Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 21 of 189
Found at i:6727266 original size:30 final size:30
Alignment explanation
Indices: 6727230--6727299 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
6727220 CATATATACA
6727230 CTTTCACATTCATCACATCGGCCATTAGGC
1 CTTTCACATTCATCACATCGGCCATTAGGC
6727260 CTTTCACATTCATCACATCGGCCATTAGGC
1 CTTTCACATTCATCACATCGGCCATTAGGC
6727290 CTTATCACAT
1 CTT-TCACAT
6727300 ATATACACTT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
30 33 0.85
31 6 0.15
ACGTcount: A:0.24, C:0.33, G:0.11, T:0.31
Consensus pattern (30 bp):
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:6727266 original size:77 final size:77
Alignment explanation
Indices: 6727183--6727346 Score: 310
Period size: 77 Copynumber: 2.1 Consensus size: 77
6727173 TATATATACA
6727183 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
6727248 CGGCCATTAGGC
66 CGGCCATTAGGC
6727260 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
6727325 CGGCCATTAGGC
66 CGGCCATTAGGC
*
6727337 ATTATCACAT
1 CTT-TCACAT
6727347 ATATACACTT
Statistics
Matches: 85, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
77 79 0.93
78 6 0.07
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (77 bp):
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:6727313 original size:47 final size:47
Alignment explanation
Indices: 6727260--6727431 Score: 335
Period size: 47 Copynumber: 3.7 Consensus size: 47
6727250 GCCATTAGGC
6727260 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
6727307 CTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
6727354 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
6727401 CTTTCACATTCATCACATCGGCCATTAGGCC
1 CTTTCACATTCATCACATCGGCCATTAGGCC
6727432 ATACTATCAT
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 123 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:6727329 original size:124 final size:124
Alignment explanation
Indices: 6727135--6727393 Score: 475
Period size: 124 Copynumber: 2.1 Consensus size: 124
6727125 TATATATACA
6727135 CTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCACA
1 CTTTCACATTCATCACATCGGCCATTAGGCCTATCACA-ATATATACACTTTCACATTCATCACA
*
6727200 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65 TCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6727260 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACA
1 CTTTCACATTCATCACATCGGCCATTAGGCC-TATCACAATATATACACTTTCACATTCATCACA
6727324 TCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65 TCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
6727384 CTTATCACAT
1 CTT-TCACAT
6727394 ATATACACTT
Statistics
Matches: 131, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
124 88 0.67
125 37 0.28
126 6 0.05
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (124 bp):
CTTTCACATTCATCACATCGGCCATTAGGCCTATCACAATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:6727369 original size:25 final size:25
Alignment explanation
Indices: 6727293--6727371 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
6727283 ATTAGGCCTT
6727293 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
6727318 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
6727340 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
6727365 ATCACAT
1 ATCACAT
6727372 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:6727385 original size:171 final size:172
Alignment explanation
Indices: 6727089--6727431 Score: 627
Period size: 171 Copynumber: 2.0 Consensus size: 172
6727079 TCGGGACTTA
6727089 TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATACACTTTCACATTCATCACATC
6727154 GGCCATTAGGCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
65 GGCCATTAGGCCTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
6727219 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
129 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
6727263 TCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCG
1 TCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCACATCG
*
6727327 GCCATTAGGCATTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
66 GCCATTAGGC-CTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
6727391 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
130 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
6727432 ATACTATCAT
Statistics
Matches: 166, Mismatches: 2, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
171 87 0.52
172 39 0.23
173 6 0.04
174 34 0.20
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (172 bp):
TCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:6737344 original size:14 final size:14
Alignment explanation
Indices: 6737325--6737352 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6737315 TACTAACGTT
6737325 TCACAATATTTAAC
1 TCACAATATTTAAC
6737339 TCACAATATTTAAC
1 TCACAATATTTAAC
6737353 ATACACATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (14 bp):
TCACAATATTTAAC
Found at i:6738054 original size:5 final size:5
Alignment explanation
Indices: 6738044--6738106 Score: 73
Period size: 5 Copynumber: 13.2 Consensus size: 5
6738034 TAATTATGTT
6738044 TTATA TTATA TTATTA TTA-A -TATA TTATA TTATA TTATA -T-TA TTATA
1 TTATA TTATA TTA-TA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
6738091 TTATTA TTATA -TATA T
1 TTA-TA TTATA TTATA T
6738107 GACAAAGAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
3 4 0.08
4 8 0.16
5 29 0.57
6 10 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:6738060 original size:3 final size:3
Alignment explanation
Indices: 6738047--6738100 Score: 57
Period size: 3 Copynumber: 20.0 Consensus size: 3
6738037 TTATGTTTTA
*
6738047 TAT TA- TAT TAT TAT TAA TA- TAT TA- TAT TA- TAT TA- TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6738089 TAT TAT TAT TAT
1 TAT TAT TAT TAT
6738101 ATATATGACA
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
2 12 0.27
3 32 0.73
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:6738060 original size:8 final size:8
Alignment explanation
Indices: 6738044--6738097 Score: 58
Period size: 8 Copynumber: 6.5 Consensus size: 8
6738034 TAATTATGTT
6738044 TTATATTA
1 TTATATTA
6738052 -TATTATTA
1 TTA-TATTA
6738060 TTA-ATATA
1 TTATAT-TA
6738068 TTATATTATA
1 TTATA-T-TA
6738078 TTATATTA
1 TTATATTA
6738086 TTATATTA
1 TTATATTA
6738094 TTAT
1 TTAT
6738098 TATATATATG
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.10
8 24 0.59
9 4 0.10
10 9 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTATATTA
Found at i:6738077 original size:29 final size:29
Alignment explanation
Indices: 6738044--6738106 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
6738034 TAATTATGTT
6738044 TTATATTATATTATTATTAATA-TATTATA
1 TTATATTATATTATTA-TAATATTATTATA
*
6738073 TTATATTATATTATTATATTATTATTATA
1 TTATATTATATTATTATAATATTATTATA
6738102 -TATAT
1 TTATAT
6738107 GACAAAGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 9 0.28
29 23 0.72
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (29 bp):
TTATATTATATTATTATAATATTATTATA
Found at i:6738171 original size:40 final size:40
Alignment explanation
Indices: 6738115--6738209 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
6738105 ATGACAAAGA
6738115 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
6738155 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
6738195 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
6738210 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 39 0.78
41 11 0.22
ACGTcount: A:0.63, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:6738974 original size:29 final size:30
Alignment explanation
Indices: 6738916--6738972 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
6738906 TCCGAGCCTT
*
6738916 GGGCAAAAATGTAATTATGTAAAAGTTTAG
1 GGGCAAAAATGTAATTATGAAAAAGTTTAG
* *
6738946 GGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGCAAAAATGTAATTATGAAAAAGTT
6738973 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.32
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGAAAAAGTTTAG
Found at i:6739202 original size:13 final size:13
Alignment explanation
Indices: 6739184--6739215 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6739174 TTTCCAGCAA
6739184 TTATGAATTTATT
1 TTATGAATTTATT
6739197 TTATGAATTTATT
1 TTATGAATTTATT
*
6739210 TGATGA
1 TTATGA
6739216 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:6739423 original size:50 final size:50
Alignment explanation
Indices: 6739310--6739551 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
6739300 ATTTGGGTAA
* * *
6739310 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
6739366 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
6739416 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
6739466 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
6739516 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
6739552 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:6739499 original size:100 final size:103
Alignment explanation
Indices: 6739310--6739559 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
6739300 ATTTGGGTAA
6739310 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
6739375 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
6739416 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
6739478 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
6739516 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
6739560 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:6742015 original size:13 final size:13
Alignment explanation
Indices: 6741997--6742024 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6741987 TGATCTCTTC
6741997 TGGGTATTCTATA
1 TGGGTATTCTATA
6742010 TGGGTATTCTATA
1 TGGGTATTCTATA
6742023 TG
1 TG
6742025 CTCTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Found at i:6743998 original size:5 final size:5
Alignment explanation
Indices: 6743988--6744029 Score: 57
Period size: 5 Copynumber: 7.8 Consensus size: 5
