Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 20 of 189
Found at i:6440091 original size:10 final size:10
Alignment explanation
Indices: 6440076--6440184 Score: 61
Period size: 10 Copynumber: 11.4 Consensus size: 10
6440066 CCATAACATA
6440076 TTTATAATAT
1 TTTATAATAT
*
6440086 TTTATAATAA
1 TTTATAATAT
* *
6440096 TTAATAGT-T
1 TTTATAATAT
6440105 TTTAT-ATAT
1 TTTATAATAT
*
6440114 TTT-TAAAAT
1 TTTATAATAT
* *
6440123 CTTATGATAT
1 TTTATAATAT
*
6440133 TTAATAAT-T
1 TTTATAATAT
6440142 TTTATAGAT-T
1 TTTATA-ATAT
*
6440152 TTCTATCAT-T
1 TT-TATAATAT
* *
6440162 TTCA-AAAAT
1 TTTATAATAT
6440171 TTTATAATAT
1 TTTATAATAT
6440181 TTTA
1 TTTA
6440185 ATAACTTTTA
Statistics
Matches: 72, Mismatches: 20, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
8 3 0.04
9 24 0.33
10 42 0.58
11 3 0.04
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.56
Consensus pattern (10 bp):
TTTATAATAT
Found at i:6440114 original size:37 final size:37
Alignment explanation
Indices: 6440073--6440152 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 37
6440063 TTTCCATAAC
* * *
6440073 ATATTTATAATATTTTATAATAATTAATAGTTTTTAT
1 ATATTTATAAAATCTTATAATAATTAATAATTTTTAT
* * *
6440110 ATATTTTTAAAATCTTATGATATTTAATAATTTTTAT
1 ATATTTATAAAATCTTATAATAATTAATAATTTTTAT
*
6440147 AGATTT
1 ATATTT
6440153 TCTATCATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (37 bp):
ATATTTATAAAATCTTATAATAATTAATAATTTTTAT
Found at i:6440134 original size:47 final size:48
Alignment explanation
Indices: 6440077--6440184 Score: 121
Period size: 47 Copynumber: 2.3 Consensus size: 48
6440067 CATAACATAT
* *
6440077 TTATAATATTTTATAATAATTAATAGTTTTTATAT-ATTTT-TAAAATC
1 TTATAATATTTTATAAT-ATTAATAGATTTTATATCATTTTCAAAAATC
* * * * * *
6440124 TTATGATATTTAATAATTTTTATAGATTTTCTATCATTTTCAAAAATT
1 TTATAATATTTTATAATATTAATAGATTTTATATCATTTTCAAAAATC
6440172 TTATAATATTTTA
1 TTATAATATTTTA
6440185 ATAACTTTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
46 13 0.27
47 20 0.41
48 16 0.33
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.56
Consensus pattern (48 bp):
TTATAATATTTTATAATATTAATAGATTTTATATCATTTTCAAAAATC
Found at i:6440146 original size:19 final size:18
Alignment explanation
Indices: 6440073--6440152 Score: 58
Period size: 19 Copynumber: 4.3 Consensus size: 18
6440063 TTTCCATAAC
6440073 ATATTT-ATAATATTTTAT
1 ATATTTAATAAT-TTTTAT
* *
6440091 AATAATTAATAGTTTTTAT
1 -ATATTTAATAATTTTTAT
*
6440110 ATATTTTTAA-AA-TCTTAT
1 ATA--TTTAATAATTTTTAT
6440128 GATATTTAATAATTTTTAT
1 -ATATTTAATAATTTTTAT
*
6440147 AGATTT
1 ATATTT
6440153 TCTATCATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
17 5 0.10
18 15 0.31
19 20 0.42
20 8 0.17
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (18 bp):
ATATTTAATAATTTTTAT
Found at i:6440380 original size:36 final size:35
Alignment explanation
Indices: 6440330--6440400 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
6440320 CCTAAAATAG
* *
6440330 TTTAAAAAAATCAATTAAATCCTCTTAAAATAATT
1 TTTAAAAAAATCAATTAAACCCTCATAAAATAATT
*
6440365 TTTATAAAAAGTCAATTAAACCCTCATAAAATAATT
1 TTTA-AAAAAATCAATTAAACCCTCATAAAATAATT
6440401 AAAAAATCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 4 0.12
36 28 0.88
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.35
Consensus pattern (35 bp):
TTTAAAAAAATCAATTAAACCCTCATAAAATAATT
Found at i:6441057 original size:12 final size:12
Alignment explanation
Indices: 6441036--6441070 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
6441026 AAAATGCTGA
*
6441036 AATCAAAATCAT
1 AATCAGAATCAT
*
6441048 CATCAGAATCAT
1 AATCAGAATCAT
6441060 AATCAGAATCA
1 AATCAGAATCA
6441071 CTTACTAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.51, C:0.20, G:0.06, T:0.23
Consensus pattern (12 bp):
AATCAGAATCAT
Found at i:6450228 original size:19 final size:19
Alignment explanation
Indices: 6450199--6450237 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
6450189 TAGGTGTAAA
*
6450199 ATAATATTTATGATTTTTTT
1 ATAATATTTAT-ATATTTTT
6450219 ATAA-ATTTATATATTTTT
1 ATAATATTTATATATTTTT
6450237 A
1 A
6450238 ATTTCAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 6 0.33
20 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
ATAATATTTATATATTTTT
Found at i:6450944 original size:21 final size:21
Alignment explanation
Indices: 6450920--6450960 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
6450910 CATAAAGTAA
*
6450920 AAGCACATCTTTAAATAGCAG
1 AAGCACATCATTAAATAGCAG
6450941 AAGCACATCATTAAATAGCA
1 AAGCACATCATTAAATAGCA
6450961 AACTCTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.46, C:0.20, G:0.12, T:0.22
Consensus pattern (21 bp):
AAGCACATCATTAAATAGCAG
Found at i:6453377 original size:58 final size:58
Alignment explanation
Indices: 6453275--6453394 Score: 127
Period size: 58 Copynumber: 2.1 Consensus size: 58
6453265 CTTGATCTTA
* * **
6453275 GCAACTTTTTCCACATTGGAGTCTGAACTATTTTTACCCGAGTTAGGCCC-AGAACTTG
1 GCAACTTTTTCCACATTGGAGCCTGAACTATTTTTACCCAAGTTAAACCCTA-AACTTG
* * * **
6453333 GCAAC-TTTTCTCATATTGGTGCCTGAACTTTTTTTATTCAAGTTAAACCCTAAACTTG
1 GCAACTTTTTC-CACATTGGAGCCTGAACTATTTTTACCCAAGTTAAACCCTAAACTTG
6453391 GCAA
1 GCAA
6453395 TGGTTCCCAC
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
57 5 0.10
58 45 0.88
59 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.36
Consensus pattern (58 bp):
GCAACTTTTTCCACATTGGAGCCTGAACTATTTTTACCCAAGTTAAACCCTAAACTTG
Found at i:6454949 original size:18 final size:19
Alignment explanation
Indices: 6454928--6454963 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
6454918 TTTGAAATTC
6454928 TTCATCTCT-CAATTCTAT
1 TTCATCTCTGCAATTCTAT
*
6454946 TTCATCTTTGCAATTCTA
1 TTCATCTCTGCAATTCTA
6454964 CAGAAAGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.25, G:0.03, T:0.50
Consensus pattern (19 bp):
TTCATCTCTGCAATTCTAT
Found at i:6457897 original size:134 final size:129
Alignment explanation
Indices: 6457691--6458020 Score: 409
Period size: 134 Copynumber: 2.5 Consensus size: 129
6457681 TTCAGTCTTT
* * *
6457691 AATTGAACTGAAAGAACACAAAAAGCAAATG-CTGTGCAGTTTGCCAATAGCTAAGAACAGTAAA
1 AATTGAACTGAAAGAACACAAAAAGCAAA-GACTGT--AGTTTGCAAAGAGCTAAGAACAG-CAA
6457755 ATCAACAAAAGGAG-CAATCAATAAAAATCAAACAATACAAAAAAAAAAGTAAAAACAGACAAAC
62 ATCAACAAAAGG-GTCAATCAATAAAAATCAAACAATAC---AAAAAAAGTAAAAACAGACAAAC
*
6457819 CCGTTTA
123 CCATTTA
* *
6457826 AATTTGAACTGAAAGAACACAAAAATCAAAGACTGTAATTTGCAAAGAGCTAAGAACAGCAGAAT
1 AA-TTGAACTGAAAGAACACAAAAAGCAAAGACTGTAGTTTGCAAAGAGCTAAGAACAGCA-AAT
* * * *
6457891 CAACAAAAGGGTCAGTCAATAAGAATCAAACAGTACAGAAAAAGTAAAAACAGACAAACCCATTT
64 CAACAAAAGGGTCAATCAATAAAAATCAAACAATACAAAAAAAGTAAAAACAGACAAACCCATTT
*
6457956 T
129 A
* *
6457957 AATTGAACTGAAAGAACAC-GAAAGCAAAGACTGTAGTTT--AAAGAACTAAGAACAGCTAAATC
1 AATTGAACTGAAAGAACACAAAAAGCAAAGACTGTAGTTTGCAAAGAGCTAAGAACAGC-AAATC
6458019 AA
65 AA
6458021 TCAATAAGAA
Statistics
Matches: 175, Mismatches: 15, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
127 22 0.13
128 1 0.01
129 17 0.10
130 17 0.10
131 29 0.17
133 2 0.01
134 54 0.31
135 3 0.02
136 30 0.17
ACGTcount: A:0.53, C:0.16, G:0.15, T:0.16
Consensus pattern (129 bp):
AATTGAACTGAAAGAACACAAAAAGCAAAGACTGTAGTTTGCAAAGAGCTAAGAACAGCAAATCA
ACAAAAGGGTCAATCAATAAAAATCAAACAATACAAAAAAAGTAAAAACAGACAAACCCATTTA
Found at i:6458061 original size:130 final size:130
Alignment explanation
Indices: 6457693--6458061 Score: 340
Period size: 134 Copynumber: 2.8 Consensus size: 130
6457683 CAGTCTTTAA
* * * * * *
6457693 TTGAACTGAAAGAACACAAAAAGCAAATG-CTGTGCAGTTTGCCAATAGCTAAGAACAGTAAAAT
1 TTGAACTGAAAGAACACAAAAAGCAAA-GACTGT--AATTT-CAAAGAACTAAGAACAGCAGAAT
* * * *
6457757 CAACAAAAGGAGCAATCAATAA-AAATCAAACAATACAAAAAAAAAAGTAAAAACAGACAAACCC
62 CAACAAAAGAATCAATCAATAAGAAA-CAAAC-A-A-AACAGAAAAAGTAAAAACAGACAAACCC
*
6457821 GTTTAAAT
123 ATTTAAAT
* *
6457829 TTGAACTGAAAGAACACAAAAATCAAAGACTGTAATTTGCAAAGAGCTAAGAACAGCAGAATCAA
1 TTGAACTGAAAGAACACAAAAAGCAAAGACTGTAATTT-CAAAGAACTAAGAACAGCAGAATCAA
** * * ** *
6457894 CAAAAGGGTCAGTCAATAAGAATCAAACAGTACAGAAAAAGTAAAAACAGACAAACCCATTTTAA
65 CAAAAGAATCAATCAATAAGAAACAAACAAAACAGAAAAAGTAAAAACAGACAAACCCATTTAAA
6457959 -
130 T
* *
6457959 TTGAACTGAAAGAACAC-GAAAGCAAAGACTGTAGTTT-AAAGAACTAAGAACAGCTA-AATCAA
1 TTGAACTGAAAGAACACAAAAAGCAAAGACTGTAATTTCAAAGAACTAAGAACAGC-AGAATCAA
*
6458021 TCAATAAGAATCAAAT-AGTAAAGAAACTAAA-AAAACAGAAA
65 -CAA-AAGAATC-AATCAAT-AAGAAAC-AAACAAAACAGAAA
6458062 GAAACCCATT
Statistics
Matches: 198, Mismatches: 27, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
127 22 0.11
128 4 0.02
129 24 0.12
130 33 0.17
131 33 0.17
133 1 0.01
134 48 0.24
135 3 0.02
136 30 0.15
ACGTcount: A:0.54, C:0.15, G:0.14, T:0.16
Consensus pattern (130 bp):
TTGAACTGAAAGAACACAAAAAGCAAAGACTGTAATTTCAAAGAACTAAGAACAGCAGAATCAAC
AAAAGAATCAATCAATAAGAAACAAACAAAACAGAAAAAGTAAAAACAGACAAACCCATTTAAAT
Found at i:6461637 original size:52 final size:52
Alignment explanation
Indices: 6461580--6461686 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
6461570 AAAATAAAAA
* *
6461580 GTTTGTAATTTAAACATTTGTGTTATATAATTTGGTCTTTTTTGTCACTATC
1 GTTTGTAATTTAAACATTTGTGTTATATAATTTGATCATTTTTGTCACTATC
6461632 GTTTGTAATTTAAACATTTGTGTTATATAATTTGATCATTTTTGTCACTATC
1 GTTTGTAATTTAAACATTTGTGTTATATAATTTGATCATTTTTGTCACTATC
6461684 GTT
1 GTT
6461687 AAAATTACAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.53
Consensus pattern (52 bp):
GTTTGTAATTTAAACATTTGTGTTATATAATTTGATCATTTTTGTCACTATC
Found at i:6462453 original size:17 final size:16
Alignment explanation
Indices: 6462431--6462464 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6462421 AAAATTAAAA
*
6462431 AATATTTATTTTATTTT
1 AATATTTA-ATTATTTT
6462448 AATATTTAATTATTTT
1 AATATTTAATTATTTT
6462464 A
1 A
6462465 TACATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
AATATTTAATTATTTT
Found at i:6464081 original size:18 final size:17
Alignment explanation
Indices: 6464041--6464074 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
6464031 TATGTGATAG
6464041 AAATTAAATAATATATA
1 AAATTAAATAATATATA
6464058 AAATTAACATAATATAT
1 AAATTAA-ATAATATAT
6464075 TATATTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
AAATTAAATAATATATA
Found at i:6465703 original size:17 final size:17
Alignment explanation
Indices: 6465683--6465718 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
6465673 TAGAATGATC
*
6465683 ATAAATTTAATTTTAAA
1 ATAAATTTAATATTAAA
*
6465700 ATAATTTTAATATTAAA
1 ATAAATTTAATATTAAA
6465717 AT
1 AT
6465719 TTTGTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATAAATTTAATATTAAA
Found at i:6470075 original size:18 final size:18
Alignment explanation
Indices: 6470052--6470086 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
6470042 AAGCTCTTTG
6470052 GCTAACAATTTCTATCAA
1 GCTAACAATTTCTATCAA
6470070 GCTAACAATTTCTATCA
1 GCTAACAATTTCTATCA
6470087 TTGATCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (18 bp):
GCTAACAATTTCTATCAA
Found at i:6470454 original size:46 final size:46
Alignment explanation
Indices: 6470401--6470490 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
6470391 ATGACCGTAA
* *
6470401 TCTTTTAGTTTATATAAAAATTTAAAGCCGATGGTTCTTGCTTTAG
1 TCTTTTAGATTATATAAAAATTTAAAGACGATGGTTCTTGCTTTAG
6470447 TCTTTTAGATTATATAAAAATTTAAAGACGATGGTTCTTGCTTT
1 TCTTTTAGATTATATAAAAATTTAAAGACGATGGTTCTTGCTTT
6470491 TGTTGCTATA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.30, C:0.10, G:0.14, T:0.46
Consensus pattern (46 bp):
TCTTTTAGATTATATAAAAATTTAAAGACGATGGTTCTTGCTTTAG
Found at i:6470918 original size:19 final size:20
Alignment explanation
Indices: 6470875--6470914 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
6470865 TTATTTTCGT
6470875 AATTTTTATCATGTTTTATA
1 AATTTTTATCATGTTTTATA
*
6470895 TATTTTTAT-ATGTTTT-TA
1 AATTTTTATCATGTTTTATA
6470913 AA
1 AA
6470915 ATTTGTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
18 3 0.17
19 7 0.39
20 8 0.44
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (20 bp):
AATTTTTATCATGTTTTATA
Found at i:6475801 original size:15 final size:15
Alignment explanation
Indices: 6475778--6475808 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6475768 AGGGTTTGAC
6475778 TCAAATACATCAGTG
1 TCAAATACATCAGTG
*
6475793 TCAACTACATCAGTG
1 TCAAATACATCAGTG
6475808 T
1 T
