Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 22 of 189
Found at i:6964152 original size:21 final size:21
Alignment explanation
Indices: 6964129--6964178 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
6964119 GACCCTTAAA
*
6964129 CCCTAAATCTCTAACTCTTAAC
1 CCCTAAATC-CTAACTCCTAAC
*
6964151 CCCTAACTCCTAACTCCTAAC
1 CCCTAAATCCTAACTCCTAAC
6964172 CCCTAAA
1 CCCTAAA
6964179 CCTTAAATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.32, C:0.42, G:0.00, T:0.26
Consensus pattern (21 bp):
CCCTAAATCCTAACTCCTAAC
Found at i:6964962 original size:41 final size:40
Alignment explanation
Indices: 6964876--6965179 Score: 326
Period size: 41 Copynumber: 7.5 Consensus size: 40
6964866 CAGCGCTTTC
* *
6964876 CCAAAAACGCCGCTAAAGA-CAGAGTAATAGCGGCACTTCTT
1 CCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCA-TT-TT
6964917 -CAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCATTTT
1 CCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCATTTT
* ** * *
6964956 CACAAAAGCGCCGCTAAAGAATAGAGCATTAGCGGCGCTTTC
1 C-CAAAAACGCCGCTAAAGACCAGAGCATTAGCGGC-ATTTT
*
6964998 CCAAAAACGCCGCTAAAGACCAGACCATTAGCGGTGC-TTTT
1 CCAAAAACGCCGCTAAAGACCAGAGCATTAGC-G-GCATTTT
* * **
6965039 CCAAAAACGCAGTTAAAGACCAGAGCATTAGCGGCGCTTT
1 CCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCATTTT
*
6965079 CTCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTT
1 C-CAAAAACGCCGCTAAAGACCAGAGCATTAGCGGC-ATTTT
* * * *
6965121 CCAAAAGCGCCGCTAAAGACCAGAGCTTTAGTGGCGCTTTT
1 CCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGC-ATTTT
** *
6965162 TGAAAAACGCCACTAAAG
1 CCAAAAACGCCGCTAAAG
6965180 CCCCGAAAAC
Statistics
Matches: 227, Mismatches: 27, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
39 4 0.02
40 25 0.11
41 187 0.82
42 9 0.04
43 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (40 bp):
CCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCATTTT
Found at i:6965013 original size:82 final size:80
Alignment explanation
Indices: 6964870--6965179 Score: 381
Period size: 82 Copynumber: 3.8 Consensus size: 80
6964860 ATTTTGCAGC
* * * *
6964870 GCTTTCCCAAAAACGCCGCTAAAG-ACAGAGTAATAGCGGCAC-TTCTTCAAAAACGCCGCTAAA
1 GCTTTTCCAAAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTC-TCAAAAACGCCGCTAAA
6964933 GACCAGAGCATTAGCG
65 GACCAGAGCATTAGCG
* * *
6964949 GCATTTTCACAAAAGCGCCGCTAAAGAATAGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAA
1 GC-TTTTC-CAAAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAA
*
6965014 AGACCAGACCATTAGCGG
64 AGACCAGAGCATTAGC-G
* * *
6965032 TGCTTTTCCAAAAACGCAGTTAAAGACCAGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
1 -GCTTTTCCAAAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
6965097 GACCAGAGCATTAGCGG
65 GACCAGAGCATTAGC-G
* * * * * * *
6965114 CGCTTTTCCAAAAGCGCCGCTAAAGACCAGAGCTTTAGTGGCGCTTTTTGAAAAACGCCACTAAA
1 -GCTTTTCCAAAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAA
6965179 G
65 G
6965180 CCCCGAAAAC
Statistics
Matches: 201, Mismatches: 24, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
79 2 0.01
80 4 0.02
81 16 0.08
82 168 0.84
83 9 0.04
84 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (80 bp):
GCTTTTCCAAAAACGCCGCTAAAGAACAGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAG
ACCAGAGCATTAGCG
Found at i:6965091 original size:123 final size:122
Alignment explanation
Indices: 6964868--6965179 Score: 412
Period size: 123 Copynumber: 2.5 Consensus size: 122