6743978 AATTATGTTT
6743988 TTATA TTATA TTATTA TTATATA TTATA TTATA TTATA TTAT
1 TTATA TTATA TTA-TA -T-TATA TTATA TTATA TTATA TTAT
6744030 TATATATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 26 0.76
6 3 0.09
7 3 0.09
8 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:6744010 original size:18 final size:17
Alignment explanation
Indices: 6743989--6744040 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 17
6743979 ATTATGTTTT
6743989 TATATTATATTATTATTA
1 TATATTATATTA-TATTA
6744007 TATATTATATTATATTA
1 TATATTATATTATATTA
6744024 TATTATTATATATATAT
1 TA-TATTATAT-TATAT
6744041 GACAAAGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.22
18 20 0.62
19 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TATATTATATTATATTA
Found at i:6744012 original size:10 final size:10
Alignment explanation
Indices: 6743991--6744040 Score: 52
Period size: 11 Copynumber: 5.0 Consensus size: 10
6743981 TATGTTTTTA
6743991 TATTATATTAT
1 TATTATA-TAT
6744002 TATTATATAT
1 TATTATATAT
6744012 TA-TAT-TA-
1 TATTATATAT
6744019 TATTATATTAT
1 TATTATA-TAT
6744030 TATATATATAT
1 TAT-TATATAT
6744041 GACAAAGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
7 2 0.06
8 5 0.15
9 3 0.09
10 7 0.21
11 13 0.38
12 4 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TATTATATAT
Found at i:6744106 original size:40 final size:40
Alignment explanation
Indices: 6744049--6744144 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
6744039 ATGACAAAGA
6744049 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
6744090 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
6744130 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
6744145 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:6744910 original size:29 final size:30
Alignment explanation
Indices: 6744851--6744908 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
6744841 TCCGAGCCTT
*
6744851 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
6744881 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
6744909 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:6745138 original size:13 final size:13
Alignment explanation
Indices: 6745120--6745151 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6745110 TTTCCAGCAA
6745120 TTATGAATTTATT
1 TTATGAATTTATT
6745133 TTATGAATTTATT
1 TTATGAATTTATT
*
6745146 TGATGA
1 TTATGA
6745152 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:6745359 original size:50 final size:50
Alignment explanation
Indices: 6745246--6745487 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
6745236 ATTTGGGTAA
* * *
6745246 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
6745302 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
6745352 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
6745402 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
6745452 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
6745488 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:6745435 original size:100 final size:103
Alignment explanation
Indices: 6745246--6745495 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
6745236 ATTTGGGTAA
6745246 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
6745311 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
6745352 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
6745414 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
6745452 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
6745496 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:6747537 original size:42 final size:42
Alignment explanation
Indices: 6747490--6747604 Score: 160
Period size: 42 Copynumber: 2.7 Consensus size: 42
6747480 ATGCTAAGCA
* *
6747490 GAAACCCGTAAGGGTTAAACGGAAGCTCATAAGAGCTGAACG
1 GAAACCCGTAAGGGTTAAACTGAAGCTCATAAGAGCTAAACG
* * *
6747532 GAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTAAACT
1 GAAACCCGTAAGGGTTAAACTGAAGCTCATAAGAGCTAAACG
*
6747574 GAAACCCAG-AAGGGTTAAACTGAAACTCATA
1 GAAACCC-GTAAGGGTTAAACTGAAGCTCATA
6747605 TAAGTTAATT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.16
Consensus pattern (42 bp):
GAAACCCGTAAGGGTTAAACTGAAGCTCATAAGAGCTAAACG
Found at i:6747573 original size:21 final size:21
Alignment explanation
Indices: 6747505--6747639 Score: 96
Period size: 21 Copynumber: 6.5 Consensus size: 21
6747495 CCGTAAGGGT
* *
6747505 TAAACGGAAGCTCATAAGAGC
1 TAAACTGAAACTCATAAGAGC
* * * * *
6747526 TGAACGGAAACCCATAAGGGT
1 TAAACTGAAACTCATAAGAGC
* *
6747547 TAAACTGAAGCTCAAAAGAGC
1 TAAACTGAAACTCATAAGAGC
* * * *
6747568 TAAACTGAAACCCAGAAGGGT
1 TAAACTGAAACTCATAAGAGC
6747589 TAAACTGAAACTCATATA-AG-
1 TAAACTGAAACTCATA-AGAGC
* *
6747609 TTAA-TTAAAGCTCATAAGAGC
1 TAAACTGAAA-CTCATAAGAGC
6747630 TAAACTGAAA
1 TAAACTGAAA
6747640 GCAAACACGG
Statistics
Matches: 85, Mismatches: 24, Indels: 9
0.72 0.20 0.08
Matches are distributed among these distances:
19 5 0.06
20 11 0.13
21 64 0.75
22 5 0.06
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.19
Consensus pattern (21 bp):
TAAACTGAAACTCATAAGAGC
Found at i:6750228 original size:11 final size:11
Alignment explanation
Indices: 6750214--6750264 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
6750204 AAACACCTAG
6750214 TTTTTCTTTTC
1 TTTTTCTTTTC
6750225 TTTTT-TTTTC
1 TTTTTCTTTTC
6750235 TTTCTTC-TTTC
1 TTT-TTCTTTTC
*
6750246 TTCTCTCTTTCTC
1 TT-TTTCTTT-TC
6750259 TTTTTC
1 TTTTTC
6750265 CTTAGCTTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
10 8 0.24
11 15 0.45
12 6 0.18
13 4 0.12
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:6751660 original size:21 final size:21
Alignment explanation
Indices: 6751622--6751674 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
6751612 CTATAAAATA
* *
6751622 TAGTTACTATAGCGATGATAT
1 TAGTTACTATAGCAATGAGAT
*
6751643 TAGTTACTATAGTAATGAGAT
1 TAGTTACTATAGCAATGAGAT
6751664 TAAG-TACTATA
1 T-AGTTACTATA
6751675 ACGGTGAGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (21 bp):
TAGTTACTATAGCAATGAGAT
Found at i:6752781 original size:31 final size:29
Alignment explanation
Indices: 6752743--6752812 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
6752733 ACTACTAAAA
* *
6752743 TAGTCACTTTTGTTTGACTCAGGTTACATTT
1 TAGTCACTTATGTTTGA--AAGGTTACATTT
* *
6752774 TAGTCACTTATGTTTGAAATGTTACGTTT
1 TAGTCACTTATGTTTGAAAGGTTACATTT
6752803 TAGTCACTTA
1 TAGTCACTTA
6752813 CGTTATTGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.54
31 16 0.46
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.47
Consensus pattern (29 bp):
TAGTCACTTATGTTTGAAAGGTTACATTT
Found at i:6753892 original size:23 final size:25
Alignment explanation
Indices: 6753846--6753899 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 25
6753836 TTTTCTTCTT
*
6753846 TATTTAATTTTTTTTTATGATTTTC
1 TATTTAATATTTTTTTATGATTTTC
* *
6753871 TATTTAA-ATTTTTTTGTG-TTTTT
1 TATTTAATATTTTTTTATGATTTTC
6753894 TATTTA
1 TATTTA
6753900 CTTTTGAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 10 0.38
24 9 0.35
25 7 0.27
ACGTcount: A:0.20, C:0.02, G:0.06, T:0.72
Consensus pattern (25 bp):
TATTTAATATTTTTTTATGATTTTC
Found at i:6759261 original size:60 final size:59
Alignment explanation
Indices: 6759152--6759279 Score: 130
Period size: 60 Copynumber: 2.2 Consensus size: 59
6759142 GGCCTGAACT
* ** * * * **
6759152 TTTTTTTTTGTCCAAGTTAGGCTTTGAACTTGGTAATTTTTATCACATTGAGACTTGGAC
1 TTTTTTTTTATCCAAGTTAGGCCCTGAACTTGGCAATTGTTACCACATTG-GACTTCAAC
* * * * *
6759212 TTTTTTTTTATCCAAGTTAGGCCCTGAATTTTGCAATTGTTCCCGCATTGGGCTTCAAC
1 TTTTTTTTTATCCAAGTTAGGCCCTGAACTTGGCAATTGTTACCACATTGGACTTCAAC
6759271 TTTTTTTTT
1 TTTTTTTTT
6759280 CCCAAGTAGT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
59 15 0.27
60 40 0.73
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.48
Consensus pattern (59 bp):
TTTTTTTTTATCCAAGTTAGGCCCTGAACTTGGCAATTGTTACCACATTGGACTTCAAC
Found at i:6759447 original size:31 final size:31
Alignment explanation
Indices: 6759393--6759466 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 31
6759383 TGGACAACAA
* * * **
6759393 AAGTTCAAGTCTCAATGTGGGAACTGTTGCC
1 AAGTTCAAGCCCCGATGTGGGAACAATTGCC
* * *
6759424 TAGTTCAGGCCCCGATGTTGGAACAATTGCC
1 AAGTTCAAGCCCCGATGTGGGAACAATTGCC
6759455 AAGTTCAAGCCC
1 AAGTTCAAGCCC
6759467 TAACTTGAAA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (31 bp):
AAGTTCAAGCCCCGATGTGGGAACAATTGCC
Found at i:6759471 original size:89 final size:90
Alignment explanation
Indices: 6759355--6759525 Score: 209
Period size: 90 Copynumber: 1.9 Consensus size: 90
6759345 CCTAATATGA
* * * * * * * **
6759355 GAACAATTACCAAATTCAAGGACTAACTTGGACAACAAAA-GTTCAAGTCTCAATGTGGGAACTG
1 GAACAATTACCAAATTCAAGCACTAACTTGAAAAAAAAAAGGTTCAAGTCCCAACGTGGAAAAAG
*
6759419 TTGCCTAGTTCAGGCCCCGATGTTG
66 TTGCCAAGTTCAGGCCCCGATGTTG
* * * *
6759444 GAACAATTGCCAAGTTCAAGCCCTAACTTGAAAAAAAAAAGGTTCAGGTCCCAACGTGGAAAAAG
1 GAACAATTACCAAATTCAAGCACTAACTTGAAAAAAAAAAGGTTCAAGTCCCAACGTGGAAAAAG
6759509 TTGCCAAGTTCAGGCCC
66 TTGCCAAGTTCAGGCCC
6759526 TAAATGTTGA
Statistics
Matches: 67, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
89 33 0.49
90 34 0.51
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (90 bp):
GAACAATTACCAAATTCAAGCACTAACTTGAAAAAAAAAAGGTTCAAGTCCCAACGTGGAAAAAG
TTGCCAAGTTCAGGCCCCGATGTTG
Found at i:6766497 original size:16 final size:17
Alignment explanation
Indices: 6766476--6766510 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
6766466 AATTAATTTA
*
6766476 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
6766492 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
6766509 AA
1 AA
6766511 CACAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:6769016 original size:41 final size:41
Alignment explanation
Indices: 6768956--6769060 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
6768946 TTTAAACAGA
*
6768956 TTCACTGGCACTTCA-CCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACCGGCACTT-AGCCTGCTAGGCTTATAGCCTGATTCAG
