTGATTTGTTG-AAAATCATAAATTG-AAAATAACTCAGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTT-TTGAAAAAACA-AAATTGAAAAATACCTCGGCG
* *
49620684 TGCGACCCGATGC
64 TGTG-CCCGAGGC
* ** * *
49620697 TCAACTCAGCAGTCGCATTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAATTACCTCGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAA-TACCTCGGCG
**
49620761 TGTGTTCGAGGC
64 TGTGCCCGAGGC
* * * * * *
49620773 TCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAAATAGAAACTGAAAAATTACCTCAGTG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAA-TACCTCGGCG
49620838 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * ** *
49620850 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTG-AAACTAATTCGACGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* *
49620914 GTGACCGAAGC
65 GTGCCCGAGGC
* * * * *
49620925 TCAACTCACCTCACGTATTTTGAGTT-ATTTTTTTTG-AAAATCATAAA-TGAAAAATACCTCAG
1 TCAACTCACCTCTCGCATTATGAGTTGA---TTTTTGAAAAAACA-AAATTGAAAAATACCTCGG
* * *
49620987 CGTGCGACTCAAGGC
62 CGTGTG-CCCGAGGC
** * * * * * * *
49621002 TTTACTCACCTCACGTATTATGAGTTGATTTTTGAAAAATA-GAAATTTAAAAAGTACATCTGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA-ACAAAATTGAAAAA-TACCTCGGCG
* ** *
49621066 TGGGTTCTAGGC
64 TGTGCCCGAGGC
* *
49621078 TCAACTCACCTCTCGCATTATTAGTTGATTTTTGAAAAAAAAGAAATTGAAAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49621143 GTGCCTGAGGC
65 GTGCCCGAGGC
* * *
49621154 TCAACTCACCTCTCGCTTTATGAGTTGACTTTTGAAAAAATAGAAATTG-AAAATACCTCGGCGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
49621218 GTGACCCGAGGC
65 GTG-CCCGAGGC
* * * *
49621230 TCAACTCACCTCTCGCATTATGAGTTGATTTTTCAAAAAATAGAAATTG-AAAATTCCTCGACGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49621294 GTGACCCGAGGG
65 GTG-CCCGAGGC
** * * * * *
49621306 TCAACTCACCTCTCGCATTATGAGTTGATTTTTTTAAAATCATAAATT-TAAAATTCCTCAGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49621370 TTGACCCGAGGC
65 GTG-CCCGAGGC
* * * * * * *
49621382 TCAAATCTCCTATTGCATTATGAGTTGATTTTTGTAAAACAAC-AATTTAAAAAATACCTCGACA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAA-AACAAAATTGAAAAATACCTCGGC-
* *
49621446 TGTGTTCACGA--C
63 -GTGTGCCCGAGGC
* * * *
49621458 TCAACTCACCTCTCGCATTATGATTTGATTTTT-AAAATAACAAAAATTGAAAAATACCTTGACA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA-AAC-AAAATTGAAAAATACCTCGGCG
*
49621522 TGTGCCCGATGC
64 TGTGCCCGAGGC
* * * *
49621534 TCAACTCACCTCTCGCATTAAGAGTTGATTTTTTGAAAATTA-TAAATTG-AAAATACCTC-GTG
1 TCAACTCACCTCTCGCATTATGAGTTGA-TTTTTGAAAA-AACAAAATTGAAAAATACCTCGGCG
* ***
49621596 TGCGAATTGAGGC
64 TGTG-CCCGAGGC
* * * * *
49621609 TCAACTCACCTCTTGCTTTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAAATACCTTGGCA
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAA-TTGAAAAATACCTCGGCG
**
49621673 TGTGTTCGAGGC
64 TGTGCCCGAGGC
* * *
49621685 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTAAAAAATAACAT-GGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAAT-ACCTCGGCG
49621749 TGTGCCCGAGGC
64 TGTGCCCGAGGC
* * * * *
49621761 TCAACTCACCTCTCGCATTATGAGTTGACTTTTGAAATAATAGAAATTG-AAAATACGTCGGTGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
* *
49621825 GTGACCTGGGGC
65 GTG-CCCGAGGC
* * * * *
49621837 TGAACTCACCTCTGGCATTATGAGTTGATTTTTGAAAAAATAGAAATTG-AAAATTCCTCGGCAT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49621901 GT-CTACGAGGC
