Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 170 of 189
Found at i:50508366 original size:19 final size:18
Alignment explanation
Indices: 50508321--50508366 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
50508311 TATTACTCAA
50508321 AATTTAAAA-TTATTATT
1 AATTTAAAATTTATTATT
* *
50508338 AATGTTAAATTTTTTTATT
1 AAT-TTAAAATTTATTATT
50508357 AATTTAAAAT
1 AATTTAAAAT
50508367 CATAATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 3 0.12
18 11 0.46
19 10 0.42
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
AATTTAAAATTTATTATT
Found at i:50508396 original size:21 final size:21
Alignment explanation
Indices: 50508370--50508418 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
50508360 TTAAAATCAT
* *
50508370 AATATTAAATAATTTTATTAA
1 AATATTAAATAATGTTAATAA
*
50508391 AATATTAAATTATGTTAATAA
1 AATATTAAATAATGTTAATAA
*
50508412 ATTATTA
1 AATATTA
50508419 TATTATTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
AATATTAAATAATGTTAATAA
Found at i:50511573 original size:6 final size:6
Alignment explanation
Indices: 50511567--50511627 Score: 86
Period size: 6 Copynumber: 10.2 Consensus size: 6
50511557 ATTATTATTG
* * * *
50511567 TTGTTG TTGTTG TTGTTG TTGTTA TTGTTG TTGTTA TTGTTA TTGTTA
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
50511615 TTGTTA TTGTTA T
1 TTGTTA TTGTTA T
50511628 ATTTCTTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.10, C:0.00, G:0.23, T:0.67
Consensus pattern (6 bp):
TTGTTA
Found at i:50511581 original size:12 final size:12
Alignment explanation
Indices: 50511567--50511627 Score: 95
Period size: 12 Copynumber: 5.1 Consensus size: 12
50511557 ATTATTATTG
*
50511567 TTGTTGTTGTTG
1 TTGTTGTTGTTA
50511579 TTGTTGTTGTTA
1 TTGTTGTTGTTA
50511591 TTGTTGTTGTTA
1 TTGTTGTTGTTA
*
50511603 TTGTTATTGTTA
1 TTGTTGTTGTTA
*
50511615 TTGTTATTGTTA
1 TTGTTGTTGTTA
50511627 T
1 T
50511628 ATTTCTTTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.10, C:0.00, G:0.23, T:0.67
Consensus pattern (12 bp):
TTGTTGTTGTTA
Found at i:50511587 original size:18 final size:18
Alignment explanation
Indices: 50511567--50511627 Score: 95
Period size: 18 Copynumber: 3.4 Consensus size: 18
50511557 ATTATTATTG
* *
50511567 TTGTTGTTGTTGTTGTTG
1 TTGTTATTGTTGTTGTTA
50511585 TTGTTATTGTTGTTGTTA
1 TTGTTATTGTTGTTGTTA
*
50511603 TTGTTATTGTTATTGTTA
1 TTGTTATTGTTGTTGTTA
50511621 TTGTTAT
1 TTGTTAT
50511628 ATTTCTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.10, C:0.00, G:0.23, T:0.67
Consensus pattern (18 bp):
TTGTTATTGTTGTTGTTA
Found at i:50516606 original size:18 final size:19
Alignment explanation
Indices: 50516569--50516606 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
50516559 AAGACTATTA
* *
50516569 AAACATGTCATCTGAGAAT
1 AAACATGTCAGCTAAGAAT
50516588 AAACAT-TCAGCTAAGAAT
1 AAACATGTCAGCTAAGAAT
50516606 A
1 A
50516607 CTATCCTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.47, C:0.16, G:0.13, T:0.24
Consensus pattern (19 bp):
AAACATGTCAGCTAAGAAT
Found at i:50523157 original size:41 final size:41
Alignment explanation
Indices: 50523112--50523256 Score: 220
Period size: 41 Copynumber: 3.5 Consensus size: 41
50523102 GACTTTAAGT
50523112 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
50523153 CTAGCAGGTTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* * *
50523194 CTAGTAGGCTAAGTGCCGGTGAT-TGGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCT-GAATCAGGTTATAAAC
* *
50523235 CTAGCAGGTTAAGTGCCAGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
50523257 ATATGTTAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 1 0.01
41 94 0.99
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:50524321 original size:20 final size:21
Alignment explanation
Indices: 50524296--50524334 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
50524286 ACCGACTGTT
50524296 ATAAAAAAATTAAA-AATGAA
1 ATAAAAAAATTAAATAATGAA
*
50524316 ATAAAAATATTAAATAATG
1 ATAAAAAAATTAAATAATG
50524335 TTAAGAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (21 bp):
ATAAAAAAATTAAATAATGAA
Found at i:50525166 original size:19 final size:19
Alignment explanation
Indices: 50525093--50525338 Score: 101
Period size: 19 Copynumber: 13.2 Consensus size: 19
50525083 ATAAAATCAT
*
50525093 AAAATTATAAAAATCAGA-A
1 AAAATTATAAAAAT-ATATA
50525112 AAAA-TATAAAAATAT-TA
1 AAAATTATAAAAATATATA
*
50525129 AATA-T-TAAAAATAT-T-
1 AAAATTATAAAAATATATA
50525144 AAAATTATAAAAATATATA
1 AAAATTATAAAAATATATA
*
50525163 AAAACTTATAAATAT-TATA
1 AAAA-TTATAAAAATATATA
* *
50525182 AAAA-TAGAAAAATCTA-A
1 AAAATTATAAAAATATATA
* * *
50525199 TAAATCATAAAACT-TATA
1 AAAATTATAAAAATATATA
*
50525217 AAATTTAATAAAAAT-TA-A
1 AAAATT-ATAAAAATATATA
* * *
50525235 AAAATCGTATTAGAAT-TCTTA
1 AAAAT--TATAAAAATAT-ATA
* * *
50525256 AAAAATA-ATAAAATTTGTA
1 AAAATTATA-AAAATATATA
* *
50525275 AAAATTATAAAAAAATATT
1 AAAATTATAAAAATATATA
*
50525294 AAAATTGATATAAACT-TATA
1 AAAATT-ATA-AAAATATATA
* *
50525314 AAAAGTATTAAAAAAATCATA
1 AAAATTA-TAAAAATAT-ATA
50525335 AAAA
1 AAAA
50525339 CTTGAACAAA
Statistics
Matches: 172, Mismatches: 33, Indels: 42
0.70 0.13 0.17
Matches are distributed among these distances:
15 3 0.02
16 11 0.06
17 28 0.16
18 27 0.16
19 62 0.36
20 26 0.15
21 15 0.09
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (19 bp):
AAAATTATAAAAATATATA
Found at i:50525285 original size:9 final size:9
Alignment explanation
Indices: 50525081--50525327 Score: 116
Period size: 9 Copynumber: 27.0 Consensus size: 9
50525071 TAAATTTTTT
50525081 TTAT-AAAA
1 TTATAAAAA
*
50525089 TCAT-AAAA
1 TTATAAAAA
50525097 TTATAAAAA
1 TTATAAAAA
* *
50525106 TCAGAAAAA
1 TTATAAAAA
*
50525115 ATATAAAAA
1 TTATAAAAA
*
50525124 -TAT-TAAA
1 TTATAAAAA
50525131 -TATTAAAAA
1 TTA-TAAAAA
*
50525140 -TATTAAAA
1 TTATAAAAA
50525148 TTATAAAAA
1 TTATAAAAA
50525157 TATATAAAAA
1 T-TATAAAAA
*
50525167 CTTATAAATA
1 -TTATAAAAA
50525177 TTATAAAAA
1 TTATAAAAA
*
50525186 -TAGAAAAA
1 TTATAAAAA
*
50525194 TCTA-ATAAA
1 T-TATAAAAA
* *
50525203 TCATAAAAC
1 TTATAAAAA
*
50525212 TTATAAAAT
1 TTATAAAAA
50525221 TTAATAAAAA
1 TT-ATAAAAA
50525231 TTA-AAAAA
1 TTATAAAAA
* *
50525239 TCGTATTAGAA
1 T--TATAAAAA
*
50525250 TTCTTAAAAAA
1 TT-AT-AAAAA
* *
50525261 TAATAAAAT
1 TTATAAAAA
*
50525270 TTGTAAAAA
1 TTATAAAAA
50525279 TTATAAAAAA
1 TTAT-AAAAA
* *
50525289 ATATTAAAA
1 TTATAAAAA
*
50525298 TTGATATAAAC
1 TT-ATA-AAAA
50525309 TTATAAAAA
1 TTATAAAAA
*
50525318 GTATTAAAAA
1 TTA-TAAAAA
50525328 AATCATAAAA
Statistics
Matches: 180, Mismatches: 40, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
7 5 0.03
8 33 0.18
9 80 0.44
10 48 0.27
11 14 0.08
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:50525315 original size:48 final size:49
Alignment explanation
Indices: 50525160--50525316 Score: 125
Period size: 48 Copynumber: 3.3 Consensus size: 49
50525150 ATAAAAATAT
* *
50525160 ATAAAAACTTAT-AAATATT-ATAAAAA-TAGAAAAAT-CTAAT-AAA-TC
1 ATAAAAACTTATAAAAT-TTAATAAAAATTA-AAAAATAATATTAAAATTC
** *
50525205 AT-AAAACTTATAAAATTTAATAAAAATTAAAAAATCGTATTAGAATTC
1 ATAAAAACTTATAAAATTTAATAAAAATTAAAAAATAATATTAAAATTC
* * * * *
50525253 TTAAAAAATAATAAAATTT-GTAAAAATTATAAAAA-AATATTAAAATTG
1 ATAAAAACTTATAAAATTTAATAAAAATTA-AAAAATAATATTAAAATTC
*
50525301 ATATAAACTTATAAAA
1 ATAAAAACTTATAAAA
50525317 AGTATTAAAA
Statistics
Matches: 89, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.12
45 19 0.21
46 5 0.06
47 2 0.02
48 33 0.37
49 19 0.21
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (49 bp):
ATAAAAACTTATAAAATTTAATAAAAATTAAAAAATAATATTAAAATTC
Found at i:50525316 original size:29 final size:28
Alignment explanation
Indices: 50525254--50525326 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
50525244 TTAGAATTCT
*
50525254 TAAAAAATAATAAAATTTGTAAAAATTA
1 TAAAAAATATTAAAATTTGTAAAAATTA
*
50525282 TAAAAAAATATTAAAA-TTGATATAAACTTA
1 T-AAAAAATATTAAAATTTG-TA-AAAATTA
*
50525312 TAAAAAGTATTAAAA
1 TAAAAAATATTAAAA
50525327 AAATCATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
28 4 0.10
29 28 0.72
30 7 0.18
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (28 bp):
TAAAAAATATTAAAATTTGTAAAAATTA
Found at i:50525810 original size:20 final size:19
Alignment explanation
Indices: 50525787--50525841 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 19
50525777 TTTAAATATG
50525787 TTTTATTAATTTTATAATTT
1 TTTTA-TAATTTTATAATTT
* **
50525807 TTTTATAA-TTTATCAGAT
1 TTTTATAATTTTATAATTT
50525825 TTTTATAATATTTATAA
1 TTTTATAAT-TTTATAA
50525842 GTTTATATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 15 0.52
19 3 0.10
20 11 0.38
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTATAATTTTATAATTT
Found at i:50525817 original size:56 final size:53
Alignment explanation
Indices: 50525740--50525885 Score: 136
Period size: 56 Copynumber: 2.7 Consensus size: 53
50525730 TTTAAATAAT
* * *
50525740 TTTTATGATTTTTATAGAATTTTAATATTTATAATACTTTAAATATGTTT-TATTAA
1 TTTTAT-ATTTTTTTATAATTTTAATATTTATAATA-TTT--ATAAGTTTATATTAA
*
50525796 TTTTATAATTTTTTTATAATTTATCAGATTTTTATAATATTTATAAGTTTATATTAA
1 TTTTAT-ATTTTTTTATAATTT-T-A-ATATTTATAATATTTATAAGTTTATATTAA
* * *
50525853 TTTCATATTTTTTAAT-A-TTTAATATTTTTAATA
1 TTTTATATTTTTTTATAATTTTAATATTTATAATA
50525886 AATTTTTTTC
Statistics
Matches: 77, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
51 10 0.13
52 1 0.01
53 1 0.01
54 2 0.03
55 1 0.01
56 35 0.45
57 12 0.16
58 4 0.05
59 11 0.14
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (53 bp):
TTTTATATTTTTTTATAATTTTAATATTTATAATATTTATAAGTTTATATTAA
Found at i:50525818 original size:18 final size:18
Alignment explanation
Indices: 50525787--50525855 Score: 50
Period size: 18 Copynumber: 3.6 Consensus size: 18
50525777 TTTAAATATG
**
50525787 TTTTATTAATTTTATAATTT
1 TTTTA-TAA-TTTATAAGAT
*
50525807 TTTTATAATTTATCAGAT
1 TTTTATAATTTATAAGAT
50525825 TTTTATAATATTTATAAG-T
1 TTTTAT-A-ATTTATAAGAT
*
50525844 TTATATTAATTT
1 TTTTA-TAATTT
50525856 CATATTTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
18 17 0.41
19 10 0.24
20 14 0.34
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTATAATTTATAAGAT
Found at i:50525853 original size:20 final size:19
Alignment explanation
Indices: 50525786--50525873 Score: 57
Period size: 20 Copynumber: 4.8 Consensus size: 19
50525776 CTTTAAATAT
50525786 GTTTTATTAAT-TTTATAA
1 GTTTTATTAATATTTATAA
* *
50525804 -TTTT-TTTATAATTTATCA
1 GTTTTATTAAT-ATTTATAA
50525822 GATTTT-TATAATATTTATAA
1 G-TTTTAT-TAATATTTATAA
*
50525842 GTTTATATTAAT-TTCAT-A
1 GTTT-TATTAATATTTATAA
50525860 -TTTT-TTAATATTTA
1 GTTTTATTAATATTTA