6768997 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
*
6769038 ATCACCGGCACTTAGCCTGCTAG
1 TTCACCGGCACTTAGCCTGCTAG
6769061 ACGTAAAGTC
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 1 0.02
41 60 0.98
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.29
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
Found at i:6769084 original size:41 final size:41
Alignment explanation
Indices: 6768949--6769086 Score: 118
Period size: 41 Copynumber: 3.3 Consensus size: 41
6768939 CACTTAATTT
* * * *
6768949 AAACAGATTCACTGGCACTTCA-CCTGCTAGGCTTATAGCCTG
1 AAACAG-TTCACCGGCACTT-AGCCTGCTAGACGTAAAGCCTG
** * * *
6768991 ATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 AAACAGTTCACCGGCACTTAGCCTGCTAGACGTAAAGCCTG
** *
6769032 ATTCAGATCACCGGCACTTAGCCTGCTAGACGTAAAGTCC-G
1 AAACAGTTCACCGGCACTTAGCCTGCTAGACGTAAAG-CCTG
*
6769073 AAACATTTCACCGG
1 AAACAGTTCACCGG
6769087 TAATTAATCT
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.01
41 76 0.92
42 6 0.07
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (41 bp):
AAACAGTTCACCGGCACTTAGCCTGCTAGACGTAAAGCCTG
Found at i:6770794 original size:28 final size:31
Alignment explanation
Indices: 6770755--6770813 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 31
6770745 TGTTTTGTTT
6770755 TTATTATAATAA-CATTAT-AAT-ATATAAA
1 TTATTATAATAACCATTATAAATAATATAAA
* *
6770783 TTATTATTATAACCTTTATAAATAATATAAA
1 TTATTATAATAACCATTATAAATAATATAAA
6770814 AACTATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 11 0.42
29 5 0.19
30 3 0.12
31 7 0.27
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (31 bp):
TTATTATAATAACCATTATAAATAATATAAA
Found at i:6789706 original size:43 final size:43
Alignment explanation
Indices: 6789607--6789919 Score: 375
Period size: 43 Copynumber: 7.3 Consensus size: 43
6789597 AGATTATGTT
* ** *
6789607 TTTAGCGGCGTTTTTGCTAGAAA-CGCCGCTAAAGGT-TTGTTC
1 TTTAGCGGCGTTTGTGGGA-AAAGCGCCGCTAAAGGTCTTGGTC
*
6789649 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT-
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
** * *
6789691 TTATAGCGGCGTTTGTGATAAAAGCGCCGCGAAAGGTCATGGTC
1 TT-TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
6789735 TATAGCGACGTTTGT-GGAAATAGCGCCGTTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAA-AGCGCCGCTAAAGGTCTTGGTC
* *
6789778 TTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTTGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * * *
6789821 TTTAGCGGTGTTTGT-GGAAGAACCGCCGTTAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGGGAA-AAGCGCCGCTAAAGGTCTTGGTC
* *
6789864 TTTAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
6789907 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
6789920 TTTCTAAAGT
Statistics
Matches: 231, Mismatches: 32, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
41 3 0.01
42 37 0.16
43 183 0.79
44 8 0.03
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:6793878 original size:49 final size:49
Alignment explanation
Indices: 6793806--6793904 Score: 164
Period size: 49 Copynumber: 2.0 Consensus size: 49
6793796 GTTTGTGTAT
* *
6793806 TCATAACAATTTGGTACCAAAGCCTATCACAA-TAGGCAATGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCTACCACAACT-GGCAACGATGTACTA
6793855 TCATAACAATTTGGTACCAAAGCCTACCACAACTGGCAACGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCTACCACAACTGGCAACGATGTACTA
6793904 T
1 T
6793905 GTTGTTACAA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 46 0.98
50 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.25
Consensus pattern (49 bp):
TCATAACAATTTGGTACCAAAGCCTACCACAACTGGCAACGATGTACTA
Found at i:6803014 original size:48 final size:48
Alignment explanation
Indices: 6802958--6803054 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
6802948 TTTAATTTCC
6802958 TCTGTTTTTCATAGTTTATTTGTTTGTATTTGAATGTATTTTGAGGCT
1 TCTGTTTTTCATAGTTTATTTGTTTGTATTTGAATGTATTTTGAGGCT
6803006 TCTGTTTTTCATAGTTTATTTGTTTGTATTTGAATGTATTTTGAGGCT
1 TCTGTTTTTCATAGTTTATTTGTTTGTATTTGAATGTATTTTGAGGCT
6803054 T
1 T
6803055 AATTTGGGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.16, C:0.06, G:0.19, T:0.59
Consensus pattern (48 bp):
TCTGTTTTTCATAGTTTATTTGTTTGTATTTGAATGTATTTTGAGGCT
Found at i:6806613 original size:18 final size:18
Alignment explanation
Indices: 6806590--6806640 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 18
6806580 ATAATATTGG
**
6806590 ATTTTAATTTTTTTTAAT
1 ATTTTAATTTTTTAAAAT
*
6806608 ATTTTAAATTTTTAAAAAT
1 ATTTT-AATTTTTTAAAAT
*
6806627 ATTTTTATTTTTTA
1 ATTTTAATTTTTTA
6806641 TTTATGAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTAATTTTTTAAAAT
Found at i:6811616 original size:11 final size:11
Alignment explanation
Indices: 6811600--6811626 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
6811590 GTACAAGGGA
6811600 TTTTATGGTAC
1 TTTTATGGTAC
6811611 TTTTATGGTAC
1 TTTTATGGTAC
6811622 TTTTA
1 TTTTA
6811627 CATGAAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.07, G:0.15, T:0.59
Consensus pattern (11 bp):
TTTTATGGTAC
Found at i:6816069 original size:43 final size:43
Alignment explanation
Indices: 6816022--6816107 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
6816012 AAGAATTGGA
6816022 TAGATTTCATATTGAACTGATGAAAAGTCCACTGACATACAAG
1 TAGATTTCATATTGAACTGATGAAAAGTCCACTGACATACAAG
*
6816065 TAGATTTCATATTGAACTGATGAAAAGTCCATTGACATACAAG
1 TAGATTTCATATTGAACTGATGAAAAGTCCACTGACATACAAG
6816108 AAATTTTAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (43 bp):
TAGATTTCATATTGAACTGATGAAAAGTCCACTGACATACAAG
Found at i:6817376 original size:16 final size:17
Alignment explanation
Indices: 6817342--6817382 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
6817332 GTTGACATAT
6817342 TTTACAAATTTTAATTAA
1 TTTA-AAATTTTAATTAA
6817360 -TTAAAATATTTAA-TAA
1 TTTAAAAT-TTTAATTAA
6817376 TTTAAAA
1 TTTAAAA
6817383 AAAAAACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTAAAATTTTAATTAA
Found at i:6818181 original size:124 final size:126
Alignment explanation
Indices: 6817907--6818434 Score: 692
Period size: 124 Copynumber: 4.2 Consensus size: 126
6817897 TTGCAGTCGT
* * * *
6817907 GCCCACGTGTACGTGCTTTTGCTACAGTAGGTCCTGGAA-AAATTATTTCGAGTTGACATTTCTG
1 GCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTG
* * * * *
6817971 AGCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTATATGTGAAGAATTTGTGAAATTGC
66 AGCAAATAGTATAAAAAACGCTTCAACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
* * * *
6818032 GCCCTCCTGGACGTGCTTTTGCTACAGT-GGTCTTGGAAGAAATAATTTCGAGTTGACGTTTCTG
1 GCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTG
* * *
6818096 AGTAAATAGTAT-AAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
66 AGCAAATAGTATAAAAAACGCTTCAACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
* * * *
6818156 GCCCACGTGGACACGCTTTTACTACAGTAGGTCCT--AAAAAATTATTTCGAGTTGACGTTTCTG
1 GCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTG
* *
6818219 AGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTATT-TGAGAAGAATTTCTGAAATCGC
66 AGCAAATAGTATAAAAAACGCTTCAACCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGC
* * * * * *
6818280 GTCCTCATAGACGCGCTTTTGCTACAGTTGGTCCTAGAAGAAATAATTTCGAGTTGACGTTTCTG
1 GCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTG
* * * *
6818345 AACAAATAGTAT-AAAATCGCTTCTACTAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
66 AGCAAATAGTATAAAAAACGCTTCAACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
* *
6818405 ACCCACGTGGACGCACTTTTGCTACAGTAG
1 GCCCACGTGGACGCGCTTTTGCTACAGTAG
6818435 CATGTTTGGG
Statistics
Matches: 347, Mismatches: 49, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
123 37 0.11
124 144 0.41
125 129 0.37
126 37 0.11
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (126 bp):
GCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTG
AGCAAATAGTATAAAAAACGCTTCAACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
Found at i:6818370 original size:249 final size:249
Alignment explanation
Indices: 6817907--6818434 Score: 842
Period size: 249 Copynumber: 2.1 Consensus size: 249
6817897 TTGCAGTCGT
* * *
6817907 GCCCACGTGTACGTGCTTTTGCTACAGTAGGTCCTGGAAAAATTATTTCGAGTTGACATTTCTGA
1 GCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATTATTTCGAGTTGACATTTCTGA
* * *
6817972 GCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTATATGTGAAGAATTTGTGAAATTGCGCCCT
66 GCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTATATGAGAAGAATTTCTGAAATCGCGCCCT
* * * * * **
6818037 CCTGGACGTGCTTTTGCTACAGTGGTCTTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGTAAA
131 CATAGACGCGCTTTTGCTACAGTGGTCCTAGAAGAAATAATTTCGAGTTGACGTTTCTGAACAAA
6818102 TAGTATAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
196 TAGTATAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
* * *
6818156 GCCCACGTGGACACGCTTTTACTACAGTAGGTCCT-AAAAAATTATTTCGAGTTGACGTTTCTGA
1 GCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATTATTTCGAGTTGACATTTCTGA
* * *
6818220 GCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTATTTGAGAAGAATTTCTGAAATCGCGTCCT
66 GCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTATATGAGAAGAATTTCTGAAATCGCGCCCT
6818285 CATAGACGCGCTTTTGCTACAGTTGGTCCTAGAAGAAATAATTTCGAGTTGACGTTTCTGAACAA
131 CATAGACGCGCTTTTGCTACAG-TGGTCCTAGAAGAAATAATTTCGAGTTGACGTTTCTGAACAA
*
6818350 ATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
195 ATAGTATAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
* *
6818405 ACCCACGTGGACGCACTTTTGCTACAGTAG
1 GCCCACGTGGACGCGCTTTTGCTACAGTAG
6818435 CATGTTTGGG
Statistics
Matches: 254, Mismatches: 24, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
248 105 0.41
249 149 0.59
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (249 bp):
GCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATTATTTCGAGTTGACATTTCTGA
GCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTATATGAGAAGAATTTCTGAAATCGCGCCCT
CATAGACGCGCTTTTGCTACAGTGGTCCTAGAAGAAATAATTTCGAGTTGACGTTTCTGAACAAA
TAGTATAAAATCGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGC
Found at i:6822044 original size:18 final size:18
Alignment explanation
Indices: 6822013--6822047 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6822003 TTGTTGGCCA
6822013 TATGAACAAATGCAATGG
1 TATGAACAAATGCAATGG
* *
6822031 TATGACCAATTGCAATG
1 TATGAACAAATGCAATG
6822048 TGTAAGCTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (18 bp):
TATGAACAAATGCAATGG
Found at i:6823794 original size:17 final size:18
Alignment explanation
Indices: 6823774--6823807 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6823764 ATAAGTATGT
6823774 TTTAAT-TCTTTTAAAAG
1 TTTAATCTCTTTTAAAAG
*
6823791 TTTAATCTTTTTTAAAA
1 TTTAATCTCTTTTAAAA
6823808 TATCATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAATCTCTTTTAAAAG
Found at i:6824434 original size:36 final size:36
Alignment explanation
Indices: 6824387--6824463 Score: 147
Period size: 36 Copynumber: 2.2 Consensus size: 36
6824377 CACTAATGGA
6824387 AGAGTCAAGGATACTTGCCTATTGTAAAAGAAAACT
1 AGAGTCAAGGATACTTGCCTATTGTAAAAGAAAACT
6824423 AGAGTCAAGGATACTTGCCTATTGTAAAAGAAAACT
1 AGAGTCAAGGATACTTGCCTATTGTAAAAGAAAACT
6824459 A-AGTC
1 AGAGTC
6824464 CTAAATGGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 4 0.10
36 37 0.90
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.25
Consensus pattern (36 bp):
AGAGTCAAGGATACTTGCCTATTGTAAAAGAAAACT
Found at i:6834476 original size:16 final size:16
Alignment explanation
Indices: 6834441--6834480 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
6834431 TTGATAAAAT
* * *
6834441 TAAAACTAATTGTTAT
1 TAAAATTAATTGTCAG
6834457 TAAAATTAATTGTCAG
1 TAAAATTAATTGTCAG
6834473 TAAAATTA
1 TAAAATTA
6834481 TCAAATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.40
Consensus pattern (16 bp):
TAAAATTAATTGTCAG
Found at i:6834508 original size:16 final size:16
Alignment explanation
Indices: 6834484--6834522 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
6834474 AAAATTATCA
* *
6834484 AATTATTAATTGTATT
1 AATTGTTAATTATATT
6834500 AATTGTTAATTATATT
1 AATTGTTAATTATATT
6834516 AATTGTT
1 AATTGTT
6834523 GTAACAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (16 bp):
AATTGTTAATTATATT
Found at i:6834775 original size:19 final size:19
Alignment explanation
Indices: 6834748--6834793 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
6834738 TCTGTAGGGG
*
6834748 AAATGAAATTGAAAACTAA
1 AAATAAAATTGAAAACTAA
*
6834767 AAATAAAATTGAAAACTTA
1 AAATAAAATTGAAAACTAA
*
6834786 AACTAAAA
1 AAATAAAA
6834794 ACTTAAACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.22
Consensus pattern (19 bp):
AAATAAAATTGAAAACTAA
Found at i:6834794 original size:13 final size:13
Alignment explanation
Indices: 6834760--6834808 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
6834750 ATGAAATTGA
*
6834760 AAACTAAAAA-TA
1 AAACTAAAAACTT
* *
6834772 AAATTGAAAACTT
1 AAACTAAAAACTT
6834785 AAACTAAAAACTT
1 AAACTAAAAACTT
6834798 AAACATAAAAA
1 AAAC-TAAAAA
6834809 TAAAAATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
12 8 0.27
13 16 0.53
14 6 0.20
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.20
Consensus pattern (13 bp):
AAACTAAAAACTT
Found at i:6834881 original size:20 final size:20
Alignment explanation
Indices: 6834853--6834893 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
6834843 AATGTCGGGG
6834853 AAATGAAATTGAAAACATAA
1 AAATGAAATTGAAAACATAA
* *
6834873 AAATTAAATTGAAAACTTAA
1 AAATGAAATTGAAAACATAA
6834893 A
1 A
6834894 CTGTAAGGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.24
Consensus pattern (20 bp):
AAATGAAATTGAAAACATAA
Found at i:6834985 original size:16 final size:16
Alignment explanation
Indices: 6834964--6834996 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6834954 TATATTTTTT
6834964 AAACATAAAAAACTTA
1 AAACATAAAAAACTTA
*
6834980 AAACATAAAAAATTTA
1 AAACATAAAAAACTTA
6834996 A
1 A
6834997 TATATATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (16 bp):
AAACATAAAAAACTTA
Found at i:6835451 original size:17 final size:16
Alignment explanation
Indices: 6835396--6835454 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
6835386 TATTATAAAA
6835396 ATTATA-AAAATGTATT
1 ATTATATAAAAT-TATT
6835412 ATT-TATAAAATTATAT
1 ATTATATAAAATTAT-T
* *
6835428 ATAATATAAAGTTACTT
1 ATTATATAAAATTA-TT
6835445 ATTATATAAA
1 ATTATATAAA
6835455 TAATTAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
15 5 0.14
16 11 0.31
17 19 0.53
18 1 0.03
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (16 bp):
ATTATATAAAATTATT
Found at i:6860074 original size:23 final size:23
Alignment explanation
Indices: 6860044--6860200 Score: 113
Period size: 23 Copynumber: 6.7 Consensus size: 23
6860034 AATCTACCCT
* * *
6860044 ATTTGGACAGCTTTTATACATCA
1 ATTTGGACAGCATATATACAACA
*
6860067 ATTTGGACAGCATAAATACAACA
1 ATTTGGACAGCATATATACAACA
*
6860090 ATTTGGGCAGCATATATACAACA
1 ATTTGGACAGCATATATACAACA
* * * *
6860113 GTTT-GAGCAGCATTTTTACACCAA
1 ATTTGGA-CAGCATATATACAAC-A
**
6860137 AACTGGACAGCATATATACAACA
1 ATTTGGACAGCATATATACAACA
* * *
6860160 AATT-GAGCAGCATTTA-AGCATCAA
1 ATTTGGA-CAGCATATATA-CAAC-A
*
6860184 AATTGGACAGCATATAT
1 ATTTGGACAGCATATAT
6860201 GTAACAAATT
Statistics
Matches: 105, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
22 4 0.04
23 70 0.67
24 27 0.26
25 4 0.04
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.27
Consensus pattern (23 bp):
ATTTGGACAGCATATATACAACA
Found at i:6860155 original size:47 final size:47
Alignment explanation
Indices: 6860097--6860211 Score: 151
Period size: 47 Copynumber: 2.4 Consensus size: 47
6860087 ACAATTTGGG
** *
6860097 CAGCATATATACAACAGTTTGAGCAGCATTTTTA-CACCAAAACTGGA
1 CAGCATATATACAACAAATTGAGCAGCA-TTTAAGCACCAAAACTGGA
* *
6860144 CAGCATATATACAACAAATTGAGCAGCATTTAAGCATCAAAATTGGA
1 CAGCATATATACAACAAATTGAGCAGCATTTAAGCACCAAAACTGGA
**
6860191 CAGCATATATGTAACAAATTG
1 CAGCATATATACAACAAATTG
6860212 GTTCAACTCA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 4 0.07
47 56 0.93
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (47 bp):
CAGCATATATACAACAAATTGAGCAGCATTTAAGCACCAAAACTGGA
Found at i:6861113 original size:43 final size:42
Alignment explanation
Indices: 6861047--6861176 Score: 158
Period size: 43 Copynumber: 3.0 Consensus size: 42
6861037 AACTCGTACA
* *
6861047 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAA-CACATATCG
6861090 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGT-AACACATA-TCG
*
6861133 ATGCCAACGTCCTAGACGTGGTCTTACACGATAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-TAACACATATCG
6861176 A
1 A
6861177 AAATCCTATG
Statistics
Matches: 76, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
42 4 0.05
43 65 0.86
44 7 0.09
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAACACATATCG
Found at i:6862585 original size:10 final size:10
Alignment explanation
Indices: 6862528--6862586 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
6862518 TGATAAAAAA
*
6862528 TAAAAGTTA-
1 TAAAAATTAT
*
6862537 TAAAAATGAT
1 TAAAAATTAT
**
6862547 TAAATTTTAAT
1 TAAAAATT-AT
6862558 TAAAAA-TAT
1 TAAAAATTAT
6862567 TAAAAAATTAT
1 T-AAAAATTAT
6862578 TAAAAATTA
1 TAAAAATTA
6862587 GAATTTTTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
9 10 0.26
10 19 0.49
11 10 0.26
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.37
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:6862619 original size:20 final size:20
Alignment explanation
Indices: 6862596--6862694 Score: 67
Period size: 20 Copynumber: 4.5 Consensus size: 20
6862586 AGAATTTTTT
6862596 TTATAAAAATAGTAAAAAAA
1 TTATAAAAATAGTAAAAAAA
6862616 TTATAAAATTTTATAAAGTCATAAGAAAA
1 TTATAAAA----AT--AGT-A-AA-AAAA
*
6862645 TTATAAAAA-ATGTAAAGAAA
1 TTATAAAAATA-GTAAAAAAA
* *
6862665 -TATAAAATTAGTTAAAAAA
1 TTATAAAAATAGTAAAAAAA
6862684 TTATAAAAATA
1 TTATAAAAATA
6862695 TCGTACTAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 24
0.68 0.05 0.26
Matches are distributed among these distances:
19 14 0.23
20 21 0.34
21 2 0.03
22 2 0.03
23 2 0.03
24 2 0.03
25 1 0.02
26 3 0.05
27 1 0.02
28 2 0.03
29 12 0.19
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (20 bp):
TTATAAAAATAGTAAAAAAA
Found at i:6862863 original size:20 final size:19
Alignment explanation
Indices: 6862839--6862882 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
6862829 TTAAAGGGTC
6862839 TTTTTAATGCAT-TTTATAA
1 TTTTTAATG-ATCTTTATAA
*
6862858 TGTTTTTATGATCTTTATAA
1 T-TTTTAATGATCTTTATAA
6862878 TTTTT
1 TTTTT
6862883 TTTTCTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.64
Consensus pattern (19 bp):
TTTTTAATGATCTTTATAA
Found at i:6874259 original size:18 final size:17
Alignment explanation
Indices: 6874238--6874272 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6874228 TTATTATTTA
*
6874238 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6874256 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6874273 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6874266 original size:28 final size:27
Alignment explanation
Indices: 6874196--6874268 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
6874186 TTTATTATCA
*
6874196 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
6874224 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
6874251 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
6874269 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:6874363 original size:147 final size:149
Alignment explanation
Indices: 6874157--6874431 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
6874147 ATGATTATTG
*
6874157 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
6874222 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
6874287 AAAAATTTGTTTTGGTAAA
131 AAAAATTTGTTTTGGTAAA
*
6874306 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
6874369 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
6874432 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 95 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AAAAATTTGTTTTGGTAAA
