Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 169 of 189
Found at i:50254894 original size:16 final size:16
Alignment explanation
Indices: 50254828--50254899 Score: 58
Period size: 16 Copynumber: 4.4 Consensus size: 16
50254818 TTATTTACAC
* *
50254828 ATGTAAGTTGTGTATT
1 ATGTAAGTTATGTGTT
*
50254844 ATGTAAGTTATGCAAGTT
1 ATGTAAGTTATG--TGTT
*
50254862 ATGT-A-TTAAGTAGGTT
1 ATGTAAGTTATGT--GTT
50254878 ATGTAAGTTATGTGTT
1 ATGTAAGTTATGTGTT
50254894 ATGTAA
1 ATGTAA
50254900 ATGAATATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
16 31 0.70
17 2 0.05
18 11 0.25
ACGTcount: A:0.31, C:0.01, G:0.24, T:0.44
Consensus pattern (16 bp):
ATGTAAGTTATGTGTT
Found at i:50255419 original size:212 final size:212
Alignment explanation
Indices: 50254896--50255673 Score: 1421
Period size: 212 Copynumber: 3.7 Consensus size: 212
50254886 TATGTGTTAT
*
50254896 GTAAATGAATATATGTATAATATTAAAAATATAGTAATACTTATTTAAGTTATCAATTTATTATT
1 GTAAATGAATATATGTATAATATTAAAAATATAGTAATACTTATTTAAGTTGTCAATTTATTATT
* *
50254961 AATAAAATTTAAATATAGCTTACATATGCAATCTTTGCTTTTAAACTAATCTTCCACTTAATTAT
66 AATAAAATTTAAATATAGCTTACATAAGCAATCTTTGCTTTTAAACTAATCTTCCACTGAATTAT
*
50255026 TCATGGAGAGGTATATGTGTACAAAATTGACAACAAAATATGTTTAAATATTATTAATAAAATCT
131 TCGTGGAGAGGTATATGTGTACAAAATTGACAACAAAATATGTTTAAATATTATTAATAAAAT-T
* *
50255091 GAAATATAGCTTACATGC
195 TAAATATAGCTTACATAC
*
50255109 GTAAATAAATATATGTATAATATTAAAAATATAGTAATACTTATTTAAGTTGTCAATTTATTATT
1 GTAAATGAATATATGTATAATATTAAAAATATAGTAATACTTATTTAAGTTGTCAATTTATTATT
50255174 AATAAAATTTAAATATAGCTTACATAAGCAATCTTTGCTTTTAAACTAATCTTCCACTGAATTAT
66 AATAAAATTTAAATATAGCTTACATAAGCAATCTTTGCTTTTAAACTAATCTTCCACTGAATTAT
50255239 TCGTGGAGAGGTATATGTGTACAAAATTGACAACAAAATATGTTTAAATATTATTAATAAAATTT
131 TCGTGGAGAGGTATATGTGTACAAAATTGACAACAAAATATGTTTAAATATTATTAATAAAATTT
* *
50255304 AAATATAGTTTACATAT
196 AAATATAGCTTACATAC
*
50255321 GTAAATGAATATATGTATAATATTAAAAATATAGTAATACTTATTTAAGTTGTCAACTTATTATT
1 GTAAATGAATATATGTATAATATTAAAAATATAGTAATACTTATTTAAGTTGTCAATTTATTATT
50255386 AATAAAATTTAAATATAGCTTACATAAGCAATCTTTGCTTTTAAACTAATCTTCCACTGAATTAT
66 AATAAAATTTAAATATAGCTTACATAAGCAATCTTTGCTTTTAAACTAATCTTCCACTGAATTAT
50255451 TCGTGGAGAGGTATATGTGTACAAAATTGACAACAAAATATGTTTAAATATTATTAATAAAATTT
131 TCGTGGAGAGGTATATGTGTACAAAATTGACAACAAAATATGTTTAAATATTATTAATAAAATTT
50255516 AAATATAGCTTACATAC
196 AAATATAGCTTACATAC
50255533 GTAAATGAATATATGTATAATATTAAAAATATAGTAATACTTATTTAAGTTGTCAATTTATTATT
1 GTAAATGAATATATGTATAATATTAAAAATATAGTAATACTTATTTAAGTTGTCAATTTATTATT
* * *
50255598 AATAAAATTTAAATATAGCTTACATAAGCAATCTTTGCTTTTAAACTTACCGGTCCACTGAATTA
66 AATAAAATTTAAATATAGCTTACATAAGCAATCTTTGCTTTTAAACTAATC-TTCCACTGAATTA
50255663 TTCGTGGAGAG
130 TTCGTGGAGAG
50255674 TGAATATACA
Statistics
Matches: 547, Mismatches: 17, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
212 336 0.61
213 211 0.39
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.39
Consensus pattern (212 bp):
GTAAATGAATATATGTATAATATTAAAAATATAGTAATACTTATTTAAGTTGTCAATTTATTATT
AATAAAATTTAAATATAGCTTACATAAGCAATCTTTGCTTTTAAACTAATCTTCCACTGAATTAT
TCGTGGAGAGGTATATGTGTACAAAATTGACAACAAAATATGTTTAAATATTATTAATAAAATTT
AAATATAGCTTACATAC
Found at i:50259606 original size:36 final size:34
Alignment explanation
Indices: 50259519--50259606 Score: 88
Period size: 36 Copynumber: 2.5 Consensus size: 34
50259509 ATATAGGCAT
* * *
50259519 ATATATTATATA-TTATATATATAATGACCATAG
1 ATATATTATATATTTATATATATAAAGACCACAC
* *
50259552 ATGTATGTATTTATTTTATATATATAACAAGACCACAC
1 ATATAT-TATATA-TTTATATATAT-A-AAGACCACAC
50259590 ATATATTATATATTTAT
1 ATATATTATATATTTAT
50259607 CGAGATGCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
33 5 0.12
34 5 0.12
36 15 0.35
37 6 0.14
38 12 0.28
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (34 bp):
ATATATTATATATTTATATATATAAAGACCACAC
Found at i:50263765 original size:9 final size:9
Alignment explanation
Indices: 50263747--50263822 Score: 107
Period size: 9 Copynumber: 8.4 Consensus size: 9
50263737 TTTGGTTAAA
*
50263747 AATTACCCG
1 AATTAACCG
50263756 AATTAACCG
1 AATTAACCG
*
50263765 AATTACCCG
1 AATTAACCG
50263774 AATTAACCG
1 AATTAACCG
* *
50263783 GATTACCCG
1 AATTAACCG
50263792 AATTAACCG
1 AATTAACCG
*
50263801 AATTACCCG
1 AATTAACCG
50263810 AATTAACCG
1 AATTAACCG
50263819 AATT
1 AATT
50263823 GAATCACTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 58 1.00
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:50263770 original size:18 final size:18
Alignment explanation
Indices: 50263747--50263822 Score: 143
Period size: 18 Copynumber: 4.2 Consensus size: 18
50263737 TTTGGTTAAA
50263747 AATTACCCGAATTAACCG
1 AATTACCCGAATTAACCG
50263765 AATTACCCGAATTAACCG
1 AATTACCCGAATTAACCG
*
50263783 GATTACCCGAATTAACCG
1 AATTACCCGAATTAACCG
50263801 AATTACCCGAATTAACCG
1 AATTACCCGAATTAACCG
50263819 AATT
1 AATT
50263823 GAATCACTAC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 56 1.00
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.24
Consensus pattern (18 bp):
AATTACCCGAATTAACCG
Found at i:50270420 original size:15 final size:15
Alignment explanation
Indices: 50270402--50270431 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50270392 TCTATTTTTT
50270402 TTATATCAATTTGAG
1 TTATATCAATTTGAG
*
50270417 TTATATCGATTTGAG
1 TTATATCAATTTGAG
50270432 CTTGAAAGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.47
Consensus pattern (15 bp):
TTATATCAATTTGAG
Found at i:50274342 original size:9 final size:9
Alignment explanation
Indices: 50274325--50274362 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
50274315 TAAATTTTCG
50274325 AATTCGAAT
1 AATTCGAAT
*
50274334 AACTCGAAT
1 AATTCGAAT
50274343 AATTCGAAT
1 AATTCGAAT
50274352 AATTCGAAT
1 AATTCGAAT
50274361 AA
1 AA
50274363 AAACTATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (9 bp):
AATTCGAAT
Found at i:50274407 original size:29 final size:29
Alignment explanation
Indices: 50274367--50274425 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
50274357 GAATAAAAAC
*
50274367 TATATTTTTTATTTTTAAAATATACTACA
1 TATATTTTTTATTTTTAAAATACACTACA
50274396 TATATTTTTTATTTTTAAAATACACTACA
1 TATATTTTTTATTTTTAAAATACACTACA
50274425 T
1 T
50274426 TTAAAACAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.54
Consensus pattern (29 bp):
TATATTTTTTATTTTTAAAATACACTACA
Found at i:50274921 original size:114 final size:114
Alignment explanation
Indices: 50274718--50275036 Score: 478
Period size: 114 Copynumber: 2.8 Consensus size: 114
50274708 CCGCTAACAA
* *
50274718 TAAGCATTAGCGGCGTTTTTGAGAAAGCGCCACAAAAAACCTAATCCAAAACGACGCAGTTTTGT
1 TAAGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTTGT
*
50274783 AAGCTTTCGGGGATTTAGCAGCGTTTTTAAGAAAGCACCGCTAATGCTC
66 GAGCTTTCGGGGATTTAGCAGCGTTTTTAAGAAAGCACCGCTAATGCTC
*
50274832 TAAGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGATGCAGTTTTGT
1 TAAGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTTGT
* * *
50274897 GAGCTTTCGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTC
66 GAGCTTTCGGGGATTTAGCAGCGTTTTTAAGAAAGCACCGCTAATGCTC
* * * * ** *
50274946 -AGGGCTTTAGCGGCATTTTTGAGAAAGCGCCGCAAAAAACTTAAGCCAAAACGACGCTTTTTTT
1 TA-AGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTTG
* *
50275010 TGCGCTTTCGGGGATTTAGCAGTGTTT
65 TGAGCTTTCGGGGATTTAGCAGCGTTT
50275037 AATTGATTTA
Statistics
Matches: 186, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
113 1 0.01
114 185 0.99
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (114 bp):
TAAGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAATCCAAAACGACGCAGTTTTGT
GAGCTTTCGGGGATTTAGCAGCGTTTTTAAGAAAGCACCGCTAATGCTC
Found at i:50275426 original size:19 final size:19
Alignment explanation
Indices: 50275377--50275426 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
50275367 AAGGTTTTAG
*
50275377 TTAGGGAGTATTTATGGAT
1 TTAGGGAGTATATATGGAT
*
50275396 TTAAGGAGTATATATGGAT
1 TTAGGGAGTATATATGGAT
*
50275415 TTAGGGATTATA
1 TTAGGGAGTATA
50275427 GATTAATAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (19 bp):
TTAGGGAGTATATATGGAT
Found at i:50275489 original size:22 final size:22
Alignment explanation
Indices: 50275454--50275533 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
50275444 GTTTAATTGA
*
50275454 GGGTT-GGGATTTAAG-GCTTAG
1 GGGTTAGGGGTTTAAGAG-TTAG
50275475 GGGTTAGGGGTTTAAGAGTTAG
1 GGGTTAGGGGTTTAAGAGTTAG
**
50275497 ATGTTAGGGG-TTAAGAGTTAG
1 GGGTTAGGGGTTTAAGAGTTAG
*
50275518 GGATTTA-GGGTTTAAG
1 GG-GTTAGGGGTTTAAG
50275534 GTTTCAAGGG
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
21 19 0.39
22 29 0.59
23 1 0.02
ACGTcount: A:0.24, C:0.01, G:0.41, T:0.34
Consensus pattern (22 bp):
GGGTTAGGGGTTTAAGAGTTAG
Found at i:50275745 original size:14 final size:14
Alignment explanation
Indices: 50275726--50275752 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50275716 ATATATGGGT
50275726 TTAGGGATTATGGA
1 TTAGGGATTATGGA
50275740 TTAGGGATTATGG
1 TTAGGGATTATGG
50275753 TTTAATTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (14 bp):
TTAGGGATTATGGA
Found at i:50275828 original size:14 final size:14
Alignment explanation
Indices: 50275789--50275831 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
50275779 AGGTTTAGAC
50275789 GTTAAGAGTTTAGGG
1 GTTAAGAG-TTAGGG
*
50275804 GTT-AGATGTTAGTG
1 GTTAAGA-GTTAGGG
50275818 GTTAAGAGTTAGGG
1 GTTAAGAGTTAGGG
50275832 ATTTAGGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.26, C:0.00, G:0.40, T:0.35
Consensus pattern (14 bp):
GTTAAGAGTTAGGG
Found at i:50276317 original size:47 final size:47
Alignment explanation
Indices: 50276251--50276352 Score: 159
Period size: 47 Copynumber: 2.1 Consensus size: 47
50276241 GAAAATGAAA
* *
50276251 TAAAAACACTAAACTTTTTAATTTTATCTAATTTTTAAAAATATTACT
1 TAAAAA-ACTAAAATTTTTAATTTTATCTAATTTTTAAAAATATAACT
* *
50276299 TAAAAAATTAAAATTTTTAATTTTATCTAATTTTTATAAATATAACT
1 TAAAAAACTAAAATTTTTAATTTTATCTAATTTTTAAAAATATAACT
50276346 TAAAAAA
1 TAAAAAA
50276353 ACCTATGCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 44 0.88
48 6 0.12
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (47 bp):
TAAAAAACTAAAATTTTTAATTTTATCTAATTTTTAAAAATATAACT
Found at i:50280632 original size:15 final size:15
Alignment explanation
Indices: 50280612--50280641 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50280602 GAGTTGAAAG
50280612 TGAAGAAGAAGATGA
1 TGAAGAAGAAGATGA
*
50280627 TGAAGATGAAGATGA
1 TGAAGAAGAAGATGA
50280642 AGATAATCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (15 bp):
TGAAGAAGAAGATGA
Found at i:50281088 original size:43 final size:43
Alignment explanation
Indices: 50281006--50281207 Score: 201
Period size: 43 Copynumber: 4.7 Consensus size: 43
50280996 TCAAAGCATC
* * * * *
50281006 GCTAAAGGTCTTTGATCTATAGCGGTGTTTGTGGTAAAAGTGCT
1 GCTAAAGGTC-CTGAGCTATAGCGGCGTTTGTGGGAAAAGCGCT
* ** *
50281050 GCTAAAGGTCTTGAGCTATAGCGGCGTTTGTTAGAAAAGCGCC
1 GCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGCGCT
** ** * *
50281093 GCTAAAAATCCCAAGCTATAGTGGCGTTTATGGGAAAAGCGCT
1 GCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGCGCT
**
50281136 GCTAAAGGTCCTGATTTATAGCGGCGTTTGTGGGAAAAGCG-T
1 GCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGCGCT
*
50281178 CGCTAAAGGTCATGA-CTTATAGCGGCGTTT
1 -GCTAAAGGTCCTGAGC-TATAGCGGCGTTT
50281208 ATTTTTAAAA
Statistics
Matches: 129, Mismatches: 27, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
42 1 0.01
43 118 0.91
44 10 0.08
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
GCTAAAGGTCCTGAGCTATAGCGGCGTTTGTGGGAAAAGCGCT
Found at i:50281199 original size:86 final size:86
Alignment explanation
Indices: 50280981--50281209 Score: 230
Period size: 86 Copynumber: 2.7 Consensus size: 86
50280971 ATGGTGTTTT
* ** * * * * *
50280981 TAGCGGCGTTTGTAATCAAAGCATCGCTAAAGGTCTTTGA-TCTATAGCGGTGTTTGTGGTAAAA
1 TAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTC-ATGACT-TATAGCGGCGTTTATGGGAAAA
* *
50281045 GTGCTGCTAAAGGTCTTGAGCTA