50525874 ATATTTTTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
15 5 0.09
16 8 0.14
17 7 0.12
18 7 0.12
19 7 0.12
20 18 0.32
21 4 0.07
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.61
Consensus pattern (19 bp):
GTTTTATTAATATTTATAA
Found at i:50525854 original size:38 final size:36
Alignment explanation
Indices: 50525787--50525873 Score: 90
Period size: 38 Copynumber: 2.4 Consensus size: 36
50525777 TTTAAATATG
* *
50525787 TTTTATTAAT-TTTATAATTTTTTTATAATTTATCAGAT
1 TTTTA-TAATATTTATAATTTATATATAA-TT-TCAGAT
*
50525825 TTTTATAATATTTATAAGTTTATAT-TAATTTCATAT
1 TTTTATAATATTTATAA-TTTATATATAATTTCAGAT
50525861 TTTT-TAATATTTA
1 TTTTATAATATTTA
50525874 ATATTTTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
35 9 0.20
36 9 0.20
37 6 0.14
38 15 0.34
39 5 0.11
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (36 bp):
TTTTATAATATTTATAATTTATATATAATTTCAGAT
Found at i:50525890 original size:35 final size:35
Alignment explanation
Indices: 50525787--50525890 Score: 86
Period size: 36 Copynumber: 2.9 Consensus size: 35
50525777 TTTAAATATG
* * *
50525787 TTTTATTAATTTTATAAT-TTTTTTATAATTTATCAGA
1 TTTT-TTAATATT-TAATATTTTTAATAAATT-TCAGA
** * *
50525824 TTTTTATAATATTT-ATAAGTTTATATTAATTTCATA
1 TTTTT-TAATATTTAATATTTTTA-ATAAATTTCAGA
50525860 TTTTTTAATATTTAATATTTTTAATAAATTT
1 TTTTTTAATATTTAATATTTTTAATAAATTT
50525891 TTTTCTAATT
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
35 17 0.32
36 21 0.40
37 15 0.28
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (35 bp):
TTTTTTAATATTTAATATTTTTAATAAATTTCAGA
Found at i:50526953 original size:65 final size:65
Alignment explanation
Indices: 50526839--50526967 Score: 222
Period size: 65 Copynumber: 2.0 Consensus size: 65
50526829 AGTTTATTTT
* * *
50526839 TCAATGCATTTACAATATGGTTTCTTTAATTACATGGCTTTTTTTTGTTTGGTTGCCAAGAAAAA
1 TCAATGCACTTACAATATGGTTTCTTTAATTACATGGCTCTTTTCTGTTTGGTTGCCAAGAAAAA
*
50526904 TCAATGCACTTACAATATGGTTTCTTTGATTACATGGCTCTTTTCTGTTTGGTTGCCAAGAAAA
1 TCAATGCACTTACAATATGGTTTCTTTAATTACATGGCTCTTTTCTGTTTGGTTGCCAAGAAAA
50526968 CAAGGGAACA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.43
Consensus pattern (65 bp):
TCAATGCACTTACAATATGGTTTCTTTAATTACATGGCTCTTTTCTGTTTGGTTGCCAAGAAAAA
Found at i:50527811 original size:6 final size:6
Alignment explanation
Indices: 50527798--50527844 Score: 78
Period size: 6 Copynumber: 8.0 Consensus size: 6
50527788 AATATAATAC
*
50527798 TTAT-T TTATAT TTATAT TTATAT TTATAT TTGTAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT TTATAT
50527845 AACACTACCA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 4 0.10
6 35 0.90
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (6 bp):
TTATAT
Found at i:50531906 original size:20 final size:21
Alignment explanation
Indices: 50531856--50531907 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
50531846 TTATTCGTTC
* *
50531856 AATTAATATTAGATTGAATTTT
1 AATTAA-ATTAGATTGAAATTA
50531878 AA-TATAATT-GATTGAAATTA
1 AATTA-AATTAGATTGAAATTA
50531898 AATTAAATTA
1 AATTAAATTA
50531908 AAAAACTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
20 15 0.60
21 7 0.28
22 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (21 bp):
AATTAAATTAGATTGAAATTA
Found at i:50537435 original size:7 final size:7
Alignment explanation
Indices: 50537423--50537452 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
50537413 TCGTTGAAAC
50537423 ACCACCG
1 ACCACCG
50537430 ACCACCG
1 ACCACCG
50537437 ACCACCG
1 ACCACCG
50537444 ACCACCG
1 ACCACCG
50537451 AC
1 AC
50537453 AGTTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.57, G:0.13, T:0.00
Consensus pattern (7 bp):
ACCACCG
Found at i:50538726 original size:13 final size:13
Alignment explanation
Indices: 50538708--50538736 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
50538698 ATTTAGTATT
50538708 TATATAATAAATA
1 TATATAATAAATA
50538721 TATATAATAAATA
1 TATATAATAAATA
50538734 TAT
1 TAT
50538737 TTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TATATAATAAATA
Found at i:50538780 original size:29 final size:28
Alignment explanation
Indices: 50538744--50538800 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
50538734 TATTTTTTAT
50538744 TTTTTTATTTTAAAGTATTTTTAAAATAC
1 TTTTTTATTTT-AAGTATTTTTAAAATAC
***
50538773 TTTTTTATTTTTTTTATTTTTAAAATAC
1 TTTTTTATTTTAAGTATTTTTAAAATAC
50538801 ATTTCCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (28 bp):
TTTTTTATTTTAAGTATTTTTAAAATAC
Found at i:50543161 original size:44 final size:44
Alignment explanation
Indices: 50543098--50543696 Score: 210
Period size: 44 Copynumber: 13.8 Consensus size: 44
50543088 TCATCATTTT
* * * * * *
50543098 AATCCGCTCCGCTACAACTTCAAGGAGATAGGGTAGGTTTCTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATAGGTTTATTC
* * * *
50543142 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTGGTTTATTT
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATAGGTTTATTC
* * ** * *
50543186 AGTCTGCTCCACTGCAATTTC-AGAGAGATAAG--A-CCTGATGC
1 AATCTGCTCCACTGCAACTTCAAG-GAGATAAGATAGGTTTATTC
* ***
50543227 GATCTGC-CCTACTGCAACTTC-AGAGAGATAAGATCCATCATT-TT-
1 AATCTGCTCC-ACTGCAACTTCAAG-GAGATAAGAT--AGGTTTATTC
* * *
50543271 AATCTGCTCCGCTGCAACTTCAAGGAGATAGGATTGGTTTATTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATAGGTTTATTC
* * * * *
50543315 AATTTGCCCCACTACAACTTCAGGGAGATAAGATTGGTTTATTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATAGGTTTATTC
* * * * * ** * *
50543359 AGTCTGCTCCATTGCAATTTCAGGGAGAGAAG--A-CCTGATGC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATAGGTTTATTC
* * ** ***
50543400 GATCTACTTTACTGCAACTTC-AGAGAGATAAGATCCATCATT-TT-
1 AATCTGCTCCACTGCAACTTCAAG-GAGATAAGAT--AGGTTTATTC
** * * * * * *
50543444 AATCCACTCCGCTGCAACTTTAGGGAGATAGGATTGGTTTCTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATAGGTTTATTC
* * * *
50543488 AATCTGTTCCACTACAACTTCAAAGAGATAAGATTGGTTTATTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATAGGTTTATTC
* * * * * *** *
50543532 AGTCTACTCCGCTGTAACTTCAAGGGAGATGAGACCTGATT-TT-
1 AATCTGCTCCACTGCAACTTCAA-GGAGATAAGATAGGTTTATTC
** * * *
50543575 AATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGG-CT-TT-
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TA--GGTTTATTC
* * * * *** *
50543619 AATTTGCTCCACTGCAACTTTAGGGAGATAAGACTCGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TAGGTTTATTC
* * * *
50543664 AGTCTGCTCCATTGCAACTTCAGGGGGATAAGA
1 AATCTGCTCCACTGCAACTTCAAGGAGATAAGA
50543697 CTTGCTTTCT
Statistics
Matches: 406, Mismatches: 122, Indels: 53
0.70 0.21 0.09
Matches are distributed among these distances:
40 3 0.01
41 54 0.13
42 13 0.03
43 24 0.06
44 259 0.64
45 49 0.12
46 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAAGGAGATAAGATAGGTTTATTC
Found at i:50543282 original size:173 final size:173
Alignment explanation
Indices: 50543052--50543571 Score: 745
Period size: 173 Copynumber: 3.0 Consensus size: 173
50543042 AAAAGTCTGG
* * * * *
50543052 TGCGATATGCTCTATTGCAGCTTCAGAGAGATAATAT-CATCATTTTAATCCGCTCCGCTACAAC
1 TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCGCTGCAAC
* * * *
50543116 TTCAAGGAGATAGGGTAGGTTTCTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTGGTT
66 TTCAAGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTGGTT
* *
50543181 TATTTAGTCTGCTCCACTGCAATTTCAGAGAGATAAGACCTGA
131 TATTCAGTCTGCTCCACTGCAATTTCAGGGAGATAAGACCTGA
* *
50543224 TGCGATCTGCCCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCTGCTCCGCTGCAAC
1 TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCGCTGCAAC
* * *
50543289 TTCAAGGAGATAGGATTGGTTTATTCAATTTGCCCCACTACAACTTCAGGGAGATAAGATTGGTT
66 TTCAAGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTGGTT
* *
50543354 TATTCAGTCTGCTCCATTGCAATTTCAGGGAGAGAAGACCTGA
131 TATTCAGTCTGCTCCACTGCAATTTCAGGGAGATAAGACCTGA
* * *
50543397 TGCGATCTACTTTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCACTCCGCTGCAAC
1 TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCGCTGCAAC
* * * **
50543462 TTTAGGGAGATAGGATTGGTTTCTTCAATCTGTTCCACTACAACTTCAAAGAGATAAGATTGGTT
66 TTCAAGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTGGTT
* * * * *
50543527 TATTCAGTCTACTCCGCTGTAACTTCAAGGGAGATGAGACCTGA
131 TATTCAGTCTGCTCCACTGCAATTTC-AGGGAGATAAGACCTGA
50543571 T
1 T
50543572 TTTAATCCAC
Statistics
Matches: 308, Mismatches: 38, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
172 32 0.10
173 260 0.84
174 16 0.05
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (173 bp):
TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCGCTGCAAC
TTCAAGGAGATAGGATTGGTTTCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATTGGTT
TATTCAGTCTGCTCCACTGCAATTTCAGGGAGATAAGACCTGA
Found at i:50543851 original size:51 final size:49
Alignment explanation
Indices: 50543725--50543865 Score: 147
Period size: 51 Copynumber: 2.8 Consensus size: 49
50543715 AATGCCAGGG
* * *
50543725 AGATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAGA
1 AGATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTACAACACCA-A
* * * * *
50543775 GAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTATAACACCAA
1 -AGATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTACAACACCAA
* * *
50543825 AGATATAGTATTCACTGCCTTCAGCTTTAATCCGCTCCACT
1 AGATA-AG-ATTCGCTGCCTTCAGCTTTAATCTGTTCCACT
50543866 TCAGATTTAA
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
49 3 0.04
50 3 0.04
51 67 0.92
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (49 bp):
AGATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTACAACACCAA
Found at i:50544097 original size:51 final size:51
Alignment explanation
Indices: 50543975--50544121 Score: 170
Period size: 51 Copynumber: 2.9 Consensus size: 51
50543965 CTCTCAGTCT
* **
50543975 TAACGCTAGGGAGATAAGATTCGCTGCC-TTAGCTTTAATCTGCTCTGCTA
1 TAACGCCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTA
* * * * * * *
50544025 CAATGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTG
1 TAACGCCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTA
* * *
50544076 TAACGCCAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATCTGCTC
1 TAACGCCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTC
50544122 TATTTCAGTT
Statistics
Matches: 77, Mismatches: 19, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
50 22 0.29
51 55 0.71
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (51 bp):
TAACGCCAGGGAGATAAGATTCGCTGCCTTTAGCTTTAATCTGCTCCACTA
Found at i:50544214 original size:260 final size:261
Alignment explanation
Indices: 50543720--50544327 Score: 835
Period size: 260 Copynumber: 2.3 Consensus size: 261