6475809 TTGAAGATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (15 bp):
TCAAATACATCAGTG
Found at i:6479553 original size:27 final size:27
Alignment explanation
Indices: 6479500--6479551 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
6479490 TATTAGTTAC
* * *
6479500 TTGAATTAATTACTGTTTTTATCAAAT
1 TTGAATTAATTACTGATATTATAAAAT
6479527 TTGAATTAATTA-TGATATTATAAAA
1 TTGAATTAATTACTGATATTATAAAA
6479552 ATAGGGATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (27 bp):
TTGAATTAATTACTGATATTATAAAAT
Found at i:6493473 original size:19 final size:20
Alignment explanation
Indices: 6493436--6493474 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
6493426 AGACTTTATC
6493436 TAATAAACCATTGAAAAAAT
1 TAATAAACCATTGAAAAAAT
6493456 TAATAAACCATT-AAAAAAT
1 TAATAAACCATTGAAAAAAT
6493475 ATTTTCAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.26
Consensus pattern (20 bp):
TAATAAACCATTGAAAAAAT
Found at i:6508974 original size:30 final size:30
Alignment explanation
Indices: 6508903--6508983 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 30
6508893 GGTTGAACAC
* * * * **
6508903 TGGGTCGGGTGACTGTGTCGGTGCTGTTGC
1 TGGGTCGGGTGATTGTATGGGTGCTGATAA
* *
6508933 TGGGCCTGGTGATTGTATGGGTGCTGATAA
1 TGGGTCGGGTGATTGTATGGGTGCTGATAA
*
6508963 TGGGTCGGGTGATTGTCTGGG
1 TGGGTCGGGTGATTGTATGGG
6508984 CCTCGTTGAT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.09, C:0.12, G:0.46, T:0.33
Consensus pattern (30 bp):
TGGGTCGGGTGATTGTATGGGTGCTGATAA
Found at i:6510622 original size:14 final size:15
Alignment explanation
Indices: 6510605--6510634 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6510595 TTTACGATCT
6510605 AAAA-AAAATTCAAA
1 AAAATAAAATTCAAA
6510619 AAAATAAAATTCAAA
1 AAAATAAAATTCAAA
6510634 A
1 A
6510635 CTTTTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAATAAAATTCAAA
Found at i:6510741 original size:10 final size:10
Alignment explanation
Indices: 6510676--6510752 Score: 100
Period size: 11 Copynumber: 7.2 Consensus size: 10
6510666 TTTTAAAAAT
6510676 AATTTGAGAGG
1 AATTTGAGA-G
6510687 AATTTGAGAAG
1 AATTTGAG-AG
6510698 AATTTGAGAAG
1 AATTTGAG-AG
6510709 AATTTGAGAG
1 AATTTGAGAG
6510719 AATATTAGAGAG
1 AAT-TT-GAGAG
*
6510731 AATTTGGGAG
1 AATTTGAGAG
6510741 AATTTGAGAG
1 AATTTGAGAG
6510751 AA
1 AA
6510753 AGGATTAAGT
Statistics
Matches: 61, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
10 20 0.33
11 32 0.52
12 9 0.15
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (10 bp):
AATTTGAGAG
Found at i:6512925 original size:60 final size:59
Alignment explanation
Indices: 6512859--6512989 Score: 140
Period size: 60 Copynumber: 2.2 Consensus size: 59
6512849 AGCCAGCTAG
* * *
6512859 TGACCAAACAAGACAAAATT-GAATAGTTGGGTGACTATTTTGTAACTTTTCATAGTTGGA
1 TGACCAAA-AA-ACAAAATTAGAATAGTTGAGTGACCATTTTATAACTTTTCATAGTTGGA
* * * *
6512919 TGACCAAAAAAGAAATTTACTAATAGTTGAGTGACCATTTTATAACTTTTCATGGTT-GA
1 TGACCAAAAAACAAAATTA-GAATAGTTGAGTGACCATTTTATAACTTTTCATAGTTGGA
*
6512978 CTGACAAAAAAA
1 -TGACCAAAAAA
6512990 AACCCATAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
58 6 0.10
59 4 0.07
60 50 0.83
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (59 bp):
TGACCAAAAAACAAAATTAGAATAGTTGAGTGACCATTTTATAACTTTTCATAGTTGGA
Found at i:6518378 original size:41 final size:41
Alignment explanation
Indices: 6518333--6518414 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
6518323 TATGAGACTT
*
6518333 GTACTGAAAGATATTTAATTTTTAGTAAATAATGGATAGAG
1 GTACTGAAAGATATTTAATTTTTAGTAAATAAGGGATAGAG
6518374 GTACTGAAAGATATTTAATTTTTAGTAAATAAGGGATAGAG
1 GTACTGAAAGATATTTAATTTTTAGTAAATAAGGGATAGAG
6518415 CTGCCTAGCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.41, C:0.02, G:0.21, T:0.35
Consensus pattern (41 bp):
GTACTGAAAGATATTTAATTTTTAGTAAATAAGGGATAGAG
Found at i:6527376 original size:262 final size:263
Alignment explanation
Indices: 6526657--6528758 Score: 1445
Period size: 262 Copynumber: 8.0 Consensus size: 263
6526647 ACTAAACACA
* * * ** ** **
6526657 GCTAACCGATAACTAAAGCCCCTTAAAAGGCCCCATTGACACCATTCAGGAAGAAGTCAAACACG
1 GCTAA-CGATAACTAAAACCCCTTAAAAAGCTCCATTGACACTGTTCAACAAGAAGTCAAATTCG
* * * ** * * *
6526722 AGCACCTAGTCTATCAAGTTAATTCCTCCATCACTCAAACCAGTCAATCTCACCGATGTTATCC-
65 AGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAAAG-TATCCT
* * * *
6526786 ATAT-GGCTACTAGTTACATATGCAGAGTCAACAC--AGTATTTCAC----A---AGCAAAGAAA
129 ACATAAGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAGCAAAGAAA
* * * *
6526841 CAGAGGAAACACAATTAATAGTTTACTAAACTCACCAAGAGGCTT-AACTCCCCTCC-ATTGACA
194 CAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGATGATTGAACTCCCCTCCAATTGACA
***
6526904 CATGGC
258 CACAAC
* * * * * *
6526910 GCTAACCGATAACTAACACCCCTTAAAAGGATCCATTGACACCGTTGAACAAGAAGTCAAATTCA
1 GCTAA-CGATAACTAAAACCCCTTAAAAAGCTCCATTGACACTGTTCAACAAGAAGTCAAATTCG
* * * *
6526975 AGCACCTAGTCTCTAAAGTCAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATCCT
65 AGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAAAG-TATCCT
** *
6527040 ACATGGGCTACAACTTAAATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAGCAAAGAAA
129 ACATAAGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAGCAAAGAAA
* *
6527105 CAAAGGAAACACGATTACTAGTTCACAGAACTCACC-A-A-GATTGAACT-CCCTCCAATTGACA
194 CAGAGGAAACACAATTACTAGTTCACA-AACTCACCAAGATGATTGAACTCCCCTCCAATTGACA
*
6527166 CACAAT
258 CACAAC
* * * * *
6527172 GCTAACTGATAACAAAAACCCCCTTAAAAGGCTCCTTTGACACTGTTCAACAATAAGTCAAATTT
1 GCTAAC-GATAACTAAAA-CCCCTTAAAAAGCTCCATTGACACTGTTCAACAAGAAGTCAAATTC
* * * *
6527237 GAGCGTCC-AGTCTATTGAGTTAATTCTTCCTTTTCTCAAACTAGTCAATCTCATCAAAGTATCC
64 GAGC-ACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAAAGTATCC
* * ** * * * **
6527301 TATATAAGC-AGCTACTGCCATATGCAAAGTCAACAGAAAGTATTTCCCAT-TCAGTTAGGGAAG
128 TACATAAGCTA-CAACTTACATATGCAGAGTCAACACAAAGTATTTCACATAT-AGTTAGCAAAG
* *
6527364 AAACAGAGGAAACACAATTAAC-AGTTCACTAAACTCACCGAGATGATTGAACT-CCCT-GATCA
191 AAACAGAGGAAACACAATT-ACTAGTTCAC-AAACTCACCAAGATGATTGAACTCCCCTCCA--A
6527426 TTGACACACAAC
252 TTGACACACAAC
* * * * * *
6527438 GCAAAGCCATAA-TAAAACCCCTTAAAAAGCCCCATTGACACCGCTCAACATGAAGTCAAATTCG
1 GCTAA-CGATAACTAAAACCCCTTAAAAAGCTCCATTGACACTGTTCAACAAGAAGTCAAATTCG
* * * ** *
6527502 AGCACCTAGTCT-CTAAGGTCAAATTCTTCCCTCACTCAAACTAGTCAATCTCACCAATGTCATC
65 AGCACCTAGTCTATTAA-GT-TAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAAAGT-ATC
** *
6527566 CTACATGGGCTACAACTTACATATGCAGAGTCAACACAAGGTATTTCACATATAGTTAGCAAAGA
127 CTACATAAGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAGCAAAGA
* *
6527631 AAC--A--AAAGA-AA--ACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCAATTGA
192 AACAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGATGATTGAACTCCCCTCCAATTGA
*
6527689 CACACAAT
256 CACACAAC
* * *
6527697 GCTAACAGATAACTAAAA-CCCTTAAAAACCTCCATTGAGACTGCTCAACAAGAAGTCAAA-TCT
1 GCTAAC-GATAACTAAAACCCCTTAAAAAGCTCCATTGACACTGTTCAACAAGAAGTCAAATTC-
* *
6527760 GAGCACCTAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTCATCAACA-TATCC
64 GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAA-AGTATCC
* * * * * * * * * * **
6527824 CAGATAAGCTACTACTTCCGTATGCATAGTCAACAGAAAGAATTTCCCATTTAGTTAGTGAAGAA
128 TACATAAGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAGCAAAGAA
* *
6527889 ACAGGGGAAACACAATTAAC-AGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCC-ATTG-
193 ACAGAGGAAACACAATT-ACTAGTTCAC-AAACTCACCAAGATGATTGAACTCCCCTCCAATTGA
*
6527951 -ATACAAC
256 CACACAAC
* * * *
6527958 ACTAACGCATAATTAAAACCCCTTAAAAATCTCCATTGACACT-TCTCAACAAGAAGTCAAATTG
1 GCTAACG-ATAACTAAAACCCCTTAAAAAGCTCCATTGACACTGT-TCAACAAGAAGTCAAATTC
* * * * *
6528022 GAGCACATAGTCTACTAAGCTAATTCTTCCATTGCTCAAACTAGTCAATCACACCAAAATGCCAA
64 GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACC-AAA-G----
* * * * * **
6528087 ATTATCCTACAT--G-GACTACTTACACATGCAGAGTCAACAC--AGTATTTCACACACAACTAG
123 --TATCCTACATAAGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAG
* * * *
6528147 CAGAGAAACAGAGGAAACACAATTAATAATTCACTAAACTCACCAAGAAGATTGAACTCCCCTCC
186 CAAAGAAACAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGATGATTGAACTCCCCTCC
* * *
6528212 -ATTGAAACAAAAT
250 AATTGACACACAAC
* * * * *
6528225 GCTAACCGATAATTAAAACCCCTT-AAAAGGTGCCATGGACACTGTTCAAGAACAAGTCAAATTC
1 GCTAA-CGATAACTAAAACCCCTTAAAAAGCT-CCATTGACACTGTTCAACAAGAAGTCAAATTC
* * * * *
6528289 AAGCACCTAGTGGTCCTAGTCT-A-CTAAGTTTTTCCTTTGCTCAAACT-GTTCAATCACATCAA
64 GAGCACCTA---GT-CTA-T-TAAGTTAA-TTCTTCCTTTGCTCAAACTAG-TCAATCTCACCAA
* * ** * * * * * ***
6528351 TTGGCTAATCCTATATGGGTTACTACTTACATATACAGAGCCAACACCAAGTATTTCACACGCAG
121 --AG-T-ATCCTACATAAGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAG
* ** * * * * * * * *
6528416 CTAGTGAAGAATCAGAGGAAACACGATTAATAATTCACTAAACTCGCCAAGAGGACTGAATTCCC
182 TTAGCAAAGAAACAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGATGATTGAACTCCC
* **
6528481 CTCC-ATTGACACATAGT
246 CTCCAATTGACACACAAC
* * * * * * ** * * *
6528498 GCTAGCTGATAATTAAAACCTCTT-ATAGGCGCCATTGACACCATTCAAGAAGAAGTCAATTTCA
1 GCTAAC-GATAACTAAAACCCCTTAAAAAGCTCCATTGACACTGTTCAACAAGAAGTCAAATTCG
* ** * * * *
6528562 AGCACCAGCTGGTCCTAGTCT-A-TTAAGGTT-TTGATTTGCTCAAACAAGTCGACCACACCAAT
65 AGCA-C--CTAGT-CTA-T-TAAGTTAA--TTCTTCCTTTGCTCAAACTAGTCAATCTCACCAA-
* * * ** * * * * *
6528624 GGGTTAATCTTAAATGAAG-TATTACTCACACATGCAGAGTCCATACAAAATATTTCACATATAG
121 -AG-T-ATCCTACAT-AAGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAG
* * ** * * *
6528688 CTAGCTAAGAAACAGAGGAAACACAACCAATAGTTCACTAAAACTCACCAAGAGGATTGAACTCT
182 TTAGCAAAGAAACAGAGGAAACACAATTACTAGTTCAC--AAACTCACCAAGATGATTGAACTCC
6528753 CCTCCA
245 CCTCCA
6528759 TAGCCATCAA
Statistics
Matches: 1493, Mismatches: 263, Indels: 165
0.78 0.14 0.09
Matches are distributed among these distances:
253 109 0.07
254 3 0.00
255 27 0.02
257 66 0.04
258 37 0.02
259 100 0.07
260 13 0.01
261 39 0.03
262 205 0.14
263 104 0.07
264 130 0.09
265 125 0.08
266 80 0.05
267 82 0.05
268 12 0.01
270 11 0.01
271 33 0.02
272 175 0.12
273 140 0.09
275 2 0.00
ACGTcount: A:0.37, C:0.25, G:0.13, T:0.24
Consensus pattern (263 bp):
GCTAACGATAACTAAAACCCCTTAAAAAGCTCCATTGACACTGTTCAACAAGAAGTCAAATTCGA
GCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAAAGTATCCTAC
ATAAGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAGCAAAGAAACA
GAGGAAACACAATTACTAGTTCACAAACTCACCAAGATGATTGAACTCCCCTCCAATTGACACAC
AAC
Found at i:6527912 original size:523 final size:521
Alignment explanation
Indices: 6526835--6528252 Score: 1733
Period size: 523 Copynumber: 2.7 Consensus size: 521
6526825 TTCACAAGCA
* * * *
6526835 AAGAAACAGAGGAAACACAATTAATAGTTTACTAAACTCACCAAGAGGCTT-AACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGATGATTGAACTCCCCTCCAT
*** * * * * *
6526899 TGACACATGGCGCTAACCGATAACTAACACCCCTTAAAAGGATCCATTGACACCGTTGAACAAGA
66 TGACACACAACGCTAACC-ATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGA
* *
6526964 AGTCAAATTCAAGCACCTAGTCTCTAAAGTCAATTCTTCCTTTGCTCAAACTAGTCAATCTCACC
130 AGTCAAATTCGAGCACCTAGTCTCT-AAGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACC
*
6527029 AATGTTATCCTACATGGGCTACAACTTAAATATGCAGAGTCAACACAAAGTATTTCACATATAGT
194 AATGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACAC-AAGTATTTCACATATAGT
*
6527094 TAGCAAAGAAACAAAGGAAACACGATTACTAGTTCACAGAACTCACC-A-AGATTGAACT-CCCT
258 TAGCAAAGAAACAAA--AAACA--A-TACTAGTTCACAAAACTCACCAAGAGATTGAACTCCCCT
* * ** * *
6527156 CCAATTGACACACAATGCTAACTGATAACAAAAACCCCCTTAAAAGGCTCCTTTGACACTGTTCA
318 CCAATTGACACACAATGCTAACAGATAACTAAAA-CCCCTTAAAAACCTCCATTGACACTGCTCA
* * * * * *
6527221 ACAATAAGTCAAATTTGAGCGTCCAGTCTATTGAGTTAATTCTTCCTTTTCTCAAACTAGTCAAT
382 ACAAGAAGTCAAATCTGAGCGACCAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAAT
* * *
6527286 CTCATCAAAGTATCCTATATAAGCAGCTACTGCCATATGCAAAGTCAACAGAAAGTATTTCCCAT
447 CTCATCAAAGTATCCCAGATAAGCAGCTACTGCCATATGCAAAGTCAACAGAAAGAATTTCCCAT
6527351 TCAGTTAGGG
512 TCAGTTAGGG
* *
6527361 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCGAGATGATTGAACT-CCCTGATC
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGATGATTGAACTCCCCT--CC
* * *
6527425 ATTGACACACAACGCAAAGCCATAA-TAAAACCCCTTAAAAAGCCCCATTGACACCGCTCAACAT
64 ATTGACACACAACGCTAA-CCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAA
* **
6527489 GAAGTCAAATTCGAGCACCTAGTCTCTAAGGTCAAATTCTTCCCTCACTCAAACTAGTCAATCTC