64 GCGCTGCTAAAGGTCCTGAGCTA
* * ** * *
50281068 TAGCGGCGTTTGTTAGAAAAGCGCCGCTAAAAATCCCAAG-C-TATAGTGGCGTTTATGGGAAAA
1 TAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGT--CATGACTTATAGCGGCGTTTATGGGAAAA
**
50281131 GCGCTGCTAAAGGTCCTGATTTA
64 GCGCTGCTAAAGGTCCTGAGCTA
*
50281154 TAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGACTTATAGCGGCGTTTAT
1 TAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCATGACTTATAGCGGCGTTTAT
50281210 TTTTAAAAAC
Statistics
Matches: 113, Mismatches: 24, Indels: 11
0.76 0.16 0.07
Matches are distributed among these distances:
84 3 0.03
85 1 0.01
86 80 0.71
87 27 0.24
88 1 0.01
89 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (86 bp):
TAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCATGACTTATAGCGGCGTTTATGGGAAAAGC
GCTGCTAAAGGTCCTGAGCTA
Found at i:50285927 original size:13 final size:13
Alignment explanation
Indices: 50285909--50285936 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50285899 TCCAAACCTA
50285909 TACATACCAAATT
1 TACATACCAAATT
50285922 TACATACCAAATT
1 TACATACCAAATT
50285935 TA
1 TA
50285937 ACAGCACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.32
Consensus pattern (13 bp):
TACATACCAAATT
Found at i:50286064 original size:69 final size:69
Alignment explanation
Indices: 50285922--50286231 Score: 476
Period size: 69 Copynumber: 4.5 Consensus size: 69
50285912 ATACCAAATT
**
50285922 TACATACCAAATTTAACAGCACTTTTACACCATAAAATTTAACAGCATATATACAGTAAATAGGC
1 TACATACCAAATTTAACAGCACTTTTACACC--AAAATTTAACAGCATATATACAACAAATAGGC
50285987 AGCATA
64 AGCATA
* * * *
50285993 TACATACCAAATTTAACAGCACTTTTACACCCAAATTTAATAACATATATACAGCAAATAGGCAG
1 TACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGCATATATACAACAAATAGGCAG
50286058 CATA
66 CATA
* * *
50286062 TACATACCAAATTTAACAACACTTTTACACCAAAATTTAACAGCATATATACAACAAATTGGCAA
1 TACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGCATATATACAACAAATAGGCAG
50286127 CATA
66 CATA
* * * * *
50286131 TACATACCAAATTGAGCAGCATTTTTACACCAAAATTTATCAGCATATATACAACAAATGGGCAG
1 TACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGCATATATACAACAAATAGGCAG
50286196 CATA
66 CATA
50286200 TACATACCAAATTTAACAGCACTTTTACACCA
1 TACATACCAAATTTAACAGCACTTTTACACCA
50286232 TAAGATTATA
Statistics
Matches: 218, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
69 187 0.86
71 31 0.14
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.26
Consensus pattern (69 bp):
TACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGCATATATACAACAAATAGGCAG
CATA
Found at i:50286199 original size:22 final size:23
Alignment explanation
Indices: 50286102--50286201 Score: 87
Period size: 22 Copynumber: 4.4 Consensus size: 23
50286092 CAAAATTTAA
50286102 CAGCATATATACAACAAATTG-G
1 CAGCATATATACAACAAATTGAG
* * * *
50286124 CAACATATACATACCAAATTGAG
1 CAGCATATATACAACAAATTGAG
* * * * *
50286147 CAGCATTTTTACACCAAAATTTAT
1 CAGCATATATACAAC-AAATTGAG
*
50286171 CAGCATATATACAACAAA-TGGG
1 CAGCATATATACAACAAATTGAG
50286193 CAGCATATA
1 CAGCATATA
50286202 CATACCAAAT
Statistics
Matches: 59, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
22 27 0.46
23 14 0.24
24 18 0.31
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (23 bp):
CAGCATATATACAACAAATTGAG
Found at i:50286438 original size:69 final size:69
Alignment explanation
Indices: 50286356--50286856 Score: 921
Period size: 69 Copynumber: 7.3 Consensus size: 69
50286346 GGACAGCTTT
* *
50286356 TATATACAACAAATGGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
50286421 AGCA
66 AGCA
50286425 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
50286490 AGCA
66 AGCA
*
50286494 TATATACAGTAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
50286559 AGCA
66 AGCA
* * *
50286563 TATATACAACAAATGGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAT
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
50286628 AGCA
66 AGCA
* *
50286632 TATATATAGCAAATAGGCAACATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
50286697 AGCA
66 AGCA
50286701 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
50286766 AGCA
66 AGCA
*
50286770 TATATACAGTAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
50286835 AGCA
66 AGCA
50286839 TATATACAGCAAATAGGC
1 TATATACAGCAAATAGGC
50286857 TTAAATATAA
Statistics
Matches: 416, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 416 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.25
Consensus pattern (69 bp):
TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
AGCA
Found at i:50287661 original size:41 final size:41
Alignment explanation
Indices: 50287616--50287772 Score: 215
Period size: 41 Copynumber: 3.8 Consensus size: 41
50287606 TTGTATAAAA
* * * * *
50287616 CACCGGCATAAAGCCTGCTAGGCACAAAGCCCGATACATTT
1 CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGATATAATT
* * *
50287657 CACCGGCACAAAGCCTACTAGACATAAAGTCTGATATAATT
1 CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGATATAATT
*
50287698 CACCGGCACAGAGCCTGCTAGGCATAAAGCCTGATATAATT
1 CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGATATAATT
* *
50287739 CACCGGCATAAAGCTTGCTAGGCATAAAGCCTGA
1 CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGA
50287773 ACTTACAAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 101 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (41 bp):
CACCGGCACAAAGCCTGCTAGGCATAAAGCCTGATATAATT
Found at i:50288187 original size:28 final size:30
Alignment explanation
Indices: 50288148--50288206 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 30
50288138 TTTTATTATA
50288148 TTAATATATTTAATTT-ATAA-AACTAACC
1 TTAATATATTTAATTTAATAATAACTAACC
*
50288176 TTAATGAT-TTTACTTTAATAATTAACTAACC
1 TTAAT-ATATTTAATTTAATAA-TAACTAACC
50288207 ATGTCCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
28 12 0.46
29 6 0.23
31 8 0.31
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (30 bp):
TTAATATATTTAATTTAATAATAACTAACC
Found at i:50290306 original size:80 final size:81
Alignment explanation
Indices: 50290181--50290340 Score: 313
Period size: 80 Copynumber: 2.0 Consensus size: 81
50290171 AACAAATTTA
50290181 GAAAGACATGCAAGATCAGTTGCAAGCCCAGCTGTAGGAACAATTAGCTAAGGTACAACAAGACA
1 GAAAGACATGCAAGATCAGTTGCAAGCCCAGCTGTAGGAACAATTAGCTAAGGTACAACAAGACA
50290246 TGAGGGTCAAATACAC
66 TGAGGGTCAAATACAC
50290262 GAAA-ACATGCAAGATCAGTTGCAAGCCCAGCTGTAGGAACAATTAGCTAAGGTACAACAAGACA
1 GAAAGACATGCAAGATCAGTTGCAAGCCCAGCTGTAGGAACAATTAGCTAAGGTACAACAAGACA
50290326 TGAGGGTCAAATACA
66 TGAGGGTCAAATACA
50290341 AGAGTCCCAA
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
80 75 0.95
81 4 0.05
ACGTcount: A:0.41, C:0.19, G:0.23, T:0.16
Consensus pattern (81 bp):
GAAAGACATGCAAGATCAGTTGCAAGCCCAGCTGTAGGAACAATTAGCTAAGGTACAACAAGACA
TGAGGGTCAAATACAC
Found at i:50292147 original size:47 final size:47
Alignment explanation
Indices: 50292078--50292169 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
50292068 AACCACCCAG
50292078 TGGTGATTATTTCACAACCAAGAAATAATGAAGTGGGAGCACAAGGT
1 TGGTGATTATTTCACAACCAAGAAATAATGAAGTGGGAGCACAAGGT
50292125 TGGTGATTATTTCACAACCAAGAAATAATGAAGTGGGAGCACAAG
1 TGGTGATTATTTCACAACCAAGAAATAATGAAGTGGGAGCACAAG
50292170 TTACACCGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.23
Consensus pattern (47 bp):
TGGTGATTATTTCACAACCAAGAAATAATGAAGTGGGAGCACAAGGT
Found at i:50294278 original size:44 final size:44
Alignment explanation
Indices: 50294215--50294304 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
50294205 ACACTGTTAG
50294215 CCAAATCTCTACTCATCATTTTTTTTCTTTCTCCATTTCCTTTC
1 CCAAATCTCTACTCATCATTTTTTTTCTTTCTCCATTTCCTTTC
50294259 CCAAATCTCTACTCATCATTTTTTTTCTTTCTCCATTTCCTTTC
1 CCAAATCTCTACTCATCATTTTTTTTCTTTCTCCATTTCCTTTC
50294303 CC
1 CC
50294305 TTCTCTTCCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.16, C:0.33, G:0.00, T:0.51
Consensus pattern (44 bp):
CCAAATCTCTACTCATCATTTTTTTTCTTTCTCCATTTCCTTTC
Found at i:50296018 original size:35 final size:34
Alignment explanation
Indices: 50295938--50296018 Score: 81
Period size: 35 Copynumber: 2.4 Consensus size: 34
50295928 CATTGCATAT
* * *
50295938 ACTGATCCTGATACTGTAATGGGCTAAGGCCCAC
1 ACTGATACTGTTACTGTAAAGGGCTAAGGCCCAC
* * * *
50295972 AATGATACTGTTACTGTTAAAGGGCTTAGGCCTAG
1 ACTGATACTGTTACTG-TAAAGGGCTAAGGCCCAC
*
50296007 ACTGATTCTGTT
1 ACTGATACTGTT
50296019 TCTATAATAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
34 13 0.35
35 24 0.65
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (34 bp):
ACTGATACTGTTACTGTAAAGGGCTAAGGCCCAC
Found at i:50296939 original size:25 final size:23
Alignment explanation
Indices: 50296887--50296964 Score: 84
Period size: 25 Copynumber: 3.2 Consensus size: 23
50296877 AAAGTAAAAG
* * *
50296887 AGAAAGAAATAGAAAAAGAATGAG
1 AGAAAGAAA-AAAAAAAGAAGGAA
50296911 AGAAAGAAACAAAACAAAGAAGGAA
1 AGAAAGAAA-AAAA-AAAGAAGGAA
50296936 AGAAAGAAAAGAAAAAAAGAAGGAA
1 AGAAAG-AAA-AAAAAAAGAAGGAA
50296961 AGAA
1 AGAA
50296965 GGAGAAAAGT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
24 12 0.26
25 28 0.60
26 7 0.15
ACGTcount: A:0.72, C:0.03, G:0.23, T:0.03
Consensus pattern (23 bp):
AGAAAGAAAAAAAAAAGAAGGAA
Found at i:50296942 original size:4 final size:4
Alignment explanation
Indices: 50296887--50296964 Score: 50
Period size: 4 Copynumber: 19.0 Consensus size: 4
50296877 AAAGTAAAAG
* * * * * *
50296887 AGAA AGAA ATAGA A-AA AGAA TGAG AGAA AGAA ACAAA ACAA AGAA GGAA
1 AGAA AGAA AGA-A AGAA AGAA AGAA AGAA AGAA A-GAA AGAA AGAA AGAA
* *
50296936 AGAA AGAAA AGAA AAAA AGAA GGAA AGAA
1 AGAA AG-AA AGAA AGAA AGAA AGAA AGAA
50296965 GGAGAAAAGT
Statistics
Matches: 56, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
3 2 0.04
4 45 0.80
5 9 0.16
ACGTcount: A:0.72, C:0.03, G:0.23, T:0.03
Consensus pattern (4 bp):
AGAA
Found at i:50297877 original size:41 final size:38
Alignment explanation
Indices: 50297832--50297938 Score: 101
Period size: 37 Copynumber: 2.8 Consensus size: 38
50297822 ACTTCGATTT
* *
50297832 GATGAGACATTGGGTGTCAATTTATTACTACGGATTAATTC
1 GATGAGACACTGGGTGTCAATTTATTACT--GGATTAA-CC
* * * *
50297873 GATGAGGCACTAGGTGCCAATTTACTT--TGGTTTAACC
1 GATGAGACACTGGGTGTCAATTTA-TTACTGGATTAACC
*
50297910 GATGAGATACTGGGTGTCAATTTATTACT
1 GATGAGACACTGGGTGTCAATTTATTACT
50297939 TTAAATTATT
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
36 2 0.04
37 21 0.40
38 7 0.13
40 1 0.02
41 20 0.38
42 2 0.04
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (38 bp):
GATGAGACACTGGGTGTCAATTTATTACTGGATTAACC
Found at i:50304093 original size:44 final size:44
Alignment explanation
Indices: 50304030--50304310 Score: 168
Period size: 44 Copynumber: 6.1 Consensus size: 44
50304020 CATCGTGGCC
50304030 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-GCTACA
* * * * ***
50304074 AATCTTATCTCCCTGAAGTTACAGTAGAGCAAATTGAAGATGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * * * *
50304118 AATCTTATTTCCTTGAAGTTACATTGGAACAGATTAAAGCTACAAGTTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC-----A
** * ***
50304167 CGAATCTTATCTCCCTGAAAATGCAGTGGAGCAGATTGAAGATGTG
1 --AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* ** * *
50304213 AATCTTATTTCTTTGAAGTTGCAGTGGAACAGATTAAAGTGACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T----TG--AAGCTACA
** * *
50304264 AATCTTATCTCCCTGAAGTTGCAGTATAGTAGATTGAAGCAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
50304308 AAT
1 AAT
50304311 TCTACACCTC
Statistics
Matches: 173, Mismatches: 49, Indels: 30
0.69 0.19 0.12
Matches are distributed among these distances:
44 103 0.60
45 3 0.02
46 2 0.01
49 2 0.01
50 1 0.01
51 62 0.36
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
Found at i:50304287 original size:95 final size:95
Alignment explanation
Indices: 50304070--50304302 Score: 351
Period size: 95 Copynumber: 2.5 Consensus size: 95
50304060 AGATTAAGGC
* *
50304070 TACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAAATTGAAGATGTGAATCTTATTTCCTTGAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATGTGAATCTTATTTCCTTGAA
*
50304135 GTTACATTGGAACAGATTAAAGCTACAAGT
66 GTTACAGTGGAACAGATTAAAGCTACAAGT
* ** * *
50304165 TACGAATCTTATCTCCCTGAAAATGCAGTGGAGCAGATTGAAGATGTGAATCTTATTTCTTTGAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATGTGAATCTTATTTCCTTGAA
*
50304230 GTTGCAGTGGAACAGATTAAAG-TGACAAGT
66 GTTACAGTGGAACAGATTAAAGCT-ACAAGT
* *
50304260 TACAAATCTTATCTCCCTGAAGTTGCAGTATAGTAGATTGAAG
1 TACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAG
50304303 CAACAAATTC
Statistics
Matches: 122, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
94 1 0.01
95 121 0.99
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (95 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATGTGAATCTTATTTCCTTGAA
GTTACAGTGGAACAGATTAAAGCTACAAGT
Found at i:50304325 original size:95 final size:95
Alignment explanation
Indices: 50304070--50304334 Score: 241
Period size: 95 Copynumber: 2.8 Consensus size: 95
50304060 AGATTAAGGC
** * * *** **
50304070 TACAAATCTTATCTCCCTGAAGTTACAGTAGAGCAAATTGAAGATGTGAATCTTATTTCCT-TGA
1 TACAAATCTTATCTCCCTGAAAATGCAGTAGAGCAGATTGAAGATACAAATCTTA-CACCTCTGA
*
50304134 AGTTACATTGGAACAGATTAAAGCTACAAGT
65 AGTTACAGTGGAACAGATTAAAGCTACAAGT
* * *** *** *
50304165 TACGAATCTTATCTCCCTGAAAATGCAGTGGAGCAGATTGAAGATGTGAATCTTATTTCTTTGAA
1 TACAAATCTTATCTCCCTGAAAATGCAGTAGAGCAGATTGAAGATACAAATCTTACACCTCTGAA
*
50304230 GTTGCAGTGGAACAGATTAAAG-TGACAAGT
66 GTTACAGTGGAACAGATTAAAGCT-ACAAGT
** * *
50304260 TACAAATCTTATCTCCCTGAAGTTGCAGTATAGTAGATTGAAGCA-ACAAAT-TCTACACCTCTG
1 TACAAATCTTATCTCCCTGAAAATGCAGTAGAGCAGATTGAAG-ATACAAATCT-TACACCTCTG
*
50304323 AAGTTAGAGTGG
64 AAGTTACAGTGG
50304335 GTTAGAATGA
Statistics
Matches: 142, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
94 6 0.04
95 135 0.95
96 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (95 bp):
TACAAATCTTATCTCCCTGAAAATGCAGTAGAGCAGATTGAAGATACAAATCTTACACCTCTGAA
GTTACAGTGGAACAGATTAAAGCTACAAGT
Found at i:50305913 original size:3 final size:3
Alignment explanation
Indices: 50305905--50306058 Score: 91
Period size: 3 Copynumber: 48.7 Consensus size: 3
50305895 TAGTTTGCCT
50305905 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTCCA TTA TTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A TTA TT-A
* * ** *
50305953 TTTA TATA TTCA TTTA TTA CTTT TTA TGTA TT- TTCA -AA AAA TTA -GA
1 -TTA T-TA TT-A -TTA TTA -TTA TTA T-TA TTA TT-A TTA TTA TTA TTA
* * * *
50305999 TTA TTTA TTA TTA TTG TTA TTA CTA TTG TTA TTA TTA TCA TT- TTCA
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
50306045 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
50306059 TACGCATATT
Statistics
Matches: 120, Mismatches: 15, Indels: 32
0.72 0.09 0.19
Matches are distributed among these distances:
2 6 0.05
3 90 0.75
4 17 0.14
5 7 0.06
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:50311763 original size:21 final size:22
Alignment explanation
Indices: 50311718--50311763 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
50311708 CTGTTTGTGA
*
50311718 AACCTAGTGTGATTTTCTAGTAT
1 AACCTAGTGTAATTTTCTAG-AT
*
50311741 AACCTTGTGTAATTTTCTA-AT
1 AACCTAGTGTAATTTTCTAGAT
50311762 AA
1 AA
50311764 ATAATTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
23 17 0.81
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (22 bp):
AACCTAGTGTAATTTTCTAGAT
Found at i:50318499 original size:21 final size:21
Alignment explanation
Indices: 50318449--50318501 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
50318439 GGGACAGATT
*
50318449 GAATATATATAATTAAGGTTC
1 GAATATTTATAATTAAGGTTC
* *
50318470 AAATAATTTGTAATTAA-GTTCC
1 GAAT-ATTTATAATTAAGGTT-C
50318492 GAATATTTAT
1 GAATATTTAT
50318502 CTGTTAATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.42
Consensus pattern (21 bp):
GAATATTTATAATTAAGGTTC
Found at i:50319947 original size:14 final size:14
Alignment explanation
Indices: 50319928--50319955 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50319918 CCCTCATTCC
50319928 TATGTTAGGTTCAT
1 TATGTTAGGTTCAT
50319942 TATGTTAGGTTCAT
1 TATGTTAGGTTCAT
50319956 GGTATTGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (14 bp):
TATGTTAGGTTCAT
Found at i:50320175 original size:38 final size:38
Alignment explanation
Indices: 50320116--50320212 Score: 151
Period size: 38 Copynumber: 2.6 Consensus size: 38
50320106 TCCTTCTAGC
*
50320116 TTCTGCCGATTTTCTCCCTCTGTTT-TTTATCTTTTCTT
1 TTCTGCCGATTTGCTCCCTCTGTTTATTT-TCTTTTCTT
* *
50320154 TTTTGCCGATTTGCTCTCTCTGTTTATTTTCTTTTCTT
1 TTCTGCCGATTTGCTCCCTCTGTTTATTTTCTTTTCTT
50320192 TTCTGCCGATTTGCTCCCTCT
1 TTCTGCCGATTTGCTCCCTCT
50320213 ATTTCCCCTT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
38 50 0.94
39 3 0.06
ACGTcount: A:0.05, C:0.27, G:0.10, T:0.58
Consensus pattern (38 bp):
TTCTGCCGATTTGCTCCCTCTGTTTATTTTCTTTTCTT
Found at i:50322211 original size:16 final size:17
Alignment explanation
Indices: 50322185--50322239 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 17
50322175 TTGAGTAAAT
50322185 TTATATAAGAATTTTAA
1 TTATATAAGAATTTTAA
50322202 TTAT-TAAGAATTTT-A
1 TTATATAAGAATTTTAA
* * *
50322217 TTAAATTATATATTTTAA
1 TTATATAAGA-ATTTTAA
50322235 TTATA
1 TTATA
50322240 ATATATTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
15 4 0.13
16 13 0.42
17 9 0.29
18 5 0.16
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (17 bp):
TTATATAAGAATTTTAA
Found at i:50322245 original size:16 final size:16
Alignment explanation
Indices: 50322224--50322269 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
50322214 TTATTAAATT
50322224 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
50322240 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
50322255 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
50322270 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:50322365 original size:16 final size:16
Alignment explanation
Indices: 50322344--50322389 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
50322334 TTATTAAATT
50322344 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
50322360 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
50322375 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
50322390 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:50322387 original size:120 final size:120
Alignment explanation
Indices: 50322174--50322627 Score: 829
Period size: 120 Copynumber: 3.8 Consensus size: 120
50322164 GCTAACAATT
* *
50322174 TTTGAGTAAATTTATATAAGAATTTTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAT
1 TTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAT
50322239 AATATATTTAATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGA
66 AATATATTTAATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGA
50322294 TTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAT
1 TTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAT
50322359 AATATATTTAATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGA
66 AATATATTTAATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGA
50322414 TTTGAGTAAATTCATATAAGAATATTGAATTATTAAGAATTTTATTAAATTATATA-TTTAATTA
1 TTTGAGTAAATTCATATAAGAATATT-AATTATTAAGAATTTTATTAAATTATATATTTTAATTA
* *
50322478 TAATATATTTAATAATTATTATGTTAAATTATATTTTATAGTATCATATATTATGA
65 TAATATATTTAATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGA
*
50322534 TTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAT
1 TTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAT
*
50322599 AATATATTTAATAAAAATTATGTTTAAAT
66 AATATATTTAATAATAATTATG-TTAAAT
50322628 ATGATTAAAT
Statistics
Matches: 324, Mismatches: 7, Indels: 5
0.96 0.02 0.01
Matches are distributed among these distances:
119 28 0.09
120 261 0.81
121 35 0.11
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
TTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAT
AATATATTTAATAATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGA
Found at i:50322469 original size:38 final size:39
Alignment explanation
Indices: 50322180--50322588 Score: 150
Period size: 38 Copynumber: 10.3 Consensus size: 39
50322170 AATTTTTGAG
*
50322180 TAAATTTATATAAGAAT-TTTAAT-TATTAAGAATTTTAT
1 TAAA-TTATATAAGAATATATAATATATTAAGAATTTTAT
** * *
50322218 TAAATTATATATTTTAAT-TATAATATATTTAATAATAATTATGT
1 TAAATTATATA--AGAATATATAATATA-TTAAGAAT--TT-TAT
* *** * * * *
50322262 TAAATTATCT-TTTATAGTATCATATATTATG-ATTTGAG
1 TAAATTATATAAGAATA-TATAATATATTAAGAATTTTAT
50322300 TAAATTCATATAAGAATAT-TAAT-TATTAAGAATTTTAT
1 TAAATT-ATATAAGAATATATAATATATTAAGAATTTTAT
** * *
50322338 TAAATTATATATTTTAAT-TATAATATATTTAATAATAATTATGT
1 TAAATTATATA--AGAATATATAATATA-TTAAGAAT--TT-TAT
* *** * * * *
50322382 TAAATTATCT-TTTATAGTATCATATATTATG-ATTTGAG
1 TAAATTATATAAGAATA-TATAATATATTAAGAATTTTAT
50322420 TAAATTCATATAAGAATAT-TGAAT-TATTAAGAATTTTAT
1 TAAATT-ATATAAGAATATAT-AATATATTAAGAATTTTAT
** *
50322459 TAAATTATATATTTAAT-TATAATATATTTAATAATTATTATGT
1 TAAATTATATA-AGAATATATAATATA-TTAAGAATT-TTA--T
*** * * * *
50322502 TAAATTATAT-TTTATAGTATCATATATTATG-ATTTGAG
1 TAAATTATATAAGAATA-TATAATATATTAAGAATTTTAT
*
50322540 TAAATTCATATAAGAATAT-TGAT-TATTAAGAATTTTAT
1 TAAATT-ATATAAGAATATATAATATATTAAGAATTTTAT
50322578 TAAATTATATA
1 TAAATTATATA
50322589 TTTTAATTAT
Statistics
Matches: 276, Mismatches: 57, Indels: 77
0.67 0.14 0.19
Matches are distributed among these distances:
37 29 0.11
38 67 0.24
39 51 0.18
40 23 0.08
41 36 0.13
42 9 0.03
43 39 0.14
44 22 0.08
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (39 bp):
TAAATTATATAAGAATATATAATATATTAAGAATTTTAT
Found at i:50322854 original size:16 final size:16
Alignment explanation
Indices: 50322831--50322879 Score: 73
Period size: 16 Copynumber: 3.1 Consensus size: 16
50322821 AATTGATTTG
50322831 CTATTACACCTCTATT
1 CTATTACACCTCTATT
50322847 AC-ATTACACCTCTATT
1 -CTATTACACCTCTATT
*
50322863 CTATTACGCCTCTATT
1 CTATTACACCTCTATT
50322879 C
1 C
50322880 CAATACAGCG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 1 0.03
16 28 0.93
17 1 0.03
ACGTcount: A:0.24, C:0.33, G:0.02, T:0.41
Consensus pattern (16 bp):
CTATTACACCTCTATT
Found at i:50329717 original size:132 final size:132
Alignment explanation
Indices: 50329474--50330399 Score: 1597
Period size: 132 Copynumber: 7.0 Consensus size: 132
50329464 GGTTGTCAGC
*
50329474 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTTTGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* * * *
50329539 TCACCACATCAGGAAACTTTGGCTGCAGCTGCTGCCTACACAGACTGGCTTGTTGATGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
50329604 TA
131 TA
*
50329606 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATACCTCAACTTCAAATGGCTATTCTGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* * *
50329671 TCACCACATCAGGAAACTTCAGCTGCAGCTGCTGCCGTCACGGACTGGCTTGTTGATGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
50329736 TA
131 TA
50329738 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATA---CAACTTCAAATGGCTATTCTGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* * *
50329800 TCACCACATCAGGAAACTTTGGCTGCAGCTGCTGCCGACATGGACTGGCCTGTTGATGAGGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
50329865 TA
131 TA
* *
50329867 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTACTCCGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
50329932 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
50329997 TA
131 TA
* *
50329999 TACAAACTTCATTTAGCCCTGCACCTAAAGGCAATATCTCAACTTCTAATGGCTATTCTGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* * *
50330064 TCACCACATCAGGAAACTTTGGCTGCAGCTGCTGCCGACATGGACTGGCCTGTTGATGAGGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
50330129 TA
131 TA
*
50330131 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCCGGAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
*
50330196 TCACCACATCAGGAAACTTCGGCTGCAGCTGCAGCCGACACGGACTGGCCTGTTGATGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
50330261 TA
131 TA
* * *
50330263 TACAAACTTCATTTAGCCCTGCACCTAAAGGCAATATCTCAACTTCTAATGGCTATTCTGCAAGT