50543710 ATTTTAATGC
* * *
50543720 CAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCTAGAGAAACAAGAT
1 CAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAGAGAAACAAGAT
* *
50543785 TCGCTACCTTTAGCTTTAATCTGTTCCACTATAACACCAAAGATATAGTATTCACTGCCTTCAGC
66 TCGCTACCTTTAGCTTTAATCTGTTCCACTATAACACCAAAGAGATAGGATTCACTGCCTTCAGC
*
50543850 TTTAATCCGCTCCACTTCAGATTTAATCTATTCCACTGCAACGCCAGGAAAACAATACTCGCTAC
131 TTTAATCCGCTCCACTTCAGATTTAATCTATTCCACTGCAACGCCAGGAAAACAAGACTCGCTAC
* * * *
50543915 ATTTAGCTTTAATCTATTCCACTACAATGTTAGGGAAATAAGATTCGCT-GCTCTCAGTCTTAAC
196 ATTTAGCTTTAATCGATTCCACTACAATGCTAGGGAAATAAGATTCACTACCT-TCAGTCTTAAC
50543979 G-
260 GT
* * * *
50543980 CTAGGGAGATAAGATTCGCTGCCTT-AGCTTTAATCTGCTCTGCTACAATGCCAGGGAAACAAGA
1 C-AGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAGAGAAACAAGA
* * * *
50544044 TTCGCTACCTTTAGCTTTAATCTGTTCCACTGTAACGCCAAGGAGATAGGATTCGCTGCCTTCAG
65 TTCGCTACCTTTAGCTTTAATCTGTTCCACTATAACACCAAAGAGATAGGATTCACTGCCTTCAG
* * * * * * * *
50544109 CTTTAATCTGCTCTATTTCAGTTTTAATCTATTCCATTGCAATGCCAGGGAAACAAGATTCGCTA
130 CTTTAATCCGCTCCACTTCAGATTTAATCTATTCCACTGCAACGCCAGGAAAACAAGACTCGCTA
* * * * * *
50544174 CCTTTAGCTTTAATCGGTTCCACTACAATGCTATGGAAATAAGATTCACTACCTTTAGTTTTAAT
195 CATTTAGCTTTAATCGATTCCACTACAATGCTAGGGAAATAAGATTCACTACCTTCAGTCTTAAC
50544239 GT
260 GT
* *
50544241 CAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAAAGAAATAAGAT
1 CAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAGAGAAACAAGAT
** * *
50544306 TTACTGCCTTCAGCTTTAATCT
66 TCGCTACCTTTAGCTTTAATCT
50544328 ACTATGACAT
Statistics
Matches: 302, Mismatches: 42, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
260 224 0.74
261 78 0.26
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (261 bp):
CAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAGAGAAACAAGAT
TCGCTACCTTTAGCTTTAATCTGTTCCACTATAACACCAAAGAGATAGGATTCACTGCCTTCAGC
TTTAATCCGCTCCACTTCAGATTTAATCTATTCCACTGCAACGCCAGGAAAACAAGACTCGCTAC
ATTTAGCTTTAATCGATTCCACTACAATGCTAGGGAAATAAGATTCACTACCTTCAGTCTTAACG
T
Found at i:50544300 original size:87 final size:90
Alignment explanation
Indices: 50544149--50544404 Score: 257
Period size: 87 Copynumber: 2.8 Consensus size: 90
50544139 ATTCCATTGC
* * * * * * * * *
50544149 AATGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCGGTTCCACTACAATGCTATGGAAAT
1 AATGTCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAAT
*
50544214 AAGATTCACTACCTTTAG-TT-T-T
66 AAGATTCACTACCTTCAGCTTATCT
* * * *
50544236 AATGTCAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAAAGAAAT
1 AATGTCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAAT
* *
50544301 AAGATTTACTGCCTTCAGCTTTAATCT
66 AAGATTCACTACCTTCAGC-TT-ATCT
* * *
50544328 ACTATGACATCAGGGAAATAAGATTCGTTGCTTTCAGCTTTAATCTGTTCCACTGTAACGCCAAG
1 A--ATG---TCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG
50544393 GAAATAAGATTC
61 GAAATAAGATTC
50544405 GTTATGATAA
Statistics
Matches: 135, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
87 67 0.50
89 2 0.01
91 1 0.01
92 2 0.01
94 3 0.02
97 60 0.44
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (90 bp):
AATGTCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAAT
AAGATTCACTACCTTCAGCTTATCT
Found at i:50544407 original size:51 final size:50
Alignment explanation
Indices: 50544248--50544405 Score: 162
Period size: 51 Copynumber: 3.2 Consensus size: 50
50544238 TGTCAGGGAG
* * *
50544248 ATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGCAACGCCAAAGAA
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTG-TCCACTGTAACGCCAAGGAA
** * * ** *
50544299 ATAAGATTTACTGCCTTCAGCTTTAATC--T--ACTATGACATCAGGGAA
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTGTCCACTGTAACGCCAAGGAA
* *
50544345 ATAAGATTCGTTGCTTTCAGCTTTAATCTGTTCCACTGTAACGCCAAGGAA
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTG-TCCACTGTAACGCCAAGGAA
50544396 ATAAGATTCG
1 ATAAGATTCG
50544406 TTATGATAAC
Statistics
Matches: 83, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
46 33 0.40
48 1 0.01
49 1 0.01
51 48 0.58
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (50 bp):
ATAAGATTCGCTGCCTTCAGCTTTAATCTGTCCACTGTAACGCCAAGGAA
Found at i:50544756 original size:24 final size:24
Alignment explanation
Indices: 50544711--50544773 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
50544701 CGAATTGCCC
*
50544711 CCACTATAATCTTCAAGATTCAAT
1 CCACTGTAATCTTCAAGATTCAAT
* * *
50544735 CCTCTGTAATCTTTAAGGTTCAAT
1 CCACTGTAATCTTCAAGATTCAAT
*
50544759 CCACTGTAATTTTCA
1 CCACTGTAATCTTCA
50544774 GACATAAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGATTCAAT
Found at i:50550190 original size:22 final size:23
Alignment explanation
Indices: 50550136--50550190 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
50550126 ATATTTTATT
* * *
50550136 TTTTCTTTCATAAAGAAAGTTGTA
1 TTTTATTT-ATAAAAAAAGTTGAA
*
50550160 TTTTTTTTATAAAAAAAGTT-AA
1 TTTTATTTATAAAAAAAGTTGAA
50550182 TTTTATTTA
1 TTTTATTTA
50550191 AACATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 9 0.33
23 11 0.41
24 7 0.26
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (23 bp):
TTTTATTTATAAAAAAAGTTGAA
Found at i:50562953 original size:41 final size:41
Alignment explanation
Indices: 50562908--50563093 Score: 257
Period size: 41 Copynumber: 4.5 Consensus size: 41
50562898 ACCGACACTT
* * *
50562908 AGCCTGTTAGA-GATAAAGTCTGATATGTTTCACTGGCATCA
1 AGCCTGCTAGACG-TAAAGTCTGGTATGTTTCACCGGCATCA
*
50562949 AGCCTGCCAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
* * *
50562990 AGCCTGCTAGACGTAATGTCTGGTATGTTTTACTGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
* *
50563031 AGCCTGCTAGATGTAATGTCTGGTATGTTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
* *
50563072 AGCCTACTAGACGTAATGTCTG
1 AGCCTGCTAGACGTAAAGTCTG
50563094 AATTACTTTA
Statistics
Matches: 131, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
41 130 0.99
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGGTATGTTTCACCGGCATCA
Found at i:50563011 original size:82 final size:82
Alignment explanation
Indices: 50562908--50563094 Score: 286
Period size: 82 Copynumber: 2.3 Consensus size: 82
50562898 ACCGACACTT
* *
50562908 AGCCTGTTAGA-GATAAAGTCTGATATGTTTCACTGGCATCAAGCCTGCCAGACGTAAAGTCTGG
1 AGCCTGCTAGACG-TAATGTCTGATATGTTTCACTGGCATCAAGCCTGCCAGACGTAAAGTCTGG
50562972 TATGTTTCACCGGCATCA
65 TATGTTTCACCGGCATCA
* * * * *
50562990 AGCCTGCTAGACGTAATGTCTGGTATGTTTTACTGGCATCAAGCCTGCTAGATGTAATGTCTGGT
1 AGCCTGCTAGACGTAATGTCTGATATGTTTCACTGGCATCAAGCCTGCCAGACGTAAAGTCTGGT
50563055 ATGTTTCACCGGCATCA
66 ATGTTTCACCGGCATCA
*
50563072 AGCCTACTAGACGTAATGTCTGA
1 AGCCTGCTAGACGTAATGTCTGA
50563095 ATTACTTTAT
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
82 94 0.99
83 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (82 bp):
AGCCTGCTAGACGTAATGTCTGATATGTTTCACTGGCATCAAGCCTGCCAGACGTAAAGTCTGGT
ATGTTTCACCGGCATCA
Found at i:50566073 original size:21 final size:21
Alignment explanation
Indices: 50566047--50566160 Score: 70
Period size: 21 Copynumber: 5.4 Consensus size: 21
50566037 CCAGAAGGGT
*
50566047 TGAACGAAAGCTCATAATAGC
1 TGAACGAAAGCTCATAAGAGC
* * *
50566068 TGAACGGAAA-CCCATAAGGGT
1 TGAAC-GAAAGCTCATAAGAGC
* * *
50566089 TAAACAAAAGCTCAAAAGAGC
1 TGAACGAAAGCTCATAAGAGC
* * * *
50566110 TGAACGAAAACTTATATGAGT
1 TGAACGAAAGCTCATAAGAGC
* *
50566131 TGAAC-AGAAGCTCATGAGAGT
1 TGAACGA-AAGCTCATAAGAGC
*
50566152 TAAACGAAA
1 TGAACGAAA
50566161 AGTAAACATG
Statistics
Matches: 67, Mismatches: 22, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
20 4 0.06
21 58 0.87
22 5 0.07
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.18
Consensus pattern (21 bp):
TGAACGAAAGCTCATAAGAGC
Found at i:50566088 original size:42 final size:42
Alignment explanation
Indices: 50566032--50566120 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
50566022 AGTGCTAAAA
* * * *
50566032 AAAACCCAGAAGGGTTGAACGAAAGCTCATAATAGCTGAACG
1 AAAACCCAGAAGGGTTAAACAAAAGCTCAAAAGAGCTGAACG
* *
50566074 GAAACCCATAAGGGTTAAACAAAAGCTCAAAAGAGCTGAACG
1 AAAACCCAGAAGGGTTAAACAAAAGCTCAAAAGAGCTGAACG
50566116 AAAAC
1 AAAAC
50566121 TTATATGAGT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.12
Consensus pattern (42 bp):
AAAACCCAGAAGGGTTAAACAAAAGCTCAAAAGAGCTGAACG
Found at i:50566142 original size:42 final size:42
Alignment explanation
Indices: 50566004--50566144 Score: 115
Period size: 42 Copynumber: 3.4 Consensus size: 42
50565994 AAGCTCGAAG
* * * ** * *
50566004 GTTGAACAGAAGCACATAAGTGCT-AAAAAAAACCCAGAAGG
1 GTTGAACAGAAGCTCAAAAGAGCTGAACGAAAACCCATAAGA
* * * *
50566045 GTTGAAC-GAAAGCTCATAATAGCTGAACGGAAACCCATAAGG
1 GTTGAACAG-AAGCTCAAAAGAGCTGAACGAAAACCCATAAGA
* * ** *
50566087 GTTAAACAAAAGCTCAAAAGAGCTGAACGAAAACTTATATGA
1 GTTGAACAGAAGCTCAAAAGAGCTGAACGAAAACCCATAAGA
50566129 GTTGAACAGAAGCTCA
1 GTTGAACAGAAGCTCA
50566145 TGAGAGTTAA
Statistics
Matches: 79, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
40 1 0.01
41 19 0.24
42 59 0.75
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.16
Consensus pattern (42 bp):
GTTGAACAGAAGCTCAAAAGAGCTGAACGAAAACCCATAAGA
Found at i:50573474 original size:18 final size:18
Alignment explanation
Indices: 50573461--50573506 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
50573451 TTTTTTATCT
*
50573461 TTCATGTTCGTTTTACGG
1 TTCATGTTCATTTTACGG
50573479 TTCATGTTCATTTTACGG
1 TTCATGTTCATTTTACGG
50573497 TTCATGTTCA
1 TTCATGTTCA
50573507 AGGTTCGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.15, C:0.17, G:0.17, T:0.50
Consensus pattern (18 bp):
TTCATGTTCATTTTACGG
Found at i:50583057 original size:16 final size:16
Alignment explanation
Indices: 50583036--50583069 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
50583026 CTTCAACCTC
*
50583036 TCATTTCCTTCTCATT
1 TCATTTCCTCCTCATT
50583052 TCATTTCCTCCTCATT
1 TCATTTCCTCCTCATT
50583068 TC
1 TC
50583070 CTCTCCGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.53
Consensus pattern (16 bp):
TCATTTCCTCCTCATT
Found at i:50585196 original size:20 final size:20
Alignment explanation
Indices: 50585171--50585210 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
50585161 AATATTTTCC
* *
50585171 AGTAAATCATTTTACAGAAA
1 AGTAAAACACTTTACAGAAA
*
50585191 AGTAAAACACTTTCCAGAAA
1 AGTAAAACACTTTACAGAAA
50585211 TCATTTTACG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.15, G:0.10, T:0.25
Consensus pattern (20 bp):
AGTAAAACACTTTACAGAAA
Found at i:50591327 original size:4 final size:4
Alignment explanation
Indices: 50591320--50591364 Score: 72
Period size: 4 Copynumber: 11.0 Consensus size: 4