Found at i:6874406 original size:18 final size:17
Alignment explanation
Indices: 6874385--6874419 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6874375 TTATTATTAA
*
6874385 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6874403 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6874420 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6874463 original size:54 final size:54
Alignment explanation
Indices: 6874405--6874583 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
6874395 ATTAAAATAT
*
6874405 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
6874459 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
6874522 TAT
53 -AC
*
6874525 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
6874579 ATAAT
1 ATAAT
6874584 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:6874526 original size:18 final size:17
Alignment explanation
Indices: 6874505--6874539 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6874495 TTATTATTAA
6874505 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
6874523 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
6874540 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:6874654 original size:18 final size:17
Alignment explanation
Indices: 6874615--6874646 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
6874605 TTTTAAATAA
6874615 TTAATATTAAATATATT
1 TTAATATTAAATATATT
6874632 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
6874647 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:6874671 original size:120 final size:120
Alignment explanation
Indices: 6874368--6874660 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
6874358 ATCATATTTA
6874368 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
6874433 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* *
6874488 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
6874553 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
6874609 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
6874661 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:6874771 original size:91 final size:91
Alignment explanation
Indices: 6874676--6874883 Score: 258
Period size: 91 Copynumber: 2.3 Consensus size: 91
6874666 TAATTATAAC
* * * *
6874676 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
6874740 TAATATAAAATTTCATAAAATTCTTGA
65 TAATATAAAATTTCATAAAATTCTTAA
* * *
6874767 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
* * * *
6874832 GATATATAATTTCATGAAATTGTTAA
66 AATATAAAATTTCATAAAATTCTTAA
*
6874858 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
6874884 CTAAAACCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
91 79 0.77
92 22 0.22
93 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATAAAATTTCATAAAATTCTTAA
Found at i:6875474 original size:14 final size:14
Alignment explanation
Indices: 6875455--6875485 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
6875445 AAAATATTAA
6875455 CAACAAATAGTTCC
1 CAACAAATAGTTCC
6875469 CAACAAATAGTTCC
1 CAACAAATAGTTCC
6875483 CAA
1 CAA
6875486 TTGCCAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.29, G:0.06, T:0.19
Consensus pattern (14 bp):
CAACAAATAGTTCC
Found at i:6878393 original size:21 final size:19
Alignment explanation
Indices: 6878367--6878411 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 19
6878357 ATTCAATTCA
6878367 ATTTATATTATTTTATTATTT
1 ATTTATATTATTTTA-T-TTT
*
6878388 ATTTATTTTATTTTATTTT
1 ATTTATATTATTTTATTTT
6878407 ATTTA
1 ATTTA
6878412 CTCTAGGGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.35
20 1 0.04
21 14 0.61
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (19 bp):
ATTTATATTATTTTATTTT
Found at i:6878395 original size:16 final size:17
Alignment explanation
Indices: 6878367--6878399 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
6878357 ATTCAATTCA
6878367 ATTTATATTATTTTATT
1 ATTTATATTATTTTATT
6878384 ATTTAT-TTATTTTATT
1 ATTTATATTATTTTATT
6878400 TTATTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTTATATTATTTTATT
Found at i:6878409 original size:10 final size:10
Alignment explanation
Indices: 6878368--6878410 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
6878358 TTCAATTCAA
*
6878368 TTTATATTAT
1 TTTATTTTAT
6878378 TTTATTATT-T
1 TTTATT-TTAT
6878388 ATTTATTTTAT
1 -TTTATTTTAT
6878399 TTTATTTTAT
1 TTTATTTTAT
6878409 TT
1 TT
6878411 ACTCTAGGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
10 20 0.69
11 9 0.31
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTATTTTAT
Found at i:6878516 original size:5 final size:5
Alignment explanation
Indices: 6878508--6878532 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
6878498 TAGTTTAATA
6878508 GTTAG GTTAG GTTAG GTTAG GTTAG
1 GTTAG GTTAG GTTAG GTTAG GTTAG
6878533 TTTATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (5 bp):
GTTAG
Found at i:6880631 original size:19 final size:20
Alignment explanation
Indices: 6880607--6880647 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
6880597 ATCATTTTTT
*
6880607 AGAAGCTC-GAAAGCTGAAC
1 AGAAGCTCAGAAAGCTAAAC
6880626 AGAAGCTCATGAAAGCTAAAC
1 AGAAGCTCA-GAAAGCTAAAC
6880647 A
1 A
6880648 AAAACCCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
21 11 0.58
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.12
Consensus pattern (20 bp):
AGAAGCTCAGAAAGCTAAAC
Found at i:6880701 original size:21 final size:21
Alignment explanation
Indices: 6880618--6880701 Score: 62
Period size: 21 Copynumber: 4.0 Consensus size: 21
6880608 GAAGCTCGAA
* *
6880618 AGCTGAACAGAAGCTCATGAA-
1 AGCTGAACAGAAACCCAT-AAG
* *
6880639 AGCTAAACAAAAACCCATAAG
1 AGCTGAACAGAAACCCATAAG
* * * * * *
6880660 GGTTGAACGGAAGCTCGTAAG
1 AGCTGAACAGAAACCCATAAG
6880681 AGCTGAACAGAAACCCATAAG
1 AGCTGAACAGAAACCCATAAG
6880702 GGTTAAACAG
Statistics
Matches: 44, Mismatches: 18, Indels: 2
0.69 0.28 0.03
Matches are distributed among these distances:
20 2 0.05
21 42 0.95
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.13
Consensus pattern (21 bp):
AGCTGAACAGAAACCCATAAG
Found at i:6880710 original size:21 final size:21
Alignment explanation
Indices: 6880642--6880713 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
6880632 TCATGAAAGC
*
6880642 TAAACAAAAACCCATAAGGGT
1 TAAACAGAAACCCATAAGGGT
* * * * * * *
6880663 TGAACGGAAGCTCGTAAGAGC
1 TAAACAGAAACCCATAAGGGT
*
6880684 TGAACAGAAACCCATAAGGGT
1 TAAACAGAAACCCATAAGGGT
6880705 TAAACAGAA
1 TAAACAGAA
6880714 GCTCAATAGA
Statistics
Matches: 36, Mismatches: 15, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (21 bp):
TAAACAGAAACCCATAAGGGT
Found at i:6880731 original size:21 final size:22
Alignment explanation
Indices: 6880703--6880759 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 22
6880693 ACCCATAAGG
6880703 GTTAAACAGAAGCTCAATA-GA
1 GTTAAACAGAAGCTCAATATGA
* * *
6880724 GTTCAACAGAAACT-TATATGA
1 GTTAAACAGAAGCTCAATATGA
6880745 GTTAAACAGAAGCTC
1 GTTAAACAGAAGCTC
6880760 GTGAGAGCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 3 0.10
21 26 0.90
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.23
Consensus pattern (22 bp):
GTTAAACAGAAGCTCAATATGA
Found at i:6880732 original size:42 final size:42
Alignment explanation
Indices: 6880623--6880777 Score: 143
Period size: 42 Copynumber: 3.7 Consensus size: 42
6880613 TCGAAAGCTG
* * *
6880623 AACAGAAGCTCATGAA-AGCTAAACAAAAACCCATAAGGGTTG
1 AACAGAAGCTCAT-AAGAGCTCAACAGAAACCCATAAGGGTTA
* * *
6880665 AACGGAAGCTCGTAAGAGCTGAACAGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTCAACAGAAACCCATAAGGGTTA
* ** * *
6880707 AACAGAAGCTCA-ATAGAGTTCAACAGAAACTTATATGAGTTA
1 AACAGAAGCTCATA-AGAGCTCAACAGAAACCCATAAGGGTTA
* * * *
6880749 AACAGAAGCTCGTGAGAGCTAAACGGAAA
1 AACAGAAGCTCATAAGAGCTCAACAGAAA
6880778 GTAAACACGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 3 0.03
42 89 0.97
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTCAACAGAAACCCATAAGGGTTA
Found at i:6885665 original size:3 final size:3
Alignment explanation
Indices: 6885657--6885692 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
6885647 AATCTAGTCC
* *
6885657 TAT TAT TAT TAT TAT TAT TAT CAT TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6885693 CCTTTTAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:6897803 original size:45 final size:40
Alignment explanation
Indices: 6897734--6897843 Score: 112
Period size: 40 Copynumber: 2.6 Consensus size: 40
6897724 TTCAATCTGG
* * * *
6897734 CTCCACTGTAACCTCAGGGGGATAAAATCTGCAATTCTCGGTCTA
1 CTCCACTGTAACCTCAGAGAGATAAAA-CTG--A-T-GCGATCTA
*
6897779 CTCCACTGTAACCTCAGAGAGATAAGACTGATGCGATCTA
1 CTCCACTGTAACCTCAGAGAGATAAAACTGATGCGATCTA
* *
6897819 CTCTACTGTAACTTCAGAGAGATAA
1 CTCCACTGTAACCTCAGAGAGATAA
6897844 GATCCTTTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
40 29 0.50
41 1 0.02
42 1 0.02
44 3 0.05
45 24 0.41
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (40 bp):
CTCCACTGTAACCTCAGAGAGATAAAACTGATGCGATCTA
Found at i:6897886 original size:44 final size:44
Alignment explanation
Indices: 6897823--6897977 Score: 122
Period size: 44 Copynumber: 3.5 Consensus size: 44
6897813 GATCTACTCT
* * *
6897823 ACTGTAACTTCAGAGAGATAAGATCCTTTAT-TTTAATCCGCTCC
1 ACTGTAACTTCAGGGAGATAAGAT-CTATATCTTCAATCCGCTCC
* * *
6897867 ACTGTAACTTCAGGGAGATAGGAT-TATATCTTCGATCTGCTCC
1 ACTGTAACTTCAGGGAGATAAGATCTATATCTTCAATCCGCTCC
* * ** * *
6897910 GCTGTAAC-TCAGGGAGACAAGATCTGCA-ATTCTTCGGTCTGTTCC
1 ACTGTAACTTCAGGGAGATAAGATCT--ATA-TCTTCAATCCGCTCC
6897955 ACTGTAA-TCTCAGGGAGATAAGA
1 ACTGTAACT-TCAGGGAGATAAGA
6897978 CTGATGTGAT
Statistics
Matches: 91, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
42 17 0.19
43 18 0.20
44 23 0.25
45 20 0.22
46 13 0.14
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
ACTGTAACTTCAGGGAGATAAGATCTATATCTTCAATCCGCTCC
Found at i:6897968 original size:88 final size:81
Alignment explanation
Indices: 6897859--6898106 Score: 223