1 TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
* *
50330328 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCAACATGGACTGGCCTGTTGATGAAGATCT
66 TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
50330393 TA
131 TA
50330395 TACAA
1 TACAA
50330400 GCTTTCTTTA
Statistics
Matches: 752, Mismatches: 39, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
129 123 0.16
132 629 0.84
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (132 bp):
TACAAACTTCATTTAGCCCTGCACCTCAAGGCAATATCTCAACTTCAAATGGCTATTCTGGAAGT
TCACCACATCAGGAAACTTCGGCTGCAGCTGCTGCCGACACGGACTGGCCTGTTGATGAAGATCT
TA
Found at i:50331196 original size:19 final size:19
Alignment explanation
Indices: 50331172--50331209 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
50331162 TTTTCTAATT
**
50331172 TTTAATTTCTTTAATTTTA
1 TTTAATTTCCATAATTTTA
50331191 TTTAATTTCCATAATTTTA
1 TTTAATTTCCATAATTTTA
50331210 AAAAAAGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTAATTTCCATAATTTTA
Found at i:50332193 original size:14 final size:14
Alignment explanation
Indices: 50332174--50332224 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
50332164 GAAAGAGTCA
*
50332174 TTTAATAATATATT
1 TTTAATATTATATT
*
50332188 TTTAATATTATTTT
1 TTTAATATTATATT
50332202 TTTAATTATTATATT
1 TTTAA-TATTATATT
*
50332217 TTTGATAT
1 TTTAATAT
50332225 AAAATATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
TTTAATATTATATT
Found at i:50333687 original size:74 final size:74
Alignment explanation
Indices: 50333603--50333934 Score: 383
Period size: 75 Copynumber: 4.5 Consensus size: 74
50333593 TTTTTTTATT
* * * * *
50333603 TCAATAATATAGTTATTTACAACCTACGAAAAAATGAAAAAATTTGTTTGTATTTTATTCTATTT
1 TCAATAATATACTTATTTACAATCTACGAAAAAATGAAAAAAGTTGTTTGTATTGTATTCTATTG
*
50333668 TATTTTAGA
66 TATTTTACA
* * * *
50333677 TCAATAATATATTTATTTACAATCTACAAAAAAATGAAAAAAAGTTGTTTGTATTATACTCTATT
1 TCAATAATATACTTATTTACAATCTACGAAAAAATG-AAAAAAGTTGTTTGTATTGTATTCTATT
50333742 GTATTTTACA
65 GTATTTTACA
* * *
50333752 TCAATAATGTACTTATTTACAAAT-TAC-AAAAAATTGAAAAAA-TTGTCTGTATTGT-TTGTAT
1 TCAATAATATACTTATTTAC-AATCTACGAAAAAA-TGAAAAAAGTTGTTTGTATTGTATTCTAT
50333813 TGTATTTTACA
64 TGTATTTTACA
* * * *
50333824 TTAATAACATACTTATTTACAGTTTACGAAAAAATG-AAAAAGTTGTTTGTATTGTATTCTATTG
1 TCAATAATATACTTATTTACAATCTACGAAAAAATGAAAAAAGTTGTTTGTATTGTATTCTATTG
*
50333888 CATTTTTACA
66 TA-TTTTACA
* **
50333898 T---TAATATACTTATTTACAATGTACCCAAAAATGAAAA
1 TCAATAATATACTTATTTACAATCTACGAAAAAATGAAAA
50333935 GTCATGAAAA
Statistics
Matches: 223, Mismatches: 26, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
71 34 0.15
72 52 0.23
73 25 0.11
74 53 0.24
75 56 0.25
76 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.08, T:0.42
Consensus pattern (74 bp):
TCAATAATATACTTATTTACAATCTACGAAAAAATGAAAAAAGTTGTTTGTATTGTATTCTATTG
TATTTTACA
Found at i:50334106 original size:34 final size:34
Alignment explanation
Indices: 50334063--50334131 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
50334053 GCTTACTATG
*
50334063 CCTTAGGTTCCTACAATAACTACATAACCTTGGT
1 CCTTAGGTTCCTACAATAACTACATAACCCTGGT
50334097 CCTTAGGTTCCTACAATAACTACATAACCCTGGT
1 CCTTAGGTTCCTACAATAACTACATAACCCTGGT
50334131 C
1 C
50334132 AGTCTATCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (34 bp):
CCTTAGGTTCCTACAATAACTACATAACCCTGGT
Found at i:50334943 original size:15 final size:15
Alignment explanation
Indices: 50334905--50334946 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
50334895 ATATTCATGA
50334905 ATGAAAATAATGTAT
1 ATGAAAATAATGTAT
*
50334920 ATGTTAAATAATG-AT
1 ATG-AAAATAATGTAT
50334935 ATAGAAAATAAT
1 AT-GAAAATAAT
50334947 ATTTACTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 14 0.61
16 9 0.39
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (15 bp):
ATGAAAATAATGTAT
Found at i:50336233 original size:25 final size:24
Alignment explanation
Indices: 50336201--50336250 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 24
50336191 AGACTCGAAA
50336201 ACGGAAATAATCAACTTAAACCCTG
1 ACGGAAATAATCAACTT-AACCCTG
50336226 ACGGAAATAATCAACTTAACCCTG
1 ACGGAAATAATCAACTTAACCCTG
50336250 A
1 A
50336251 GGCCTCTACG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.44, C:0.24, G:0.12, T:0.20
Consensus pattern (24 bp):
ACGGAAATAATCAACTTAACCCTG
Found at i:50352537 original size:917 final size:914
Alignment explanation
Indices: 50350747--50355385 Score: 4377
Period size: 918 Copynumber: 5.0 Consensus size: 914
50350737 GGAGGTGGTC
* * * *
50350747 AGTTTGCTACTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCTCATTTCTCTCAAG-TTATA
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTT-TA
** * *
50350811 CTTTAATG---G--TTGTTTT-GTTTTCCATGTCCATTTCTTTTACTTTGAGCATGAGTAGCTAA
65 CTTTAATGACTGCTTTGTTTTCCATTTCCATGTCTATTTCTTTTACTTTGAGCATGAGTAGTTAA
* * * * *
50350870 ACCTCAAAGGAGGTTGGTTGATGGAGATGTAGGTAAACTAAAATCTTTGGACAAATGACTAAATC
130 ACCTAAAAGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTT-G------G-----A-C
* * * * *
50350935 ATAATAAATTATTATAAATCGAATAGACCTGAGAACTTAGGTAGTGACTCCCCTAAGAGAATATT
182 ---A-AAA-GA--ATAAATCGAATAGACCTTAGAACTTAGGTAGTGAC-GCCCTAAGGGAATATC
* *** * * * * ** *
50351000 TAGGTAAGTGAGACTGGAAGGTAATGTTTTCGTGCACC-GATTCATTAGTCTCAGGCTAGCTAGT
239 TAGGCAAGTGAGACCAAAAGGTAATCTTGTCATGCACCTG-TTCATTAGTCCCA-ATTAACTAGT
* * * * * *
50351064 GAGATGGGAAGATAAATCGTAGCTAATTCGTTTAAGTCGGTAAAATTGAGATTGAAAGATAAATT
302 GAGATCGAAAGATAAATCGTAGATAATTCGTCTAAGTCGATAAAATTGAGATTGAAAGATAAAAT
* * * * *
50351129 GGAGTCACTTAGTAATTTACACGATTTAAGTCCCTTATTTAAGGATCGGTGAACCAAATCAAAGT
367 GGAGCCACTTAGTAATTTACACGATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGT
* *
50351194 CAACTAACCACCATTAGTTATTTATTGGATAGTCCC-TTAGTTTTACATTCTTTGCAATTTAGTC
432 CAACCAACCACCATTAGTTATTTATTGGATAGTCCCATT--TTTTACATTATTTGCAATTTAGTC
** * * *
50351258 CTTAGAGTAGCATATCTAATTTTCGAGCAATATTTTCTTGTTATGAATCGTTGTACTATAAAATC
495 CTTAGAGTAGCATATCTAATTTTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAATT
** * * * ** ** *
50351323 GTAGTAGT-GTTTACTTAGACTATATTGTGTATGCTAGATATTTCTCAATCGTCATCTTTTTTAG
560 GTAGTAGTAG-CCACTTAGACTCTATTGTGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGG
* * * * * * *
50351387 GTTTGACCTCTTGGAACACTTCGTGTTCCATCAGAACTATAAATATTACAACTGACTTATATGCT
624 GTTTAACC-CTTGGAATACTTTGTGTTCCATCGGAACTATAAATATTACAAATGACCTATACGCT
* * * * *
50351452 TGCAGTAAAACCAGGCTTTAAAAAATTGTTTTATAAGTTCGTTGGTTTAATGTGCATATGTGAAG
688 TGCAGTAAAACCAGGCTTTAAAAAATTGTTTTATAAGTTTGTT-TTTTAATGCGCACATGCGAAG
* * * * * *
50351517 CTGGTCAACTACCCCATGTTTACAATCCCGATGGACTCCATATGCTACTATAATCGAGCTATGCT
752 CCGGTCAACTACCTCATGTTTACTATTCCGATGGACTCCATATGCTGCTATAATCGAGCTATGAT
* * * **
50351582 TTTACAAAATATACCCCATGTTTAACGTCCTTGCGGACTACTCCGTGCTTACTGTCCCGGCGGAC
817 CTTACACAATATACCCCATGTTTAACGTCCTGGCGGACTACTCCGTGCTTACTGTCCCGGCAAAC
50351647 TATACCAGTTGTCTTAGTCGAGCCATGGTCTTA
882 TATACCAGTTGTCTTAGTCGAGCCATGGTCTTA
* * *
50351680 AGTTTTCTGCTCTTCAAGTTTTCTTGCATAAAAATCTCAACTTTCATATTTTTTCTCAAGCTATA
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACA-TTTTTCTCAAGCTTTA
* * *
50351745 CTTTAATGACTGCTTTGTTTTCAATTTCCATGTCTATTTCTTTTATTTTCAGCATGAGTAGTTAA
65 CTTTAATGACTGCTTTGTTTTCCATTTCCATGTCTATTTCTTTTACTTTGAGCATGAGTAGTTAA
* * * *
50351810 ACCTAAAAGAAGATTGGTTGATAGAGATATGGGCAAACTAAAACCTTTGGAAAAAAGAATAAATC
130 ACCTAAAAGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTTGGACAAAAGAATAAATC
* * * * * *
50351875 GAATACACCTTAGAACGTAGATAGTGATGCCTCTAAGGGTATATCTAGGCAAGTGAGACCAGAAG
195 GAATAGACCTTAGAACTTAGGTAGTGACGCC-CTAAGGGAATATCTAGGCAAGTGAGACCAAAAG
* ** * *
50351940 GTAATGTTGTCATGCACCTGTTCATTAGTCCCGAATTAACCGGTTAAATCGAAAGATAAATCGTA
259 GTAATCTTGTCATGCACCTGTTCATTAGTCCC-AATTAACTAGTGAGATCGAAAGATAAATCGTA
* * * * *
50352005 GATAATTCATCTAAGTC-AGAAAATT-TGATATCAGAAGATAAAATTGAGCCA--TACTGTAATT
323 GATAATTCGTCTAAGTCGATAAAATTGAGAT-TGA-AAGATAAAATGGAGCCACTTA--GTAATT
* * * *
50352066 TGCGCAATTTAGGT-CCTT-TCTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTA
384 TACACGATTTAAGTCCCTTGT-TTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTA
*
50352129 GTTATTTATTGGATAGTCCCATTTTTTACATTTTTTGCAATTTAGTCCTTAGAGTAGCATATCTA
448 GTTATTTATTGGATAGTCCCATTTTTTACATTATTTGCAATTTAGTCCTTAGAGTAGCATATCTA
* * * * *
50352194 CTTTTCTTCCAATATTTTCTTGTTATGAATTTTCATACTATAAAACCTT-T-GTAGTTGCCACTT
513 ATTTTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAA--TTGTAGTAGTAGCCACTT
* * *
50352257 AGACTCTATTGTGTATGTTAGTCATTGCTCAATAACCATCTCCTTTGGGTTTAACCCTTGGAATA
576 AGACTCTATTGTGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTTAACCCTTGGAATA
* * * * * *
50352322 ATTCGTTTTCCATTGGAACTATAAATTTTACAAATGACCTATACGCTTGTAGTAAAACC-GAGCT
641 CTTTGTGTTCCATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAG-GCT
* * * * * *
50352386 TTAAAAAATTATTTTATAAGTTAT-TTTCTTTAATGTGCACATGCGAAGCCAGTCAACAACTTCG
705 TTAAAAAATTGTTTTATAAGTT-TGTTT-TTTAATGCGCACATGCGAAGCCGGTCAACTACCTCA
* * * * * *
50352450 TATTTACTATTTCGGTGGACTCCATATGCTGCTATAATTGAGCTATGATCTTACCCAATATGCCC
768 TGTTTACTATTCCGATGGACTCCATATGCTGCTATAATCGAGCTATGATCTTACACAATATACCC
* * * * * **
50352515 TATATTTAACGTCCTGGCGGACTAC-CTCGTGTTTACTGTCTCGGCGAACTATACTGGTTGTCAT
833 CATGTTTAACGTCCTGGCGGACTACTC-CGTGCTTACTGTCCCGGCAAACTATACCAGTTGTC-T
* * *
50352579 T-GCCGAGCGATGGTATTA
896 TAGTCGAGCCATGGTCTTA
* * * *
50352597 A-TTTTCTGCTCTTTAAGTTTTCTTTCATAGAAATCTCAACTTTCATATTTTTCTTAAGCTTTAC
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTTTAC
* * *
50352661 TTTAATAACTGCTTTGTTTTCCATTTCCATGTCCATTTCTTTTTCTTTGAGCATGAGTAGTTAAA
66 TTTAATGACTGCTTTGTTTTCCATTTCCATGTCTATTTCTTTTACTTTGAGCATGAGTAGTTAAA
* * * * * * * *
50352726 CCTCAAGGAAGGTTGGTTGATGGAAATGTGGGTGAAA-TAAAACCTTCGGACAAAATACTAAATT
131 CCTAAAAGAAGGTTGGTTGATGGAGATATGGGT-AAACTAAAACCTTTGGACAAAAGAATAAATC
* * * * * *
50352790 GAATAAACCTTAGAACATAGGTAGTGACACCCATAAGTGAATATCTAGACAAGTGAGACCAGAAG
195 GAATAGACCTTAGAACTTAGGTAGTGACGCCC-TAAGGGAATATCTAGGCAAGTGAGACCAAAAG
* ** *
50352855 GTAATCTTGTCATGCA-CTCGTTTATTAGTCTCGGATTAATTAGTGAGATCGAAAGATAAATCGT
259 GTAATCTTGTCATGCACCT-GTTCATTAGTC-CCAATTAACTAGTGAGATCGAAAGATAAATCGT
* * * * *
50352919 AGCTAATTCGTTTAAGTCGATAAAATTGAGATTGAAAGATAAAATGGAGTCACCTAGTAATTTAT
322 AGATAATTCGTCTAAGTCGATAAAATTGAGATTGAAAGATAAAATGGAGCCACTTAGTAATTTAC
* * * * * * *
50352984 ACGATTTAATTCCTTTTTTTGAGGATCGGTGAATCACATCAAATTCAACCAACCACCATTAATTA
387 ACGATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAGTTA
* * *
50353049 TTTATTGGATA--CCCTCTTAGTTTTACATTATTTGCAATTAAGTCCTCAGAGTAGCATATCTAA
452 TTTATTGGATAGTCCC-ATT--TTTTACATTATTTGCAATTTAGTCCTTAGAGTAGCATATCTAA
* * * * *
50353112 TTTTCTTGCAATATTTTCTTATTATGAGTTGTCGTATTATAAAATTGTAGTAGGAGCCACTTAAA
514 TTTTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAATTGTAGTAGTAGCCACTTAGA
* *
50353177 CTCTATTATGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTCAACCCCTTGGAATACT
579 CTCTATTGTGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTTAA-CCCTTGGAATACT
* * * ***
50353242 TTATGTTCCATCGGAACTATAAATATTACAATTGACCTATATGCTTATTGTAAAACCAGGCTTT-
643 TTGTGTTCCATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAGGCTTTA
** * * * * * *
50353306 AAATTTTTTTTTATGAGTTTGTTTTTTTAATGCGTAGATACGAAGCCGGTCAACTACC-CTTTGT
708 AAAAATTGTTTTATAAGTTTG-TTTTTTAATGCGCACATGCGAAGCCGGTCAACTACCTC-ATGT
* * * * * * *
50353370 TTA-TTTTCCTA-GCAGACTCCATATGTTGCCATAA-CTGAGCTATGGTTTTACACAATATACCT
771 TTACTATTCCGATG--GACTCCATATGCTGCTATAATC-GAGCTATGATCTTACACAATATACCC
* ** * * * ** *
50353432 CATGTTTAACGTCTTGATGAACTACTTCATGCTTACTGTATCGGTAAACTACCTCATATTTACTA
833 CATGTTTAACGTCCTGGCGGACTACTCCGTGCTTACTGTCCCGG----C-A----A-A-CTA-TA
* * *
50353497 TCTCAGTGGACTATATTGGTTGCCATAGAAGAGCCATGGTATTA
886 -C-CAGTTGTCT-TA---G-T--C------GAGCCATGGTCTTA
* * * *
50353541 AGTTTTCTTCTCTTTAAGTTTTCTTGCATAAAACTCGCAACATTCACATTTTTCTCAAGCTTTAC
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTTTAC
* * *
50353606 TTTAAT-AGCTGCATTGTTTTCCATTTCTATGTCCT-TTTCTTTTACTTTGAGCATGAGTAGCTA
66 TTTAATGA-CTGCTTTGTTTTCCATTTCCATGT-CTATTTCTTTTACTTTGAGCATGAGTAGTTA