50591310 AAATAAATAT
*
50591320 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAACA TAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAA-A GAAA GAAA
50591365 AAGGGAAAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
4 35 0.92
5 3 0.08
ACGTcount: A:0.73, C:0.02, G:0.22, T:0.02
Consensus pattern (4 bp):
GAAA
Found at i:50591942 original size:16 final size:16
Alignment explanation
Indices: 50591921--50591972 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
50591911 TTTGGTTCGC
50591921 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
50591937 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
50591953 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
50591969 TGTA
1 TGTA
50591973 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:50592058 original size:39 final size:43
Alignment explanation
Indices: 50591953--50592062 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
50591943 GGATTAGAGG
50591953 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
50591998 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
50592038 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
50592063 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:50596313 original size:16 final size:16
Alignment explanation
Indices: 50596292--50596324 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50596282 GTAGTGGATT
*
50596292 GTTGTTGTTGGTAGTG
1 GTTGTTGGTGGTAGTG
50596308 GTTGTTGGTGGTAGTG
1 GTTGTTGGTGGTAGTG
50596324 G
1 G
50596325 ATTAGTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.00, G:0.48, T:0.45
Consensus pattern (16 bp):
GTTGTTGGTGGTAGTG
Found at i:50596954 original size:20 final size:20
Alignment explanation
Indices: 50596929--50596978 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
50596919 TGGCTTAAAA
50596929 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
50596949 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
50596966 GTGGTAGTGGATT
1 TTGGTAGTGGATT
50596979 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:50601592 original size:20 final size:20
Alignment explanation
Indices: 50601567--50601616 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
50601557 TGGCTTAAAA
50601567 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
50601587 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
50601604 GTGGTAGTGGATT
1 TTGGTAGTGGATT
50601617 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:50602426 original size:17 final size:17
Alignment explanation
Indices: 50602404--50602437 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50602394 ATCCACTAAT
*
50602404 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
50602421 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
50602438 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:50607065 original size:17 final size:17
Alignment explanation
Indices: 50607043--50607076 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50607033 ATCCACTAAT
*
50607043 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
50607060 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
50607077 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:50609054 original size:59 final size:60
Alignment explanation
Indices: 50608949--50609087 Score: 201
Period size: 59 Copynumber: 2.3 Consensus size: 60
50608939 ATGAAAGCGC
* * *
50608949 ATGAAAGCTCTCTAAAAGTTGAGTGACAAAATTGCAAGGATTTCATTTTGGGTGACCAAA
1 ATGAAAGGTCCCTAAAAGTTGACTGACAAAATTGCAAGGATTTCATTTTGGGTGACCAAA
* * *
50609009 ATGAAAGGTCCCTAAAAGTTG-CTGACGAGATTGCAAGGATTTCATTTTTGGTGACCAAA
1 ATGAAAGGTCCCTAAAAGTTGACTGACAAAATTGCAAGGATTTCATTTTGGGTGACCAAA
50609068 ATGAAAGAGT-CCTAAAAGTT
1 ATGAAAG-GTCCCTAAAAGTT
50609088 TAGAGACCAA
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
59 51 0.71
60 21 0.29
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (60 bp):
ATGAAAGGTCCCTAAAAGTTGACTGACAAAATTGCAAGGATTTCATTTTGGGTGACCAAA
Found at i:50609768 original size:22 final size:22
Alignment explanation
Indices: 50609743--50609785 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
50609733 TCAAAGGTTG
*
50609743 ATTTTGATTTGCAACCAATTTT
1 ATTTTGATTTGAAACCAATTTT
50609765 ATTTTGATTTGAAACCAATTT
1 ATTTTGATTTGAAACCAATTT
50609786 ACCCTGTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (22 bp):
ATTTTGATTTGAAACCAATTTT
Found at i:50611046 original size:89 final size:89
Alignment explanation
Indices: 50610884--50611146 Score: 325
Period size: 89 Copynumber: 3.0 Consensus size: 89
50610874 TTCTAGAGAA
* * * ** * *
50610884 ATTACTATTC-AAAATTTTTGTATTATTTTTGTATCTGTAAATCAAATTTATTCTGTATTATTTG
1 ATTAATATTCTAAAATGTTTGTATT-TTCTTGTATCTGTAAATTTAATTTAGTCCGTATTATTTG
50610948 TTGTTCAAATTTTATATTTTTATGT
65 TTGTTCAAATTTTATATTTTTATGT
* * *
50610973 ATTCATTTTTTAAAATGTTTGTATTTTCTTGTATCTGTAAATTTAATTTAGTCCGTATTATTTGT
1 ATTAATATTCTAAAATGTTTGTATTTTCTTGTATCTGTAAATTTAATTTAGTCCGTATTATTTGT
*
50611038 TGTTCAAATTTTATATTTTCATGT
66 TGTTCAAATTTTATATTTTTATGT
* * *
50611062 ATTAATATTCTAGAATGTTTGTATTTTCTTGTATATGTAAATTTAATTT-GTTGCGTATTATTAT
1 ATTAATATTCTAAAATGTTTGTATTTTCTTGTATCTGTAAATTTAATTTAG-TCCGTATTATT-T
* * *
50611126 -TTTTTCGAATTATATATTTTT
64 GTTGTTCAAATTTTATATTTTT
50611147 TTGTTAAATA
Statistics
Matches: 150, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
88 1 0.01
89 135 0.90
90 14 0.09
ACGTcount: A:0.27, C:0.06, G:0.10, T:0.57
Consensus pattern (89 bp):
ATTAATATTCTAAAATGTTTGTATTTTCTTGTATCTGTAAATTTAATTTAGTCCGTATTATTTGT
TGTTCAAATTTTATATTTTTATGT
Found at i:50614238 original size:17 final size:17
Alignment explanation
Indices: 50614205--50614239 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
50614195 CTTAATAAAT
**
50614205 AATTTATAATTTTTTTA
1 AATTTATAATTAATTTA
50614222 AATTTATAATTAATTTA
1 AATTTATAATTAATTTA
50614239 A
1 A
50614240 TTAAGAAACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTTATAATTAATTTA
Found at i:50614442 original size:40 final size:42
Alignment explanation
Indices: 50614371--50614466 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 42
50614361 AAGTGCTTCC
*
50614371 TCAAGGAAGCG-CTT-TGTCCACATGGACACAAAGCGC-ACCT
1 TCAAGGAAGCGTTTTCTGTCCACATGGA-ACAAAGCGCTACCT
* *
50614411 TCAAGGAAGCGTTTTCTGTCCACGTGG-ACAAAGCGCTTCCT
1 TCAAGGAAGCGTTTTCTGTCCACATGGAACAAAGCGCTACCT
*
50614452 T-GAGGAAGCGTTTTC
1 TCAAGGAAGCGTTTTC
50614467 CTGCCTTATC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
40 33 0.67
41 6 0.12
42 10 0.20
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (42 bp):
TCAAGGAAGCGTTTTCTGTCCACATGGAACAAAGCGCTACCT
Found at i:50614624 original size:17 final size:17
Alignment explanation
Indices: 50614604--50614636 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
50614594 TAAAACTCCA
50614604 TTTTTCATGTCAATTTT
1 TTTTTCATGTCAATTTT
*
50614621 TTTTTCATTTCAATTT
1 TTTTTCATGTCAATTT
50614637 CTTCTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.12, G:0.03, T:0.67
Consensus pattern (17 bp):
TTTTTCATGTCAATTTT
Found at i:50614971 original size:17 final size:17
Alignment explanation
Indices: 50614951--50614984 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50614941 TTCTCAAGTT
*
50614951 ATTTGAATTTCATTTCA
1 ATTTAAATTTCATTTCA
50614968 ATTTAAATTTCATTTCA
1 ATTTAAATTTCATTTCA
50614985 CTTTTTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.03, T:0.53
Consensus pattern (17 bp):
ATTTAAATTTCATTTCA
Found at i:50614982 original size:28 final size:28
Alignment explanation
Indices: 50614914--50614982 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 28
50614904 CAATTTCTTC
***
50614914 TTAAAATTCATTTGAATTTCATTTTTTT
1 TTAAAATTCATTTGAATTTCATTTCAAT
* *
50614942 TCTCAAGTT-ATTTGAATTTCATTTCAAT
1 T-TAAAATTCATTTGAATTTCATTTCAAT
*
50614970 TTAAATTTCATTT
1 TTAAAATTCATTT
50614983 CACTTTTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
27 5 0.16
28 22 0.69
29 5 0.16
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.57
Consensus pattern (28 bp):
TTAAAATTCATTTGAATTTCATTTCAAT
Found at i:50615060 original size:272 final size:268
Alignment explanation
Indices: 50614594--50615549 Score: 1421
Period size: 272 Copynumber: 3.6 Consensus size: 268
50614584 TTATTTGCCC
* * *
50614594 TAAAACTCCATTTTTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTCGAATT
1 TAAAACTTCATTTGTCATGTCAA-TTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
*
50614659 TCA-TTTTTTCTCATGTTATTTGAATTTCATTTCAATTTAAATTTCATTTTCACTTTTTTTTTAT
65 TCATTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTAAATTTCA-TTTCAC--TTTTTTTCT
* *
50614723 TTTTTTAATTTAAACTTCATTTGTGATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATTC
127 TTTTTTAATTAAAACTTCATTTGTTATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATTC
*
50614788 ATTTGAATTTCAATTTTTCTCATGTTATTTAAATTTCATTTAAATTTTAATTTCATTTCACTTTT
192 ATTTGAATTTCATTTTTTCTCATGTTATTTAAATTTCATTT-AATTTTAATTTCATTTCACTTTT
50614853 TTTCCTTTTTTAAT
256 TTT-CTTTTTTAAT
50614867 TAAAACTTCATTTGTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
1 TAAAACTTCATTTGTCATGTCAA-TTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
*
50614932 TCATTTTTTTTCTCAAGTTATTTGAATTTCATTTCAATTTAAATTTCATTTCACTTTTTTTCTTT
65 TCA-TTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTAAATTTCATTTCACTTTTTTTCTTT
50614997 TTTTAATTAAAACTTCATTTGTTATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATTCAT
129 TTTTAATTAAAACTTCATTTGTTATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATTCAT
*
50615062 TTGAATTTCATTTTTTCTCAGGTTATTTAAATTTCATTTCAATTTTAATTTCATTTCACTTTTTT
194 TTGAATTTCATTTTTTCTCATGTTATTTAAATTTCATTT-AATTTTAATTTCATTTCACTTTTTT
50615127 TCTTTTTTAAT
258 TCTTTTTTAAT
*
50615138 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCGTTTGAATTT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATTT
* *
50615203 CATTTTTTTCTCATGTTATTTGAATTTCATTTTAATTTGAATTTCATTTCACTTTTTTTC-TTTT
66 CATTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTAAATTTCATTTCACTTTTTTTCTTTTT
* * * * *
50615267 TTAATTAAAAAATT-ATTTCTTATGTCAA-TTTTTTTCCTTTCAA-TTTCTTCTTAAAATTCATT
131 TTAATT-AAAACTTCATTTGTTATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATTCATT
* *** *
50615329 TGAATTT-TTTTTTTCTCATGTTATTTTTTTTCTCATGTT-ATTTGAATTTCATTTCACTTTTTT
195 TGAATTTCATTTTTTCTCATGTTATTTAAATT-TCAT-TTAATTTTAATTTCATTTCAC-TTTTT
50615392 TTCTTTTTTAAT
257 TTCTTTTTTAAT
* * * * * *
50615404 TAAAATTTTATTTCTCATGTCAATTTTTTTTCATTTCAATTTCTTTTTAAATTTAATTTGAATTT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATTT
* * * *
50615469 CATGATTTTTGTCATGTTATTTGAATTTCATTTAAATTTTAATTTCATTTCAC---TTTT-TTTT