65 GTGC-CCGAGGC
*
49621912 TCAACTCACCTCTCACATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAAATACCTCGGCG
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTG-AAAAATACCTCGGCG
*
49621977 TGTGCCCGAGGT
64 TGTGCCCGAGGC
* * * * * * * * *
49621989 TCAACTTACCTCTCACGTTATGAGTTGATATGTGAAAAAATAGAAACTG-AAAATAACTCGACGT
1 TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACA-AAATTGAAAAATACCTCGGCGT
*
49622053 GTGACCTGAGGC
65 GTG-CCCGAGGC
49622065 TCAA
1 TCAA
49622069 ATCATTAATT
Statistics
Matches: 13737, Mismatches: 2931, Indels: 1666
0.75 0.16 0.09
Matches are distributed among these distances:
64 1 0.00
65 3 0.00
66 1 0.00
67 1 0.00
68 51 0.00
69 69 0.01
70 6 0.00
71 37 0.00
72 88 0.01
73 247 0.02
74 579 0.04
75 1808 0.13
76 6807 0.50
77 2536 0.18
78 907 0.07
79 239 0.02
80 27 0.00
81 50 0.00
82 41 0.00
83 36 0.00
84 28 0.00
85 12 0.00
86 11 0.00
87 20 0.00
88 5 0.00
89 11 0.00
90 11 0.00
91 17 0.00
92 18 0.00
93 15 0.00
94 9 0.00
95 9 0.00
96 11 0.00
97 3 0.00
98 1 0.00
99 6 0.00
100 2 0.00
104 2 0.00
105 12 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (75 bp):
TCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAAAATTGAAAAATACCTCGGCGTG
TGCCCGAGGC
Found at i:49615188 original size:185 final size:186
Alignment explanation
Indices: 49614868--49615222 Score: 464
Period size: 185 Copynumber: 1.9 Consensus size: 186
49614858 CTTGCATTAT
* *
49614868 GAGTTGACTTTAGAAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACC
1 GAGTTGACTTTAGAAAAAACAAAAATTGAAAATACCTAGGCGTGTGACCCGAGGCTCAACTCACC
* * * * * **
49614933 TCTCGCATTATGAATTGGTTTTTGAAAAATATATATTTAAAAAATACCACGGCATGTGTTCGACG
66 TCTCGCATTATGAATTGATTTTTAAAAAACAGATAATTAAAAAATACCACGGCATGTGCCCGACG
*
49614998 CTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAACATCACCTCTCAAAA
131 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACATCACCTCTCAAAA
** * ** *
49615054 GAGTTGACTTTTTAAAAAGCAAAAATTGAAAATACCTAGGCAG-GTG-TTCGCGGCTCAACTCAC
1 GAGTTGACTTTAGAAAAAACAAAAATTGAAAATACCTAGGC-GTGTGACCCGAGGCTCAACTCAC
* * ** *
49615117 CTCTCGCATTATGATTTGATTTTTAAAATAACAGA-AATTGAAAAATACCTTGGCGTGTGCCCGA
65 CTCTCGCATTATGAATTGATTTTTAAAA-AACAGATAATTAAAAAATACCACGGCATGTGCCCGA
* *
49615181 TGCTCAACTCACCTCTCGCATTATTAGTTGATTTTTGAAAAA
129 CGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAA
49615223 GTAGAAATTG
Statistics
Matches: 144, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
185 100 0.69
186 43 0.30
187 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (186 bp):
GAGTTGACTTTAGAAAAAACAAAAATTGAAAATACCTAGGCGTGTGACCCGAGGCTCAACTCACC
TCTCGCATTATGAATTGATTTTTAAAAAACAGATAATTAAAAAATACCACGGCATGTGCCCGACG
CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACATCACCTCTCAAAA
Found at i:49622203 original size:76 final size:74
Alignment explanation
Indices: 49622075--49622772 Score: 786
Period size: 76 Copynumber: 9.1 Consensus size: 74
49622065 TCAAATCATT
* *** * * *
49622075 AATTAAAAATACCTCAGCGTCCAACCCAAGGCTCAACTCACCTATCGTATTATGAGTTGATTTTT
1 AATTAAAAATACCTCGGCGT-GTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
*
49622140 GAAAAACAGA
65 GAAAAATAGA
* ** * *
49622150 AATTTAAAAAATACCTCGGCTTGTGTTCTAGGCTCAACTCACCTCTCGCATTATTAGTTGATTTT