* * * * * * * *
50353669 AACTTCAAGGAAGGTTGGTTGATTGATATATGGGTAAACTAAAACATTTGGACAAAGGACTAAAT
129 AACCTAAAAGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTTGGACAAAAGAATAAAT
* * * *
50353734 CAAATAGACCTTAGAACTTAGGTAGCGACGCCCTAAGGGAATATTTAGGCAAGTGAGACTAAAAG
194 CGAATAGACCTTAGAACTTAGGTAGTGACGCCCTAAGGGAATATCTAGGCAAGTGAGACCAAAAG
* * * *
50353799 GCAATCTTTTCATGCACCTGTTCATTAGTACCAGATTAACTAGTGAGATCAAAAGATAAAATCGT
259 GTAATCTTGTCATGCACCTGTTCATTAGTCCCA-ATTAACTAGTGAGATCGAAAGAT-AAATCGT
* * * *
50353864 AGCTCATTCGTCCAAGTCGATAAAATTGAGATTGAAAGATAAAATGGAGTCACTTAGTAATTTAC
322 AGATAATTCGTCTAAGTCGATAAAATTGAGATTGAAAGATAAAATGGAGCCACTTAGTAATTTAC
* *
50353929 ACGATTTAAGTCCCTTGTTTGAGGATCGGTGAAACACATCGAATTCAACCAACCACCATTAGTTA
387 ACGATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAGTTA
* * * * * *
50353994 TATATTTGATAGTCCCTTATTTTTACACTATTTACAATTTAGTCCTTAGAGTAGCATATCTAATA
452 TTTATTGGATAGTCCCAT-TTTTTACATTATTTGCAATTTAGTCCTTAGAGTAGCATATCTAATT
** * *
50354059 TTCTTGTTATATTTTCTTGTTATGAATTGTCATACTATAAAATTGTAGTAGAAGCCACTTAGACT
516 TTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAATTGTAGTAGTAGCCACTTAGACT
* ** ** *
50354124 CTATTGTGTATGATAGTTATTGCTCAATGTCCATCTCCTTTGGGATCGACCCCTTGGAATACTTT
581 CTATTGTGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGG-TTTAACCCTTGGAATACTTT
* * * *
50354189 GTGTTCTATTGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTATAACCAGGCTTTACA
645 GTGTTCCATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAGGCTTTAAA
* ** * **
50354254 AAATTGTTTTATAAGTTTGTTGTTTTAATGCACACATATGAAGCCGGTCAACTACCCCATACTTA
710 AAATTGTTTTATAAGTTTGTT-TTTTAATGCGCACATGCGAAGCCGGTCAACTACCTCATGTTTA
** * * * * * * * *
50354319 CTA-TCCTGGCGGACTCTATATGCTACCATAGTCGAGTTATGGTATTACATAATATACCCCATGT
774 CTATTCC-GATGGACTCCATATGCTGCTATAATCGAGCTATGATCTTACACAATATACCCCATGT
* * * ** *
50354383 TTAATGTCTTGGCGAACTACTCTATGCTTACTATCCCGGCAAACGTATTTATTGTCCCAATGGAC
838 TTAACGTCCTGGCGGACTACTCCGTGCTTACTGTCCCGGCAAAC-TA--TA-----CC-A--G--
* *
50354448 TATACTGGTTTCCATAGTAGAGCCATGGTCTTA
890 --T--T-G--T-CTTAGTCGAGCCATGGTCTTA
* ** * * * * *
50354481 ATTTTTCTTTTCATTAAGTTTTCTTGCATAAAAATCTCAAATTTTACATTTTTCTTAAGTTTTAC
1 AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTTTAC
** * *
50354546 TTTAATGGTTGCTTTGTTTTCCA-TT-C-TGTC-ATTTTCTTTAACTTTAAGCATGAGTA-TCTA
66 TTTAATGACTGCTTTGTTTTCCATTTCCATGTCTA-TTTCTTTTACTTTGAGCATGAGTAGT-TA
* * *
50354606 AACCTCAAAA-AAGGTTGGTTGATGGAGATGTAGGTAAACTAAAACCTTTGGACAAAGGAATAAA
129 AACCT-AAAAGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTTGGACAAAAGAATAAA
* *
50354670 TTGAATAGACCTTAGAACTTAGGTAGTGAAGCCCCTAAGGGAATATCTAGGCAAGTGAGACCAAA
193 TCGAATAGACCTTAGAACTTAGGTAGTGACG-CCCTAAGGGAATATCTAGGCAAGTGAGACCAAA
* * *
50354735 AGGTAATATTGTCATCCACCTG-----T--T--C-----A-T--T-AGATCGAAAGATGAATCGT
257 AGGTAATCTTGTCATGCACCTGTTCATTAGTCCCAATTAACTAGTGAGATCGAAAGATAAATCGT
* * * *
50354782 AGATAATTCGTCTAAGTCGGTAAAATTGAGATCGGAAGAAAAAATGGAGCCACTTAGTAATTTAC
322 AGATAATTCGTCTAAGTCGATAAAATTGAGATTGAAAGATAAAATGGAGCCACTTAGTAATTTAC
* * * *
50354847 GCGATTTAAGTCCCTTGTTTGAGCATCGGTGAACCACATTGAAGTCAACCAACCATCATTAGTTA
387 ACGATTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAGTTA
* * *
50354912 TTTATTGGATAGT-CCATTATTTTTACATTCTTTACAATTTAGTACTTAGAGTAGCATATCTAAT
452 TTTATTGGATAGTCCCA-T-TTTTTACATTATTTGCAATTTAGTCCTTAGAGTAGCATATCTAAT
* * * **
50354976 TTTCTTGCAATATTTTATTATTATGAATTATCGTACTATAAAATTGTCTTAGTAGCCACTTA-AT
515 TTTCTTGCAATATTTTCTTGTTATGAATTGTCGTACTATAAAATTGTAGTAGTAGCCACTTAGA-
* * * * * * * *
50355040 CTCAATTATATATGCTAGTTATTGCGCAATCGCCATCTACTTTGGGTTTGACCCCTTGAAATACT
579 CTCTATTGTGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTT-AACCCTTGGAATACT
* * * *
50355105 TTGTGTTCCATCGGAACTATAAATATTACAATTGACCTATACGCTTACAGTAAAATC-GAACTTT
643 TTGTGTTCCATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAG-GCTTT
* * * * *
50355169 AAAAAATTGTTTTATAGGTTTGTTGTTTTCATGCGCACATGCGAAGCTGGTCAACTACATCGTGT
707 AAAAAATTGTTTTATAAGTTTGTT-TTTTAATGCGCACATGCGAAGCCGGTCAACTACCTCATGT
* * * * * *
50355234 TTATTA-TCCTGATAGACTCCATGTGTTG-TCATAGTCGACCTAT-AGTCTTACACAATATACCC
771 TTACTATTCC-GATGGACTCCATATGCTGCT-ATAATCGAGCTATGA-TCTTACACAATATACCC
* * * * * *
50355296 CAAGTTTAACGTCCTAGCGGATTACTCCGTGCTTACTGTCCCGGCAGACTATACTAGTTGTCATA
833 CATGTTTAACGTCCTGGCGGACTACTCCGTGCTTACTGTCCCGGCAAACTATACCAGTTGTCTTA
* * *
50355361 ATTGAGACATGGTCTTA
898 GTCGAGCCATGGTCTTA
50355378 AGTTTTCT
1 AGTTTTCT
50355386 TCTTTGTAAC
Statistics
Matches: 3067, Mismatches: 513, Indels: 288
0.79 0.13 0.07
Matches are distributed among these distances:
897 25 0.01
898 1 0.00
900 1 0.00
901 1 0.00
903 1 0.00
907 1 0.00
909 1 0.00
910 1 0.00
914 6 0.00
915 278 0.09
916 122 0.04
917 499 0.16
918 681 0.22
919 87 0.03
920 154 0.05
921 3 0.00
922 2 0.00
923 4 0.00
924 1 0.00
926 1 0.00
927 1 0.00
928 3 0.00
929 3 0.00
930 2 0.00
931 6 0.00
933 45 0.01
934 20 0.01
935 2 0.00
936 4 0.00
937 110 0.04
938 52 0.02
939 10 0.00
940 165 0.05
941 3 0.00
942 1 0.00
943 2 0.00
944 89 0.03
945 533 0.17
946 131 0.04
947 8 0.00
948 2 0.00
949 1 0.00
950 1 0.00
952 2 0.00
953 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (914 bp):
AGTTTTCTGCTCTTTAAGTTTTCTTGCATAAAAATCTCAACTTTCACATTTTTCTCAAGCTTTAC
TTTAATGACTGCTTTGTTTTCCATTTCCATGTCTATTTCTTTTACTTTGAGCATGAGTAGTTAAA
CCTAAAAGAAGGTTGGTTGATGGAGATATGGGTAAACTAAAACCTTTGGACAAAAGAATAAATCG
AATAGACCTTAGAACTTAGGTAGTGACGCCCTAAGGGAATATCTAGGCAAGTGAGACCAAAAGGT
AATCTTGTCATGCACCTGTTCATTAGTCCCAATTAACTAGTGAGATCGAAAGATAAATCGTAGAT
AATTCGTCTAAGTCGATAAAATTGAGATTGAAAGATAAAATGGAGCCACTTAGTAATTTACACGA
TTTAAGTCCCTTGTTTGAGGATCGGTGAACCACATCGAAGTCAACCAACCACCATTAGTTATTTA
TTGGATAGTCCCATTTTTTACATTATTTGCAATTTAGTCCTTAGAGTAGCATATCTAATTTTCTT
GCAATATTTTCTTGTTATGAATTGTCGTACTATAAAATTGTAGTAGTAGCCACTTAGACTCTATT
GTGTATGCTAGTTATTGCTCAATCACCATCTCCTTTGGGTTTAACCCTTGGAATACTTTGTGTTC
CATCGGAACTATAAATATTACAAATGACCTATACGCTTGCAGTAAAACCAGGCTTTAAAAAATTG
TTTTATAAGTTTGTTTTTTAATGCGCACATGCGAAGCCGGTCAACTACCTCATGTTTACTATTCC
GATGGACTCCATATGCTGCTATAATCGAGCTATGATCTTACACAATATACCCCATGTTTAACGTC
CTGGCGGACTACTCCGTGCTTACTGTCCCGGCAAACTATACCAGTTGTCTTAGTCGAGCCATGGT
CTTA
Found at i:50364023 original size:18 final size:18
Alignment explanation
Indices: 50364007--50364043 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
50363997 TTATTCTCAG
50364007 TTCCATCTTCGTTCTCAAC
1 TTCC-TCTTCGTTCTCAAC
*
50364026 TTCCTCTTCGTTATCAAC
1 TTCCTCTTCGTTCTCAAC
50364044 CATAGTTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.16, C:0.35, G:0.05, T:0.43
Consensus pattern (18 bp):
TTCCTCTTCGTTCTCAAC
Found at i:50366496 original size:10 final size:11
Alignment explanation
Indices: 50366456--50366514 Score: 63
Period size: 10 Copynumber: 5.6 Consensus size: 11
50366446 GATAAATATT
50366456 ATATTAATTTA
1 ATATTAATTTA
*
50366467 ATAAT-ATTTA
1 ATATTAATTTA
50366477 ATATTAAATTTA
1 ATATT-AATTTA
50366489 AT-TTAA-TT-
1 ATATTAATTTA
50366497 ATATTAATTTA
1 ATATTAATTTA
*
50366508 AAATTAA
1 ATATTAA
50366515 AGTGATTAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
8 2 0.05
9 6 0.15
10 13 0.32
11 12 0.30
12 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATATTAATTTA
Found at i:50366503 original size:26 final size:26
Alignment explanation
Indices: 50366450--50366514 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
50366440 ATTGTAGATA
*
50366450 AATATTATATTAATTTAATAATATTT
1 AATATTAAATTAATTTAATAATATTT
*
50366476 AATATTAAATTTAATTTAATTATA-TT
1 AATATTAAA-TTAATTTAATAATATTT
50366502 AAT-TTAAAATTAA
1 AATATT-AAATTAA
50366515 AGTGATTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 6 0.17
26 16 0.46
27 13 0.37
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
AATATTAAATTAATTTAATAATATTT
Found at i:50366669 original size:25 final size:26
Alignment explanation
Indices: 50366619--50366669 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
50366609 AGTTGTAGAG
50366619 AGAAAATTCTCTAGAGAAATTATTTT
1 AGAAAATTCTCTAGAGAAATTATTTT
* * *
50366645 AGAAAATT-TTTAGAGATATTTTTTT
1 AGAAAATTCTCTAGAGAAATTATTTT
50366670 TTATTTATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.39, C:0.04, G:0.12, T:0.45
Consensus pattern (26 bp):
AGAAAATTCTCTAGAGAAATTATTTT
Found at i:50372350 original size:19 final size:20
Alignment explanation
Indices: 50372318--50372355 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
50372308 TTATATTTAT
50372318 ATAAAATTTCAAAA-AAAAC
1 ATAAAATTTCAAAATAAAAC
50372337 ATAAAA-TTCTAAAATAAAA
1 ATAAAATTTC-AAAATAAAA
50372356 AAAACTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 10 0.59
20 4 0.24
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (20 bp):
ATAAAATTTCAAAATAAAAC
Found at i:50372798 original size:16 final size:16
Alignment explanation
Indices: 50372773--50372812 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
50372763 TTCGTTCGCT
*
50372773 GTAATAGAATAGATGC
1 GTAATAGAATAGAGGC
*
50372789 GTAATGGAATAGAGGC
1 GTAATAGAATAGAGGC
50372805 GTAATAGA
1 GTAATAGA
50372813 TAATTCTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.05, G:0.30, T:0.23
Consensus pattern (16 bp):
GTAATAGAATAGAGGC
Found at i:50372885 original size:44 final size:47
Alignment explanation
Indices: 50372789--50372886 Score: 123
Period size: 44 Copynumber: 2.2 Consensus size: 47
50372779 GAATAGATGC
* * * *
50372789 GTAATGGAATAGAGGCGTAATAGATAATTCTTTTGTTTGGTTGAATA
1 GTAATAGAATAGAGGCGTAATAGATAACTATTATGTTTGGTTGAATA
*
50372836 G-AATAGAATAGAGGTGTAATAG-T-ACTATTATGTTTGGTTGAAT-
1 GTAATAGAATAGAGGCGTAATAGATAACTATTATGTTTGGTTGAATA
50372879 GTAATAGA
1 GTAATAGA
50372887 GCTGTAATAG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.02
44 23 0.51
45 1 0.02
46 19 0.42
47 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.37
Consensus pattern (47 bp):
GTAATAGAATAGAGGCGTAATAGATAACTATTATGTTTGGTTGAATA
Found at i:50373065 original size:17 final size:17
Alignment explanation
Indices: 50373043--50373076 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
50373033 TTATTATTAA
50373043 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
50373060 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
50373077 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:50373083 original size:17 final size:17
Alignment explanation
Indices: 50373046--50373097 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
50373036 TTATTAAATA
*
50373046 TAATTTAATAAAATAT-A
1 TAATTTAATAAAAT-TCT
50373063 TAATTTAATAAAATTCT
1 TAATTTAATAAAATTCT
50373080 TAA--TAATAAATATTCT
1 TAATTTAATAAA-ATTCT
50373096 TA
1 TA
50373098 TATGGATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
15 7 0.22
16 8 0.25
17 17 0.53
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTTAATAAAATTCT
Found at i:50373088 original size:15 final size:16
Alignment explanation
Indices: 50373068--50373097 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
50373058 ATATATAATT
50373068 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
50373083 TAATAAATATTCTTA
1 TAATAAATATTCTTA
50373098 TATGGATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:50373239 original size:61 final size:60
Alignment explanation
Indices: 50373172--50373358 Score: 183
Period size: 61 Copynumber: 3.1 Consensus size: 60
50373162 ATATAATTTA
*
50373172 ATAAAATTCTTAATAATAAATATTATTATATGAATTTAATAAAATCATAATATGTAATACT
1 ATAAAATTATTAATAATAAATATTATTATATGAATTTAATAAAATCATAATAT-TAATACT
** * *
50373233 ATAAAATATAGTT--TAATTAGTTTTTATTAAATAT-AATTTAATAAAA--AT-ATA-TAAT-TT
1 ATAAAAT-TA-TTAATAA-TAAATATTATT--ATATGAATTTAATAAAATCATAATATTAATACT
* *
50373290 AATAAAATTATTAATAATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACT
1 -ATAAAATTATTAATAATAAATATTATTATATGAATTTAATAAAATCATAATAT-TAATACT
50373352 ATAAAAT
1 ATAAAAT
50373359 ATAATTTAAT
Statistics
Matches: 100, Mismatches: 11, Indels: 30
0.71 0.08 0.21
Matches are distributed among these distances:
55 4 0.04
56 13 0.13
57 10 0.10
58 16 0.16
59 3 0.03
60 3 0.03
61 23 0.23
62 10 0.10
63 14 0.14
64 4 0.04