66 CAT-TTTTTTCTCATGTTATTTGAATTTCATTTCAATTTAAATTTCATTTCACTTTTTTTCTTTT
50615530 TTTAATTAAAACTTCATTTG
130 TTTAATTAAAACTTCATTTG
50615550 AATTTCATTT
Statistics
Matches: 636, Mismatches: 38, Indels: 27
0.91 0.05 0.04
Matches are distributed among these distances:
263 6 0.01
264 18 0.03
265 36 0.06
266 107 0.17
267 60 0.09
268 23 0.04
269 61 0.10
270 43 0.07
271 33 0.05
272 136 0.21
273 65 0.10
274 6 0.01
275 42 0.07
ACGTcount: A:0.24, C:0.12, G:0.04, T:0.60
Consensus pattern (268 bp):
TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATTT
CATTTTTTTCTCATGTTATTTGAATTTCATTTCAATTTAAATTTCATTTCACTTTTTTTCTTTTT
TTAATTAAAACTTCATTTGTTATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATTCATTT
GAATTTCATTTTTTCTCATGTTATTTAAATTTCATTTAATTTTAATTTCATTTCACTTTTTTTCT
TTTTTAAT
Found at i:50615111 original size:17 final size:17
Alignment explanation
Indices: 50615086--50615124 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
50615076 TTCTCAGGTT
*
50615086 ATTTAAATTTCATTTCA
1 ATTTTAATTTCATTTCA
50615103 ATTTTAATTTCATTTCA
1 ATTTTAATTTCATTTCA
*
50615120 CTTTT
1 ATTTT
50615125 TTTCTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTAATTTCATTTCA
Found at i:50615179 original size:134 final size:133
Alignment explanation
Indices: 50614594--50615549 Score: 1334
Period size: 137 Copynumber: 7.1 Consensus size: 133
50614584 TTATTTGCCC
* * *
50614594 TAAAACTCCATTTTTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTCGAATT
1 TAAAACTTCATTTGTCATGTCAA-TTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
* *
50614659 TCATTTTTTCTCATGTTATTTGAATTTCATTTCAATTTAAATTTCATTTTCACTTTTTTTTTATT
65 TCATTTTTTCTCATGTTATTTGAATTTCATTTCAATTTTAATTTCA-TTTCAC--TTTTTTT-CT
50614724 TTTTTAAT
126 TTTTTAAT
* * * *
50614732 TTAAACTTCATTTGTGATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATTCATTTGAATT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAA-TTTCTTCTTAAAATTCATTTGAATT
* * *
50614797 TCAATTTTTCTCATGTTATTTAAATTTCATTTAAATTTTAATTTCATTTCACTTTTTTTCCTTTT
65 TCATTTTTTCTCATGTTATTTGAATTTCATTTCAATTTTAATTTCATTTCACTTTTTTT-CTTTT
50614862 TTAAT
129 TTAAT
50614867 TAAAACTTCATTTGTCATGTCAATTTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
1 TAAAACTTCATTTGTCATGTCAA-TTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
* *
50614932 TCATTTTTTTTCTCAAGTTATTTGAATTTCATTTCAATTTAAATTTCATTTCACTTTTTTTCTTT
65 TCA--TTTTTTCTCATGTTATTTGAATTTCATTTCAATTTTAATTTCATTTCACTTTTTTTC-TT
50614997 TTTTAAT
127 TTTTAAT
* * *
50615004 TAAAACTTCATTTGTTATGTCAATTTTTTTTCATTTTAATTTTTTTCTTAAAATTCATTTGAATT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAA-TTTCTTCTTAAAATTCATTTGAATT
* *
50615069 TCATTTTTTCTCAGGTTATTTAAATTTCATTTCAATTTTAATTTCATTTCACTTTTTTTCTTTTT
65 TCATTTTTTCTCATGTTATTTGAATTTCATTTCAATTTTAATTTCATTTCACTTTTTTTCTTTTT
50615134 TAAT
130 TAAT
*
50615138 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCGTTTGAATTT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATTT
* *
50615203 CATTTTTTTCTCATGTTATTTGAATTTCATTTTAATTTGAATTTCATTTCACTTTTTTTCTTTTT
66 CA-TTTTTTCTCATGTTATTTGAATTTCATTTCAATTTTAATTTCATTTCACTTTTTTTCTTTTT
50615268 TAAT
130 TAAT
* * * *
50615272 TAAAAAATT-ATTTCTTATGTCAA-TTTTTTTCCTTTCAATTTCTTCTTAAAATTCATTTGAATT
1 T-AAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATT
* *** *
50615335 T-TTTTTTTCTCATGTTATTTTTTTTCTCATGTT--ATTTGAATTTCATTTCACTTTTTTTTCTT
65 TCATTTTTTCTCATGTTATTTGAATT-TCAT-TTCAATTTTAATTTCATTTCAC-TTTTTTTCTT
50615397 TTTTAAT
127 TTTTAAT
* * * * * *
50615404 TAAAATTTTATTTCTCATGTCAATTTTTTTTCATTTCAATTTCTTTTTAAATTTAATTTGAATTT
1 TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATTT
* *
50615469 CATGATTTTTGTCATGTTATTTGAATTTCATTTAAATTTTAATTTCATTTCAC--TTTTT-TTTT
66 CAT--TTTTTCTCATGTTATTTGAATTTCATTTCAATTTTAATTTCATTTCACTTTTTTTCTTTT
50615531 TTAAT
129 TTAAT
50615536 TAAAACTTCATTTG
1 TAAAACTTCATTTG
50615550 AATTTCATTT
Statistics
Matches: 740, Mismatches: 60, Indels: 42
0.88 0.07 0.05
Matches are distributed among these distances:
131 44 0.06
132 55 0.07
133 109 0.15
134 124 0.17
135 128 0.17
136 66 0.09
137 130 0.18
138 84 0.11
ACGTcount: A:0.24, C:0.12, G:0.04, T:0.60
Consensus pattern (133 bp):
TAAAACTTCATTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTCTTAAAATTCATTTGAATTT
CATTTTTTCTCATGTTATTTGAATTTCATTTCAATTTTAATTTCATTTCACTTTTTTTCTTTTTT
AAT
Found at i:50615357 original size:17 final size:17
Alignment explanation
Indices: 50615335--50615371 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
50615325 CATTTGAATT
50615335 TTTTTTTTCTCATGTTA
1 TTTTTTTTCTCATGTTA
50615352 TTTTTTTTCTCATGTTA
1 TTTTTTTTCTCATGTTA
50615369 TTT
1 TTT
50615372 GAATTTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTTTTTTCTCATGTTA
Found at i:50615442 original size:16 final size:16
Alignment explanation
Indices: 50615407--50615451 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 16
50615397 TTTTAATTAA
50615407 AATTTTATTTCTCATGTC
1 AATTTT-TTT-TCATGTC
*
50615425 AATTTTTTTTCATTTC
1 AATTTTTTTTCATGTC
50615441 AATTTCTTTTT
1 AATTT-TTTTT
50615452 AAATTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 11 0.44
17 8 0.32
18 6 0.24
ACGTcount: A:0.20, C:0.13, G:0.02, T:0.64
Consensus pattern (16 bp):
AATTTTTTTTCATGTC
Found at i:50616102 original size:6 final size:6
Alignment explanation
Indices: 50616093--50616184 Score: 109
Period size: 6 Copynumber: 15.7 Consensus size: 6
50616083 ATATAAATTC
* *
50616093 ATTTCA ATTTC- ATTTCA ATTTCA ATTTCA ATTTTA ATTCCA ATTTCA
1 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA
* * *
50616140 ATTTCA AATTGA ATTTCA A-TTCA A-TACA AGTTTCA ATTTCA ATTT
1 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA A-TTTCA ATTTCA ATTT
50616185 TTTTATATAT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
5 14 0.19
6 55 0.75
7 4 0.05
ACGTcount: A:0.35, C:0.15, G:0.02, T:0.48
Consensus pattern (6 bp):
ATTTCA
Found at i:50626384 original size:18 final size:19
Alignment explanation
Indices: 50626352--50626389 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
50626342 TTATATCTAA
* *
50626352 TATATTTTATGTAA-TATT
1 TATATTTGATATAATTATT
50626370 TATATTTGATATAATTATT
1 TATATTTGATATAATTATT
50626389 T
1 T
50626390 TCATATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
TATATTTGATATAATTATT
Found at i:50626434 original size:22 final size:22
Alignment explanation
Indices: 50626409--50626454 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
50626399 AATTTACTTC
50626409 AAATATATAACA-TTATATATTT
1 AAATATATAACAGTTATAT-TTT
* *
50626431 AAATTTATAATAGTTATATTTT
1 AAATATATAACAGTTATATTTT
50626453 AA
1 AA
50626455 TAATATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
AAATATATAACAGTTATATTTT
Found at i:50626772 original size:14 final size:14
Alignment explanation
Indices: 50626753--50626791 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
50626743 TTAAACCACA
50626753 ATTTTCAAAAGCAC
1 ATTTTCAAAAGCAC
*
50626767 ATTTTCATAA-CAC
1 ATTTTCAAAAGCAC
50626780 -TTTTCAAAAGCA
1 ATTTTCAAAAGCA
50626792 TTGAAAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 8 0.36
13 5 0.23
14 9 0.41
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (14 bp):
ATTTTCAAAAGCAC
Found at i:50629822 original size:30 final size:28
Alignment explanation
Indices: 50629782--50629859 Score: 81
Period size: 30 Copynumber: 2.8 Consensus size: 28
50629772 TATTATTCGC
50629782 TATT-ATATTGTTACTATTTTGTTTTAT
1 TATTAATATTGTTACTATTTTGTTTTAT
*
50629809 TGTTTGAATATTG-TA-TAACTTTTGTTTTAT
1 T-ATT-AATATTGTTACT-A-TTTTGTTTTAT
*
50629839 TATTAATTTTGTTACTATTTT
1 TATTAATATTGTTACTATTTT
50629860 AGAGGTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
27 1 0.02
28 13 0.32
29 8 0.20
30 19 0.46
ACGTcount: A:0.23, C:0.04, G:0.09, T:0.64
Consensus pattern (28 bp):
TATTAATATTGTTACTATTTTGTTTTAT
Found at i:50634652 original size:15 final size:15
Alignment explanation
Indices: 50634632--50634667 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
50634622 AGTTTGGATG
*
50634632 GGCGGTGTGTTTACC
1 GGCGGTGCGTTTACC
50634647 GGCGGTGCGTTTACC
1 GGCGGTGCGTTTACC
*
50634662 TGCGGT
1 GGCGGT
50634668 TAGTGTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.22, G:0.42, T:0.31
Consensus pattern (15 bp):
GGCGGTGCGTTTACC
Found at i:50636187 original size:35 final size:35
Alignment explanation
Indices: 50636141--50636257 Score: 135
Period size: 35 Copynumber: 3.3 Consensus size: 35
50636131 ACTCTCTGTT
* *
50636141 TTGGTGTGTTTTGGTTGGACTAGCTTTTATGAGCA
1 TTGGTGTGTTTTGGATGGACTAGCTCTTATGAGCA
* * *
50636176 TTGGTGTGTTTTGGAGGGATTAGCTCTTATGAACA
1 TTGGTGTGTTTTGGATGGACTAGCTCTTATGAGCA
*** * *
50636211 TTGGTGTGTTTCAAATGGACTGGCTCTTACGAGCA
1 TTGGTGTGTTTTGGATGGACTAGCTCTTATGAGCA
50636246 TCTGGTGTGTTT
1 T-TGGTGTGTTT
50636258 GGGCAGTTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 58 0.85
36 10 0.15
ACGTcount: A:0.16, C:0.11, G:0.31, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTTGGATGGACTAGCTCTTATGAGCA
Found at i:50638112 original size:250 final size:250
Alignment explanation
Indices: 50637668--50638157 Score: 675
Period size: 250 Copynumber: 2.0 Consensus size: 250
50637658 CCTCTGGTTT
*
50637668 CCAACCCCGTCACCCTTGTTGCACCAATAAGAACCATTCCTACCAGCTACTCTGACTTCACTAGT
1 CCAACCCCGTCACCCTTGTTGCACCAATAAGAACCATTCCTACCAGCTACTCTGACTCCACTAGT
* * *
50637733 TATCGTAATGCCTCAACTGCAAACTATTGTGTCCCCTCATGGACCTTTAGACCAGATAACTCATT
66 TATCGCAATGCCTCAACTGCAAACTATTGTGTCCCCTCATGGACCCTTAAACCAGATAACTCATT
* * *
50637798 GTTTGTAAGAGGACATAACTTGTCTCACAACCATGCTTACTCTACCAACCATGACTCTCACTCCC
131 GTTTGTAAGAGGACATAACTTGTCTCACAACCATGCCTACTCCACCAACCATGACTCACACTCCC
* *
50637863 TTAAACCAGGGTTTTAACCAACAGACGTTAGGTCTTCAACCTCACCCTTGTTGCA
196 TTAAACCAGGGTTTTAACCAACAAACGTAAGGTCTTCAACCTCACCCTTGTTGCA
* * * * *
50637918 CCAACCCTGTCACCCTTGTTGCACCAATAGGAACCATTCC-CCTCAGTTGCTCTGACTCCACTAG
1 CCAACCCCGTCACCCTTGTTGCACCAATAAGAACCATTCCTAC-CAGCTACTCTGACTCCACTAG
* *
50637982 TTATCGCAGTGCCTCAATTGC-AACT-TGGTGTGTCCCCT-ATTGGACCCTTAAACCAGATAACT
65 TTATCGCAATGCCTCAACTGCAAACTAT--TGTGTCCCCTCA-TGGACCCTTAAACCAGATAACT
* * * * *
50638044 CATTTTTTGTATA-AGGACATAACTTGTCTCACAACCATGCCTGCTCCACCAATCGTTACTCACA
127 CATTGTTTGTA-AGAGGACATAACTTGTCTCACAACCATGCCTACTCCACCAACCATGACTCACA
* * * *
50638108 CTCCCTTAAACTAGGGTTTTCACCAGCAAACGTAAGGTCTTTAACCTCAC
191 CTCCCTTAAACCAGGGTTTTAACCAACAAACGTAAGGTCTTCAACCTCAC
50638158 GGCTTAAAAG
Statistics
Matches: 210, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
248 1 0.00
249 6 0.03
250 202 0.96
251 1 0.00
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (250 bp):
CCAACCCCGTCACCCTTGTTGCACCAATAAGAACCATTCCTACCAGCTACTCTGACTCCACTAGT