Period size: 85 Copynumber: 2.9 Consensus size: 81
6897849 TTTATTTTAA
6897859 TCCGCTCCACTGTAA-CTTCAGGGAGATAGGATTATATCTTCGATCTGCTCCGCTGTAACTCAGG
1 TCCGCTCCACTGTAATC-TCAGGGAGATAGGATTATATCTT-GATCTGCTCCGCTGTAACTCAGG
*
6897923 GAGACAAGATCTGCAATTC
64 GAGATAAGATCTGCAA-TC
* * * * * * **
6897942 TTCGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACT-GAT-GTGATCTTCTCTACTGTAACTT
1 -TC---C-GCTCCACTGTAATCTCAGGGAGATAGGATTATATCTTGATCTGCTCCGCTGTAAC-T
* **
6898005 CAGAGAGATAAGATCCTTTAATC
60 CAGGGAGATAAGAT-CTGCAATC
* *
6898028 TCCGCTCCATTGTAATCTCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAAATCTCA
1 TCCGCTCCACTGTAATCTCAGGGAGATAGGATTA-TATC-TTGATCTGCTCCGCTGT-AA-CTCA
6898093 GGGAGATAAGATCT
62 GGGAGATAAGATCT
6898107 CTGGCTTCAT
Statistics
Matches: 128, Mismatches: 23, Indels: 25
0.73 0.13 0.14
Matches are distributed among these distances:
81 25 0.20
82 1 0.01
83 2 0.02
84 2 0.02
85 32 0.25
86 32 0.25
87 8 0.06
88 25 0.20
89 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (81 bp):
TCCGCTCCACTGTAATCTCAGGGAGATAGGATTATATCTTGATCTGCTCCGCTGTAACTCAGGGA
GATAAGATCTGCAATC
Found at i:6898095 original size:172 final size:170
Alignment explanation
Indices: 6897723--6898106 Score: 531
Period size: 172 Copynumber: 2.2 Consensus size: 170
6897713 AGACCTCTGG
* * * *
6897723 CTTCAATCTGGCTCCACTGTAACCTCAGGGGGATAAAATCTGCAATTCTCGGTCTACTCCACTGT
1 CTTCGATCT-GCTCCGCTGTAA-CTCAGGGAGATAAGATCTGCAATTCTCGGTCTACTCCACTGT
6897788 AACCTCAGAGAGATAAGACTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA
64 AACCTCAGAGAGATAAGACTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA
* *
6897853 TTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATAT
129 -TATAATCCGCTCCACTGTAACTTCAAGGAGATAGGATTATAT
* **
6897896 CTTCGATCTGCTCCGCTGTAACTCAGGGAGACAAGATCTGCAATTCTTCGGTCTGTTCCACTGTA
1 CTTCGATCTGCTCCGCTGTAACTCAGGGAGATAAGATCTGCAATTC-TCGGTCTACTCCACTGTA
* * * *
6897961 ATCTCAGGGAGATAAGACTGATGTGATCTTCTCTACTGTAACTTCAGAGAGATAAGATCCTTTA-
65 ACCTCAGAGAGATAAGACTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAT
* *
6898025 AT-CTCCGCTCCATTGTAA-TCTCAAGGAGATAGGATTACTAT
130 ATAATCCGCTCCACTGTAACT-TCAAGGAGATAGGATTA-TAT
*
6898066 CTTTGATCTGCTCCGCTGTAAATCTCAGGGAGATAAGATCT
1 CTTCGATCTGCTCCGCTGT-AA-CTCAGGGAGATAAGATCT
6898107 CTGGCTTCAT
Statistics
Matches: 189, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
168 1 0.01
169 30 0.16
170 22 0.12
171 24 0.13
172 104 0.55
173 8 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (170 bp):
CTTCGATCTGCTCCGCTGTAACTCAGGGAGATAAGATCTGCAATTCTCGGTCTACTCCACTGTAA
CCTCAGAGAGATAAGACTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATA
TAATCCGCTCCACTGTAACTTCAAGGAGATAGGATTATAT
Found at i:6906817 original size:41 final size:41
Alignment explanation
Indices: 6906770--6907061 Score: 133
Period size: 46 Copynumber: 6.8 Consensus size: 41
6906760 GATTAAAGGA
* * *
6906770 TCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGAAGATCAAATCAGG
* *
6906811 TCTTATCTCCCTG-AGATTACAGTGGA-ACAGACCGAAGAATTGCAGA
1 TCTTATCTCCCTGAAG-TTACAGTGGAGA-AGATC--A-AA-T-CAGG
* * * * **
6906857 TCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAT-ATAA
1 TCTTATCTCCCTGAAGTTACAGTGGAGAAGATC-AA-ATCA-GG
* ** * *
6906900 TCCTATCTCCCTG-AGTTACAGTGGAGCGGATTAAAATAAAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGAAGA-TCAAAT-CAGG
* * * **
6906942 ATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
1 -TCTTATCTCCCTGAAGTTACAGTGGAGAAGATCAAATCAGG
* * * * *
6906984 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGAAGATC--A-AA-T-CAGG
* * *
6907030 TCTTATCCCCCTGAGGTTACAGTGGAGCAGAT
1 TCTTATCTCCCTGAAGTTACAGTGGAGAAGAT
6907062 TGAAGCCAGA
Statistics
Matches: 191, Mismatches: 39, Indels: 37
0.72 0.15 0.14
Matches are distributed among these distances:
40 3 0.02
41 57 0.30
42 20 0.10
43 29 0.15
44 18 0.09
45 4 0.02
46 59 0.31
47 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (41 bp):
TCTTATCTCCCTGAAGTTACAGTGGAGAAGATCAAATCAGG
Found at i:6906983 original size:173 final size:170
Alignment explanation
Indices: 6906684--6907066 Score: 581
Period size: 173 Copynumber: 2.2 Consensus size: 170
6906674 TTGAAGCCAG
* * *
6906684 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGATT
6906749 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
6906814 TATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGC
131 TATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGC
*
6906854 AGATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATA-TAATCCTATCTCCCTGAG-TT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGATT
* * *
6906917 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
66 ACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCA
* * **
6906982 GGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGC
126 GGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGC
* * *
6907027 AGATCTTATCCCCCTGAGGTTACAGTGGAGCAGATTGAAG
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAG
6907067 CCAGAGGTCT
Statistics
Matches: 193, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
168 14 0.07
169 18 0.09
170 40 0.21
173 121 0.63
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (170 bp):
AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
TATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTGC
Found at i:6907034 original size:46 final size:45
Alignment explanation
Indices: 6906806--6907060 Score: 206
Period size: 46 Copynumber: 5.8 Consensus size: 45
6906796 GAAGATCACA
* * *
6906806 TCAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAAT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
* * *
6906851 TGCAGATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAG-AT
1 T-CAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
* * **
6906896 AT-A-ATCCTATCTCCCTGA-GTTACAGTGGAGCGGA-TTAA-AAT
1 -TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
** * * * * * *
6906937 AAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCA-
1 TCA-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
* * *
6906979 TCAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAAT
1 TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
*
6907024 TGCAGATCTTATCCCCCTGAGGTTACAGTGGAGCAGA
1 T-CAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGA
6907061 TTGAAGCCAG
Statistics
Matches: 165, Mismatches: 31, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
41 36 0.22
42 15 0.09
43 27 0.16
44 16 0.10
45 4 0.02
46 67 0.41
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (45 bp):
TCAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGACCGAAGAAT
Found at i:6907078 original size:131 final size:127
Alignment explanation
Indices: 6906857--6907095 Score: 277
Period size: 127 Copynumber: 1.9 Consensus size: 127
6906847 GAATTGCAGA
* * *
6906857 TCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAGTTACAGT
1 TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATATAATCCTATCCCCCTGAGTTACAGT
* * *
6906922 GGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAG-TTACAGTAGAGTAGATCGCATCAGG
66 GGAGCAGATTAAAACAAAGGATCTTATCTCCCT-AAGATTACAGTAGAGTAGATCGCATCAGG
* * * *
6906984 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTGCAGATCTTATCCCCCTGAGGTT
1 TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATA-T--A-ATCCTATCCCCCTGA-GTT
** *
6907048 ACAGTGGAGCAGATTGAAGCCAGAGG-TCTTATCTCCCTAAGATTACAG
61 ACAGTGGAGCAGATT-AAAACAAAGGATCTTATCTCCCTAAGATTACAG
6907096 CGGAGCAAGT
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
126 1 0.01
127 34 0.37
129 1 0.01
130 16 0.17
131 34 0.37
132 6 0.07
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (127 bp):
TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATATAATCCTATCCCCCTGAGTTACAGT
GGAGCAGATTAAAACAAAGGATCTTATCTCCCTAAGATTACAGTAGAGTAGATCGCATCAGG
Found at i:6907116 original size:21 final size:21
Alignment explanation
Indices: 6907092--6907135 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
6907082 CCCTAAGATT
6907092 ACAGCGGAGCA-AGTCGAAGAC
1 ACAGCGGAGCAGA-TCGAAGAC
*
6907113 ACAGCGGAGCGGATCGAAGAC
1 ACAGCGGAGCAGATCGAAGAC
6907134 AC
1 AC
6907136 TATCCTATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.36, C:0.25, G:0.34, T:0.05
Consensus pattern (21 bp):
ACAGCGGAGCAGATCGAAGAC
Found at i:6908729 original size:3 final size:3
Alignment explanation
Indices: 6908721--6908756 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
6908711 AATCTAGTCC
* *
6908721 TAT TAT TAT TAT TAT TAT TAT CAT TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6908757 CCTTTTAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:6916031 original size:26 final size:27
Alignment explanation
Indices: 6916002--6916059 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
6915992 AAATCCCAAA
*
6916002 TTTTCTTT-CTTTCCTTCCCT-TTTTAG
1 TTTTCTTTCCTTT-CTCCCCTGTTTTAG
*
6916028 TTTTCTTTCCTTTCTCCCCTGTTTTCG
1 TTTTCTTTCCTTTCTCCCCTGTTTTAG
6916055 TTTTC
1 TTTTC
6916060 CTATTCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 14 0.50
27 14 0.50
ACGTcount: A:0.02, C:0.29, G:0.05, T:0.64
Consensus pattern (27 bp):
TTTTCTTTCCTTTCTCCCCTGTTTTAG
Found at i:6927181 original size:16 final size:16
Alignment explanation
Indices: 6927144--6927183 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
6927134 TTAATAAAAT
* *
6927144 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
*
6927160 TTAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
6927176 TAAAATTA
1 TAAAATTA
6927184 TCAAATTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:6927253 original size:66 final size:67
Alignment explanation
Indices: 6927172--6927314 Score: 252
Period size: 68 Copynumber: 2.1 Consensus size: 67
6927162 AAATTAATTG
*
6927172 TTAGTAAAATTATCAAATTATTAATTG-TTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
1 TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAACAAAATCTAACATTT
6927236 GA
66 GA
*