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (60 bp):
ATAAAATTATTAATAATAAATATTATTATATGAATTTAATAAAATCATAATATTAATACT
Found at i:50373241 original size:119 final size:119
Alignment explanation
Indices: 50373131--50373439 Score: 341
Period size: 119 Copynumber: 2.7 Consensus size: 119
50373121 ATATAATACT
* ** *
50373131 ATAAAATATAATTTAAA-ATAA-TTATTATTAA-ATATAATTTAATAAAATTCTTAATAATAAAT
1 ATAAAATATAA-TTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATAATAAAT
* *
50373193 ATTATTATATGAATTTAATAAAATCATAATATGTAATACTATAAAATATAGTTTA
65 ATTATTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAGTATA
* ** * *
50373248 ATTAGTTTTTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATAATAAATA
1 ATAAAATATAATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATAATAAATA
* * * *
50373313 TTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTA
66 TTATTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAGTATA
* ** * * *
50373367 ATTAGTTTTTATTAAATATAATTTAATAAAAAT-T-TAA--T-A-AAAATT-TTAGTAATAAATA
1 ATAAAATATAATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATAATAAATA
*
50373425 TTCTTATATGAATTT
66 TTATTATATGAATTT
50373440 GTATAATTTA
Statistics
Matches: 175, Mismatches: 14, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
112 27 0.15
113 6 0.03
114 1 0.01
115 1 0.01
116 5 0.03
117 13 0.07
118 8 0.05
119 114 0.65
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (119 bp):
ATAAAATATAATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATAATAAATA
TTATTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAGTATA
Found at i:50373280 original size:102 final size:102
Alignment explanation
Indices: 50373060--50373278 Score: 359
Period size: 102 Copynumber: 2.2 Consensus size: 102
50373050 TTAATAAAAT
* * *
50373060 ATATAATTTAATAAAATTCTTAATAATAAATATTCTTATATGGATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATAATAAATATTATTATATGAATTTAATAAAATCATAATATAT
50373125 AATACTATAAAATATAATTTAAAATAATTATTATTAA
66 AATACTATAAAATATAATTTAAAATAATTATTATTAA
*
50373162 ATATAATTTAATAAAATTCTTAATAATAAATATTATTATATGAATTTAATAAAATCATAATATGT
1 ATATAATTTAATAAAATTCTTAATAATAAATATTATTATATGAATTTAATAAAATCATAATATAT
* * * *
50373227 AATACTATAAAATATAGTTT-AATTAGTTTTTATTAA
66 AATACTATAAAATATAATTTAAAATAATTATTATTAA
50373263 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
50373279 ATATATAATT
Statistics
Matches: 109, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
101 29 0.27
102 80 0.73
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (102 bp):
ATATAATTTAATAAAATTCTTAATAATAAATATTATTATATGAATTTAATAAAATCATAATATAT
AATACTATAAAATATAATTTAAAATAATTATTATTAA
Found at i:50373402 original size:25 final size:25
Alignment explanation
Indices: 50373355--50373407 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
50373345 TAATACTATA
* *** *
50373355 AAATATAATTTAATTAGTTTTTATT
1 AAATATAATTTAATAAAAATTTAAT
50373380 AAATATAATTTAATAAAAATTTAAT
1 AAATATAATTTAATAAAAATTTAAT
50373405 AAA
1 AAA
50373408 AATTTTAGTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
AAATATAATTTAATAAAAATTTAAT
Found at i:50373405 original size:63 final size:63
Alignment explanation
Indices: 50373199--50373397 Score: 204
Period size: 61 Copynumber: 3.3 Consensus size: 63
50373189 AAATATTATT
* *
50373199 ATATGAATTTAATAAAATCATAATATGTAATACTATAAAATATAGTTTAATTAGTTTTTATTAA
1 ATAT-AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAATTAGTTTTTATTAA
* * * *
50373263 ATATAATTTAAT--AA--A-AATATATAAT-TTAATAAAATTATTAATAATAAATA-TTCTTA-T
1 ATATAATTTAATAAAATCATAATATATAATACT-ATAAAA-TA-TAAT-TTAATTAGTTTTTATT
50373320 --
62 AA
* *
50373320 AT-GAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAATTAGTTTTTATTAA
1 ATATAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAATTAGTTTTTATTAA
50373382 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
50373398 ATTTAATAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 31
0.70 0.09 0.21
Matches are distributed among these distances:
56 7 0.07
57 3 0.03
58 22 0.21
59 13 0.12
60 12 0.11
61 23 0.22
62 3 0.03
63 19 0.18
64 4 0.04
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (63 bp):
ATATAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAATTAGTTTTTATTAA
Found at i:50373414 original size:12 final size:11
Alignment explanation
Indices: 50373386--50373412 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
50373376 TATTAAATAT
50373386 AATTTAATAAA
1 AATTTAATAAA
50373397 AATTTAATAAA
1 AATTTAATAAA
50373408 AATTT
1 AATTT
50373413 TAGTAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AATTTAATAAA
Found at i:50373571 original size:15 final size:15
Alignment explanation
Indices: 50373528--50373581 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
50373518 TACGAATTTG
50373528 TATAATTTAA-AATA
1 TATAATTTAATAATA
* *
50373542 -ATTA-TTATTAA-A
1 TATAATTTAATAATA
50373554 TATAATTTAATAATA
1 TATAATTTAATAATA
*
50373569 TATAATTTTATAA
1 TATAATTTAATAA
50373582 AATTCTTACT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
12 4 0.13
13 8 0.26
14 6 0.19
15 13 0.42
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TATAATTTAATAATA
Found at i:50373704 original size:91 final size:91
Alignment explanation
Indices: 50373397--50373978 Score: 953
Period size: 91 Copynumber: 6.5 Consensus size: 91
50373387 ATTTAATAAA
* * * *
50373397 AATTTAATAAAAATTTTAGTAATAAATATTCTTATATGAATTTGTATAATTTAAAATAATTATTA
1 AATTTCATAAAATTCTTAATAATAAATATTCTTATATGAATTTGTATAATTTAAAATAATTATTA
50373462 TTAAATA-AA-TT--TAATAATATAT
66 TTAAATATAATTTAATAATAATATAT
* * *
50373484 AATTTCATAAAATTCTTACTAATAAATTTTCTTATACGAATTTGTATAATTTAAAATAATTATTA
1 AATTTCATAAAATTCTTAATAATAAATATTCTTATATGAATTTGTATAATTTAAAATAATTATTA
50373549 TTAAATATAA-TT--TAATAATATAT
66 TTAAATATAATTTAATAATAATATAT
* * * * *
50373572 AATTTTATAAAATTCTTACTAATAAATTTTCTTATACGAATTTGTATAATTTAAAATAATTAGTA
1 AATTTCATAAAATTCTTAATAATAAATATTCTTATATGAATTTGTATAATTTAAAATAATTATTA
50373637 TTAAATATAATTTAATAATAATATAT
66 TTAAATATAATTTAATAATAATATAT
* *
50373663 AATTTCATAAAATTCTTAATAGTAAATATTCTTATATGAATTTGTACAATTTAAAATAATTATTA
1 AATTTCATAAAATTCTTAATAATAAATATTCTTATATGAATTTGTATAATTTAAAATAATTATTA
50373728 TTAAATATAATTTAATAATAATATAT
66 TTAAATATAATTTAATAATAATATAT
* *
50373754 AATTTCATAAAATTCTTAATAGTAAATATTCTTATATGAATTTGTACAATTTAAAATAATTATTA
1 AATTTCATAAAATTCTTAATAATAAATATTCTTATATGAATTTGTATAATTTAAAATAATTATTA
50373819 TTAAATATAATTTAATAATAATATAT
66 TTAAATATAATTTAATAATAATATAT
*
50373845 AATTTCATAAAATTCTTAATAGTAAATATTCTTATATGAATTTGTATAATTTAAAATAATTATTA
1 AATTTCATAAAATTCTTAATAATAAATATTCTTATATGAATTTGTATAATTTAAAATAATTATTA
50373910 TTAAATATAATTTAATAATAATATAT
66 TTAAATATAATTTAATAATAATATAT
*
50373936 AATTTCATAAAATTCTTACTAATAAATATTCTTATATGAATTT
1 AATTTCATAAAATTCTTAATAATAAATATTCTTATATGAATTT
50373979 ACTAAAATCA
Statistics
Matches: 473, Mismatches: 18, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
87 66 0.14
88 88 0.19
89 2 0.00
91 317 0.67
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (91 bp):
AATTTCATAAAATTCTTAATAATAAATATTCTTATATGAATTTGTATAATTTAAAATAATTATTA
TTAAATATAATTTAATAATAATATAT
Found at i:50374519 original size:15 final size:15
Alignment explanation
Indices: 50374499--50374531 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
50374489 AACGTAAATT
50374499 GAATATAAACATACA
1 GAATATAAACATACA
50374514 GAATATAAACATACA
1 GAATATAAACATACA
50374529 GAA
1 GAA
50374532 ACCATTTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.61, C:0.12, G:0.09, T:0.18
Consensus pattern (15 bp):
GAATATAAACATACA
Found at i:50390018 original size:6 final size:6
Alignment explanation
Indices: 50389991--50390068 Score: 50
Period size: 6 Copynumber: 12.5 Consensus size: 6
50389981 TGTTTATTTG
* * * * * *
50389991 TTTTCT TTTTAA TTTTAA TTTTATT TTTTAT GTTTAT GTTTAT TTTTCT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT
*
50390040 TTTTAAT TGTTT-T GTTTTAG TTTTAT TTT
1 TTTT-AT T-TTTAT -TTTTAT TTTTAT TTT
50390069 CTTGTACTTC
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
6 47 0.81
7 8 0.14
8 3 0.05
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:50390026 original size:25 final size:25
Alignment explanation
Indices: 50390002--50390068 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
50389992 TTTCTTTTTA
*
50390002 ATTTTAATTTTATTTTTTA-TGTTT
1 ATTTTAATTTTATTTTTAATTGTTT
* *
50390026 ATGTTTATTTTTCTTTTTAATTGTTTT
1 AT-TTTAATTTTATTTTTAATTG-TTT
* *
50390053 GTTTTAGTTTTATTTT
1 ATTTTAATTTTATTTT
50390069 CTTGTACTTC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 2 0.06
25 14 0.41
26 14 0.41
27 4 0.12
ACGTcount: A:0.16, C:0.01, G:0.07, T:0.75
Consensus pattern (25 bp):
ATTTTAATTTTATTTTTAATTGTTT
Found at i:50392562 original size:13 final size:13
Alignment explanation
Indices: 50392544--50392570 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50392534 TTAATCAACA
50392544 TAAAGTCAGTTGT
1 TAAAGTCAGTTGT
50392557 TAAAGTCAGTTGT
1 TAAAGTCAGTTGT
50392570 T
1 T
50392571 CTTACTCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (13 bp):
TAAAGTCAGTTGT
Found at i:50396510 original size:42 final size:42
Alignment explanation
Indices: 50396422--50396517 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
50396412 TCAGATGTGG
* * *
50396422 TCTTACATGTAATCAAATAACGATGCCATTGTCCAGATAGGG
1 TCTTACATGTAATCAAATAACGATGCCAATGTCCAGACAGGA
* *
50396464 TCTTACATGTAATCATAT-ACGATGCCAATGTCCTAGACATGA
1 TCTTACATGTAATCAAATAACGATGCCAATGTCC-AGACAGGA
*
50396506 TCTTACACGTAA
1 TCTTACATGTAA
50396518 ATCTCAAATC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 14 0.30
42 33 0.70
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (42 bp):
TCTTACATGTAATCAAATAACGATGCCAATGTCCAGACAGGA
Found at i:50398346 original size:21 final size:20
Alignment explanation
Indices: 50398296--50398351 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 20
50398286 TCTTTGCAAA
*
50398296 ATAAGAGTATCGATAATTATT
1 ATAA-AGTATCGATAATTATG
* * *
50398317 TTAAGGTATCGATACTTTATG
1 ATAAAGTATCGATA-ATTATG
50398338 ATAAAGTAT-GATAA
1 ATAAAGTATCGATAA
50398352 AGTATCAATA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (20 bp):
ATAAAGTATCGATAATTATG
Found at i:50413830 original size:35 final size:35
Alignment explanation
Indices: 50413786--50413853 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
50413776 AAGATAATTA
50413786 AAATTTAAAATAAAGTAGCACTTATCGACATTTTT
1 AAATTTAAAATAAAGTAGCACTTATCGACATTTTT
50413821 AAATTTAAAATAAAGTAGCACTTATCGACATTT
1 AAATTTAAAATAAAGTAGCACTTATCGACATTT
50413854 CCCCAATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (35 bp):
AAATTTAAAATAAAGTAGCACTTATCGACATTTTT
Found at i:50417028 original size:19 final size:19
Alignment explanation
Indices: 50417000--50417036 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50416990 GACAGATTTC
*
50417000 TTTTGATTTTTTGATTTTA
1 TTTTGATTTTTTCATTTTA
*
50417019 TTTTGTTTTTTTCATTTT
1 TTTTGATTTTTTCATTTT
50417037 CGGCTATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.03, G:0.08, T:0.78
Consensus pattern (19 bp):
TTTTGATTTTTTCATTTTA
Found at i:50422543 original size:6 final size:6
Alignment explanation
Indices: 50422504--50422542 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
50422494 ATCCAAAAAA
* *
50422504 AAAATC AAAATC AAAATC AAAGTC AAAATG AAAAT- AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
50422543 AAGAGAGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.69, C:0.10, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:50424940 original size:129 final size:129
Alignment explanation
Indices: 50424732--50425288 Score: 895
Period size: 129 Copynumber: 4.3 Consensus size: 129
50424722 GCTCCCTGAC
*
50424732 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCAAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
* * *
50424797 GACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGTCACAAGTCCTATATCCCTGGC
66 GACGGAGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGT
*