128 GAAGTCAAATTCGAGCACCTAGTCTCTAA-GTC-AATTCTTCCATTGCTCAAACTAGTCAATCTC
*
6527554 ACCAATGTCATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAGGTATTTCACATAT
191 ACCAATGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAA-GTATTTCACATAT
*
6527619 AGTTAGCAAAGAAACAAAAGA-AA-ACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTC
255 AGTTAGCAAAGAAACAAAAAACAATACTAGTTCACAAAACTCACCAAGA-GATTGAACTCCCCTC
*
6527682 CAATTGACACACAATGCTAACAGATAACTAAAA-CCCTTAAAAACCTCCATTGAGACTGCTCAAC
319 CAATTGACACACAATGCTAACAGATAACTAAAACCCCTTAAAAACCTCCATTGACACTGCTCAAC
6527746 AAGAAGTCAAATCTGAGC-ACCTAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATC
384 AAGAAGTCAAATCTGAGCGACC-AGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATC
* * *
6527810 TCATCAACA-TATCCCAGATAAGCTA-CTACTTCCGTATGCATAGTCAACAGAAAGAATTTCCCA
448 TCATCAA-AGTATCCCAGATAAGC-AGCTACTGCCATATGCAAAGTCAACAGAAAGAATTTCCCA
* *
6527873 TTTAGTTAGTG
511 TTCAGTTAGGG
* *
6527884 AAGAAACAGGGGAAACACAATTAACAGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGATGATTGAACTCCCCTCCAT
* * * * **
6527949 TG--ATACAACACTAACGCATAATTAAAACCCCTTAAAAATCTCCATTGACACTTCTCAACAAGA
66 TGACACACAACGCTAAC-CATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGA
* * *
6528012 AGTCAAATTGGAGCACATAGTCTACTAAG-CTAATTCTTCCATTGCTCAAACTAGTCAATCACAC
130 AGTCAAATTCGAGCACCTAGTCT-CTAAGTC-AATTCTTCCATTGCTCAAACTAGTCAATCTCAC
* *
6528076 CAAAATGCCAAATTATCCTACAT-GG--ACTACTTACACATGCAGAGTCAACAC-AGTATTTCAC
193 C--AATG-----TTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAGTATTTCAC
* * ** * * * *
6528137 ACACAACTAGCAGAGAAACAGAGGAAACACAATTAATAATTCACTAAACTCACCAAGAAGATTGA
251 ATATAGTTAGCAAAGAAACA-A--AAA-ACAA-TACTAGTTCACAAAACTCACCAAG-AGATTGA
* * * *
6528202 ACTCCCCTCC-ATTGAAACAAAATGCTAACCGATAATTAAAACCCCTTAAAA
310 ACTCCCCTCCAATTGACACACAATGCTAACAGATAACTAAAACCCCTTAAAA
6528253 GGTGCCATGG
Statistics
Matches: 777, Mismatches: 81, Indels: 65
0.84 0.09 0.07
Matches are distributed among these distances:
519 1 0.00
520 45 0.06
521 77 0.10
522 40 0.05
523 200 0.26
524 39 0.05
525 39 0.05
526 57 0.07
527 79 0.10
528 152 0.20
529 47 0.06
530 1 0.00
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (521 bp):
AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGATGATTGAACTCCCCTCCAT
TGACACACAACGCTAACCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGAA
GTCAAATTCGAGCACCTAGTCTCTAAGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACCAA
TGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAGTATTTCACATATAGTTAG
CAAAGAAACAAAAAACAATACTAGTTCACAAAACTCACCAAGAGATTGAACTCCCCTCCAATTGA
CACACAATGCTAACAGATAACTAAAACCCCTTAAAAACCTCCATTGACACTGCTCAACAAGAAGT
CAAATCTGAGCGACCAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTCATCAAA
GTATCCCAGATAAGCAGCTACTGCCATATGCAAAGTCAACAGAAAGAATTTCCCATTCAGTTAGG
G
Found at i:6528706 original size:272 final size:272
Alignment explanation
Indices: 6527884--6528759 Score: 778
Period size: 272 Copynumber: 3.2 Consensus size: 272
6527874 TTAGTTAGTG
* * * * *
6527884 AAGAAACAGGGGAAACACAATTAACAGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAATAATTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCAT
* * ** * * * *
6527949 TGATACAACA--CTAA-CGCATAATTAAAACCCCTTAAAAATCTCCATTGACA-CTTCTCAACAA
66 TGAAACAAAATGCTAACCG-ATAATTAAAACCCCTTAAAAGGCGCCATGGACACCAT-TCAAGAA
* ** *
6528010 GAAGTCAAATTGGAGCA-C-A-TAGT-CTA--CTAAGCTAA--TTCTTCCA-TTGCTCAAACTAG
129 CAAGTCAAATTCAAGCACCTAGTGGTCCTAGTCT-A-CTAAGGTT-TT-CATTTGCTCAAAC-AG
* * * *
6528066 -TCAATCACACCAAAAT-GCCAAATTATCCTACATG-G--ACTACTTACACATGCAGAGT-CAAC
189 TTCAACCACACC--AATGGGC---TAATCCTAAATGAGTTACTACTTACACATGCAGAGTCCAAC
* *
6528125 ACAGTATTTCACACACAACTAGC-
249 AAAGTATTTCACACACAGCTAGCT
*
6528148 AGAGAAACAGAGGAAACACAATTAATAATTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCA
1 A-AGAAACAGAGGAAACACAATTAATAATTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCA
* **
6528213 TTGAAACAAAATGCTAACCGATAATTAAAACCCCTTAAAAGGTGCCATGGACACTGTTCAAGAAC
65 TTGAAACAAAATGCTAACCGATAATTAAAACCCCTTAAAAGGCGCCATGGACACCATTCAAGAAC
* * * *
6528278 AAGTCAAATTCAAGCACCTAGTGGTCCTAGTCTACTAAGTTTTTCCTTTGCTCAAACTGTTCAAT
130 AAGTCAAATTCAAGCACCTAGTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAGTTCAAC
* * * * * *
6528343 CACATCAATTGGCTAATCCTATATGGGTTACTACTTACATATACAGAG-CCAACACCAAGTATTT
195 CACACCAATGGGCTAATCCTAAATGAGTTACTACTTACACATGCAGAGTCCAACA--AAGTATTT
*
6528407 CACACGCAGCTAG-T
258 CACACACAGCTAGCT
* * * * *
6528421 GAAGAATCAGAGGAAACACGATTAATAATTCACTAAACTCGCCAAGAGGACTGAATTCCCCTCCA
1 -AAGAAACAGAGGAAACACAATTAATAATTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCA
* * * * * * * * *
6528486 TTGACACATAGTGCTAGCTGATAATTAAAACCTCTT-ATAGGCGCCATTGACACCATTCAAGAAG
65 TTGAAACAAAATGCTAACCGATAATTAAAACCCCTTAAAAGGCGCCATGGACACCATTCAAGAAC
* * * *
6528550 AAGTCAATTTCAAGCACC-AGCTGGTCCTAGTCTATTAAGGTTTTGATTTGCTCAAACAAG-TCG
130 AAGTCAAATTCAAGCACCTAG-TGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAAC-AGTTCA
* * * * *
6528613 ACCACACCAATGGGTTAATCTTAAATGAAG-TATTACTCACACATGCAGAGTCCATACAAAATAT
193 ACCACACCAATGGGCTAATCCTAAATG-AGTTACTACTTACACATGCAGAGTCCA-ACAAAGTAT
* *
6528677 TTCACATATAGCTAGCT
256 TTCACACACAGCTAGCT
** * *
6528694 AAGAAACAGAGGAAACACAACCAATAGTTCACTAAAACTCACCAAGAGGATTGAACTCTCCTCCA
1 AAGAAACAGAGGAAACACAATTAATAATTCACT-AAACTCACCAAGAGGATTGAACTCCCCTCCA
6528759 T
65 T
6528760 AGCCATCAAG
Statistics
Matches: 502, Mismatches: 79, Indels: 53
0.79 0.12 0.08
Matches are distributed among these distances:
264 1 0.00
265 67 0.13
267 52 0.10
268 14 0.03
269 2 0.00
270 6 0.01
271 35 0.07
272 178 0.35
273 143 0.28
274 4 0.01
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (272 bp):
AAGAAACAGAGGAAACACAATTAATAATTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCAT
TGAAACAAAATGCTAACCGATAATTAAAACCCCTTAAAAGGCGCCATGGACACCATTCAAGAACA
AGTCAAATTCAAGCACCTAGTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAGTTCAACC
ACACCAATGGGCTAATCCTAAATGAGTTACTACTTACACATGCAGAGTCCAACAAAGTATTTCAC
ACACAGCTAGCT
Found at i:6530672 original size:21 final size:20
Alignment explanation
Indices: 6530629--6530691 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
6530619 TTAAAATATT
*
6530629 AAAAAATTTATAAAAACGTA
1 AAAAAATTTATAAAAACATA
6530649 AAAAAATTCTATAAAAA-ATA
1 AAAAAATT-TATAAAAACATA
*
6530669 AAAATA-TTA-AAAAATCATA
1 AAAAAATTTATAAAAA-CATA
6530688 AAAA
1 AAAA
6530692 GACCAAATCA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.13
18 2 0.05
19 8 0.21
20 15 0.39
21 8 0.21
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.24
Consensus pattern (20 bp):
AAAAAATTTATAAAAACATA
Found at i:6531289 original size:37 final size:36
Alignment explanation
Indices: 6531212--6531300 Score: 105
Period size: 37 Copynumber: 2.5 Consensus size: 36
6531202 ATTTTATATT
6531212 TTTTATAA--TTTATAATTTATTTGATTTTTTTGTA
1 TTTTATAATGTTTATAATTTATTTGATTTTTTTGTA
*
6531246 TTTTATAATGTTTATAAGTTT-TTT-ATTTTTTTCTTA
1 TTTTATAATGTTTATAA-TTTATTTGATTTTTTT-GTA
*
6531282 TTCTTATAATGTTTTTAAT
1 TT-TTATAATGTTTATAAT
6531301 GATTTTATGG
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
34 8 0.17
35 8 0.17
36 15 0.31
37 17 0.35
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (36 bp):
TTTTATAATGTTTATAATTTATTTGATTTTTTTGTA
Found at i:6537396 original size:16 final size:16
Alignment explanation
Indices: 6537375--6537405 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6537365 TTTATAAGTT
*
6537375 TATAATGTTCCAAATC
1 TATAATATTCCAAATC
6537391 TATAATATTCCAAAT
1 TATAATATTCCAAAT
6537406 TCATAGTAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (16 bp):
TATAATATTCCAAATC
Found at i:6541652 original size:5 final size:5
Alignment explanation
Indices: 6541642--6541679 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
6541632 TACCAGCACG
6541642 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CAT
6541680 TTCCTAACCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (5 bp):
CATAT
Found at i:6544141 original size:16 final size:16
Alignment explanation
Indices: 6544120--6544152 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6544110 GCAGACGCAA
6544120 AGCAGCATAGCACCAT
1 AGCAGCATAGCACCAT
6544136 AGCAGCATAGCACCAT
1 AGCAGCATAGCACCAT
6544152 A
1 A
6544153 AGTCAATCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.30, G:0.18, T:0.12
Consensus pattern (16 bp):
AGCAGCATAGCACCAT
Found at i:6545447 original size:254 final size:254
Alignment explanation
Indices: 6545022--6545858 Score: 890
Period size: 254 Copynumber: 3.2 Consensus size: 254
6545012 AAGCATGTTT
* *
6545022 AATTGGAATAAACAATTAATTAAATAAATCTCGAGTT-GCAGCGAAAAAAACTTCAAAAGCAACG
1 AATTGGAATAAACAATTAATTAAAGAAATCTCGA-TTAGCA--GTAAAAAACTTCAAAAGCAACG
* * *
6545086 GAGAGAAACCAGTAAAATGCAATGCAATCTCGTCAACTAAGTATTACACTGTTTTTGGCTGAACT
63 GAGAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGGATGAACT
* * * * *
6545151 ATGTTAAACTTGAATAAACAGCTAATTAAAAAAATCTTGATTAGCAGTGAAC-AAAAAGAATCAA
128 ATGTTCAATTTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAACAAAAAAGAAGCAA
* * * *
6545215 AAGAAAAATGCAAT-TAATCACATATGACTAAGTATTACACTGTTTTCTGTTGAACTAAGGTC
193 AAGAAAAATGCAATAAAATCACAT-CGACTAAGTATTACACTGTTATCTGATGAACTAAGGTC
* *
6545277 AATTGGAATTAACAATTAATTGAAGAAATCTCGATTAGCAGTAAAAGAACTTCAAAAGCAACGGA
1 AATTGGAATAAACAATTAATTAAAGAAATCTCGATTAGCAGTAAAA-AACTTCAAAAGCAACGGA
6545342 GAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGGATGAACTAT
65 GAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGGATGAACTAT
6545407 GTTCAATTTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGCAAAAAAACAAAAAAAGA
130 GTTCAATTTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTG------AAC-AAAAAAGA
* **
6545472 AGCAAAAGCAAAATGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAATT
188 AGCAAAAGAAAAATGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGG
6545537 TC
253 TC
* * * * * *
6545539 AATTGGAATAAACAACTAATCAAAGAAATCTTGTATTAGCATTGAAAAACAATCAAAAGCAAATT
1 AATTGGAATAAACAATTAATTAAAGAAATCTCG-ATTAGCAGTAAAAAAC-TTCAAAAGC-AA--
* * * * ** * * * * *
6545604 AGAAAAAAAAAAAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCT-GATGG
61 CGGAGAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTT-TTTGGATGA
* * *
6545668 ACTAAGTTCAATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGTGAAAAACAATCAA
125 ACTATGTTCAATTTGAATAAACAACTAATTAAAGAAATCTT-GATTAGCAGTG---AACAA--AA
* * *
6545733 AAGCAAATTAGAAAAAGAAAAACAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGT
184 AAG---A--AGCAAAAG------A--AAAATGCAATAAAATCACATCGACTAAGTATTACACTGT
*
6545798 TATCTGATGAACTAAGTTC
236 TATCTGATGAACTAAGGTC
* * * *
6545817 AATTCGAATAAACAATTAATTAAACAAATCTTGAGTAGCAGT
1 AATTGGAATAAACAATTAATTAAAGAAATCTCGATTAGCAGT
6545859 TTAAAAAAAA
Statistics
Matches: 497, Mismatches: 52, Indels: 44
0.84 0.09 0.07
Matches are distributed among these distances:
253 5 0.01
254 125 0.25
255 34 0.07
260 3 0.01
262 88 0.18
263 29 0.06
264 8 0.02
265 5 0.01
266 88 0.18
267 13 0.03
268 1 0.00
270 7 0.01
277 7 0.01
278 84 0.17
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.25
Consensus pattern (254 bp):
AATTGGAATAAACAATTAATTAAAGAAATCTCGATTAGCAGTAAAAAACTTCAAAAGCAACGGAG
AGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGGATGAACTATG
TTCAATTTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAACAAAAAAGAAGCAAAAG
AAAAATGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGGTC
Found at i:6545617 original size:138 final size:139
Alignment explanation
Indices: 6545465--6545858 Score: 639
Period size: 138 Copynumber: 2.8 Consensus size: 139
6545455 AAAAAAACAA
* * *
6545465 AAAAAGAAGCAAAAGCAAAATGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGA
1 AAAAAGAA--AAAAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGA
* * *
6545530 ACTAATTTCAATTGGAATAAACAACTAATCAAAGAAATCTTGTATTAGCATTGAAAAACAATCAA
64 ACTAAGTTCAATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGTGAAAAACAATCAA
6545595 AAGCAAATTAG
129 AAGCAAATTAG
*
6545606 AAAAA-AAAAAAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGGAC
1 AAAAAGAAAAAAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAAC
6545670 TAAGTTCAATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGTGAAAAACAATCAAAA
66 TAAGTTCAATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGTGAAAAACAATCAAAA
6545735 GCAAATTAG
131 GCAAATTAG
6545744 AAAAAGAAAAACAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAA
1 AAAAAGAAAAA-AGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAA
* * * * *
6545809 CTAAGTTCAATTCGAATAAACAATTAATTAAACAAATCTT-GAGTAGCAGT
65 CTAAGTTCAATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGT
6545859 TTAAAAAAAA
Statistics
Matches: 238, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
138 129 0.54
139 14 0.06
140 90 0.38
141 5 0.02
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.24
Consensus pattern (139 bp):
AAAAAGAAAAAAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAAC
TAAGTTCAATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGTGAAAAACAATCAAAA
GCAAATTAG
Found at i:6545830 original size:140 final size:138
Alignment explanation
Indices: 6545475--6545909 Score: 638
Period size: 138 Copynumber: 3.1 Consensus size: 138
6545465 AAAAAGAAGC
* * * *
6545475 AAAAGCAAAATGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAATTTCA
1 AAAAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCA
* *
6545540 ATTGGAATAAACAACTAATCAAAGAAATCTTGTATTAGCATTGAAAAACAATCAAAAGCAAATTA
66 ATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGTGAAAAACAATCAAAAGCAAATTA
6545605 GAAAAAAA
131 GAAAAAAA
*
6545613 AAAAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGGACTAAGTTCA
1 AAAAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCA
6545678 ATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGTGAAAAACAATCAAAAGCAAATTA
66 ATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGTGAAAAACAATCAAAAGCAAATTA
6545743 GAAAAAGAA
131 GAAAAA-AA
6545752 AAACAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTC
1 AAA-AGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTC
* * * * * * * *
6545817 AATTCGAATAAACAATTAATTAAACAAATCTT-GAGTAGCAGTTTAAAAAAAAAATTAAAAGCAA
65 AATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAG--T-GAAAAACAATCAAAAGCAA
* * *
6545881 CTGAGAAAACAA
127 ATTAGAAAAAAA
* *
6545893 AACAGTAGAATACAATA
1 AAAAGTAAAATACAATA
6545910 AAAACTCGTC
Statistics
Matches: 271, Mismatches: 21, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
138 129 0.48
139 13 0.05
140 101 0.37
141 5 0.02
142 23 0.08
ACGTcount: A:0.51, C:0.14, G:0.12, T:0.24
Consensus pattern (138 bp):
AAAAGTAAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCA
ATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGCAGTGAAAAACAATCAAAAGCAAATTA
GAAAAAAA
Found at i:6546922 original size:23 final size:24
Alignment explanation
Indices: 6546883--6546931 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
6546873 ATGGTTTTTG
*
6546883 AATATTATTTGATAATATTTC-AA
1 AATATTATTTCATAATATTTCTAA
6546906 AATATT-TTTCATAAATATTTCTAA
1 AATATTATTTCAT-AATATTTCTAA
6546930 AA
1 AA
6546932 ATATATCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 14 0.61
24 4 0.17
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (24 bp):
AATATTATTTCATAATATTTCTAA
Found at i:6560309 original size:22 final size:21
Alignment explanation
Indices: 6560284--6560341 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
6560274 ATACAATCGT
*
6560284 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
6560306 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
6560329 AGA-TTGATTTGTA
1 AGATTTGATTTGTA
6560342 GATACCATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 1 0.03
21 5 0.16
22 10 0.32
23 8 0.26
24 7 0.23
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.43
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:6569729 original size:21 final size:23
Alignment explanation
Indices: 6569689--6569730 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
6569679 CAATACTCGA
*
6569689 TTTTTTTTAATTTTATATTAAAG
1 TTTTTTTTAATTTCATATTAAAG
6569712 TTTTTTTT-ATTTCA-ATTAA
1 TTTTTTTTAATTTCATATTAA
6569731 GTACTCGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 5 0.28
23 8 0.44
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTTTTTAATTTCATATTAAAG
Found at i:6573985 original size:22 final size:23
Alignment explanation
Indices: 6573960--6574006 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 23
6573950 AAAGAGTTTG
6573960 TTTTTGAT-AAAAAT-ACATAAAA
1 TTTTT-ATAAAAAATGACATAAAA
6573982 -TTTTATAAAAAATGACATAAAA
1 TTTTTATAAAAAATGACATAAAA
6574004 TTT
1 TTT
6574007 ATTTATTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
20 2 0.09
21 10 0.45
22 8 0.36
23 2 0.09
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (23 bp):
TTTTTATAAAAAATGACATAAAA
Found at i:6575219 original size:31 final size:31
Alignment explanation
Indices: 6575184--6575243 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
6575174 CACTGCACTA
6575184 AAAAATTATG-ATGTTAATCTCTATACTTTAC
1 AAAAATTATGAAT-TTAATCTCTATACTTTAC
* *
6575215 AAAAATTATGAATTTAGTCTCTGTACTTT
1 AAAAATTATGAATTTAATCTCTATACTTT
6575244 GATTTGATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (31 bp):
AAAAATTATGAATTTAATCTCTATACTTTAC
Found at i:6588668 original size:17 final size:18
Alignment explanation
Indices: 6588646--6588682 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
6588636 AAAATTTTTT
6588646 AAAATAAAAATA-TATTA
1 AAAATAAAAATAGTATTA
*
6588663 AAAATAAAAGTAGTATTA
1 AAAATAAAAATAGTATTA
6588681 AA
1 AA
6588683 TCAATTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (18 bp):
AAAATAAAAATAGTATTA
Found at i:6589892 original size:31 final size:29
Alignment explanation
Indices: 6589833--6589892 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
6589823 TTTAGATGTA
*
6589833 ACATTGAACATTTTCAAAATCTAGATACC
1 ACATTGAACATTTTCAAAATATAGATACC
*
6589862 ACATTGAACATTTTACAAAAATATATATACC
1 ACATTGAACATTTT-C-AAAATATAGATACC
6589893 GTAATAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 14 0.52
30 1 0.04
31 12 0.44
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (29 bp):
ACATTGAACATTTTCAAAATATAGATACC
Found at i:6590347 original size:27 final size:27
Alignment explanation
Indices: 6590297--6590366 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
6590287 AAAAATAAAA
*
6590297 ATTTACCAAAATATTATAACTTTTTTT
1 ATTTACCAAAAAATTATAACTTTTTTT
6590324 ATTTACCAAAAAATATATAA-TTTTTTT
1 ATTTACCAAAAAAT-TATAACTTTTTTT
*
6590351 ATTTACCAAAATATTA
1 ATTTACCAAAAAATTA
6590367 AAAAAGAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
26 2 0.05
27 33 0.82
28 5 0.12
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (27 bp):
ATTTACCAAAAAATTATAACTTTTTTT
Found at i:6590465 original size:27 final size:27
Alignment explanation
Indices: 6590435--6590501 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
6590425 CGCCAATGAG
6590435 ATTGGCGGCACCAAAGGTGCCAAAACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
* *
6590462 ATTGGCGGCACCAATGGTGCCAATACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
6590489 ATTGGCGGCACCA
1 ATTGGCGGCACCA
6590502 CTTAATAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAACC
Found at i:6590554 original size:4 final size:4
Alignment explanation
Indices: 6590545--6590692 Score: 108
Period size: 4 Copynumber: 36.0 Consensus size: 4
6590535 GAAGGAGAGG
* * *
6590545 GAAA GAAA GAAA GAAA GAAG GAAA GAAA GAAA GGAGAG GAAA GAAA AAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA GAAA
* * * *
6590595 AAAA GAAG GAAA GAAAA GGAAA G-GA GAAGA GAAA AAAA GAAA GAAA G-AA
1 GAAA GAAA GAAA G-AAA -GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA
*
6590644 G-AA G-AA GAAAA GGAAAA GAGAA GAAA -AAA GAAA GAAA GAAG GAAA
1 GAAA GAAA G-AAA -G-AAA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA
6590689 GAAA
1 GAAA
6590693 AGGAAAGGAG
Statistics
Matches: 119, Mismatches: 14, Indels: 22
0.77 0.09 0.14
Matches are distributed among these distances:
3 14 0.12
4 77 0.65
5 21 0.18
6 7 0.06
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:6590570 original size:16 final size:16
Alignment explanation
Indices: 6590549--6590737 Score: 107
Period size: 16 Copynumber: 12.2 Consensus size: 16
6590539 GAGAGGGAAA
6590549 GAAAGAAAGAAAGAAG
1 GAAAGAAAGAAAGAAG
6590565 GAAAGAAAGAAAGGAGAG
1 GAAAGAAAGAAA-GA-AG
* * *
6590583 GAAAGAAAAAAAAAAA
1 GAAAGAAAGAAAGAAG
*
6590599 GAAGGAAAG-AA-AAG
1 GAAAGAAAGAAAGAAG
* *
6590613 GAAAG-GAGAAGAGAAA
1 GAAAGAAAGAA-AGAAG
*
6590629 AAAAGAAAGAAAGAA-
1 GAAAGAAAGAAAGAAG
6590644 G-AAG-AAG-AA-AAG
1 GAAAGAAAGAAAGAAG
*
6590656 GAAA-AGAG-AAGAA-
1 GAAAGAAAGAAAGAAG
*
6590669 AAAAGAAAGAAAGAAG
1 GAAAGAAAGAAAGAAG
*
6590685 GAAAGAAAAGGAAAGGA-
1 GAAAG-AAA-GAAAGAAG
*
6590702 GAAGAGAAAAAAAGAAG
1 GAA-AGAAAGAAAGAAG
* *
6590719 AAGAAG-AAGAGAGAAG
1 GA-AAGAAAGAAAGAAG
6590735 GAA
1 GAA
6590738 GGAAGGGAAA
Statistics
Matches: 132, Mismatches: 23, Indels: 37
0.69 0.12 0.19
Matches are distributed among these distances:
11 2 0.02
12 3 0.02
13 14 0.11
14 15 0.11
15 9 0.07
16 48 0.36
17 19 0.14
18 22 0.17
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GAAAGAAAGAAAGAAG
Found at i:6590587 original size:30 final size:29
Alignment explanation
Indices: 6590545--6590741 Score: 105
Period size: 30 Copynumber: 6.4 Consensus size: 29
6590535 GAAGGAGAGG
*
6590545 GAAA-GAAAGAAAGAAAGAAGGAAAGAAA
1 GAAAGGAAGGAAAGAAAGAAGGAAAGAAA
* ** *
6590573 GAAAGGAGAGGAAAGAAAAAAAAAAAGAAG
1 GAAAGGA-AGGAAAGAAAGAAGGAAAGAAA
* * *
6590603 GAAAGAAAAGGAAAG-GAGAAGAGAAAAAAA
1 GAAAG-GAAGGAAAGAAAGAAG-GAAAGAAA
* * *
6590633 GAAAGAAAGAAGAAGAAGAAAAGGAAAAGAGAA
1 GAAAGGAAGGA-AAGAA-AGAAGG-AAAGA-AA
*
6590666 GAAA--AAAGAAAGAAAGAAGGAAAGAAAA
1 GAAAGGAAGGAAAGAAAGAAGGAAAG-AAA
* *
6590694 GGAAAGGAGAAGAGAAAAAAAGAAGAAGAAGAAGA
1 -GAAA-G-GAAG-GAAAGAAAGAAGGA-AAGAA-A
6590729 GAGAAGGAAGGAA
1 GA-AAGGAAGGAA
6590742 GGGAAAAAAA
Statistics
Matches: 128, Mismatches: 22, Indels: 34
0.70 0.12 0.18
Matches are distributed among these distances:
28 10 0.08
29 20 0.16
30 47 0.37
31 5 0.04
32 11 0.09
33 12 0.09
34 17 0.13
35 6 0.05
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (29 bp):
GAAAGGAAGGAAAGAAAGAAGGAAAGAAA
Found at i:6590590 original size:38 final size:40
Alignment explanation
Indices: 6590536--6590755 Score: 242
Period size: 40 Copynumber: 5.5 Consensus size: 40
6590526 GGGGGGGCAG
*
6590536 AAGGAGAGGGAAAGAAAGAAAGAAAGAAGGAAAG-AAA-GA
1 AAGGAGA-GGAAAAAAAGAAAGAAAGAAGGAAAGAAAAGGA
*
6590575 AAGGAGAGGAAAGAAAA-AAAAAAAGAAGGAAAGAAAAGGA
1 AAGGAGAGGAAA-AAAAGAAAGAAAGAAGGAAAGAAAAGGA
*
6590615 AAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAGAAAAGGA
1 AAGGAG-AG-GAAAAAAAGAAAGAAAGAAGGA-AAGAAAAGGA
* *
6590658 AAAGAGAAG-AAAAAAGAAAGAAAGAAGGAAAGAAAAGGA
1 AAGGAGAGGAAAAAAAGAAAGAAAGAAGGAAAGAAAAGGA
*
6590697 AAGGAGAAGAGAAAAAAAG-AAG-AAGAA-GAAGAGAGAAGG-
1 AAGGAG-AG-GAAAAAAAGAAAGAAAGAAGGAA-AGAAAAGGA
6590736 AAGGA-AGGGAAAAAAAGAAA
1 AAGGAGA-GGAAAAAAAGAAA
6590756 AAAAAAAGTA
Statistics
Matches: 158, Mismatches: 10, Indels: 27
0.81 0.05 0.14
Matches are distributed among these distances:
37 10 0.06
38 23 0.15
39 36 0.23
40 40 0.25
41 11 0.07
42 23 0.15
43 15 0.09
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (40 bp):
AAGGAGAGGAAAAAAAGAAAGAAAGAAGGAAAGAAAAGGA
Found at i:6590645 original size:3 final size:3
Alignment explanation
Indices: 6590639--6590734 Score: 50
Period size: 3 Copynumber: 34.0 Consensus size: 3
6590629 AAAAGAAAGA
6590639 AAG AAG AAG AAG AA- AAGG AA- AAG -AG AAG AA- AA- AAG AAAG AAAG
1 AAG AAG AAG AAG AAG AA-G AAG AAG AAG AAG AAG AAG AAG -AAG -AAG
* * * *
6590682 AAG GA- AAG AA- AAG GA- AAG GAG AAG -AG AA- AAA AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
6590725 AAG AGAG AAG
1 AAG A-AG AAG
6590735 GAAGGAAGGG
Statistics
Matches: 74, Mismatches: 7, Indels: 24
0.70 0.07 0.23
Matches are distributed among these distances:
2 18 0.24
3 44 0.59
4 12 0.16
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:6590660 original size:29 final size:30
Alignment explanation
Indices: 6590546--6590734 Score: 85
Period size: 29 Copynumber: 6.8 Consensus size: 30
6590536 AAGGAGAGGG
*
6590546 AAAGAAAGAAAGAAAGAAGGA-AAG-AAA-G
1 AAAG-AAGAAAGAAAGAAGAAGAAGAAAAGG
* * * * *
6590574 AAAGGAG-AGGAAAGAAAAAAAAAAAGAAGG
1 AAAGAAGAAAGAAAGAAGAAGAAGAA-AAGG
* *
6590604 AAAGAA-AAGGAAAG--G-AGAAGAGAA--
1 AAAGAAGAAAGAAAGAAGAAGAAGAAAAGG
6590628 AAA-AAGAAAGAAAGAAGAAGAAGAAAAGG
1 AAAGAAGAAAGAAAGAAGAAGAAGAAAAGG
* *
6590657 -AA-AAGAGAAGAAAAAAGAAAGAA-AGAAGG