6927238 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAATTG-ATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
6927303 TGA
65 TGA
6927306 TTAGTAAAA
1 TTAGTAAAA
6927315 CAAACTTGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
66 26 0.36
68 46 0.64
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (67 bp):
TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAACAAAATCTAACATTT
GA
Found at i:6927268 original size:9 final size:9
Alignment explanation
Indices: 6927256--6927283 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
6927246 TTTATCAAAT
6927256 TATTAATTG
1 TATTAATTG
6927265 TATTAATTG
1 TATTAATTG
6927274 TATTAATTG
1 TATTAATTG
6927283 T
1 T
6927284 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:6927420 original size:22 final size:23
Alignment explanation
Indices: 6927378--6927423 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
6927368 GTAAATAAAC
*
6927378 TTAAAATAAAAAACTATTATATT
1 TTAAAATAAAAAAATATTATATT
6927401 TTAAAATAAAAAAATA-TATATT
1 TTAAAATAAAAAAATATTATATT
6927423 T
1 T
6927424 AATATTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
TTAAAATAAAAAAATATTATATT
Found at i:6928293 original size:22 final size:22
Alignment explanation
Indices: 6928268--6928310 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
6928258 TATCCAAATA
*
6928268 ATAATAATAAAATAGTAGCAAT
1 ATAATAATAAAATAATAGCAAT
*
6928290 ATAATAGTAAAATAATAGCAA
1 ATAATAATAAAATAATAGCAA
6928311 AACTGCAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.60, C:0.05, G:0.09, T:0.26
Consensus pattern (22 bp):
ATAATAATAAAATAATAGCAAT
Found at i:6935307 original size:110 final size:109
Alignment explanation
Indices: 6935073--6935495 Score: 557
Period size: 110 Copynumber: 3.8 Consensus size: 109
6935063 GAATTTCGAG
* * * * * *
6935073 AGGATATTTGGCTATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGTACG-TTCCTC
1 AGGATATTTAGC-ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
* * * * ** **
6935135 AAATTTCTAAACGCGAAACCTTGCCTTATTTTGAAATTTTTTAAA
65 GAATTTCCAAACGCAAAACATTGCCTTATTTAAAAAAATTTTAAA
*
6935180 AGGATATTTAGCTATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
1 AGGATATTTAGC-ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
*
6935245 GAATTTCCCAAACGCAAAACATCGCCTTA-TTAAAAAAATTTTAAA
65 GAATTT-CCAAACGCAAAACATTGCCTTATTTAAAAAAATTTTAAA
* * * *
6935290 AAGATATTAAGTCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCATATTTTCTC
1 AGGATATTTAG-CATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
6935355 GAATTTCCAAACGCAAAACATTGCCTTATTTTAAAAAAAATTTTAAA
65 GAATTTCCAAACGCAAAACATTGCCTTA-TTT-AAAAAAATTTTAAA
6935402 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
1 AGGATATTTAG-CATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
*
6935467 GAATTTCCCAAACGCAAAGCATTGCCTTA
65 GAATTT-CCAAACGCAAAACATTGCCTTA
6935496 ATTGGAAATA
Statistics
Matches: 279, Mismatches: 28, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
107 25 0.09
109 46 0.16
110 86 0.31
111 21 0.08
112 80 0.29
113 21 0.08
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (109 bp):
AGGATATTTAGCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCG
AATTTCCAAACGCAAAACATTGCCTTATTTAAAAAAATTTTAAA
Found at i:6935989 original size:20 final size:20
Alignment explanation
Indices: 6935948--6935991 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6935938 TGTGTGTAAG
* *
6935948 TATATAAAAAAATATATGTA
1 TATATAAAAAAACATATATA
*
6935968 TATATAAAAAAACGTATATA
1 TATATAAAAAAACATATATA
6935988 TATA
1 TATA
6935992 AGGGAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (20 bp):
TATATAAAAAAACATATATA
Found at i:6936062 original size:3 final size:3
Alignment explanation
Indices: 6936001--6936042 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
6935991 AAGGGAAATT
* *
6936001 ATA ATA ATA ATG ATA ATA ATA ATA ATA AAA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6936043 TTATTATTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:6937662 original size:50 final size:50
Alignment explanation
Indices: 6937585--6938411 Score: 266
Period size: 50 Copynumber: 16.5 Consensus size: 50
6937575 ATCTTCAATT
* * * * *
6937585 GTTGTAGCTTCAATCTATTT-TGCTGCACCGCCGGGGGAGTAAAATTCACC
1 GTTGTGGCTTCAATCT-TTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * * * *
6937635 GTTGTGGCTTCAATCTTTTAAATTGCACTGTCGGGGAAGTGAGATTCGCC
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* ** * ** ** * * * * * *
6937685 ATCATAGCTTCAATCCGTTCCGCTGCATCACCTGGAAAGTAAGATTCGCC
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
** * * * *
6937735 GTTGTGGCTTCAATCTTTTAAGTTGCAATGTCAGGGAAGTGAGATTTACC
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * ** * * * * *
6937785 GTCGTAGCTTCAATCTTTTCCGCTCCATCGCCTGAGAAGTAAGATTCACC
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* ** * ** * * * *
6937835 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCAAGGAAGCAAGATCCGCT
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * * * * * *
6937885 GTTGTAGCTTCAATCTGTTCAA-CTGCACTGCCTGGGAAATAAGATTCACT
1 GTTGTGGCTTCAATCT-TTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * * ** * * * * * *
6937935 GTTGGGGCTTCGATCTTTTAAATTGCAATGTCGAGGAAGCAAGATCCGCT
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * * * * *
6937985 GTTGTAGCTTCAATCTGTTCAA-CTGCACTGCCTGGGAAATAAGATTCACC
1 GTTGTGGCTTCAATCT-TTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * * * * * * * * * *
6938035 GTTAAT-TCTTCGATCTTTTAAATTGCTA-TGTCGAGGAAGCAAGATCCGCT
1 GTT-GTGGCTTCAATCTTTTAAGTTGC-ACCGCCGGGGAAGTAAGATTCACC
* * * * * *
6938085 GTTGTAGCTTCAATCTATTCAA-CTGCACTGCCTGGGAAATAAGATTCACC
1 GTTGTGGCTTCAATCT-TTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * ** * ***
6938135 GTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTAAGATTCGTT
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * ** * * ** * * **
6938185 GTTGTAGCTTCAATCTGTTCCGCTGCATCGCTAGGGAAATGAGATTTGCC
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * ** *** * * *
6938235 GTTGTGACTTTAATCTTTTGAA-TTGCAATGTTAGGGAAGTAAAATTCGCT
1 GTTGTGGCTTCAATCTTTT-AAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * ** * * *
6938285 GTTGTAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCC
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
* * * * * ** * * * * *
6938335 ATCGTAGCTTCGATCTGTTCTGTTGCATCGCCAGGGAGGTGAGATTTACC
1 GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
*
6938385 GTTGTGGCTTCAATATTTTGAA-TTGCA
1 GTTGTGGCTTCAATCTTTT-AAGTTGCA
6938412 ATCTATGGTT
Statistics
Matches: 551, Mismatches: 212, Indels: 28
0.70 0.27 0.04
Matches are distributed among these distances:
49 19 0.03
50 518 0.94
51 14 0.03
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (50 bp):
GTTGTGGCTTCAATCTTTTAAGTTGCACCGCCGGGGAAGTAAGATTCACC
Found at i:6937772 original size:100 final size:100
Alignment explanation
Indices: 6937584--6938300 Score: 757
Period size: 100 Copynumber: 7.2 Consensus size: 100
6937574 AATCTTCAAT
* *** * * * * *
6937584 TGTTGTAGCTTCAATCTATTTTGCTGCACCGCCGGGGGAGTAAAATTCACCGTTGTGGCTTCAAT
1 TGTTGTAGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCACCGTTGTGGCTTCAAT
* * *
6937649 CTTTTAAATTGCACTGTCGGGGAAGTGAGATTCGC
66 CTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGC
** ** * ** * *
6937684 CATCATAGCTTCAATCCGTTCCGCTGCA-TCACCT-GGAAAGTAAGATTCGCCGTTGTGGCTTCA
1 TGTTGTAGCTTCAATCTGTTCAACTGCACT-GCCTGGGAAA-TAAGATTCACCGTTGTGGCTTCA
* * **
6937747 ATCTTTTAAGTTGCAATGTCAGGGAAGTGAGATTTAC
64 ATCTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGC
* * * ** * * *
6937784 CGTCGTAGCTTCAATCTTTTCCGCTCCA-TCGCCTGAGAAGTAAGATTCACCGTTGTGGCTTCAA
1 TGTTGTAGCTTCAATCTGTTCAACTGCACT-GCCTGGGAAATAAGATTCACCGTTGTGGCTTCAA
* * *
6937848 TCTTTTAAATTGCAATGTCAAGGAAGCAAGATCCGC
65 TCTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGC
* * *
6937884 TGTTGTAGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCACTGTTGGGGCTTCGAT
1 TGTTGTAGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCACCGTTGTGGCTTCAAT
* *
6937949 CTTTTAAATTGCAATGTC-GAGGAAGCAAGATCCGC
66 CTTTTAAATTGCAATGTCAG-GGAAGTAAGATTCGC
* * *
6937984 TGTTGTAGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCACCGTTAAT-TCTTCGA
1 TGTTGTAGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCACCGTT-GTGGCTTCAA
* * *
6938048 TCTTTTAAATTGCTATGTC-GAGGAAGCAAGATCCGC
65 TCTTTTAAATTGCAATGTCAG-GGAAGTAAGATTCGC
* *
6938084 TGTTGTAGCTTCAATCTATTCAACTGCACTGCCTGGGAAATAAGATTCACCGTTGTGGCTTCGAT
1 TGTTGTAGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCACCGTTGTGGCTTCAAT
* *
6938149 CTTTTAAATTGCAATGTCGGGGAAGTAAGATTCGT
66 CTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGC
** * ** * *
6938184 TGTTGTAGCTTCAATCTGTTCCGCTGCA-T-CGCTAGGGAAATGAGATTTGCCGTTGTGACTTTA
1 TGTTGTAGCTTCAATCTGTTCAACTGCACTGC-CT-GGGAAATAAGATTCACCGTTGTGGCTTCA
* * *
6938247 ATCTTTTGAATTGCAATGTTAGGGAAGTAAAATTCGC
64 ATCTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGC
6938284 TGTTGTAGCTTCAATCT
1 TGTTGTAGCTTCAATCT
6938301 TTTAAATTGC
Statistics
Matches: 533, Mismatches: 74, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
98 1 0.00
99 7 0.01
100 520 0.98
101 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (100 bp):
TGTTGTAGCTTCAATCTGTTCAACTGCACTGCCTGGGAAATAAGATTCACCGTTGTGGCTTCAAT
CTTTTAAATTGCAATGTCAGGGAAGTAAGATTCGC
Found at i:6938330 original size:150 final size:150
Alignment explanation
Indices: 6938135--6938413 Score: 405
Period size: 150 Copynumber: 1.9 Consensus size: 150
6938125 AAGATTCACC
* * *** *
6938135 GTTGTGGCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTAAGATTCGTTGTTGTAGCTTCAATC
1 GTTGTAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGTAAGATTCGCCATCGTAGCTTCAATC
* * * *
6938200 TGTTCCGCTGCATCGCTAGGGAAATGAGATTTGCCGTTGTGACTTTAATCTTTTGAATTGCAATG
66 TGTTCCGCTGCATCGCCAGGGAAATGAGATTTACCGTTGTGACTTCAATATTTTGAATTGCAATG
6938265 TTAGGGAAGTAAAATTCGCT
131 TTAGGGAAGTAAAATTCGCT
* *
6938285 GTTGTAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGTGAGATTCGCCATCGTAGCTTCGATC