50424861 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGTAGATCAAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
** *
50424926 GATAGAGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
66 GACGGAGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGT
*
50424990 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATC-AA
* * *
50425055 AG-TGGCA-AATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTAG
65 AGACGG-AGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGG
50425118 T
129 T
* *
50425119 CAGCAGTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCAATAGTGGAGTAGATCAAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
* * * *
50425183 GACGGCGAATCTTTTCTTCAAGTGTAAGGAAGCAAATTTAAGCCACAAGTCCTATATTCCTGGT
66 GACGGAGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGT
* *
50425247 CAGCAGTGGAATAGGTTGGGAAATTACAGATCCTCTCTCCCT
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCT
50425289 GAAGTTGTAG
Statistics
Matches: 397, Mismatches: 26, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
127 4 0.01
128 112 0.28
129 276 0.70
130 5 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (129 bp):
CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
GACGGAGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGT
Found at i:50425272 original size:257 final size:258
Alignment explanation
Indices: 50424732--50425288 Score: 929
Period size: 257 Copynumber: 2.2 Consensus size: 258
50424722 GCTCCCTGAC
*
50424732 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTGAGCAATAGCGGAGCAGATCAAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
* * * *
50424797 GACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGTCACAAGTCCTATATCCCTGGCC
66 GACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTAGCC
50424862 AGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGTAGATCAAAG
131 AGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGTAGATCAAAG
* * *
50424927 ATAGAGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATATCCCTGGT
196 ACAGAGAATCTTATCTTCAAGTGTAAGGAAGCAAATTTAAGCCACAAGTCCTATATCCCTGGT
*
50424990 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAA
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATC-AA
* *
50425055 AG-TGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTAGT
65 AGACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTAGC
*
50425119 CAGCAGTGGAATAGGTT-GGAAATTACAGATCTTGTCTCCCTAAGCAATAGTGGAGTAGATCAAA
130 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGTAGATCAAA
* * * *
50425183 GACGGCGAATCTTTTCTTCAAGTGTAAGGAAGCAAATTTAAGCCACAAGTCCTATATTCCTGGT
195 GACAGAGAATCTTATCTTCAAGTGTAAGGAAGCAAATTTAAGCCACAAGTCCTATATCCCTGGT
* *
50425247 CAGCAGTGGAATAGGTTGGGAAATTACAGATCCTCTCTCCCT
1 CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCT
50425289 GAAGTTGTAG
Statistics
Matches: 280, Mismatches: 18, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
257 143 0.51
258 133 0.47
259 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (258 bp):
CAGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGCAGATCAAA
GACGGCAAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTAGCC
AGCAGTGGAATAGGTTGGGAAATTACAGATCTTGTCTCCCTAAGCAATAGCGGAGTAGATCAAAG
ACAGAGAATCTTATCTTCAAGTGTAAGGAAGCAAATTTAAGCCACAAGTCCTATATCCCTGGT
Found at i:50425411 original size:44 final size:44
Alignment explanation
Indices: 50425358--50425480 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
50425348 TGGATCGCAT
* * *
50425358 CAAGTCTTATCTCCGTGAGGTTGCAATGGAGCAGACTG-AGAAAA
1 CAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACCGAAG-AAA
* * ** * * *
50425402 CAAGTCTTATCCCCCTGAAGTCACAGTGGGGTAGACCGAAGAAG
1 CAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACCGAAGAAA
*
50425446 CAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
1 CAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
50425481 TTGAAGTCGA
Statistics
Matches: 61, Mismatches: 17, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
44 59 0.97
45 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (44 bp):
CAAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACCGAAGAAA
Found at i:50425501 original size:44 final size:44
Alignment explanation
Indices: 50425448--50425569 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 44
50425438 CGAAGAAGCA
* * *
50425448 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCGAT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGAT
* * *
50425492 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGT-AAT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGAT
* ** * *
50425535 AGATCTTATCTCTTTGAAGTTACAGTAGAGCAGAT
1 A-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
50425570 CGCATCAAGT
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 3 0.05
44 61 0.95
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (44 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGAT
Found at i:50427029 original size:11 final size:11
Alignment explanation
Indices: 50427013--50427038 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50427003 TTTGATTATT
50427013 ATATTTTTAAA
1 ATATTTTTAAA
50427024 ATATTTTTAAA
1 ATATTTTTAAA
50427035 ATAT
1 ATAT
50427039 GACAATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
ATATTTTTAAA
Found at i:50433597 original size:22 final size:22
Alignment explanation
Indices: 50433545--50433618 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
50433535 CAGCAAATTT
* *
50433545 GCCAGAAACCAGAATGGCTA-AGA
1 GCCATAAA-CAGAATAGCTACA-A
* * *
50433568 GCCGTAAACAGGATAGCTATAA
1 GCCATAAACAGAATAGCTACAA
* *
50433590 GCTATAAACAGAATGGCTACAA
1 GCCATAAACAGAATAGCTACAA
50433612 GCCATAA
1 GCCATAA
50433619 GTACAGTATT
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
22 33 0.82
23 7 0.17
ACGTcount: A:0.43, C:0.20, G:0.22, T:0.15
Consensus pattern (22 bp):
GCCATAAACAGAATAGCTACAA
Found at i:50433671 original size:32 final size:32
Alignment explanation
Indices: 50433610--50433717 Score: 137
Period size: 32 Copynumber: 3.4 Consensus size: 32
50433600 GAATGGCTAC
* * *
50433610 AAGCCATAAGTA-CAGTATTATGATTGGCACA
1 AAGCCATCAGTAGTAGTAATATGATTGGCACA
*
50433641 AAGCCATCAGTAGTAGTAATATGATCGGCACA
1 AAGCCATCAGTAGTAGTAATATGATTGGCACA
* * *
50433673 CAGCCATCAGTAATGGTAATATGATTGGCACA
1 AAGCCATCAGTAGTAGTAATATGATTGGCACA
*
50433705 AAGTCATCAGTAG
1 AAGCCATCAGTAG
50433718 CATCGCAGCA
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
31 11 0.17
32 54 0.83
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (32 bp):
AAGCCATCAGTAGTAGTAATATGATTGGCACA
Found at i:50433753 original size:26 final size:26
Alignment explanation
Indices: 50433723--50433772 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
50433713 AGTAGCATCG
*
50433723 CAGCAAGGCTGCCAGTAACAGTATCA
1 CAGCAAAGCTGCCAGTAACAGTATCA
*
50433749 CAGCAAAGCTGCCTGTAACAGTAT
1 CAGCAAAGCTGCCAGTAACAGTAT
50433773 ATGTGGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.18
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAACAGTATCA
Found at i:50433793 original size:27 final size:26
Alignment explanation
Indices: 50433763--50433824 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
50433753 AAAGCTGCCT
50433763 GTAACAGTATATGTGGCCA-AGCCACCA
1 GTAACAGTAT-TGTGG-CAGAGCCACCA
*
50433790 GTAATAGTGATTGTGGCAGAGCCACCA
1 GTAACAGT-ATTGTGGCAGAGCCACCA
50433817 GT-ACAGTA
1 GTAACAGTA
50433825 CTTCCTCCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 1 0.03
26 6 0.19
27 22 0.71
28 2 0.06
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (26 bp):
GTAACAGTATTGTGGCAGAGCCACCA
Found at i:50433915 original size:24 final size:24
Alignment explanation
Indices: 50433887--50433993 Score: 117
Period size: 24 Copynumber: 4.5 Consensus size: 24
50433877 GCCATGCTAG
*
50433887 AAATCCGTCATACAAATCACAGAA
1 AAATCAGTCATACAAATCACAGAA
* * *
50433911 AAATCTGTCATACCAATCACAGAC
1 AAATCAGTCATACAAATCACAGAA
** *
50433935 AAATCAGTCATTTAAATCACAGAC
1 AAATCAGTCATACAAATCACAGAA
**
50433959 AAATCAGTCATTTAAATCACA-AA
1 AAATCAGTCATACAAATCACAGAA
50433982 CAAATCAGTCAT
1 -AAATCAGTCAT
50433994 TTACATCTCG
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
23 1 0.01
24 73 0.99
ACGTcount: A:0.47, C:0.23, G:0.07, T:0.22
Consensus pattern (24 bp):
AAATCAGTCATACAAATCACAGAA
Found at i:50433994 original size:24 final size:24
Alignment explanation
Indices: 50433900--50434045 Score: 184
Period size: 24 Copynumber: 6.1 Consensus size: 24
50433890 TCCGTCATAC
* * **
50433900 AAATCACAGAAAAATCTGTCATAC
1 AAATCACAGACAAATCAGTCATTT
*
50433924 CAATCACAGACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
50433948 AAATCACAGACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
*
50433972 AAATCACAAACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
* * * *
50433996 ACATCTCGGACAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
* *
50434020 ACATCACAGACAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
50434044 AA
1 AA
50434046 CCTCAAGGGG
Statistics
Matches: 107, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 107 1.00
ACGTcount: A:0.46, C:0.23, G:0.07, T:0.25
Consensus pattern (24 bp):
AAATCACAGACAAATCAGTCATTT
Found at i:50434101 original size:27 final size:27
Alignment explanation
Indices: 50434063--50434206 Score: 132
Period size: 27 Copynumber: 5.4 Consensus size: 27
50434053 GGGTAAAATA
**
50434063 GTCA-TTTACCCTCTAGGATCATTACG
1 GTCATTTTACCCTCTAGGGGCATTACG
50434089 GTCATTTTACCCTAC-AGGGGCATTACG
1 GTCATTTTACCCT-CTAGGGGCATTACG
* * * *
50434116 GTTATTTCACCCTAC-AAGGGCATTAAG
1 GTCATTTTACCCT-CTAGGGGCATTACG
* * * **
50434143 ATCATTTTACCCTATAGGGGCAATATA
1 GTCATTTTACCCTCTAGGGGCATTACG
*
50434170 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTCTAGGGGCATTACG
*
50434197 GTTATTTTAC
1 GTCATTTTAC
50434207 AAATATTGGT
Statistics
Matches: 96, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.04
27 91 0.95
28 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTCTAGGGGCATTACG
Found at i:50434140 original size:54 final size:54
Alignment explanation
Indices: 50434082--50434206 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 54
50434072 CCTCTAGGAT
* * *
50434082 CATTACGGTCATTTTACCCTACAGGGGCATTACGGTTATTTCACCCTACAAGGG
1 CATTACGGTCATTTTACCCTACAGGGGCAATACAGTCATTTCACCCTACAAGGG
* * * * * * *
50434136 CATTAAGATCATTTTACCCTATAGGGGCAATATAGTCATTTTACCCTATAGGGG
1 CATTACGGTCATTTTACCCTACAGGGGCAATACAGTCATTTCACCCTACAAGGG
*
50434190 CATTACGGTTATTTTAC
1 CATTACGGTCATTTTAC
50434207 AAATATTGGT
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (54 bp):
CATTACGGTCATTTTACCCTACAGGGGCAATACAGTCATTTCACCCTACAAGGG
Found at i:50434578 original size:17 final size:17
Alignment explanation
Indices: 50434556--50434597 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
50434546 TTATCTGTGT
50434556 GGCCCACAAGCCCACTA
1 GGCCCACAAGCCCACTA
*
50434573 GGCCCATAAGCCCACTA
1 GGCCCACAAGCCCACTA
50434590 GGCCCACA
1 GGCCCACA
50434598 CAACCCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.29, C:0.45, G:0.19, T:0.07
Consensus pattern (17 bp):
GGCCCACAAGCCCACTA
Found at i:50434594 original size:9 final size:9
Alignment explanation
Indices: 50434556--50434596 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
50434546 TTATCTGTGT
50434556 GGCCCAC-A
1 GGCCCACTA
*
50434564 AGCCCACTA
1 GGCCCACTA
50434573 GGCCCA-TA
1 GGCCCACTA
*
50434581 AGCCCACTA
1 GGCCCACTA
50434590 GGCCCAC
1 GGCCCAC
50434597 ACAACCCATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
8 13 0.48
9 14 0.52
ACGTcount: A:0.27, C:0.46, G:0.20, T:0.07
Consensus pattern (9 bp):
GGCCCACTA
Found at i:50440823 original size:33 final size:33
Alignment explanation
Indices: 50440766--50440880 Score: 149
Period size: 33 Copynumber: 3.4 Consensus size: 33
50440756 ACATTTTCAG
* * * *
50440766 TCCAACCAAACACACTAGATGCTCACACGAGCCAA
1 TCCAACC-AACACACCA-ATGCTCATAAGAGCTAA
**
50440801 TCCCTCCAACACACCAATGCTCATAAGAGCTAA
1 TCCAACCAACACACCAATGCTCATAAGAGCTAA
*
50440834 TCCAACCAACACACCAATACTCATAAGAGCTAA
1 TCCAACCAACACACCAATGCTCATAAGAGCTAA