1 AAAGAAGA-AAGAAAGAAG-AAGAAGAAAAGG
* *
6590686 AAAGAA-AAGGAAAGGAGAAG-AGAAAA--
1 AAAGAAGAAAGAAAGAAGAAGAAGAAAAGG
6590712 AAAGAAG-AAG-AAGAAGAGAGAAG
1 AAAGAAGAAAGAAAGAAGA-AGAAG
6590735 GAAGGAAGGG
Statistics
Matches: 122, Mismatches: 20, Indels: 39
0.67 0.11 0.22
Matches are distributed among these distances:
23 2 0.02
24 10 0.08
25 6 0.05
26 22 0.18
27 19 0.16
28 17 0.14
29 23 0.19
30 21 0.17
31 2 0.02
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (30 bp):
AAAGAAGAAAGAAAGAAGAAGAAGAAAAGG
Found at i:6590692 original size:64 final size:64
Alignment explanation
Indices: 6590545--6590693 Score: 160
Period size: 64 Copynumber: 2.3 Consensus size: 64
6590535 GAAGGAGAGG
** * * *
6590545 GAAAGAAAGAAAGAAAGAAGGAAAGAAAGAAAGGAGAGGAAAGAAAAAAAAAAAGAAGGAAAGAA
1 GAAAGAAAG-AAGAAAGAAAAAAAGAAAGAAAGAAGAAGAAAGAAAAAAAAAAAGAAGGAAAAAA
* * * *
6590610 -AAGGAAAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAG-AAGAAAAGGAAAAGAGAA-GAAAAA
1 GAAAGAAAGAAGAA-AGAAAAAAAGAAAGAAAGAAGAAGAAAGAAAA-AAAAAAAGAAGGAAAAA
6590672 A
64 A
6590673 GAAAGAAAGAAGGAAAGAAAA
1 GAAAGAAAGAA-GAAAGAAAA
6590694 GGAAAGGAGA
Statistics
Matches: 69, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
63 17 0.25
64 49 0.71
65 3 0.04
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (64 bp):
GAAAGAAAGAAGAAAGAAAAAAAGAAAGAAAGAAGAAGAAAGAAAAAAAAAAAGAAGGAAAAAA
Found at i:6590700 original size:82 final size:83
Alignment explanation
Indices: 6590536--6590762 Score: 281
Period size: 82 Copynumber: 2.8 Consensus size: 83
6590526 GGGGGGGCAG
* * * * *
6590536 AAGGAG-AGGGAAAGAAAGAAAGAAAGAAGGA-AAG-AAA-GAAAGGAGAGGAAAGAAAAAAAAA
1 AAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAGAAAGAAAAAAAAA
6590597 AAGAAGGAAAGAAAAGGA
66 AAGAAGGAAAGAAAAGGA
* *
6590615 AAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAGAAA-AAAGAAAGA
1 AAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAGAAAGAAAAAAAAA
6590679 AAGAAGGAAAGAAAAGGA
66 AAGAAGGAAAGAAAAGGA
* * *
6590697 AAGGAGAAGAGAAAAAAAG-AAG-AAGAAGAAG-AGAGAAGGAAGGAAGGGAAAAAAAGAAAAAA
1 AAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAGAAAAGGAA--AAGAG-AAGAAAGAAAAAA
6590759 AAAA
63 AAAA
6590763 GTAATTTTAT
Statistics
Matches: 128, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
79 15 0.12
80 31 0.24
81 10 0.08
82 52 0.41
83 20 0.16
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (83 bp):
AAGGAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAGAAAAGGAAAAGAGAAGAAAGAAAAAAAAA
AAGAAGGAAAGAAAAGGA
Found at i:6591913 original size:321 final size:318
Alignment explanation
Indices: 6591553--6592340 Score: 1355
Period size: 321 Copynumber: 2.5 Consensus size: 318
6591543 TATTCCTTCT
* *
6591553 TAACACACTAAATTAATAAATTTCAAAC-TTGATGCACTGAAATAATGTAAAATTATAAAATACT
1 TAACACACTAGAGTAATAAATTTCAAACATT-ATGCACTGAAATAATGTAAAATTATAAAAT--T
**
6591617 A-AGTTTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGT
63 AGAAATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGT
6591681 AAGAGTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAATAAAATG
128 AAGAGTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAA-AAAATG
*
6591746 TACTGAAATAATATAAAACAATAAAATACGAGAATAATATATTTTTGTTTAAAGTAATAAAAATC
192 TACTGAAATAATATAAAACAATAAAATACGAGAATAATATATTTTTATTTAAAGTAATAAAAATC
* *
6591811 GGGAAAATAATACGAGCAAATGGCAGGGGTAAGGGTTATTTTTTTACACCAAATTAATTTAAA
257 GAGAAAATAATACGAGCAAAGGGCAGGGGTAAGGGTTA-TTTTTTACACCAAATTAATTTAAA
6591874 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
1 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
*
6591939 AATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAAATACGAACAAATGGCAAAAGTAA
66 AATTATGATATTTTTTAAAGTAATAAAATGCGGAG-AAAAAAATACGAACAAATGGCAGAAGTAA
*
6592004 GAGTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAAACAATGTAC
130 GAGTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAAAAAATGTAC
6592069 TGAAATAATATAAAACAATAAAATACGAGAATAATATATTTTTATTTAAAGTAATAAAAATCGAG
195 TGAAATAATATAAAACAATAAAATACGAGAATAATATATTTTTATTTAAAGTAATAAAAATCGAG
*
6592134 AAAATAATACGAGCAAAGGGCAGGGGTAAGGGTTATTTTTTACACCAATTTAATTTAAA
260 AAAATAATACGAGCAAAGGGCAGGGGTAAGGGTTATTTTTTACACCAAATTAATTTAAA
*
6592193 TAACATACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
1 TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
* * *
6592258 AATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAATAAATGGCCGAAATAAG
66 AATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAG
* * *
6592323 ATTTTTTTACTAACTTTT
131 AGTGTATTACTAACTTTT
6592341 TTTTCAACTT
Statistics
Matches: 446, Mismatches: 18, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
318 41 0.09
319 124 0.28
320 139 0.31
321 140 0.31
322 2 0.00
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (318 bp):
TAACACACTAGAGTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGA
AATTATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAG
AGTGTATTACTAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAAAAAATGTACT
GAAATAATATAAAACAATAAAATACGAGAATAATATATTTTTATTTAAAGTAATAAAAATCGAGA
AAATAATACGAGCAAAGGGCAGGGGTAAGGGTTATTTTTTACACCAAATTAATTTAAA
Found at i:6592127 original size:161 final size:159
Alignment explanation
Indices: 6591629--6592156 Score: 584
Period size: 161 Copynumber: 3.3 Consensus size: 159
6591619 GTTTATGATA
6591629 TTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTAC
1 TTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTAC
*
6591694 TAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAATAAAATGTACTGAAATAATA
66 TAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAA-ACAATGTACTGAAATAATA
6591759 TAAAACAATAAAATACGAGAATAATATATT
130 TAAAACAATAAAATACGAGAATAATATATT
* * ** *
6591789 TTTGTTTAAAGTAATAAAAAT-CGG-GAAAATAATACGAGCAAATGGCAGGGGTAAGGGT-TATT
1 TTT-TTTAAAGTAAT-AAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATT
* * * * * * *
6591851 --T---TTTTACACCAAATTAATTTAAATAA-CACACTAGAGTAATAAATTTC-AAACATTATGC
64 ACTAACTTTTATA--AAATTCA--GAAATAATTA-A-TACA--AA-ATATTTCAAAACA--ATGT
* ** *
6591909 ACTGAAATAATGTAAAATTATAAAATTA-GA-AAT--TATGATA
118 ACTGAAATAATATAAAACAATAAAA-TACGAGAATAATAT-ATT
*
6591949 TTTTTTAAAGTAATAAAATGCGGAGAAAAAAAATACGAACAAATGGCAAAAGTAAGAGTGTATTA
1 TTTTTTAAAGTAATAAAATGCGGAG-AAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTA
6592014 CTAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAAACAATGTACTGAAATAATA
65 CTAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAAACAATGTACTGAAATAATA
6592079 TAAAACAATAAAATACGAGAATAATATATT
130 TAAAACAATAAAATACGAGAATAATATATT
* * *
6592109 TTTATTTAAAGTAATAAAAAT-C-GAGAAAATAATACGAGCAAAGGGCAG
1 TTT-TTTAAAGTAAT-AAAATGCGGAGAAAAAAATACGAACAAATGGCAG
6592157 GGGTAAGGGT
Statistics
Matches: 298, Mismatches: 38, Indels: 65
0.74 0.09 0.16
Matches are distributed among these distances:
154 6 0.02
156 6 0.02
157 4 0.01
158 39 0.13
159 52 0.17
160 55 0.18
161 63 0.21
162 50 0.17
163 9 0.03
164 2 0.01
165 6 0.02
167 6 0.02
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (159 bp):
TTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTAC
TAACTTTTATAAAATTCAGAAATAATTAATACAAAATATTTCAAAACAATGTACTGAAATAATAT
AAAACAATAAAATACGAGAATAATATATT
Found at i:6592235 original size:161 final size:159
Alignment explanation
Indices: 6591566--6592313 Score: 582
Period size: 159 Copynumber: 4.7 Consensus size: 159
6591556 CACACTAAAT
* ** **
6591566 TAATAAATTTCAAAC-TTGATGCACTGAAATAATGTAAAATTATAAAATACTA-AGTTTATGATA
1 TAATAAATTTCAAACATT-ATGCACTGAAATAATATAAAACAATAAAAT--TAGAAATTATGATA
* ** * **
6591629 TTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTAC
63 TTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAGCAAATGGCAGGGGTAAGGGT-TATTTT
* **** ** * * * *
6591694 TAACTTTTATAAAATTCAGAAATAA-TTAATACA-
127 TTACACCAATTTAATT--TAAATAACATACTAGAG
* * ** *
6591727 -AA-ATATTTCAAATAAAATGTACTGAAATAATATAAAACAATAAAA-TACGAGAATAATAT-AT
1 TAATAAATTTCAAACATTATGCACTGAAATAATATAAAACAATAAAATTA-GA-AAT--TATGAT
* *
6591788 TTTTGTTTAAAGTAATAAAAAT-CGG-GAAAATAATACGAGCAAATGGCAGGGGTAAGGGTTATT
62 ATTT-TTTAAAGTAAT-AAAATGCGGAGAAAAAAATACGAGCAAATGGCAGGGGTAAGGGTTA-T
* *
6591851 TTTTTACACCAAATTAATTTAAATAACACACTAGAG
124 TTTTTACACCAATTTAATTTAAATAACATACTAGAG
* **
6591887 TAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTT
1 TAATAAATTTCAAACATTATGCACTGAAATAATATAAAACAATAAAATTAGAAATTATGATATTT
* *** * ** *
6591952 TTTAAAGTAATAAAATGCGGAGAAAAAAAATACGAACAAATGGCAAAAGTAAGAGTGTATTACTA
66 TTTAAAGTAATAAAATGCGGAG-AAAAAAATACGAGCAAATGGCAGGGGTAAGGGT-TATTTTTT
**** ** * * * *
6592017 ACTTTTATAAAATTCAGAAATAA-TTAATACA-
129 ACACCAATTTAATT--TAAATAACATACTAGAG
* *
6592048 -AA-ATATTTCAAAACA--ATGTACTGAAATAATATAAAACAATAAAA-TACGAGAATAATAT-A
1 TAATAAATTTC-AAACATTATGCACTGAAATAATATAAAACAATAAAATTA-GA-AAT--TATGA
* * *
6592107 TTTTTATTTAAAGTAATAAAAAT-C-GAGAAAATAATACGAGCAAAGGGCAGGGGTAAGGGTTAT
61 TATTT-TTTAAAGTAAT-AAAATGCGGAGAAAAAAATACGAGCAAATGGCAGGGGTAAGGGTTAT
6592170 TTTTTACACCAATTTAATTTAAATAACATACTAGAG
124 TTTTTACACCAATTTAATTTAAATAACATACTAGAG
* **
6592206 TAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTATGATATTT
1 TAATAAATTTCAAACATTATGCACTGAAATAATATAAAACAATAAAATTAGAAATTATGATATTT
**
6592271 TTTAAAGTAATAAAATGCGGAGAAAAAAATACGAATAAATGGC
66 TTTAAAGTAATAAAATGCGGAGAAAAAAATACGAGCAAATGGC
6592314 CGAAATAAGA
Statistics
Matches: 452, Mismatches: 97, Indels: 78
0.72 0.15 0.12
Matches are distributed among these distances:
156 8 0.02
157 12 0.03
158 67 0.15
159 125 0.28
160 76 0.17
161 101 0.22
162 55 0.12
163 8 0.02
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.30
Consensus pattern (159 bp):
TAATAAATTTCAAACATTATGCACTGAAATAATATAAAACAATAAAATTAGAAATTATGATATTT
TTTAAAGTAATAAAATGCGGAGAAAAAAATACGAGCAAATGGCAGGGGTAAGGGTTATTTTTTAC
ACCAATTTAATTTAAATAACATACTAGAG
Found at i:6594780 original size:17 final size:18
Alignment explanation
Indices: 6594742--6594780 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
6594732 TTACTAAGTT
*
6594742 ACATCTTAATACATTAATA
1 ACATCTTAATA-ATTAACA
6594761 ACATCTTAAT-ATTAACA
1 ACATCTTAATAATTAACA
6594778 ACA
1 ACA
6594781 ACAATAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
19 10 0.53
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (18 bp):
ACATCTTAATAATTAACA
Found at i:6595068 original size:27 final size:27
Alignment explanation
Indices: 6595038--6595113 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
6595028 CCAATCAATA
6595038 TGGCACCATTGGTGTCGCCAATGGTAT
1 TGGCACCATTGGTGTCGCCAATGGTAT
* * *
6595065 TGGCACCATTGGTGCCACCAATGGTTT
1 TGGCACCATTGGTGTCGCCAATGGTAT
*
6595092 TGGCACCTTTGGTGTCGCCAAT
1 TGGCACCATTGGTGTCGCCAAT
6595114 CCCATTTGCG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.17, C:0.25, G:0.28, T:0.30
Consensus pattern (27 bp):
TGGCACCATTGGTGTCGCCAATGGTAT
Found at i:6599005 original size:27 final size:27
Alignment explanation
Indices: 6598970--6599038 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
6598960 AAATAAAAAA
*
6598970 TTACCAAAATGT-TATACATTTTTTTAT
1 TTACCAAAATATATATA-ATTTTTTTAT
*
6598997 TTACCAAAAAATATATAATTTTTTTAT
1 TTACCAAAATATATATAATTTTTTTAT
6599024 TTACCAAAATATATA
1 TTACCAAAATATATA
6599039 AAAAAACCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 34 0.89
28 4 0.11
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.46
Consensus pattern (27 bp):
TTACCAAAATATATATAATTTTTTTAT
Found at i:6599123 original size:27 final size:26
Alignment explanation
Indices: 6599092--6599170 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 26
6599082 TTCCCTGGGT
6599092 CAAGGGAACACTGTTGGCGGCACCAAA
1 CAAGGGAAC-CTGTTGGCGGCACCAAA
6599119 CAAGGGAACCTTGTTGGCGGCACCAAA
1 CAAGGGAACC-TGTTGGCGGCACCAAA
**
6599146 CAAGGGTTCCCTGTTGGCGGCACCA
1 CAAGGG-AACCTGTTGGCGGCACCA
6599171 CTCGTGTTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.02
27 45 0.94
28 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.30, T:0.15
Consensus pattern (26 bp):
CAAGGGAACCTGTTGGCGGCACCAAA
Found at i:6599552 original size:61 final size:62
Alignment explanation
Indices: 6599479--6599596 Score: 161
Period size: 63 Copynumber: 1.9 Consensus size: 62
6599469 TATTAAGATG
* *
6599479 TTAGTTAGTATTA-TTGT-TAGTAAAA-AATTAGTATTATTTTTGTAGTTAGTTATTAATAATT
1 TTAGTTAGTATTATTTGTATA-TAAAATAATTAATATTATTATTGT-GTTAGTTATTAATAATT
*