1 GTTGTAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGTAAGATTCGCCATCGTAGCTTCAATC
* * ** *
6938350 TGTTCTGTTGCATCGCCAGGGAGGTGAGATTTACCGTTGTGGCTTCAATATTTTGAATTGCAAT
66 TGTTCCGCTGCATCGCCAGGGAAATGAGATTTACCGTTGTGACTTCAATATTTTGAATTGCAAT
6938414 CTATGGTTTT
Statistics
Matches: 112, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
150 112 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (150 bp):
GTTGTAGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGTAAGATTCGCCATCGTAGCTTCAATC
TGTTCCGCTGCATCGCCAGGGAAATGAGATTTACCGTTGTGACTTCAATATTTTGAATTGCAATG
TTAGGGAAGTAAAATTCGCT
Found at i:6939776 original size:22 final size:20
Alignment explanation
Indices: 6939728--6939778 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 20
6939718 GGCATCTCCT
*
6939728 TTTTTTTCTTTTCTTTTCTC
1 TTTTTTTCTTTCCTTTTCTC
*
6939748 --TTGTTCTTCTCCTTCTTCTC
1 TTTTTTTCTT-TCCTT-TTCTC
6939768 TTTTTTTCTTT
1 TTTTTTTCTTT
6939779 TTTTTTGTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 7
0.71 0.09 0.21
Matches are distributed among these distances:
18 7 0.29
19 4 0.17
20 5 0.21
21 1 0.04
22 7 0.29
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTTTTCTTTCCTTTTCTC
Found at i:6940786 original size:6 final size:6
Alignment explanation
Indices: 6940775--6940813 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
6940765 TTGACTTCTC
6940775 CTTTTT CTTTTT C-TTTT CTTTTTT CTTCTTT CTTTTT CT
1 CTTTTT CTTTTT CTTTTT C-TTTTT CTT-TTT CTTTTT CT
6940814 CTTATGATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 5 0.17
6 14 0.47
7 11 0.37
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
CTTTTT
Found at i:6940803 original size:15 final size:15
Alignment explanation
Indices: 6940775--6940816 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
6940765 TTGACTTCTC
*
6940775 CTTTTTCTTTTTCTTTT
1 CTTTTTC-TCTTC-TTT
6940792 CTTTTT-TCTTCTTT
1 CTTTTTCTCTTCTTT
6940806 CTTTTTCTCTT
1 CTTTTTCTCTT
6940817 ATGATTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 9 0.39
15 8 0.35
17 6 0.26
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
CTTTTTCTCTTCTTT
Found at i:6940837 original size:11 final size:11
Alignment explanation
Indices: 6940821--6940846 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
6940811 TCTCTTATGA
6940821 TTTTTTGATTT
1 TTTTTTGATTT
6940832 TTTTTTGATTT
1 TTTTTTGATTT
6940843 TTTT
1 TTTT
6940847 ATTTTTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (11 bp):
TTTTTTGATTT
Found at i:6944423 original size:110 final size:111
Alignment explanation
Indices: 6944189--6944724 Score: 742
Period size: 112 Copynumber: 4.8 Consensus size: 111
6944179 GAAATTCGAG
* * * * * * *
6944189 AGGATATTTGGCTATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGTACG-TTCCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
* * * ** **
6944251 AAATTTCCAAACGCGAAACATTGTCTTATTT-TGAAATTTTTTAAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTTAAAAAAAATTTTAAA
* * *
6944296 AGGATATTTAGCTATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGCTTGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
* **
6944361 GAATTTCCCAAACGCAAAACATTACCTTA-TT-AAAAATTTTTTAAA
66 GAATTT-CCAAACGCAAAACATTGCCTTATTTAAAAAAAATTTTAAA
* * *
6944406 AGGATATTAAGTCATTTGGTTGAACGAGAAAAATCAACACCCAGCACCTTAGGGCATGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
6944471 GAATTTCCAAACGCAAAACATTGCCTTATTTAAAAAAAAATTTTAAA
66 GAATTTCCAAACGCAAAACATTGCCTTATTT-AAAAAAAATTTTAAA
6944518 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
* **
6944583 GAATTTTCAAACGCAAAACATTGCCTTATTTTAAAAAAAAAAATTAAA
66 GAATTTCCAAACGCAAAACATTGCCTTA-TTT-AAAAAAAATTTTAAA
6944631 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
1 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
*
6944696 GAATTTCCCAAACGCAAAGCATTGCCTTA
66 GAATTT-CCAAACGCAAAACATTGCCTTA
6944725 ATTGGAAATA
Statistics
Matches: 389, Mismatches: 31, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
107 25 0.06
109 45 0.12
110 91 0.23
111 19 0.05
112 101 0.26
113 88 0.23
114 20 0.05
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (111 bp):
AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTC
GAATTTCCAAACGCAAAACATTGCCTTATTTAAAAAAAATTTTAAA
Found at i:6945248 original size:19 final size:17
Alignment explanation
Indices: 6945217--6945265 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
6945207 ATGTGTGTAA
*
6945217 GTATATA-AAAAAATATAT
1 GTATATATAAAAAA-A-AC
6945235 GTATATATAAAAAAAAC
1 GTATATATAAAAAAAAC
6945252 GTATATATATAAAA
1 GTATATATA-AAAA
6945266 GGGCAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 10 0.36
18 12 0.43
19 6 0.21
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (17 bp):
GTATATATAAAAAAAAC
Found at i:6945260 original size:21 final size:20
Alignment explanation
Indices: 6945218--6945265 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
6945208 TGTGTGTAAG
*
6945218 TATATAAAAAAATATATGTA
1 TATATAAAAAAATATATATA
**
6945238 TATATAAAAAAA-ACGTATA
1 TATATAAAAAAATATATATA
6945257 TATATAAAA
1 TATATAAAA
6945266 GGGCAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (20 bp):
TATATAAAAAAATATATATA
Found at i:6945282 original size:3 final size:3
Alignment explanation
Indices: 6945274--6945312 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
6945264 AAGGGCAATT
* *
6945274 ATA ATA ATA ATG ATA ATA ATA ATA ATA ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6945313 TTATTATTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:6950499 original size:41 final size:41
Alignment explanation
Indices: 6950454--6950538 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
6950444 ACTTAAACTT
6950454 TTTAATGTATTTAAGTGTTAATATTATTAGTTAATTATGAA
1 TTTAATGTATTTAAGTGTTAATATTATTAGTTAATTATGAA
6950495 TTTAATGTATTTAAGTGTTAATATTATTAGTTAATTATGAA
1 TTTAATGTATTTAAGTGTTAATATTATTAGTTAATTATGAA
6950536 TTT
1 TTT
6950539 TCATTAATCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (41 bp):
TTTAATGTATTTAAGTGTTAATATTATTAGTTAATTATGAA
Found at i:6951219 original size:29 final size:28
Alignment explanation
Indices: 6951142--6951222 Score: 74
Period size: 29 Copynumber: 2.8 Consensus size: 28
6951132 TTAAGTAAAT
* *
6951142 AAAT-AAAGTACAAAGGACTAAAGTTACC
1 AAATAAAAGTACAGA-GACTAAAATTACC
* * *
6951170 AATTTGAAAAGTATAGGGACTAAAATTGACC
1 AA-AT-AAAAGTACAGAGACTAAAATT-ACC
6951201 AAATAAAAGTACAGAGACTAAA
1 AAATAAAAGTACAGAGACTAAA
6951223 TCCACAACTT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
28 2 0.05
29 17 0.41
30 10 0.24
31 12 0.29
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.20
Consensus pattern (28 bp):
AAATAAAAGTACAGAGACTAAAATTACC
Found at i:6952328 original size:19 final size:17
Alignment explanation
Indices: 6952300--6952335 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 17
6952290 AATAAAATGC
6952300 GTATAATAAAATCAAAAT
1 GTATAAT-AAATCAAAAT
6952318 GTATAAATAAATCAAAAT
1 GTAT-AATAAATCAAAAT
6952336 AGTGCTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.28
Consensus pattern (17 bp):
GTATAATAAATCAAAAT
Found at i:6953679 original size:43 final size:43
Alignment explanation
Indices: 6953581--6953865 Score: 342
Period size: 43 Copynumber: 6.7 Consensus size: 43
6953571 CGCTATTGTC
* * * *
6953581 AACGCCGCTATAGATTAGGACCTTTAGCGGCAC-TTTTCCAAA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTACAAA
* * *
6953623 AACACCGCTATAGATCAAGACCTTTAGTGGCGCTTTTTATAAA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTACAAA
* *
6953666 AACGCCGCTATAGATTAGGACCTTTAGCGGCGCTTTTTACAAA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTACAAA
* *
6953709 AACGCCGCTATAGATCAGGACCTTTAGCGGCTCTTTTTACAAA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTACAAA
* * * *
6953752 AACGCCGCTATAGATC-AGAACCTTTAGCGACACATCTTT-CACA
1 AACGCCGCTATAGATCAAG-ACCTTTAGCGGCGC-TTTTTACAAA
* * *
6953795 AACGCCGCTATAGCTCAAGACCTTTAGCGGCGCTTTTTTCACA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTACAAA
* * *
6953838 AACACCGCTATAGCTCAAGACATTTAGC
1 AACGCCGCTATAGATCAAGACCTTTAGC
6953866 AACACTTTGA
Statistics
Matches: 213, Mismatches: 25, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
42 33 0.15
43 174 0.82
44 6 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTACAAA
Found at i:6953882 original size:43 final size:43
Alignment explanation
Indices: 6953708--6953890 Score: 149
Period size: 43 Copynumber: 4.3 Consensus size: 43
6953698 CTTTTTACAA
* * * ** * *
6953708 AAACGCCGCTATAGATCAGGACCTTTAGCGGCTCTTT-TTACAA
1 AAACGCCGCTATAGCTCAAGACATTTAGCAACACTTTATT-CAC
* * * *
6953751 AAACGCCGCTATAGATC-AGAACCTTTAGCGACACATCT-TTCAC
1 AAACGCCGCTATAGCTCAAG-ACATTTAGCAACAC-TTTATTCAC
* ** * *
6953794 AAACGCCGCTATAGCTCAAGACCTTTAGCGGCGCTTTTTTCAC
1 AAACGCCGCTATAGCTCAAGACATTTAGCAACACTTTATTCAC
*
6953837 AAACACCGCTATAGCTCAAGACATTTAGCAACACTTTGATT-AC
1 AAACGCCGCTATAGCTCAAGACATTTAGCAACACTTT-ATTCAC
6953880 AAACGCCGCTA
1 AAACGCCGCTA
6953891 AAAGTACCAT
Statistics
Matches: 119, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
42 3 0.03
43 108 0.91
44 8 0.07
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTATAGCTCAAGACATTTAGCAACACTTTATTCAC
Found at i:6954074 original size:14 final size:14
Alignment explanation
Indices: 6954055--6954084 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6954045 AAATCATGTT
6954055 AAATTTCAAGTTCA
1 AAATTTCAAGTTCA
6954069 AAATTTCAAGTTCA
1 AAATTTCAAGTTCA
6954083 AA
1 AA
6954085 TAGTGCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (14 bp):
AAATTTCAAGTTCA
Found at i:6964150 original size:7 final size:7
Alignment explanation
Indices: 6964139--6964177 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
6964129 CCCTAAATCT
6964139 CTAACTC
1 CTAACTC
* *
6964146 TTAACCC
1 CTAACTC
6964153 CTAACTC
1 CTAACTC
6964160 CTAACTC
1 CTAACTC
*
6964167 CTAACCC
1 CTAACTC
6964174 CTAA
1 CTAA
6964178 ACCTTAAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.31, C:0.44, G:0.00, T:0.26
Consensus pattern (7 bp):
CTAACTC
Done.