TATCGCAATGCCTCAACTGCAAACTATTGTGTCCCCTCATGGACCCTTAAACCAGATAACTCATT
GTTTGTAAGAGGACATAACTTGTCTCACAACCATGCCTACTCCACCAACCATGACTCACACTCCC
TTAAACCAGGGTTTTAACCAACAAACGTAAGGTCTTCAACCTCACCCTTGTTGCA
Found at i:50641877 original size:50 final size:50
Alignment explanation
Indices: 50641812--50641986 Score: 152
Period size: 50 Copynumber: 3.4 Consensus size: 50
50641802 CCTGTACTGT
* * * * **
50641812 CAATGTCATATCCCAGATACGGAATTACATGGGAGTTCTCATATCGATGC
1 CAATGCCATGTCCCAGACACAGAATTACATGGGACCTCTCATATCGATGC
* ** *
50641862 CAATGCCATGTCCCAGACATAGTTTTACATGGGACCTCTCATCTCGATGC
1 CAATGCCATGTCCCAGACACAGAATTACATGGGACCTCTCATATCGATGC
* ** ** *
50641912 CAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATAATGC
1 CAATGCCATGTCCCAGACACAGAATTACATGGGACCTCTCAT-A--TC---GATGC
50641968 CAATGCCATGTCCCAGACA
1 CAATGCCATGTCCCAGACA
50641987 TGGTCTTACA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
50 79 0.77
53 2 0.02
56 22 0.21
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (50 bp):
CAATGCCATGTCCCAGACACAGAATTACATGGGACCTCTCATATCGATGC
Found at i:50655669 original size:22 final size:22
Alignment explanation
Indices: 50655627--50655670 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50655617 ATAAAATACT
*
50655627 GAAATATGTCTAGTACTTAAAA
1 GAAATATGTCTAGTACATAAAA
*
50655649 GAAATTATGTCTAG-GCATAAAA
1 GAAA-TATGTCTAGTACATAAAA
50655671 ATATTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (22 bp):
GAAATATGTCTAGTACATAAAA
Found at i:50667620 original size:44 final size:43
Alignment explanation
Indices: 50667571--50667691 Score: 107
Period size: 50 Copynumber: 2.6 Consensus size: 43
50667561 TTTGAGTACT
* *
50667571 TCTGATCAATGATAAGTGATAAATGGTACCTTTAGCTACACTTA
1 TCTGATCAATGATAAGTGATAAATGATAAC-TTAGCTACACTTA
* *
50667615 TCTGATCAGTGACAAGTGGCAAGTGATAAGTGATAACTTAGCTACACTTA
1 TCTGATCAATG---A-T---AAGTGATAAATGATAACTTAGCTACACTTA
* * *
50667665 TCTGATCAAGGACAAGTGATAAGTGAT
1 TCTGATCAATGATAAGTGATAAATGAT
50667692 CATACGTAAG
Statistics
Matches: 63, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
43 14 0.22
44 10 0.16
47 2 0.03
48 1 0.02
50 22 0.35
51 14 0.22
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.30
Consensus pattern (43 bp):
TCTGATCAATGATAAGTGATAAATGATAACTTAGCTACACTTA
Found at i:50667660 original size:50 final size:51
Alignment explanation
Indices: 50667584--50667691 Score: 148
Period size: 50 Copynumber: 2.1 Consensus size: 51
50667574 GATCAATGAT
* * *
50667584 AAGTGATAAATGGTACCTTTAGCTACACTTATCTGATC-AGTGACAAGTGGC
1 AAGTGATAAATGATAACTTTAGCTACACTTATCTGATCAAG-GACAAGTGAC
* *
50667635 AAGTGATAAGTGATAAC-TTAGCTACACTTATCTGATCAAGGACAAGTGAT
1 AAGTGATAAATGATAACTTTAGCTACACTTATCTGATCAAGGACAAGTGAC
50667685 AAGTGAT
1 AAGTGAT
50667692 CATACGTAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
50 35 0.69
51 16 0.31
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (51 bp):
AAGTGATAAATGATAACTTTAGCTACACTTATCTGATCAAGGACAAGTGAC
Found at i:50691278 original size:28 final size:28
Alignment explanation
Indices: 50691246--50691301 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
50691236 ATTTTTTTAA
* **
50691246 TAAAATACCAAAAATTTATTTTAAAAAT
1 TAAAAAACCAAAAAAGTATTTTAAAAAT
**
50691274 TAAAAAATTAAAAAAGTATTTTAAAAAT
1 TAAAAAACCAAAAAAGTATTTTAAAAAT
50691302 ATTTTAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34
Consensus pattern (28 bp):
TAAAAAACCAAAAAAGTATTTTAAAAAT
Found at i:50691306 original size:39 final size:39
Alignment explanation
Indices: 50691262--50691399 Score: 206
Period size: 39 Copynumber: 3.5 Consensus size: 39
50691252 ACCAAAAATT
50691262 TATTTTAAAAATTAAAAAATT-AAAAAAGTATTTTAAAAA
1 TATTTT-AAAATTAAAAAATTAAAAAAAGTATTTTAAAAA
*
50691301 TATTTTAAAATAAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAA
**
50691340 TATTTTAAAAATATTTTAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTT--AAA-ATTAAAAAATTAAAAAAAGTATTTTAAAAA
50691382 TATTTTAAAATTAAAAAA
1 TATTTTAAAATTAAAAAA
50691400 AGTATTTTAA
Statistics
Matches: 89, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
38 13 0.15
39 37 0.42
40 3 0.03
41 3 0.03
42 33 0.37
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (39 bp):
TATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:50691312 original size:10 final size:11
Alignment explanation
Indices: 50691284--50691391 Score: 90
Period size: 11 Copynumber: 10.4 Consensus size: 11
50691274 TAAAAAATTA
50691284 AAAAAGTATTTT
1 AAAAA-TATTTT
50691296 AAAAATATTTT
1 AAAAATATTTT
50691307 -AAAATA----
1 AAAAATATTTT
**
50691313 AAAAA-ATTAA
1 AAAAATATTTT
50691323 AAAAAGTATTTT
1 AAAAA-TATTTT
50691335 AAAAATATTTT
1 AAAAATATTTT
50691346 AAAAATATTTT
1 AAAAATATTTT
**
50691357 --AAA-ATTAA
1 AAAAATATTTT
50691365 AAAAAGTATTTT
1 AAAAA-TATTTT
50691377 AAAAATATTTT
1 AAAAATATTTT
50691388 AAAA
1 AAAA
50691392 TTAAAAAAAG
Statistics
Matches: 79, Mismatches: 6, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
6 1 0.01
7 4 0.05
8 3 0.04
9 3 0.04
10 14 0.18
11 33 0.42
12 21 0.27
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:50691374 original size:42 final size:40
Alignment explanation
Indices: 50691262--50691400 Score: 210
Period size: 42 Copynumber: 3.5 Consensus size: 40
50691252 ACCAAAAATT
*
50691262 TATTTTAAAAATTAAAAAATT-AAAAAAGTATTTTAAAAA
1 TATTTTAAAAATAAAAAAATTAAAAAAAGTATTTTAAAAA
50691301 TATTTT-AAAATAAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAAATAAAAAAATTAAAAAAAGTATTTTAAAAA
**
50691340 TATTTTAAAAATATTTTAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAAATA--AAAAAATTAAAAAAAGTATTTTAAAAA
*
50691382 TATTTTAAAATTAAAAAAA
1 TATTTTAAAAATAAAAAAA
50691401 GTATTTTAAA
Statistics
Matches: 90, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
38 13 0.14
39 30 0.33
40 10 0.11
42 37 0.41
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (40 bp):
TATTTTAAAAATAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:50691377 original size:31 final size:31
Alignment explanation
Indices: 50691335--50691411 Score: 147
Period size: 31 Copynumber: 2.5 Consensus size: 31
50691325 AAAGTATTTT
50691335 AAAAA-TATTTTAAAAATATTTTAAAATTAA
1 AAAAAGTATTTTAAAAATATTTTAAAATTAA
50691365 AAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAAGTATTTTAAAAATATTTTAAAATTAA
50691396 AAAAAGTATTTTAAAA
1 AAAAAGTATTTTAAAA
50691412 TTAAAAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 5 0.11
31 41 0.89
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (31 bp):
AAAAAGTATTTTAAAAATATTTTAAAATTAA
Found at i:50691429 original size:31 final size:31
Alignment explanation
Indices: 50691335--50691422 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 31
50691325 AAAGTATTTT
***
50691335 AAAAA-TATTTTAAAAATATTTTAAAATTAA
1 AAAAAGTATTTTAAAAATATAAAAAAATTAA
***
50691365 AAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAAGTATTTTAAAAATATAAAAAAATTAA
50691396 AAAAAGTATTTT-AAAAT-TAAAAAAATT
1 AAAAAGTATTTTAAAAATATAAAAAAATT
50691423 TTAAAAATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
29 7 0.13
30 10 0.19
31 37 0.69
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (31 bp):
AAAAAGTATTTTAAAAATATAAAAAAATTAA
Found at i:50696882 original size:31 final size:29
Alignment explanation
Indices: 50696811--50696882 Score: 71
Period size: 28 Copynumber: 2.5 Consensus size: 29
50696801 TTTGTTTATA
*
50696811 CTTAT-TATGTAAATTTTATATATATATG
1 CTTATATATGTATATTTTATATATATATG
*
50696839 CTT-CATAT-TATATTATTAT-TATATAATTG
1 CTTATATATGTATATT-TTATATATAT-A-TG
50696868 CTTATATATGTATAT
1 CTTATATATGTATAT
50696883 ACGTAAATGT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
27 10 0.29
28 11 0.31
29 5 0.14
30 4 0.11
31 5 0.14
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (29 bp):
CTTATATATGTATATTTTATATATATATG
Found at i:50702007 original size:108 final size:106
Alignment explanation
Indices: 50701810--50702008 Score: 242
Period size: 108 Copynumber: 1.9 Consensus size: 106
50701800 TTCTCATCGT
* * * *
50701810 ATCTTAGCAAATTTGCTATCTTGATTATTTATTTATTTCGAGCTTTGTTCTCAATAAAATTCCAT
1 ATCTTAGCAAATTTGCTATCCTGATTATTTATTTAGTTCGAGCTCTGCTCTCAATAAAATTCCAT
*
50701875 CTTGTCCATTGTGATAATCCTTTTCATCTTTTTCATTTTGA
66 CTTGTCCATTGTGATAATACTTTTCATCTTTTTCATTTTGA
* * *
50701916 ATCTTAGCAAAATTTGCTATCCTGATTAATTTCTTT-GTTCAGAGCTCTGCTCTCAATAAGATTT
1 ATCTTAGC-AAATTTGCTATCCTGATT-ATTTATTTAGTTC-GAGCTCTGCTCTCAATAAAATTC
* *
50701980 C-TCCTT-TCCCGTTGTGATAATATTTTTCA
63 CAT-CTTGT-CCATTGTGATAATACTTTTCA
50702009 AGCATTTTCC
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
106 8 0.10
107 22 0.28
108 48 0.62
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.47
Consensus pattern (106 bp):
ATCTTAGCAAATTTGCTATCCTGATTATTTATTTAGTTCGAGCTCTGCTCTCAATAAAATTCCAT
CTTGTCCATTGTGATAATACTTTTCATCTTTTTCATTTTGA
Found at i:50703293 original size:46 final size:46
Alignment explanation
Indices: 50702898--50703294 Score: 587
Period size: 46 Copynumber: 8.6 Consensus size: 46
50702888 GATTAGAAGC
*
50702898 AGCAGATCTTGTCTTCCTGTATTTGACAGCGGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
*
50702944 AGCAGATCTTGTCTTCCTGTATTTGACAGCGGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* * * * * *
50702990 AACAGATTTTATCTTACTGTATTTGGAAACGGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* * *
50703036 AGTAGATCTTGTCTTCTTGTATTTGGCAGCGGAGTAGATCGAATAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* *
50703082 AGCAGATCTTGTCTTCCTGTATTTAGCAGCGGAGTAGATCGTAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
*
50703128 AGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* * * *
50703174 AGCAGATCTTGTCTTCTTGTATTTGACAGTGGAGTAGATCGTAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* *
50703220 AGCATATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
* * *
50703266 AGCAGATATTGTCTTCCTATATCTGGCAG
1 AGCAGATCTTGTCTTCCTGTATTTGGCAG
50703295 TGAAGCAGAT
Statistics
Matches: 312, Mismatches: 39, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 312 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (46 bp):
AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGAT
Found at i:50703456 original size:132 final size:132
Alignment explanation
Indices: 50703296--50703570 Score: 367
Period size: 132 Copynumber: 2.1 Consensus size: 132
50703286 ATCTGGCAGT
* * *
50703296 GAAGCAGATTGAAGCCACCAGTCCTATCTCCCTGAGCAGTAGCAGAGTAGTCTGAAGATTGGAGA
1 GAAGCAGATTGAAGCCACCAGTCCTATCTCCCTGAGCAGAAGCAGAGTAGGCTGAAGATTGCAGA
* ** ** * * *
50703361 TCTTGTCTCCCTAAACAGTAGTGGAACATG-TGGAAGACGGTGAATCTTATCTTCCTAAGGTAGT
66 TCCTGTCTCCCTAAACAGTAGTGGAACA-GATCAAAGACAATGAATCTTATCTTCCCAAGGAAAT