1 AA-TT-AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTT
* *
49622215 TGAAAAAACAAA
64 TG-AAAAATAGA
* *
49622227 AATTGAAAAATACATTGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
1 AATT-AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
49622292 GAAAAAATAGA
65 G-AAAAATAGA
* * * *
49622303 AATTGAAAATAACTCGGCGTGTGACCGGAGGGTCGAA-TCACCTCTCGCATTATGAGTTGATTTT
1 AATTAAAAATACCTCGGCGTGTG-CCCGAGGCTC-AACTCACCTCTCGCATTATGAGTTGA-TTT
*
49622367 TTAGAAAAACAGA
63 TT-GAAAAATAGA
* * * **
49622380 AATTGAAAATACCTCGGCGTGTGACCCGAGACACAACTCACCTCTCTAATTATGAGTTGATTTTT
1 AATTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
49622445 GAAAAAATAGA
65 G-AAAAATAGA
* * * * * *
49622456 AATTGAAAATTCCTCAGCATGTGACCCGAGTCTCAACTCACCTCTCGCATTATGAGTTGGTTTTT
1 AATTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
49622521 GAAAAATAGA
65 GAAAAATAGA
* * ** *
49622531 AATTTAAAAAATACCTTGGCATGTGTTCGAGGCTCAACTCACCTCTCGCATTATGATTTGATTTT
1 AA-TT-AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTT
49622596 TGAAAAAATAGA
64 TG-AAAAATAGA
* * * *
49622608 AATTAAAAAATACCACGGCATGTGCCCGAGGCTCAACTCACATCTCGCATTATGAGTTGAGTTTT
1 AATT-AAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
49622673 GAAAAATTAGA
65 GAAAAA-TAGA
* * *
49622684 AATTGAAAATACCTCGGCGTGTGACCCGAGGCTCATCTCACCTCTCGCATTATGAGTAGATTTTT
1 AATTAAAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
49622749 GAAAAAAATAGA
65 G--AAAAATAGA
49622761 AATTGAAAAATA
1 AATT-AAAAATA
49622773 ATTCTTGAAA
Statistics
Matches: 537, Mismatches: 69, Indels: 31
0.84 0.11 0.05
Matches are distributed among these distances:
75 50 0.09
76 352 0.66
77 123 0.23
78 12 0.02
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (74 bp):
AATTAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTG
AAAAATAGA
Found at i:49622260 original size:194 final size:195
Alignment explanation
Indices: 49621908--49622262 Score: 482
Period size: 194 Copynumber: 1.8 Consensus size: 195
49621898 CATGTCTACG
*
49621908 AGGCTCAACTCACCTCTCACATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAAATACCTC
1 AGGCTCAACTCACCTATCACATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAAATACCTC
* * * * *
49621973 GGCGTGTGCCCGAGGTTCAACTTACCTCTCACGTTATGAGTTGATATGTGAAAAAATAGAAACTG
66 GGCGTGTGCCCGAGGCTCAACTCACCTCTCACATTATGAGTTGATATGTGAAAAAACAAAAACTG
*
49622038 AAAATAACTCGACGTGTGACCTGAGGCTCAAATCATTAATTAAAAATACCTCAGCGTCCAACCCA
131 AAAATAACTCGACGTGTGACCCGAGGCTCAAATCATTAATTAAAAATACCTCAGCGTCCAACCCA
** *
49622103 AGGCTCAACTCACCTATCGTATTATGAGTTGATTTTTG-AAAAACAGAAATTTAAAAAATACCTC
1 AGGCTCAACTCACCTATCACATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAAATACCTC
* ** * * * * * *
49622167 GGCTTGTGTTCTAGGCTCAACTCACCTCTCGCATTATTAGTTGATTTTTGAAAAAACAAAAATTG
66 GGCGTGTGCCCGAGGCTCAACTCACCTCTCACATTATGAGTTGATATGTGAAAAAACAAAAACTG
* *
49622232 AAAA-ATACATTGGCGTGTG-CCCGAGGCTCAA
131 AAAATA-AC-TCGACGTGTGACCCGAGGCTCAA
49622263 CTCACCTCTC
Statistics
Matches: 137, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
193 1 0.01
194 93 0.68
195 43 0.31
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (195 bp):
AGGCTCAACTCACCTATCACATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAAATACCTC
GGCGTGTGCCCGAGGCTCAACTCACCTCTCACATTATGAGTTGATATGTGAAAAAACAAAAACTG