6599540 TTAGTTAGTATTATTTTGTATATAAAATTATTAATATTATTATTGTGTTAGTTATTA
1 TTAGTTAGTATTA-TTTGTATATAAAATAATTAATATTATTATTGTGTTAGTTATTA
6599597 GGATTAGTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
61 13 0.26
63 20 0.40
64 17 0.34
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (62 bp):
TTAGTTAGTATTATTTGTATATAAAATAATTAATATTATTATTGTGTTAGTTATTAATAATT
Found at i:6601365 original size:38 final size:37
Alignment explanation
Indices: 6601317--6601480 Score: 162
Period size: 38 Copynumber: 4.4 Consensus size: 37
6601307 ATTACCTTAT
6601317 TTTCTTTTTTTTCTTTCCTTCCTTCCCTCTT-CTTCTTC
1 TTTCTTTTTTTTCTTTCCTTCCTTCCCT-TTCCTT-TTC
6601355 TTTCTTTTTTTT-TTT-C-T-CTTCTCCTTTCCTTTTC
1 TTTCTTTTTTTTCTTTCCTTCCTTC-CCTTTCCTTTTC
* *
6601389 TTTCCTTATTTTTCTTTCTTTCC-TCCCATTTCCTTTTC
1 TTT-CTTTTTTTTCTTTCCTTCCTTCCC-TTTCCTTTTC
* *
6601427 TTTCCTTCTTTTTCTTTCTTTCC-TCTCCTTTCCTTTTC
1 TTT-CTTTTTTTTCTTTCCTTCCTTC-CCTTTCCTTTTC
*
6601465 CTTCTTTTTCTTTCTT
1 TTTCTTTTT-TTTCTT
6601481 CTTCTTCCCC
Statistics
Matches: 111, Mismatches: 5, Indels: 20
0.82 0.04 0.15
Matches are distributed among these distances:
34 12 0.11
35 15 0.14
36 4 0.04
37 10 0.09
38 67 0.60
39 3 0.03
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (37 bp):
TTTCTTTTTTTTCTTTCCTTCCTTCCCTTTCCTTTTC
Found at i:6601393 original size:10 final size:10
Alignment explanation
Indices: 6601378--6601478 Score: 72
Period size: 10 Copynumber: 10.5 Consensus size: 10
6601368 TTCTCTTCTC
6601378 CTTTCCTTTT
1 CTTTCCTTTT
6601388 CTTTCCTTATT
1 CTTTCCTT-TT
6601399 -TTT-C-TTT
1 CTTTCCTTTT
**
6601406 CTTTCC-TCC
1 CTTTCCTTTT
6601415 CATTTCCTTTT
1 C-TTTCCTTTT
6601426 CTTTCCTTCTT
1 CTTTCCTT-TT
6601437 -TTT-C-TTT
1 CTTTCCTTTT
* *
6601444 CTTTCCTCTC
1 CTTTCCTTTT
6601454 CTTTCCTTTT
1 CTTTCCTTTT
* *
6601464 CCTTCTTTTT
1 CTTTCCTTTT
6601474 CTTTC
1 CTTTC
6601479 TTCTTCTTCC
Statistics
Matches: 71, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
7 4 0.06
8 8 0.11
9 6 0.08
10 47 0.66
11 6 0.08
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (10 bp):
CTTTCCTTTT
Found at i:6601406 original size:18 final size:18
Alignment explanation
Indices: 6601385--6601450 Score: 71
Period size: 18 Copynumber: 3.6 Consensus size: 18
6601375 CTCCTTTCCT
6601385 TTTCTTTCCTTATTTTTC
1 TTTCTTTCCTTATTTTTC
* *
6601403 TTTCTTTCCTCCCA-TTTCC
1 TTTCTTTCCT--TATTTTTC
*
6601422 TTTTCTTTCCTTCTTTTTC
1 -TTTCTTTCCTTATTTTTC
6601441 TTTCTTTCCT
1 TTTCTTTCCT
6601451 CTCCTTTCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
18 20 0.51
19 8 0.21
20 11 0.28
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTCTTTCCTTATTTTTC
Found at i:6601439 original size:14 final size:14
Alignment explanation
Indices: 6601422--6601483 Score: 54
Period size: 14 Copynumber: 4.1 Consensus size: 14
6601412 TCCCATTTCC
6601422 TTTTCTTTCCTTCT
1 TTTTCTTTCCTTCT
*
6601436 TTTTCTTTCTTTCCT
1 TTTTCTTTCCTT-CT
6601451 CTCCTTTCCTTTTCCTTCT
1 -T--TTT-C-TTTCCTTCT
6601470 TTTTCTTT-CTTCT
1 TTTTCTTTCCTTCT
6601483 T
1 T
6601484 CTTCCCCTCT
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
13 6 0.15
14 14 0.35
15 3 0.08
16 4 0.10
18 4 0.10
19 3 0.08
20 6 0.15
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTCTTTCCTTCT
Found at i:6601456 original size:76 final size:76
Alignment explanation
Indices: 6601321--6601464 Score: 188
Period size: 76 Copynumber: 1.9 Consensus size: 76
6601311 CCTTATTTTC
* *
6601321 TTTTTTTTCTTTCCTTCCTTCCCTCTTCTTCTTCTTTCTTTTTTTTTTTCTCTTCTCCTTTCCTT
1 TTTTTTTTCTTTCCTCCCTTCCCTCTTCTTCTTCCTTCTTTTTTTTTTTCTCTTCTCCTTTCCTT
6601386 TTCTTTCCTTA
66 TTCTTTCCTTA
* *
6601397 TTTTTCTTTCTTTCCTCCCATTTCCTTTTC-T-TTCCTTCTTTTTCTTTCTTTC-C-TCTCCTTT
1 TTTTT-TTTCTTTCCTCCC-TTCCCTCTTCTTCTTCCTTCTTTTT-TTT-TTTCTCTTCTCCTTT
6601458 CCTTTTC
62 CCTTTTC
6601465 CTTCTTTTTC
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
76 31 0.52
77 17 0.28
78 12 0.20
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (76 bp):
TTTTTTTTCTTTCCTCCCTTCCCTCTTCTTCTTCCTTCTTTTTTTTTTTCTCTTCTCCTTTCCTT
TTCTTTCCTTA
Found at i:6601474 original size:72 final size:74
Alignment explanation
Indices: 6601316--6601501 Score: 197
Period size: 72 Copynumber: 2.5 Consensus size: 74
6601306 AATTACCTTA
* * * *
6601316 TTTT-CTTTTTTTTCTTTCCTTCCTTCCCTCTTCTTCTTCTTTCTTTTTTTTTTTCTCTTCTCCT
1 TTTTCCTTATTTTTCTTTCTTTCCTTCCCTCTTCTTCTTCTTTCTTCTTTTTCTTCTCTTCTCCT
* *
6601380 TTCCTTTTC
66 CTCCTTTCC
6601389 -TTTCCTTATTTTTCTTTCTTTCC-TCCCAT-TTCCTT-TTCTTTCCTTCTTTTTCTT-TCTT-T
1 TTTTCCTTATTTTTCTTTCTTTCCTTCCC-TCTT-CTTCTTCTTT-CTTCTTTTTCTTCTCTTCT
6601448 CCTCTCCTTTCC
63 CCTCTCCTTTCC
* * *
6601460 TTTTCCTTCTTTTTCTTTCTTCTTCTTCCCCTCTCCTTCTTC
1 TTTTCCTTATTTTTCTTTCTT-TCCTT-CCCTCTTCTTCTTC
6601502 CCCCTACCAA
Statistics
Matches: 94, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
71 11 0.12
72 38 0.40
73 33 0.35
74 5 0.05
75 7 0.07
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (74 bp):
TTTTCCTTATTTTTCTTTCTTTCCTTCCCTCTTCTTCTTCTTTCTTCTTTTTCTTCTCTTCTCCT
CTCCTTTCC
Found at i:6601497 original size:30 final size:34
Alignment explanation
Indices: 6601429--6601500 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
6601419 TCCTTTTCTT
* * *
6601429 TCCTTCTTTTTCTTTCTTTCCTCTCCTTTCCTTT
1 TCCTTCTTTTTCTTTCTTTCCTCTCCTTCCCCTC
6601463 TCCTTCTTTTTCTTTC-TT-CT-T-CTTCCCCTC
1 TCCTTCTTTTTCTTTCTTTCCTCTCCTTCCCCTC
6601493 TCCTTCTT
1 TCCTTCTT
6601501 CCCCCTACCA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 14 0.40
31 1 0.03
32 2 0.06
33 2 0.06
34 16 0.46
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (34 bp):
TCCTTCTTTTTCTTTCTTTCCTCTCCTTCCCCTC
Found at i:6601651 original size:20 final size:19
Alignment explanation
Indices: 6601615--6601654 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
6601605 TCGGTCTAGT
* *
6601615 TTTTTTTTTGTTTTTTTGG
1 TTTTTTTTTATTATTTTGG
6601634 TTTTTTTTTATATATTTTGG
1 TTTTTTTTTAT-TATTTTGG
6601654 T
1 T
6601655 AAATAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.07, C:0.00, G:0.12, T:0.80
Consensus pattern (19 bp):
TTTTTTTTTATTATTTTGG
Found at i:6609239 original size:26 final size:26
Alignment explanation
Indices: 6609210--6609262 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6609200 TTCCAGAATT
6609210 ATATTTAAAATAAAATATAATTATTA
1 ATATTTAAAATAAAATATAATTATTA
6609236 ATATTTAAAATAAAATATAATTATTA
1 ATATTTAAAATAAAATATAATTATTA
6609262 A
1 A
6609263 ATATAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
ATATTTAAAATAAAATATAATTATTA
Found at i:6609266 original size:13 final size:13
Alignment explanation
Indices: 6609222--6609273 Score: 61
Period size: 13 Copynumber: 4.0 Consensus size: 13
6609212 ATTTAAAATA
6609222 AAATATAATTATT
1 AAATATAATTATT
* * *
6609235 AATATTTAA-AATA
1 AA-ATATAATTATT
6609248 AAATATAATTATT
1 AAATATAATTATT
6609261 AAATATAATTATT
1 AAATATAATTATT
6609274 TAACTTATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
12 5 0.16
13 21 0.68
14 5 0.16
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAATATAATTATT
Found at i:6622970 original size:30 final size:30
Alignment explanation
Indices: 6622934--6623004 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 30
6622924 CTTGGGGGTC
6622934 TATCAGTGCTTTTCCTCGGTTTCTCCCTGG
1 TATCAGTGCTTTTCCTCGGTTTCTCCCTGG
*
6622964 TATCAGTGCTTTTCCTTGGTTTCTCCCTGG
1 TATCAGTGCTTTTCCTCGGTTTCTCCCTGG
*
6622994 TATCGGTGCTT
1 TATCAGTGCTT
6623005 CTTCGTGGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.07, C:0.27, G:0.21, T:0.45
Consensus pattern (30 bp):
TATCAGTGCTTTTCCTCGGTTTCTCCCTGG
Found at i:6623021 original size:30 final size:30
Alignment explanation
Indices: 6622934--6623021 Score: 99
Period size: 30 Copynumber: 2.9 Consensus size: 30
6622924 CTTGGGGGTC
*
6622934 TATCAGTGCTTTTCC-TCGGTTTCTCCCTGG
1 TATCAGTGCTTTTCCGT-GGCTTCTCCCTGG
* *
6622964 TATCAGTGCTTTTCCTTGGTTTCTCCCTGG
1 TATCAGTGCTTTTCCGTGGCTTCTCCCTGG
* *
6622994 TATCGGTGCTTCTT-CGTGGCTTGTCCCT
1 TATCAGTGCTT-TTCCGTGGCTTCTCCCT
6623022 TTGATCCATA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
30 49 0.94
31 3 0.06
ACGTcount: A:0.06, C:0.28, G:0.22, T:0.44
Consensus pattern (30 bp):
TATCAGTGCTTTTCCGTGGCTTCTCCCTGG
Found at i:6623765 original size:4 final size:4
Alignment explanation
Indices: 6623758--6623796 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
6623748 ATATATGCAT
6623758 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
6623797 TGTGTATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:6624076 original size:43 final size:43
Alignment explanation
Indices: 6623943--6624080 Score: 106
Period size: 43 Copynumber: 3.2 Consensus size: 43
6623933 TACATATTCA
*
6623943 CATTTAAAATTGTTTTCCCTAGCTGAAGTTGCAAGTACTTGTG
1 CATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTG
** * ** * * * *
6623986 CATTTAAAA--GAATACAGT-GTCTATAAATAT--ATGTACTTATTCA
1 CATTTAAAATTGTTTTCCCTAG-CT-GAAGT-TGCATGTACTT-GT-G
6624029 CATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTG
1 CATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTG
6624072 CATTTAAAA
1 CATTTAAAA
6624081 GAATACAGTA
Statistics
Matches: 66, Mismatches: 19, Indels: 20
0.63 0.18 0.19
Matches are distributed among these distances:
40 1 0.02
41 13 0.20
42 4 0.06
43 29 0.44
44 4 0.06
45 14 0.21
46 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (43 bp):
CATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTG
Found at i:6624082 original size:86 final size:86
Alignment explanation
Indices: 6623937--6624181 Score: 420
Period size: 86 Copynumber: 2.9 Consensus size: 86
6623927 TGTATATACA
*
6623937 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCAAGTACTTGTGCATTTAAAAGAATACA
1 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
6624002 GTGTCTATAAATATATGTACT
66 GTGTCTATAAATATATGTACT
6624023 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
1 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
* *
6624088 GTATCTATAAATATATGTATT
66 GTGTCTATAAATATATGTACT
* * * *
6624109 TATTCACATTTAAAATTGTTTTCCCTAGCTGAA-TTACATGTACGTGTGCATTGAAAAGAATCCA
1 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
6624173 GTGTCTATA
66 GTGTCTATA
6624182 GCTGTAAAAG
Statistics
Matches: 151, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
85 35 0.23
86 116 0.77
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (86 bp):
TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
GTGTCTATAAATATATGTACT
Found at i:6626813 original size:3 final size:3
Alignment explanation
Indices: 6626805--6626831 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
6626795 TAGAATCTAA
6626805 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
6626832 GGGATGATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:6627125 original size:43 final size:43
Alignment explanation
Indices: 6627060--6627144 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
6627050 TCAATTTGGT
* *
6627060 ACCTAAACTTAACACTTCTTCTTAAGTTGGTACTTAATCTTTA
1 ACCTAAACTTAACACTTCTTCTTAAATTGGTACCTAATCTTTA
* * *
6627103 ACCTAAACTTGACTCTTTTTCTTAAATTGGTACCTAATCTTT
1 ACCTAAACTTAACACTTCTTCTTAAATTGGTACCTAATCTTT
6627145 TTTTGTTCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (43 bp):
ACCTAAACTTAACACTTCTTCTTAAATTGGTACCTAATCTTTA
Found at i:6627602 original size:13 final size:13
Alignment explanation
Indices: 6627584--6627608 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6627574 GCTAAAAAAA
6627584 TTTAGGTACCAAG
1 TTTAGGTACCAAG
6627597 TTTAGGTACCAA
1 TTTAGGTACCAA
6627609 TTATTCTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TTTAGGTACCAAG
Found at i:6628763 original size:17 final size:18
Alignment explanation
Indices: 6628706--6628769 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 18
6628696 TAAAAAAAGT
*
6628706 TAAATTAA-AAAATATAA
1 TAAATTAATAAAATATTA
* *
6628723 TATATTAATAATATTATTA
1 TAAATTAATAA-AATATTA
6628742 GTAAATTAATAAAAT-TTA
1 -TAAATTAATAAAATATTA
6628760 TAAATATAAT
1 TAAAT-TAAT
6628770 TTTACTTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
17 12 0.32
18 9 0.24
19 7 0.18
20 10 0.26
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
TAAATTAATAAAATATTA
Found at i:6628800 original size:20 final size:19
Alignment explanation
Indices: 6628755--6628807 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
6628745 AATTAATAAA
6628755 ATTTA-TAAATATAATTTT