50703425 AGG
130 AGG
* * *
50703428 GAAGCAGATTTAAGCCACTAG-CCTTATCTCCCTGAGCAGAAGCGGAGTAGGCTGAAGATTGCAG
1 GAAGCAGATTGAAGCCACCAGTCC-TATCTCCCTGAGCAGAAGCAGAGTAGGCTGAAGATTGCAG
*
50703492 ATCCTGTCTCCCTAAGCAGTAGTGGAACAGATCAAAGACAATGAATCTTATCTTCCCAAGGAAAT
65 ATCCTGTCTCCCTAAACAGTAGTGGAACAGATCAAAGACAATGAATCTTATCTTCCCAAGGAAAT
50703557 AGG
130 AGG
50703560 GAA-CTAGATTG
1 GAAGC-AGATTG
50703571 GATCAAACCT
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
131 4 0.03
132 120 0.97
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (132 bp):
GAAGCAGATTGAAGCCACCAGTCCTATCTCCCTGAGCAGAAGCAGAGTAGGCTGAAGATTGCAGA
TCCTGTCTCCCTAAACAGTAGTGGAACAGATCAAAGACAATGAATCTTATCTTCCCAAGGAAATA
GG
Found at i:50709894 original size:9 final size:9
Alignment explanation
Indices: 50709868--50709919 Score: 70
Period size: 9 Copynumber: 5.6 Consensus size: 9
50709858 TATAAGAAAT
50709868 TAATTCGGG
1 TAATTCGGG
50709877 TAATTTTCGGG
1 TAA--TTCGGG
50709888 TAATTCGGG
1 TAATTCGGG
50709897 TAAATT-GGG
1 T-AATTCGGG
50709906 TAATTCGGG
1 TAATTCGGG
50709915 TAATT
1 TAATT
50709920 TTTAACCAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
8 4 0.10
9 22 0.56
10 4 0.10
11 9 0.23
ACGTcount: A:0.25, C:0.08, G:0.29, T:0.38
Consensus pattern (9 bp):
TAATTCGGG
Found at i:50709908 original size:18 final size:20
Alignment explanation
Indices: 50709868--50709918 Score: 79
Period size: 18 Copynumber: 2.6 Consensus size: 20
50709858 TATAAGAAAT
*
50709868 TAATTCGGGTAATTTTCGGG
1 TAATTCGGGTAATATTCGGG
50709888 TAATTCGGGTAA-ATT-GGG
1 TAATTCGGGTAATATTCGGG
50709906 TAATTCGGGTAAT
1 TAATTCGGGTAAT
50709919 TTTTAACCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 15 0.52
19 2 0.07
20 12 0.41
ACGTcount: A:0.25, C:0.08, G:0.29, T:0.37
Consensus pattern (20 bp):
TAATTCGGGTAATATTCGGG
Found at i:50717810 original size:69 final size:68
Alignment explanation
Indices: 50717584--50717832 Score: 277
Period size: 69 Copynumber: 3.6 Consensus size: 68
50717574 ATTATATCAT
* * ** * *
50717584 CCTACAATTACATACAAAAAGTTATATTACTCCACCATTACATCCAATTACACATACAAAAAGTG
1 CCTACAATTACATACAAAAAGTTATATTAGTCTACCACCACA-CCATTTACACATAAAAAAAGTG
50717649 ACAA
65 ACAA
* * * *
50717653 CCTACAATTACATATAAAAAGTGATATTAGCCTACCACCACACCTATTTACACATAGAAAAAGTG
1 CCTACAATTACATACAAAAAGTTATATTAGTCTACCACCACACC-ATTTACACATAAAAAAAGTG
*
50717718 TCAA
65 ACAA
* *
50717722 CCTACAATTACATATAAAAAGTTATATTAGTTTACCACCACACGCATTTACACATAAAAAAAGTG
1 CCTACAATTACATACAAAAAGTTATATTAGTCTACCACCACAC-CATTTACACATAAAAAAAGTG
50717787 ACAA
65 ACAA
** ** *
50717791 CCCT-TTATGGCATACAAAAAGTTATATTCA-TCCACCACCACA
1 -CCTACAATTACATACAAAAAGTTATATT-AGTCTACCACCACA
50717833 ACCACATGGG
Statistics
Matches: 154, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
68 2 0.01
69 147 0.95
70 5 0.03
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.25
Consensus pattern (68 bp):
CCTACAATTACATACAAAAAGTTATATTAGTCTACCACCACACCATTTACACATAAAAAAAGTGA
CAA
Found at i:50717832 original size:138 final size:138
Alignment explanation
Indices: 50717584--50717832 Score: 315
Period size: 138 Copynumber: 1.8 Consensus size: 138
50717574 ATTATATCAT
** *
50717584 CCTACAATTACATACAAAAAGTTATATTACTCCACCATTACATCCAATTACACATACAAAAAGTG
1 CCTACAATTACATACAAAAAGTTATATTACTCCACCACCACATCCAATTACACATAAAAAAAGTG
* *
50717649 ACAACCTACAATTACATATAAAAAGTGATATTAGCCTACCACCACACCTATTTACACATAGAAAA
66 ACAACCTACAATGACATACAAAAAGTGATATTAGCCTACCACCACACCTATTTACACATAGAAAA
50717714 AGTGTCAA
131 AGTGTCAA
* * ** *
50717722 CCTACAATTACATATAAAAAGTTATATTAGTTTACCACCACA-CGCATTTACACATAAAAAAAGT
1 CCTACAATTACATACAAAAAGTTATATTACTCCACCACCACATC-CAATTACACATAAAAAAAGT
** * * *
50717786 GACAACCCT-TTATGGCATACAAAAAGTTATATTCATCC-ACCACCACA
65 GACAA-CCTACAATGACATACAAAAAGTGATATT-AGCCTACCACCACA
50717833 ACCACATGGG
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
137 1 0.01
138 86 0.92
139 6 0.06
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.25
Consensus pattern (138 bp):
CCTACAATTACATACAAAAAGTTATATTACTCCACCACCACATCCAATTACACATAAAAAAAGTG
ACAACCTACAATGACATACAAAAAGTGATATTAGCCTACCACCACACCTATTTACACATAGAAAA
AGTGTCAA
Found at i:50724744 original size:17 final size:18
Alignment explanation
Indices: 50724712--50724745 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50724702 AATTTCTTTT
50724712 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
50724730 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
50724746 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:50725384 original size:30 final size:32
Alignment explanation
Indices: 50725350--50725419 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 32
50725340 TGTCATGTTT
50725350 TAATATAAATATCT-TTTACTT-AATAATAAA
1 TAATATAAATATCTATTTACTTAAATAATAAA
*
50725380 T-A-ATAAATATCTATTTACTTAAATAATAAG
1 TAATATAAATATCTATTTACTTAAATAATAAA
*
50725410 TAATTTAAAT
1 TAATATAAAT
50725420 CCATGAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 10 0.29
29 8 0.24
30 10 0.29
31 1 0.03
32 5 0.15
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (32 bp):
TAATATAAATATCTATTTACTTAAATAATAAA
Found at i:50729886 original size:18 final size:18
Alignment explanation
Indices: 50729863--50729908 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
50729853 CGAAACGATT
50729863 GCAGCAGCAACGATAGTA
1 GCAGCAGCAACGATAGTA
50729881 GCAGCAGCAACGATAGTA
1 GCAGCAGCAACGATAGTA
*
50729899 GCATCAGCAA
1 GCAGCAGCAA
50729909 GCACGTCCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.39, C:0.24, G:0.26, T:0.11
Consensus pattern (18 bp):
GCAGCAGCAACGATAGTA
Found at i:50731866 original size:17 final size:18
Alignment explanation
Indices: 50731833--50731869 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
50731823 TCAATTCTAA
50731833 TTTTACCCAAAATATTTT
1 TTTTACCCAAAATATTTT
*
50731851 TTTTACTCAAAA-ATTTT
1 TTTTACCCAAAATATTTT
50731868 TT
1 TT
50731870 AAAACCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTACCCAAAATATTTT
Found at i:50733124 original size:23 final size:23
Alignment explanation
Indices: 50733073--50733125 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
50733063 TTGCCACGTT
*
50733073 GGGACG-TGGCCTTCGCATCATC
1 GGGACGATGGCCGTCGCATCATC
**
50733095 GAAACGATGGCCGTCGCATCATC
1 GGGACGATGGCCGTCGCATCATC
50733118 GGGACGAT
1 GGGACGAT
50733126 ATGTGTTTGC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.19
Consensus pattern (23 bp):
GGGACGATGGCCGTCGCATCATC
Found at i:50736539 original size:16 final size:16
Alignment explanation
Indices: 50736499--50736548 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
50736489 TATAATTGGT
50736499 ATGTATTT-TTTTAAA
1 ATGTATTTATTTTAAA
* *
50736514 ATAGT-CTTATTTTATA
1 AT-GTATTTATTTTAAA
50736530 ATGTATTTATTTTTAAA
1 ATGTATTTA-TTTTAAA
50736547 AT
1 AT
50736549 TATAGTATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
15 6 0.22
16 13 0.48
17 8 0.30
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (16 bp):
ATGTATTTATTTTAAA
Found at i:50736572 original size:3 final size:3
Alignment explanation
Indices: 50736564--50736608 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
50736554 TATTCTCCTA
50736564 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
50736609 ATAATCTATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:50738072 original size:26 final size:26
Alignment explanation
Indices: 50738043--50738104 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
50738033 CATCATCTTC
50738043 TTCTTCAGAGCAACTGAAGAAGACGA
1 TTCTTCAGAGCAACTGAAGAAGACGA
*
50738069 TTCTTCAGAGGAACTGAAGAAGACGA
1 TTCTTCAGAGCAACTGAAGAAGACGA
*
50738095 TGCTTCAGAG
1 TTCTTCAGAG
50738105 AAAAAAATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (26 bp):
TTCTTCAGAGCAACTGAAGAAGACGA
Found at i:50739053 original size:10 final size:10
Alignment explanation
Indices: 50739038--50739133 Score: 67
Period size: 10 Copynumber: 9.7 Consensus size: 10
50739028 TTTGTTAAAT
50739038 TTAAAAATTA
1 TTAAAAATTA
50739048 TTAAAAA-TA
1 TTAAAAATTA
50739057 -TAAAAATTTA
1 TTAAAAA-TTA
50739067 TTTAAAAATTA
1 -TTAAAAATTA
*
50739078 TTAAGAATTA
1 TTAAAAATTA
*
50739088 -TAAGAAATAA
1 TTAA-AAATTA
* *
50739098 TAAAAAAGTA
1 TTAAAAATTA
50739108 TGT--AAATTA
1 T-TAAAAATTA
*
50739117 TTAATAATTA
1 TTAAAAATTA
*
50739127 ATAAAAA
1 TTAAAAA
50739134 AGATTTAAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
8 7 0.11
9 11 0.17
10 37 0.56
11 5 0.08
12 6 0.09
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:50739055 original size:18 final size:20
Alignment explanation
Indices: 50739034--50739076 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
50739024 TTTTTTTGTT
50739034 AAATTTAAAAA-TTA-TTAA
1 AAATTTAAAAATTTATTTAA
*
50739052 AAATATAAAAATTTATTTAA
1 AAATTTAAAAATTTATTTAA
50739072 AAATT
1 AAATT
50739077 ATTAAGAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.48
19 3 0.14
20 8 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAATTTAAAAATTTATTTAA
Found at i:50739071 original size:30 final size:32
Alignment explanation
Indices: 50739036--50739095 Score: 97
Period size: 30 Copynumber: 1.9 Consensus size: 32
50739026 TTTTTGTTAA
50739036 ATTTAAAAATTATTAA-AAATATAA-AAATTT
1 ATTTAAAAATTATTAAGAAATATAAGAAATTT
*
50739066 ATTTAAAAATTATTAAGAATTATAAGAAAT
1 ATTTAAAAATTATTAAGAAATATAAGAAAT
50739096 AATAAAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 16 0.59
31 7 0.26
32 4 0.15
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (32 bp):
ATTTAAAAATTATTAAGAAATATAAGAAATTT
Found at i:50739145 original size:30 final size:30
Alignment explanation
Indices: 50739070--50739146 Score: 79
Period size: 30 Copynumber: 2.6 Consensus size: 30
50739060 AAATTTATTT
*
50739070 AAAAATTA-TTAAGAATTATAAGAAATAATA
1 AAAAAGTATTTAA-AATTATAAGAAATAATA
* * *
50739100 AAAAAGTATGT-AAATTATTAATAATTAATA
1 AAAAAGTATTTAAAATTA-TAAGAAATAATA
50739130 AAAAAG-ATTTAAAATTA
1 AAAAAGTATTTAAAATTA
50739147 AAATAATATT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 8 0.21
30 30 0.77
31 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (30 bp):
AAAAAGTATTTAAAATTATAAGAAATAATA
Found at i:50739151 original size:29 final size:30
Alignment explanation
Indices: 50739083--50739153 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
50739073 AATTATTAAG
50739083 AATTATAAGA-AA-TAATAAAAAAGTATGTA
1 AATTATAA-ATAATTAATAAAAAAGTATGTA
* *
50739112 AATTATTAATAATTAATAAAAAAG-ATTTAA
1 AATTATAAATAATTAATAAAAAAGTATGT-A
50739142 AATTA-AAATAAT
1 AATTATAAATAAT
50739154 ATTTTAGGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 1 0.03
29 18 0.50
30 17 0.47
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (30 bp):