50440867 TCCAACCAACACAC
1 TCCAACCAACACAC
50440881 TAAACAAAGT
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
33 58 0.82
34 8 0.11
35 5 0.07
ACGTcount: A:0.41, C:0.37, G:0.08, T:0.14
Consensus pattern (33 bp):
TCCAACCAACACACCAATGCTCATAAGAGCTAA
Found at i:50441830 original size:21 final size:21
Alignment explanation
Indices: 50441804--50441845 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
50441794 AAAGTTACCA
50441804 TGTTTTAATTT-CACTTTAATT
1 TGTTTTAATTTCCA-TTTAATT
50441825 TGTTTTAATTTCCATTTAATT
1 TGTTTTAATTTCCATTTAATT
50441846 ATAAAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.24, C:0.10, G:0.05, T:0.62
Consensus pattern (21 bp):
TGTTTTAATTTCCATTTAATT
Found at i:50443981 original size:22 final size:23
Alignment explanation
Indices: 50443956--50444003 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
50443946 AATGATATTT
50443956 ATGTATGGGTA-ATGTGT-ATAGC
1 ATGTAT-GGTATATGTGTAATAGC
*
50443978 ATGTATGTTATATGTGTAATAGC
1 ATGTATGGTATATGTGTAATAGC
50444001 ATG
1 ATG
50444004 ATGTGGTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 3 0.13
22 12 0.52
23 8 0.35
ACGTcount: A:0.29, C:0.04, G:0.27, T:0.40
Consensus pattern (23 bp):
ATGTATGGTATATGTGTAATAGC
Found at i:50456851 original size:26 final size:26
Alignment explanation
Indices: 50456817--50456879 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
50456807 GGAATCAAAC
* * *
50456817 AAAAGAAAAATTAAAATGTAAAAATA
1 AAAATAAAAATAAAAATATAAAAATA
* * *
50456843 AAATTAAAAACAAAAATATTAAAATA
1 AAAATAAAAATAAAAATATAAAAATA
50456869 AAAATAAAAAT
1 AAAATAAAAAT
50456880 GGCTAAATTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.21
Consensus pattern (26 bp):
AAAATAAAAATAAAAATATAAAAATA
Found at i:50456870 original size:20 final size:21
Alignment explanation
Indices: 50456841--50456879 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
50456831 AATGTAAAAA
50456841 TAAAATTAAAAACAAAAATAT
1 TAAAATTAAAAACAAAAATAT
*
50456862 TAAAA-TAAAAATAAAAAT
1 TAAAATTAAAAACAAAAAT
50456880 GGCTAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (21 bp):
TAAAATTAAAAACAAAAATAT
Found at i:50456872 original size:6 final size:6
Alignment explanation
Indices: 50456835--50456879 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
50456825 AATTAAAATG
* *
50456835 TAAAAA TAAAAT TAAAAA CAAAAA TATTAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA TA--AAAA TAAAAA TAAAAA T
50456880 GGCTAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (6 bp):
TAAAAA
Found at i:50470451 original size:38 final size:38
Alignment explanation
Indices: 50470409--50470527 Score: 141
Period size: 38 Copynumber: 3.0 Consensus size: 38
50470399 GCCCATATTT
50470409 GATTAAAAATAAAAAATATATATTTAATATATAATTCG
1 GATTAAAAATAAAAAATATATATTTAATATATAATTCG
* ** * *
50470447 GATTAAAAGTCCAAAATATATATTTAATAAAAAGTATATT-T
1 GATTAAAAATAAAAAATATATATTTAAT--ATA-TA-ATTCG
50470488 GATTAAAAATAAAAATATATATATTTAATATATAATTCG
1 GATTAAAAATAAAAA-ATATATATTTAATATATAATTCG
50470527 G
1 G
50470528 GCTGGGCCAA
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
38 28 0.43
39 3 0.05
40 4 0.06
41 14 0.22
42 16 0.25
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37
Consensus pattern (38 bp):
GATTAAAAATAAAAAATATATATTTAATATATAATTCG
Found at i:50472481 original size:69 final size:69
Alignment explanation
Indices: 50472395--50472534 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
50472385 TGTCTAGGTT
50472395 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
1 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
50472460 GCAA
66 GCAA
*
50472464 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGATAGAGT
1 ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
50472529 GCAA
66 GCAA
50472533 AT
1 AT
50472535 TGAATTGTAA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (69 bp):
ATGTAATGATAGCTTATTGAGTGCATTCTAATTTGTTCATTGATGGTCTATTTTTGTGAGAGAGT
GCAA
Found at i:50473420 original size:21 final size:20
Alignment explanation
Indices: 50473364--50473429 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
50473354 ATATTTTTAT
50473364 TTTTTAATAAAAATTTTAAAA
1 TTTTTAAT-AAAATTTTAAAA
** * *
50473385 TTTTTGTTTATAATTTTAATGA
1 TTTTT-AATAAAATTTTAA-AA
50473407 TTTTTAATAAAA-TTTAAAA
1 TTTTTAATAAAATTTTAAAA
50473426 TTTT
1 TTTT
50473430 AAAAAGGTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
19 5 0.14
20 5 0.14
21 18 0.51
22 7 0.20
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTTTAATAAAATTTTAAAA
Found at i:50474151 original size:5 final size:5
Alignment explanation
Indices: 50474141--50474180 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
50474131 AACTTCACAT
50474141 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
50474181 CTAACTAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:50474320 original size:36 final size:36
Alignment explanation
Indices: 50474252--50474320 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
50474242 AATTTAAGGT
*
50474252 TTTATTTATTTCACTAAAAATAATTTTCAAAAATGA
1 TTTATTAATTTCACTAAAAATAATTTTCAAAAATGA
*
50474288 TTTATTAATTT-ACTAGAAAGT-ATTTTCTAAAAA
1 TTTATTAATTTCACTA-AAAATAATTTTC-AAAAA
50474321 AATTAATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 10 0.34
36 19 0.66
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.45
Consensus pattern (36 bp):
TTTATTAATTTCACTAAAAATAATTTTCAAAAATGA
Found at i:50478418 original size:6 final size:7
Alignment explanation
Indices: 50478402--50478427 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
50478392 GGGTTATCTG
50478402 TTTTTAT
1 TTTTTAT
50478409 TTTTTAT
1 TTTTTAT
50478416 TTTTTAT
1 TTTTTAT
50478423 TTTTT
1 TTTTT
50478428 CAAAAAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:50482131 original size:23 final size:23
Alignment explanation
Indices: 50482105--50482180 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
50482095 ATAAGTGCCA
50482105 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
50482128 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
50482151 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
50482174 CACTGAT
1 CACTGAT
50482181 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:50482279 original size:8 final size:8
Alignment explanation
Indices: 50482266--50482294 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
50482256 ACCCGGGACT
50482266 CACTGTAA
1 CACTGTAA
50482274 CACTGTAA
1 CACTGTAA
50482282 CACTGTAA
1 CACTGTAA
50482290 CACTG
1 CACTG
50482295 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:50482425 original size:18 final size:17
Alignment explanation
Indices: 50482399--50482437 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
50482389 ATTTTCCTTC
50482399 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
50482416 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
50482434 CACA
1 CACA
50482438 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:50491498 original size:23 final size:23
Alignment explanation
Indices: 50491472--50491547 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
50491462 ATAAGTGCCA
50491472 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
50491495 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
50491518 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
50491541 CACTGAT
1 CACTGAT
50491548 CAATAACACT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:50491647 original size:8 final size:8
Alignment explanation
Indices: 50491634--50491662 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
50491624 ACCCGGGACT
50491634 CACTGTAA
1 CACTGTAA
50491642 CACTGTAA
1 CACTGTAA
50491650 CACTGTAA
1 CACTGTAA
50491658 CACTG
1 CACTG
50491663 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:50491793 original size:18 final size:17
Alignment explanation
Indices: 50491767--50491805 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
50491757 ATTTTCCTTC
50491767 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
50491784 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
50491802 CACA
1 CACA
50491806 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:50493370 original size:43 final size:43
Alignment explanation
Indices: 50493302--50493425 Score: 203
Period size: 43 Copynumber: 2.9 Consensus size: 43
50493292 ATAGGGAACG
* *
50493302 TGAGAGGGATTCAGACTCCTCTAGTTTTGTTCAGAGGCAAGAA
1 TGAGAGGGATTCGGACCCCTCTAGTTTTGTTCAGAGGCAAGAA
*
50493345 TGAGAGGGATTCGGACCCCTTTAGTTTTGTTCAGAGGCAAGAA
1 TGAGAGGGATTCGGACCCCTCTAGTTTTGTTCAGAGGCAAGAA
* *
50493388 TGAGAGGGATTCGAACCCCTCTAGTTCTGTTCAGAGGC
1 TGAGAGGGATTCGGACCCCTCTAGTTTTGTTCAGAGGC
50493426 CTAAGAAATG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
TGAGAGGGATTCGGACCCCTCTAGTTTTGTTCAGAGGCAAGAA
Found at i:50495915 original size:36 final size:36
Alignment explanation
Indices: 50495856--50495928 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
50495846 CGAGGTAGGG
*
50495856 TATGTGTACCAAATGATTATAATCTAAGGCAGTTGA
1 TATGTGTACCAAATAATTATAATCTAAGGCAGTTGA
* * *
50495892 TATGTGTATCGAATAATTCTAATCTAAGGCAGTTGA
1 TATGTGTACCAAATAATTATAATCTAAGGCAGTTGA
50495928 T
1 T
50495929 TCTGAGAGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (36 bp):
TATGTGTACCAAATAATTATAATCTAAGGCAGTTGA
Found at i:50497331 original size:17 final size:17
Alignment explanation
Indices: 50497309--50497360 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
50497299 ATGGAAACAT
*
50497309 AATCTTCGATGATATGC
1 AATCTTAGATGATATGC
*
50497326 AATCTTAGATATGATATGT
1 AATCTTAG--ATGATATGC
*
50497345 AATCTTAGAAGATATG
1 AATCTTAGATGATATG
50497361 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 14 0.47
19 16 0.53
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (17 bp):
AATCTTAGATGATATGC
Found at i:50497379 original size:22 final size:22
Alignment explanation
Indices: 50497317--50497376 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
50497307 ATAATCTTCG
*
50497317 ATGATATGCAATCTT---AGAT
1 ATGATATGTAATCTTAGAAGAT
50497336 ATGATATGTAATCTTAGAAGAT
1 ATGATATGTAATCTTAGAAGAT
*
50497358 ATGATTTTGTAATCTTAGA
1 ATGA-TATGTAATCTTAGA
50497377 GATTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.40
22 8 0.23
23 13 0.37
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.40
Consensus pattern (22 bp):
ATGATATGTAATCTTAGAAGAT
Found at i:50497386 original size:22 final size:23
Alignment explanation
Indices: 50497342--50497386 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
50497332 AGATATGATA
*
50497342 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
50497365 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
50497387 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:50502314 original size:19 final size:21
Alignment explanation
Indices: 50502290--50502328 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
50502280 GTTTTCTTTT
*
50502290 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
50502309 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
50502329 TTAAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:50507665 original size:36 final size:36
Alignment explanation
Indices: 50507618--50507691 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
50507608 AAGTATATTA
50507618 AAATTTTATATTGATCATGATGGATATCTACTTAAT
1 AAATTTTATATTGATCATGATGGATATCTACTTAAT
50507654 AAATTTTATATTGATCATGATGGATATCTACTTAAT
1 AAATTTTATATTGATCATGATGGATATCTACTTAAT
50507690 AA
1 AA
50507692 GATATTCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (36 bp):
AAATTTTATATTGATCATGATGGATATCTACTTAAT
Found at i:50508281 original size:25 final size:26
Alignment explanation
Indices: 50508253--50508307 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
50508243 AGTTATGAAT
*
50508253 TTAATAT-ATATTTATT-ATTAAAATA
1 TTAATATAAT-TTTATTCAATAAAATA
*
50508278 TTAATATAATTTTTTTCAATAAAATA
1 TTAATATAATTTTATTCAATAAAATA
50508304 TTAA
1 TTAA
50508308 GAATATTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
TTAATATAATTTTATTCAATAAAATA
Done.