1 ATTTATTAAATATAATTTT
* *
6628773 ACTTATTAAATATTATTTT
1 ATTTATTAAATATAATTTT
6628792 CATTTATTAAAATATA
1 -ATTTATT-AAATATA
6628808 TTGACGTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 4 0.14
19 12 0.43
20 6 0.21
21 6 0.21
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTATTAAATATAATTTT
Found at i:6643676 original size:6 final size:6
Alignment explanation
Indices: 6643653--6643717 Score: 51
Period size: 6 Copynumber: 10.3 Consensus size: 6
6643643 AAGCCGTGGG
* * *
6643653 TTCTTCT TTCTTT CTCTTT TTCTTT TTCTTTCT TTCTAT TTCGTTT TGC-TT
1 TTCTT-T TTCTTT TTCTTT TTCTTT TTC-TT-T TTCTTT TTC-TTT TTCTTT
*
6643704 TTCTCT TTCTTT TT
1 TTCTTT TTCTTT TT
6643718 TTATTATTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
5 4 0.09
6 26 0.57
7 12 0.26
8 4 0.09
ACGTcount: A:0.02, C:0.22, G:0.03, T:0.74
Consensus pattern (6 bp):
TTCTTT
Found at i:6645998 original size:24 final size:22
Alignment explanation
Indices: 6645971--6646039 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 22
6645961 TTATTGTATA
6645971 TTATTATTTTAGATTTATCATGTT
1 TTATTATTTTA-ATTTATCATG-T
6645995 TTATTATTTGTAATTTATCATGT
1 TTATTATTT-TAATTTATCATGT
* *
6646018 ATATTTATTTCAAATTTATCAT
1 TTA-TTATTT-TAATTTATCAT
6646040 TAATATTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
23 3 0.08
24 35 0.88
25 2 0.05
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (22 bp):
TTATTATTTTAATTTATCATGT
Found at i:6647394 original size:19 final size:19
Alignment explanation
Indices: 6647357--6647394 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
6647347 AGATATCATG
*
6647357 TATTAATAAATTAAAAAAA
1 TATTAATAAATAAAAAAAA
6647376 TATTAA-AAATAAAACAAAA
1 TATTAATAAATAAAA-AAAA
6647395 ACAATGAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (19 bp):
TATTAATAAATAAAAAAAA
Found at i:6648392 original size:6 final size:6
Alignment explanation
Indices: 6648383--6648420 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
6648373 TCCTTCATCT
6648383 TCACCA TCACCA TCACCA TCACCA TCACCA TCACCA TC
1 TCACCA TCACCA TCACCA TCACCA TCACCA TCACCA TC
6648421 TTCAAGGCCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (6 bp):
TCACCA
Found at i:6651114 original size:6 final size:7
Alignment explanation
Indices: 6651096--6651140 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
6651086 AGTTATTTTA
6651096 GAAAAAT
1 GAAAAAT
6651103 GAAAAAT
1 GAAAAAT
*
6651110 GAAAAAA
1 GAAAAAT
*
6651117 GAAAAAA
1 GAAAAAT
6651124 GAAAAA-
1 GAAAAAT
6651130 GAAAAA-
1 GAAAAAT
6651136 GAAAA
1 GAAAA
6651141 GCAAACAGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
6 11 0.30
7 26 0.70
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (7 bp):
GAAAAAT
Found at i:6651121 original size:13 final size:13
Alignment explanation
Indices: 6651095--6651140 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
6651085 AAGTTATTTT
*
6651095 AGAAAAATGAAAA
1 AGAAAAAAGAAAA
6651108 ATGAAAAAAGAAAA
1 A-GAAAAAAGAAAA
6651122 A-AGAAAAAGAAAA
1 AGA-AAAAAGAAAA
6651135 AGAAAA
1 AGAAAA
6651141 GCAAACAGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
12 1 0.03
13 15 0.52
14 13 0.45
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.04
Consensus pattern (13 bp):
AGAAAAAAGAAAA
Found at i:6651141 original size:5 final size:6
Alignment explanation
Indices: 6651095--6651140 Score: 56
Period size: 6 Copynumber: 7.0 Consensus size: 6
6651085 AAGTTATTTT
6651095 AGAAAA ATGAAAA ATGAAAAA AGAAAAA AGAAAA AGAAAA AGAAAA
1 AGAAAA A-GAAAA A-G-AAAA AG-AAAA AGAAAA AGAAAA AGAAAA
6651141 GCAAACAGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 17 0.45
7 16 0.42
8 5 0.13
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.04
Consensus pattern (6 bp):
AGAAAA
Found at i:6657012 original size:24 final size:24
Alignment explanation
Indices: 6656993--6657074 Score: 137
Period size: 24 Copynumber: 3.4 Consensus size: 24
6656983 ATTGGCTCGC
6656993 ATGAGCTTCCTGAATATGGCTCTT
1 ATGAGCTTCCTGAATATGGCTCTT
*
6657017 ATGAGCCTCCTGAATATGGCTCTT
1 ATGAGCTTCCTGAATATGGCTCTT
* *
6657041 ATGAGTTTCCTGAATATGGCTATT
1 ATGAGCTTCCTGAATATGGCTCTT
6657065 ATGAGCTTCC
1 ATGAGCTTCC
6657075 CATTATAAAG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.37
Consensus pattern (24 bp):
ATGAGCTTCCTGAATATGGCTCTT
Found at i:6677365 original size:106 final size:106
Alignment explanation
Indices: 6677170--6677478 Score: 429
Period size: 106 Copynumber: 2.9 Consensus size: 106
6677160 AGCATAGATT
* *
6677170 AAAATTCAAGAGGATATTTGGCAATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCAC
1 AAAATT-AAAAGGATATTTAGCAATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCAC
* **
6677235 GTTCCTCAAATTTCCAAACGCAAAACATTACCTTATTTTGTA
65 GTTCCTCGAATTTCCAAACGCAAAACATTACCTTATTTTAAA
*** * * *
6677277 ATTTTTGAAAGGATATTTAGCTATTTGGTTGAACGAGAAATCGAAACCCAGCACCTTAGGGCACG
1 AAAATTAAAAGGATATTTAGCAATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACG
* *
6677342 TTCCTCGAATTTCCAAACACAAAACATTGCCTTATTTTAAA
66 TTCCTCGAATTTCCAAACGCAAAACATTACCTTATTTTAAA
* * *
6677383 AAAATTAAAAGGATATTAAGCCATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCA
1 AAAATTAAAAGGATATTTAGCAATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGCA
*
6677448 CGTTTTCTCGAATTTCCAAACGCAAAACATT
64 CG-TTCCTCGAATTTCCAAACGCAAAACATT
6677479 GCCTCAATTA
Statistics
Matches: 176, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
106 120 0.68
107 3 0.02
108 27 0.15
109 26 0.15
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (106 bp):
AAAATTAAAAGGATATTTAGCAATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACG
TTCCTCGAATTTCCAAACGCAAAACATTACCTTATTTTAAA
Found at i:6678092 original size:4 final size:4
Alignment explanation
Indices: 6678083--6678108 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
6678073 CCATAGAGAA
6678083 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
6678109 TAACCACAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:6680738 original size:19 final size:18
Alignment explanation
Indices: 6680712--6680747 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
6680702 AATATTTTTT
*
6680712 AATAATAATAATTATATC
1 AATAATAATAAATATATC
6680730 AATATATAATAAATATAT
1 AATA-ATAATAAATATAT
6680748 ACTTAGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
AATAATAATAAATATATC
Found at i:6681191 original size:47 final size:47
Alignment explanation
Indices: 6681120--6681214 Score: 147
Period size: 47 Copynumber: 2.0 Consensus size: 47
6681110 GTATGACCTG
*
6681120 AAATTTCCTCTTCGAAAAACCATTACTTTAATA-TACTGTTATTTTTT
1 AAATTTCCTCTTCGAAAAACCATTACTTTAATACT-CTATTATTTTTT
* *
6681167 AAATTTCCTCTTCGAGAAATCATTACTTTAATACTCTATTATTTTTT
1 AAATTTCCTCTTCGAAAAACCATTACTTTAATACTCTATTATTTTTT
6681214 A
1 A
6681215 GACACTTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 43 0.98
48 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.04, T:0.47
Consensus pattern (47 bp):
AAATTTCCTCTTCGAAAAACCATTACTTTAATACTCTATTATTTTTT
Found at i:6687044 original size:7 final size:7
Alignment explanation
Indices: 6687033--6687086 Score: 90
Period size: 7 Copynumber: 7.7 Consensus size: 7
6687023 TAATAAATAT
*
6687033 ATTTTTT
1 ATTTTTA
6687040 ATTTTTA
1 ATTTTTA
*
6687047 TTTTTTA
1 ATTTTTA
6687054 ATTTTTA
1 ATTTTTA
6687061 ATTTTTA
1 ATTTTTA
6687068 ATTTTTA
1 ATTTTTA
6687075 ATTTTTA
1 ATTTTTA
6687082 ATTTT
1 ATTTT
6687087 AAAATACTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
ATTTTTA
Found at i:6687110 original size:24 final size:24
Alignment explanation
Indices: 6687083--6687136 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
6687073 TAATTTTTAA
6687083 TTTTAAAATACTTTTAAAATAATT
1 TTTTAAAATACTTTTAAAATAATT
*** **
6687107 TTTTTTTATTTTTTTAAAATAATT
1 TTTTAAAATACTTTTAAAATAATT
6687131 TTTTAA
1 TTTTAA
6687137 TGTTTATTTT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTAAAATACTTTTAAAATAATT
Found at i:6687146 original size:25 final size:24
Alignment explanation
Indices: 6687094--6687150 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
6687084 TTTAAAATAC
**
6687094 TTTTAAAATAATTTTTTTTTATTT
1 TTTTAAAATAATTTTTTAATATTT
*
6687118 TTTTAAAATAATTTTTTAATGTTT
1 TTTTAAAATAATTTTTTAATATTT
6687142 ATTTTAAAA
1 -TTTTAAAA
6687151 ATGGGCCGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 21 0.72
25 8 0.28
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (24 bp):
TTTTAAAATAATTTTTTAATATTT
Found at i:6688615 original size:45 final size:45
Alignment explanation
Indices: 6688551--6688638 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
6688541 AACAGATACT
* * *
6688551 GGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCC
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAACGATGTCC
*
6688596 GGTGGAATCAGCACATAGCACCCACCTTACTAATCAACGATGT
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAACGATGT
6688639 TTGGTTTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGCAACCACCTTACTAATCAACGATGTCC
Found at i:6688707 original size:51 final size:50
Alignment explanation
Indices: 6688649--6688826 Score: 180
Period size: 51 Copynumber: 3.5 Consensus size: 50
6688639 TTGGTTTACA
6688649 TAGTAGCCTGCACATAGTACTACACATGTGAACATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGAAC-TTACCATCCGATACACG
** * * * * * *
6688700 TAGTAGCCTGCACATAGTACTACACACCTGATCGTAACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGAAC-TTACCATCCGATACACG
* * * * * *
6688751 TAGTAGCTTACACATAGTGCTACACATGCG-ACCTATCATTCC-AGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGAACTTACCA-TCCGA-TACACG
6688801 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACATAGTACTACACA
6688827 CGTAACCATC
Statistics
Matches: 99, Mismatches: 26, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
49 2 0.02
50 31 0.31
51 66 0.67
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGAACTTACCATCCGATACACG
Found at i:6688854 original size:101 final size:100
Alignment explanation
Indices: 6688643--6688865 Score: 236
Period size: 101 Copynumber: 2.2 Consensus size: 100
6688633 CGATGTTTGG
* * *
6688643 TTTACATAGTAGCCTGCACATAGTACTACACATGTGAACATTACCATCCGATACACGTAGTAGCC
1 TTTACATAGTAGCCTACACATAGTACTACACATGCGAACACTACCATCCGATACACGTAGTAGCC
* * *
6688708 TGCACATAGTACTACACACCTGATCGTAACTATCC
66 TGCACATAGTACTACACACCTAACCATAACTATCC
** * * *
6688743 GGTACGCATAGTAGCTTACACATAGTGCTACACATGCG-AC-CTATCATTCC-AGTACACGTAGT
1 TTTA--CATAGTAGCCTACACATAGTACTACACATGCGAACACTACCA-TCCGA-TACACGTAGT
* * *
6688805 AGCCTGCACATAGTACTACACACGTAACCATCACTTTCAC
62 AGCCTGCACATAGTACTACACACCTAACCATAACTATC-C
*
6688845 TTTTACATAGTGGCCTACACA
1 -TTTACATAGTAGCCTACACA
6688866 CAATCCGTGC
Statistics
Matches: 99, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
100 7 0.07
101 61 0.62
102 29 0.29
103 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (100 bp):
TTTACATAGTAGCCTACACATAGTACTACACATGCGAACACTACCATCCGATACACGTAGTAGCC
TGCACATAGTACTACACACCTAACCATAACTATCC
Found at i:6695619 original size:18 final size:18
Alignment explanation
Indices: 6695585--6695639 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
6695575 AATGATTTAG
*
6695585 TATAATTATTA-ATATATA
1 TATAATTAATATA-ATATA
6695603 TATAATTAATATAATAT-
1 TATAATTAATATAATATA
* *
6695620 TTTAATATAATATTATATA
1 TATAAT-TAATATAATATA
6695639 T
1 T
6695640 TCAGATTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 5 0.16
18 24 0.77
19 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATAATTAATATAATATA
Found at i:6695624 original size:13 final size:13
Alignment explanation
Indices: 6695580--6695633 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
6695570 GAGTTAATGA
*
6695580 TTTAGTATAAT-T
1 TTTAATATAATAT
*
6695592 ATTAATATATATAT
1 TTTAATATA-ATAT
*
6695606 AATTAATATAATAT
1 -TTTAATATAATAT
6695620 TTTAATATAATAT
1 TTTAATATAATAT
6695633 T
1 T
6695634 ATATATTCAG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
12 7 0.19
13 15 0.42
14 5 0.14
15 9 0.25
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (13 bp):
TTTAATATAATAT
Found at i:6705592 original size:22 final size:22
Alignment explanation
Indices: 6705551--6705592 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
6705541 AGAATTTTTA
* *
6705551 AAAATTTTAAGAGAGCTCAATT
1 AAAATTTTAAAAAAGCTCAATT
*
6705573 AAAATTTTAAAAAAGTTCAA
1 AAAATTTTAAAAAAGCTCAA
6705593 AATTATAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (22 bp):