AAAATAACTCGACGTGTGACCCGAGGCTCAAATCATTAATTAAAAATACCTCAGCGTCCAACCCA
Found at i:49631341 original size:28 final size:28
Alignment explanation
Indices: 49631299--49631360 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
49631289 TTTTCTACCG
* *
49631299 GGCTGCCTGCATTGGGCTTGCGTTGCTA
1 GGCTGCCTGCATTGGGCCTGCGCTGCTA
* *
49631327 GGCTGCCTGCGTTGGGCCTGCGCTGCTG
1 GGCTGCCTGCATTGGGCCTGCGCTGCTA
49631355 GGCTGC
1 GGCTGC
49631361 ACAAAGTGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.03, C:0.29, G:0.40, T:0.27
Consensus pattern (28 bp):
GGCTGCCTGCATTGGGCCTGCGCTGCTA
Found at i:49631993 original size:30 final size:31
Alignment explanation
Indices: 49631957--49632143 Score: 154
Period size: 31 Copynumber: 6.2 Consensus size: 31
49631947 TGGGCTAAAG
* *
49631957 TGTAA-TTTATAGAAAGTTAATGGGTCAAAA
1 TGTAATTTTTTAGAAAGTTAAGGGGTCAAAA
*
49631987 TGTAATTTTTTA-AAATTTTAAGGGGTCAAAA
1 TGTAATTTTTTAGAAA-GTTAAGGGGTCAAAA
* ** *
49632018 TATAATTTTTTTTAAAGTTAAAGGGTCAAAA
1 TGTAATTTTTTAGAAAGTTAAGGGGTCAAAA
* *
49632049 TGTAA-TTTTTGGAAAGTTAAGGGGTCAAAT
1 TGTAATTTTTTAGAAAGTTAAGGGGTCAAAA
* * * *
49632079 TATAGTTTTTTA-AAAATTAAGAGGTC-AAA
1 TGTAATTTTTTAGAAAGTTAAGGGGTCAAAA
* * ** *
49632108 TATAA--TTTTAAAAAGTTGTGGAGTCAAAA
1 TGTAATTTTTTAGAAAGTTAAGGGGTCAAAA
49632137 TGTAATT
1 TGTAATT
49632144 AAAAAAATAA
Statistics
Matches: 124, Mismatches: 25, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
27 5 0.04
28 9 0.07
29 13 0.10
30 44 0.35
31 50 0.40
32 3 0.02
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.39
Consensus pattern (31 bp):
TGTAATTTTTTAGAAAGTTAAGGGGTCAAAA
Found at i:49632016 original size:31 final size:30
Alignment explanation
Indices: 49631969--49632143 Score: 165
Period size: 30 Copynumber: 5.8 Consensus size: 30
49631959 TAATTTATAG
* *
49631969 AAAGTTAATGGGTCAAAATGTAATTTTTTA
1 AAAGTTAAGGGGTCAAAATATAATTTTTTA
* *
49631999 AAATTTTAAGGGGTCAAAATATAATTTTTTTT
1 AAA-GTTAAGGGGTCAAAATATAA-TTTTTTA
* * **
49632031 AAAGTTAAAGGGTCAAAATGTAATTTTTGG
1 AAAGTTAAGGGGTCAAAATATAATTTTTTA
* *
49632061 AAAGTTAAGGGGTCAAATTATAGTTTTTTA
1 AAAGTTAAGGGGTCAAAATATAATTTTTTA
* * *
49632091 AAAATTAAGAGGTC-AAATATAA-TTTTAA
1 AAAGTTAAGGGGTCAAAATATAATTTTTTA
** * *
49632119 AAAGTTGTGGAGTCAAAATGTAATT
1 AAAGTTAAGGGGTCAAAATATAATT
49632144 AAAAAAATAA
Statistics
Matches: 115, Mismatches: 26, Indels: 8
0.77 0.17 0.05
Matches are distributed among these distances:
28 14 0.12
29 13 0.11
30 45 0.39
31 34 0.30
32 9 0.08
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (30 bp):
AAAGTTAAGGGGTCAAAATATAATTTTTTA
Found at i:49632044 original size:62 final size:61
Alignment explanation
Indices: 49631969--49632089 Score: 179
Period size: 62 Copynumber: 2.0 Consensus size: 61
49631959 TAATTTATAG
* * *
49631969 AAAGTTAATGGGTCAAAATGTAATTTTTTAAAATTTTAAGGGGTCAAAATATAATTTTTTTT
1 AAAGTTAAAGGGTCAAAATGTAATTTTTGAAAA-GTTAAGGGGTCAAAATATAATTTTTTTT
* * *
49632031 AAAGTTAAAGGGTCAAAATGTAATTTTTGGAAAGTTAAGGGGTCAAATTATAGTTTTTT
1 AAAGTTAAAGGGTCAAAATGTAATTTTTGAAAAGTTAAGGGGTCAAAATATAATTTTTT
49632090 AAAAATTAAG
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
61 23 0.43
62 30 0.57
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.40
Consensus pattern (61 bp):
AAAGTTAAAGGGTCAAAATGTAATTTTTGAAAAGTTAAGGGGTCAAAATATAATTTTTTTT
Done.