AATTATAAATAATTAATAAAAAAGTATGTA
Found at i:50745174 original size:111 final size:111
Alignment explanation
Indices: 50744980--50745201 Score: 444
Period size: 111 Copynumber: 2.0 Consensus size: 111
50744970 CAATACCATG
50744980 CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
1 CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
50745045 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
66 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
50745091 CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
1 CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
50745156 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
66 GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
50745202 TACTTCATCA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (111 bp):
CATGTAGTTGTATTGTTGTATTAAAGTTTGTTAATATGTACAGACATTTAGAAAAAGTAGTGTAT
GTTTATATGGTATACATATATCACTACTCTCTCTCTTAGACAACAA
Found at i:50745560 original size:23 final size:23
Alignment explanation
Indices: 50745534--50745610 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
50745524 TTTTCAATTT
50745534 ATAACGATTAATATTGTAGTTTA
1 ATAACGATTAATATTGTAGTTTA
* * * * *
50745557 ATAATAAGAATGTATTTTTTTCAATTT-
1 AT-A-ACG-AT-TAATATTGT-AGTTTA
50745584 ATAACGATTAATATTGTAGTTTA
1 ATAACGATTAATATTGTAGTTTA
50745607 ATAA
1 ATAA
50745611 TTGAGTATTA
Statistics
Matches: 38, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 3 0.08
25 4 0.11
26 3 0.08
27 8 0.21
28 4 0.11
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.45
Consensus pattern (23 bp):
ATAACGATTAATATTGTAGTTTA
Found at i:50745606 original size:22 final size:22
Alignment explanation
Indices: 50745531--50745606 Score: 53
Period size: 22 Copynumber: 3.2 Consensus size: 22
50745521 TTTTTTTCAA
50745531 TTTATAACGATTAATATTGTAG
1 TTTATAACGATTAATATTGTAG
* * * * *
50745553 TTTAATAATAAGAATGTATTTTTTTCAA
1 TTT-AT-A-ACG-AT-TAATATTGT-AG
50745581 TTTATAACGATTAATATTGTAG
1 TTTATAACGATTAATATTGTAG
50745603 TTTA
1 TTTA
50745607 ATAATTGAGT
Statistics
Matches: 38, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 3 0.08
25 4 0.11
26 3 0.08
27 8 0.21
28 4 0.11
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.49
Consensus pattern (22 bp):
TTTATAACGATTAATATTGTAG
Found at i:50745815 original size:20 final size:20
Alignment explanation
Indices: 50745790--50745829 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50745780 AATATTTTTC
*
50745790 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
50745810 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
50745830 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:50745831 original size:34 final size:35
Alignment explanation
Indices: 50745778--50745844 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
50745768 CAAACACCAG
* *
50745778 AAAATATTTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
50745813 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
50745845 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:50759109 original size:16 final size:15
Alignment explanation
Indices: 50759070--50759111 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
50759060 AACTCAAACA
50759070 ATTTCACTCG-ATTT
1 ATTTCACTCGAATTT
*
50759084 AATTCGACTCGAATTT
1 ATTTC-ACTCGAATTT
50759100 CATTTCACTCGA
1 -ATTTCACTCGA
50759112 CTCGATTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 4 0.17
15 5 0.22
16 10 0.43
17 4 0.17
ACGTcount: A:0.26, C:0.24, G:0.10, T:0.40
Consensus pattern (15 bp):
ATTTCACTCGAATTT
Found at i:50775664 original size:16 final size:15
Alignment explanation
Indices: 50775643--50775684 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
50775633 TTGAATCGAG
50775643 TCGAGTGAAATGAAA
1 TCGAGTGAAATGAAA
*
50775658 TTCGAGTCG-AATTAAA
1 -TCGAGT-GAAATGAAA
50775674 TCGAGTGAAAT
1 TCGAGTGAAAT
50775685 TGTTTGAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 1 0.04
15 9 0.39
16 12 0.52
17 1 0.04
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (15 bp):
TCGAGTGAAATGAAA
Found at i:50786512 original size:30 final size:30
Alignment explanation
Indices: 50786445--50786535 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 30
50786435 TCCATATTTA
* * * *
50786445 TGGAAAATCAAATATATGGGCATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
50786475 T---AAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
50786502 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
50786533 TGG
1 TGG
50786536 CATAATAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
27 23 0.44
30 21 0.40
31 8 0.15
ACGTcount: A:0.43, C:0.08, G:0.23, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:50791165 original size:30 final size:30
Alignment explanation
Indices: 50791098--50791188 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 30
50791088 TCCATATTTA
* *
50791098 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
50791128 T---AAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
50791155 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
50791186 TGG
1 TGG
50791189 CATAATAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
27 25 0.46
30 21 0.39
31 8 0.15
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:50794843 original size:26 final size:25
Alignment explanation
Indices: 50794794--50794843 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
50794784 GTTTATAAAT
*
50794794 TTTCTTTGAGTTTTCTTTTTAAGAA
1 TTTCTTTGAGTTTTCTTTTGAAGAA
50794819 TTTCTGTTGAG-TTTCTTTTAGAAGA
1 TTTCT-TTGAGTTTTCTTTT-GAAGA
50794844 GTTTTAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (25 bp):
TTTCTTTGAGTTTTCTTTTGAAGAA
Found at i:50795407 original size:51 final size:50
Alignment explanation
Indices: 50795315--50795439 Score: 146
Period size: 51 Copynumber: 2.5 Consensus size: 50
50795305 CAAAACACCA
* * * *
50795315 TTTGTGGACAAGTCACCACTGATTTGCAGATAAACTGCCACTTATA-ACACT
1 TTTGTGGACAAGCCACCACTGAATTGCAGATAAACTACCACTAATATA-A-T
** *
50795366 TTTGTGGACAAGCCACCACTGAATTGCAGATTTATTACCACTAATATAAT
1 TTTGTGGACAAGCCACCACTGAATTGCAGATAAACTACCACTAATATAAT
*
50795416 TTTGTGGACATGCCACCACT-AATT
1 TTTGTGGACAAGCCACCACTGAATT
50795440 TGCGGGTATA
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
49 4 0.06
50 20 0.31
51 40 0.62
52 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.31
Consensus pattern (50 bp):
TTTGTGGACAAGCCACCACTGAATTGCAGATAAACTACCACTAATATAAT
Found at i:50800430 original size:19 final size:21
Alignment explanation
Indices: 50800406--50800444 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
50800396 AAAAATAAGA
50800406 AAACTC-AAAGAGAA-TTTAT
1 AAACTCAAAAGAGAAGTTTAT
50800425 AAACTCAAAAGAGAAGTTTA
1 AAACTCAAAAGAGAAGTTTA
50800445 ACAATCATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.23
Consensus pattern (21 bp):
AAACTCAAAAGAGAAGTTTAT
Found at i:50804250 original size:12 final size:13
Alignment explanation
Indices: 50804215--50804243 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
50804205 ATAAAACAAT
50804215 TAAAATAAATAAC
1 TAAAATAAATAAC
50804228 TAAAATAAATAA-
1 TAAAATAAATAAC
50804240 TAAA
1 TAAA
50804244 TCAAATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.25
13 12 0.75
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAAATAAATAAC
Found at i:50814538 original size:17 final size:17
Alignment explanation
Indices: 50814516--50814561 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
50814506 CAATTAATTT
*
50814516 TTTTAAAATATTTATAC
1 TTTTAAAATAATTATAC
* *
50814533 TTTT-AAATAATTCTAT
1 TTTTAAAATAATTATAC
50814549 TTTTAAAATAATT
1 TTTTAAAATAATT
50814562 TTTTGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTTAAAATAATTATAC
Found at i:50815124 original size:14 final size:14
Alignment explanation
Indices: 50815105--50815143 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
50815095 TTGTTTCACT
*
50815105 GAAAATGGCTTCCG
1 GAAAATGACTTCCG
* *
50815119 GAAAATGATTTCTG
1 GAAAATGACTTCCG
50815133 GAAAATGACTT
1 GAAAATGACTT
50815144 ACTTTTTTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (14 bp):
GAAAATGACTTCCG
Found at i:50815752 original size:18 final size:18
Alignment explanation
Indices: 50815714--50815749 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
50815704 TTATTATTTT
*
50815714 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
50815732 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
50815750 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:50816369 original size:69 final size:70
Alignment explanation
Indices: 50816167--50816376 Score: 413
Period size: 70 Copynumber: 3.0 Consensus size: 70
50816157 AAAAAACAAC
50816167 TTATTTTCCTAAATAAAATTAAAAAATCTAAATGTCTAATTAAAAAAAATTGACATATAAACCTT
1 TTATTTTCCTAAATAAAATTAAAAAATCTAAATGTCTAATTAAAAAAAATTGACATATAAACCTT
50816232 ATTTA
66 ATTTA
50816237 TTATTTTCCTAAATAAAATTAAAAAATCTAAATGTCTAATTAAAAAAAATTGACATATAAACCTT
1 TTATTTTCCTAAATAAAATTAAAAAATCTAAATGTCTAATTAAAAAAAATTGACATATAAACCTT
50816302 ATTTA
66 ATTTA
50816307 TTATTTTCCTAAATAAAATTAAAAAATCTAAATGTCTAATT-AAAAAAATTGACATATAAACCTT
1 TTATTTTCCTAAATAAAATTAAAAAATCTAAATGTCTAATTAAAAAAAATTGACATATAAACCTT
50816371 ATTTA
66 ATTTA
50816376 T
1 T
50816377 CCTTAAGTTC
Statistics
Matches: 140, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
69 29 0.21
70 111 0.79
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.38
Consensus pattern (70 bp):
TTATTTTCCTAAATAAAATTAAAAAATCTAAATGTCTAATTAAAAAAAATTGACATATAAACCTT
ATTTA
Found at i:50836401 original size:18 final size:18
Alignment explanation
Indices: 50836378--50836457 Score: 58
Period size: 18 Copynumber: 4.4 Consensus size: 18
50836368 ACCATTATAA
50836378 TATATTTTATATAATATT
1 TATATTTTATATAATATT
* * *
50836396 TATATTTTGTAT-GTAAT
1 TATATTTTATATAATATT
* *
50836413 TAT-TTTTCTATTAAAATT
1 TATATTTTATA-TAATATT
*
50836431 TATTTTATATATATAATA-T
1 TATATT-T-TATATAATATT
50836450 TATATTTT
1 TATATTTT
50836458 TAAATTTTTA
Statistics
Matches: 47, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
16 6 0.13
17 8 0.17
18 17 0.36
19 8 0.17
20 5 0.11
21 3 0.06
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (18 bp):
TATATTTTATATAATATT
Found at i:50837646 original size:20 final size:20
Alignment explanation
Indices: 50837621--50837671 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
50837611 TTTTTTCGAA
50837621 TCAAGTTGAGTGAAATAAAT
1 TCAAGTTGAGTGAAATAAAT
50837641 TCAAGTTGAGTGAAATAAAT
1 TCAAGTTGAGTGAAATAAAT
*
50837661 TCGAGTTGAGT
1 TCAAGTTGAGT
50837672 TGAATCGAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.31
Consensus pattern (20 bp):
TCAAGTTGAGTGAAATAAAT
Done.