AAAATTTTAAAAAAGCTCAATT
Found at i:6707699 original size:24 final size:24
Alignment explanation
Indices: 6707672--6707717 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
6707662 AATCTAATTC
6707672 TAATCAAA-GTCAAATATATTATGT
1 TAAT-AAATGTCAAATATATTATGT
*
6707696 TAATAAATGTTAAATATATTAT
1 TAATAAATGTCAAATATATTAT
6707718 ACTTATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.41
Consensus pattern (24 bp):
TAATAAATGTCAAATATATTATGT
Found at i:6707733 original size:24 final size:24
Alignment explanation
Indices: 6707683--6707734 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
6707673 AATCAAAGTC
* **
6707683 AAATATATTATGTTAATAAATGTT
1 AAATATATTATCTTAATAAATACT
6707707 AAATATATTATACTT-ATAAATACT
1 AAATATATTAT-CTTAATAAATACT
6707731 AAAT
1 AAAT
6707735 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (24 bp):
AAATATATTATCTTAATAAATACT
Found at i:6715511 original size:35 final size:36
Alignment explanation
Indices: 6715440--6715511 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
6715430 TTATTACGAA
* *
6715440 GTCTTACCCGGACATAATCTCCACACGAAGTTATCG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCG
*
6715476 GTCTTACCCGGACAAAATCT-CACACGTAGTCATCG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCG
6715511 G
1 G
6715512 GCTTTAGAGC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 14 0.42
36 19 0.58
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCG
Found at i:6715792 original size:45 final size:47
Alignment explanation
Indices: 6715629--6715799 Score: 258
Period size: 48 Copynumber: 3.6 Consensus size: 47
6715619 ATGCCTTCGG
* *
6715629 ACTTATCACATTCATCACATC-GCCATTAGGCCCTATACAATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTAT-C-ACATATATAC
6715678 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
6715725 ACTTTTCACATTCATCACATCGGCCATTA-G-TTTATCACATATATAC
1 AC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
6715771 ACTTTCACATTCATCACATCGGCCATTAG
1 ACTTTCACATTCATCACATCGGCCATTAG
6715800 CCATACTATC
Statistics
Matches: 116, Mismatches: 3, Indels: 9
0.91 0.02 0.07
Matches are distributed among these distances:
45 26 0.22
46 17 0.15
47 12 0.10
48 43 0.37
49 18 0.16
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:6720179 original size:43 final size:43
Alignment explanation
Indices: 6720121--6720222 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
6720111 TGGTTTTCAA
6720121 GCACT-AGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
6720163 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
6720206 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
6720223 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 5 0.08
43 54 0.92
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:6720239 original size:29 final size:29
Alignment explanation
Indices: 6720204--6720277 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
6720194 GTTGTGAGAT
* *
6720204 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
6720233 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
6720262 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
6720278 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:6720784 original size:40 final size:39
Alignment explanation
Indices: 6720592--6720889 Score: 225
Period size: 40 Copynumber: 7.4 Consensus size: 39
6720582 ATGATGTCCA
* *
6720592 GGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCC
1 GGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCC
* * *
6720631 GGACTAAGAT-CCGAAG-GCATTGGTG-TGAGTTTACTAAATCC
1 GG-CTAAG-TCCCGAAGAGCATTCGTGCT-AG-TGA-TATATCC
* *
6720672 GGGCTAAGTCCCGAAGAGCATTCTATGCTAGTGATGTATCC
1 -GGCTAAGTCCCGAAGAGCATTC-GTGCTAGTGATATATCC
* *
6720713 GGGCTAAGT-TCG-AGAGCATTCTATGCTAGTGATATATCGC
1 -GGCTAAGTCCCGAAGAGCATTC-GTGCTAGTGATATATC-C
* *
6720753 GGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCC
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
*
6720792 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-TATATACC
1 -GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT-CC
** * * * *
6720832 GTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTTATATCG
1 G-GCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATATCC
*
6720873 GGCTAGGTCCCGAAGAG
1 GGCTAAGTCCCGAAGAG
6720890 TAATCATGCT
Statistics
Matches: 213, Mismatches: 29, Indels: 33
0.77 0.11 0.12
Matches are distributed among these distances:
39 41 0.19
40 104 0.49
41 49 0.23
42 14 0.07
43 4 0.02
44 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC
Found at i:6720838 original size:80 final size:80
Alignment explanation
Indices: 6720592--6720859 Score: 273
Period size: 80 Copynumber: 3.3 Consensus size: 80
6720582 ATGATGTCCA
* ** * * *
6720592 GGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCATTGG
1 GGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCATTCG
* *
6720654 TG-TGAGTTTACTAAATCC
64 TGCT-AGTGTA-TATATCC
*
6720672 GGGCTAAGTCCCGAAGAGCATTCTATGCTAGTGATGTATCCGGGCTAAGTT-CG-AGAGCATTCT
1 -GGCTAAGTCCCGAAGAGCATTC-GTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTC-
*
6720735 ATGCTAGTG-ATATATCGC
63 GTGCTAGTGTATATATC-C
*
6720753 GGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTG
6720818 CTAGTGTATATA-CC
66 CTAGTGTATATATCC
** *
6720832 GTGCTAAACCCCAAAGAGCATTCGTGCT
1 G-GCTAAGTCCCGAAGAGCATTCGTGCT
6720860 GGTGTTTATA
Statistics
Matches: 159, Mismatches: 17, Indels: 23
0.80 0.09 0.12
Matches are distributed among these distances:
79 28 0.18
80 61 0.38
81 38 0.24
82 20 0.13
83 8 0.05
84 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTG
CTAGTGTATATATCC
Found at i:6720877 original size:120 final size:120
Alignment explanation
Indices: 6720668--6720885 Score: 264
Period size: 120 Copynumber: 1.8 Consensus size: 120
6720658 AGTTTACTAA
* *** *
6720668 ATCCGGGCTAAGTCCCGAAGAGCATTCTATGCTAGTGATGTATCCGGGCTAAGTTCGAGAGCATT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCTATGCTAGTGATATATCCGGGCTAACCCCAAGAGCATT
6720733 CTATGCTAGTGATATATCGCGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGT
66 CTATGCTAGTGATATATCGCGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGT
* * *
6720788 ATCCGGGCTAAGTTCCGAAGAGCATTC-GTGCTAGTG-TATATACCGTGCTAAACCCCAAAGAGC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCTATGCTAGTGATATAT-CCGGGCT-AACCCC-AAGAGC
* * * *
6720851 ATTC-GTGCTGGTGTTTATATCG-GGCTAGGTCCCGA
63 ATTCTATGCTAGTG-ATATATCGCGGCTAAGTCCCGA
6720886 AGAGTAATCA
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
118 4 0.05
119 14 0.17
120 48 0.59
121 16 0.20
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (120 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCTATGCTAGTGATATATCCGGGCTAACCCCAAGAGCATT
CTATGCTAGTGATATATCGCGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGT
Found at i:6724337 original size:40 final size:40
Alignment explanation
Indices: 6724275--6724559 Score: 298
Period size: 40 Copynumber: 7.2 Consensus size: 40
6724265 NNNNNNNNNC
* * * **
6724275 TAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTT
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACT
* *
6724315 TAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACT
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACT
* *
6724355 TAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACT
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACT
*
6724395 TAGCCCGG--ATA-CACTAGCATGAATGCTCTTC-GGACT
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACT
* * *
6724431 TAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACT
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACT
* * * *
6724471 TAGCCCGGATTTAGTAACTCGCACCAATGC-CTTC-GGATCT
1 TAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGGA-CT
* * *
6724511 TAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACT
1 TAGCCCGGATAT-ATCAC-TAGCACGAATGCTCTTCGGGACT
6724551 TAGCCCGGA
1 TAGCCCGGA
6724560 CATCATTCGA
Statistics
Matches: 206, Mismatches: 30, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
36 13 0.06
37 18 0.09
38 4 0.02
39 22 0.11
40 130 0.63
41 19 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACT
Found at i:6724559 original size:156 final size:156
Alignment explanation
Indices: 6724275--6724559 Score: 351
Period size: 156 Copynumber: 1.8 Consensus size: 156
6724265 NNNNNNNNNC
* * ** * *
6724275 TAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGA
1 TAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCA
*
6724340 ATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGAT
66 ATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAAAGCTCCTCGGGACTTAGCCCGGAT
6724405 ACACTAGCATGAATGCTCTTCGGACT
131 ACACTAGCATGAATGCTCTTCGGACT
* * * * * * *
6724431 TAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
1 TAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGATATA-TAACTAGCACC
* * ** *
6724496 AATGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCG
65 AATGCTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCACGAAAGCTCCTCGGGACTTAGCCCG
6724558 GA
128 GA
6724560 CATCATTCGA
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
156 80 0.75
157 21 0.20
158 6 0.06
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (156 bp):
TAGCCCGGATACAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCA
ATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAAAGCTCCTCGGGACTTAGCCCGGAT
ACACTAGCATGAATGCTCTTCGGACT
Found at i:6724901 original size:29 final size:29
Alignment explanation
Indices: 6724862--6724940 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
6724852 CTTAATAATC
*
6724862 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
6724892 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
6724921 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
6724941 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:6724983 original size:43 final size:43
Alignment explanation
Indices: 6724922--6725024 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
6724912 TGCATTTCAA
6724922 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
6724965 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
6725008 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
6725025 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:6726938 original size:37 final size:37
Alignment explanation
Indices: 6726888--6726966 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
6726878 TTATTACGAA
* * *
6726888 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
6726925 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
6726962 ATCTT
1 GTCTT
6726967 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:6727187 original size:48 final size:48
Alignment explanation
Indices: 6727084--6727268 Score: 320
Period size: 48 Copynumber: 3.8 Consensus size: 48
6727074 GCCCTTCGGG
6727084 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGG-CCTATCACATATATATAC
6727134 ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATAC
6727182 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
*
6727229 ACTTTCACATTCATCACATCGGCCATTAGGCCTTTCACAT
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACAT
6727269 TCATCACATC
Statistics
Matches: 131, Mismatches: 1, Indels: 8
0.94 0.01 0.06
Matches are distributed among these distances:
46 5 0.04
47 40 0.31
48 50 0.38
49 32 0.24
50 4 0.03
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATAC
Found at i:6727261 original size:95 final size:97
Alignment explanation
Indices: 6727084--6727268 Score: 329
Period size: 95 Copynumber: 1.9 Consensus size: 97
6727074 GCCCTTCGGG
6727084 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATACACTTTCACATTCATC
6727149 ACATCGGCCATTAGGCCTATCACATATATATAC
65 ACATCGGCCATTAGGCCTATCACATATATATAC
*
6727182 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCA
1 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCA
*
6727245 CATCGGCCATTAGGCCTTTCACAT
66 CATCGGCCATTAGGCCTATCACAT
6727269 TCATCACATC
Statistics
Matches: 85, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
95 47 0.55
97 34 0.40
98 4 0.05
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (97 bp):
ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCA
CATCGGCCATTAGGCCTATCACATATATATAC
Done.