6964858 ACATTTTGCA
* * * *
6964868 GCGCTTTCCCAAAAACGCCGCTAAAGA-CAGAGTAATAGCGGCACTTCTTCAAAAACGCCGCTAA
1 GCGCTTTCCCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTT-TTCAAAAACGCAGCTAA
* * *
6964932 AGACCAGAGCATTAGCGGCATTTTCACAAAAGCGCCGCTAAAGAATAGAGCATTAGCG
65 AGACCAGAGCATTAGCGGCACTTTCACAAAAACGCCGCTAAAGAACAGAGCATTAGCG
* * *
6964990 GCGCTTTCCCAAAAACGCCGCTAAAGACCAGACCATTAGCGGTGCTTTTCCAAAAACGCAGTTAA
1 GCGCTTTCCCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTT-CAAAAACGCAGCTAA
* * *
6965055 AGACCAGAGCATTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGACCAGAGCATTAGCG
65 AGACCAGAGCATTAGCGGCACTTTCACAAAAACGCCGCTAAAGAACAGAGCATTAGCG
* * * * *
6965113 GCGCTTTTCCAAAAGCGCCGCTAAAGACCAGAGCTTTAGTGGCGCTTTTTGAAAAACGCCA-CTA
1 GCGCTTTCCCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGC-TTTTCAAAAACG-CAGCTA
6965177 AAG
64 AAG
6965180 CCCCGAAAAC
Statistics
Matches: 165, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
122 29 0.18
123 130 0.79
124 6 0.04
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (122 bp):
GCGCTTTCCCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTCAAAAACGCAGCTAAA
GACCAGAGCATTAGCGGCACTTTCACAAAAACGCCGCTAAAGAACAGAGCATTAGCG
Found at i:6965341 original size:40 final size:41
Alignment explanation
Indices: 6965236--6965351 Score: 116
Period size: 40 Copynumber: 2.9 Consensus size: 41
6965226 CGCTTTTTGG
*
6965236 AAAA-CGCTGCTAATTCTT-ATTTTTAGCGGC-GTTTTCTA
1 AAAAGCGCTGCTAATACTTGATTTTTAGCGGCGGTTTTCTA
** * *
6965274 AAAAGCGCTGCTAATACGCGATCTTTAGTGGCGGTATTT-T-
1 AAAAGCGCTGCTAATACTTGATTTTTAGCGGCGGT-TTTCTA
* * *
6965314 AAAAGCGCCGCTAATGCTTGATTTTTAGCGGCGTTTTT
1 AAAAGCGCTGCTAATACTTGATTTTTAGCGGCGGTTTT
6965352 TATACAAACG
Statistics
Matches: 62, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
38 4 0.06
39 14 0.23
40 38 0.61
41 3 0.05
42 3 0.05
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (41 bp):
AAAAGCGCTGCTAATACTTGATTTTTAGCGGCGGTTTTCTA
Found at i:6970219 original size:38 final size:36
Alignment explanation
Indices: 6970147--6970220 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 36
6970137 TAAATTGCAT
*
6970147 AAAATTAAAATAAAATAAAGTACTAAATTACTAAAA
1 AAAATTAAAATAAAATAAAGTACTAAAGTACTAAAA
6970183 AAAATTAATAAATAAAATAAA-TAC-AATAGTAGCTAAAA
1 AAAATT-A-AAATAAAATAAAGTACTAA-AGTA-CTAAAA
6970221 CAAGATACGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 8 0.24
37 7 0.21
38 18 0.55
ACGTcount: A:0.66, C:0.05, G:0.04, T:0.24
Consensus pattern (36 bp):
AAAATTAAAATAAAATAAAGTACTAAAGTACTAAAA
Found at i:6977497 original size:34 final size:34
Alignment explanation
Indices: 6977450--6977546 Score: 117
Period size: 34 Copynumber: 2.9 Consensus size: 34
6977440 ATAAACCAGA
*
6977450 GTTTAGAGTTTTTAAAAAAATTAATTAACCT-AG
1 GTTTAGAGTTTTTAAAAAAATTAATTAAACTAAG
* *
6977483 GTTTTAG-GTGTTTTAAATAAATTAATTAAATTAAG
1 G-TTTAGAGT-TTTTAAAAAAATTAATTAAACTAAG
* *
6977518 GTATAGAGTTTTTAAGAAAATTAATTAAA
1 GTTTAGAGTTTTTAAAAAAATTAATTAAA
6977547 TTAGGGTTAG
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
33 3 0.06
34 46 0.85
35 5 0.09
ACGTcount: A:0.43, C:0.02, G:0.13, T:0.41
Consensus pattern (34 bp):
GTTTAGAGTTTTTAAAAAAATTAATTAAACTAAG
Found at i:6977564 original size:34 final size:32
Alignment explanation
Indices: 6977452--6977563 Score: 98
Period size: 34 Copynumber: 3.3 Consensus size: 32
6977442 AAACCAGAGT
* ** *
6977452 TTAGAGTTTTTAAAAAAATTAATTAACCTAGGTT
1 TTAGA-TTTTTTAAAAAATTAATTAAATTAGG-G
* * *
6977486 TTAGGTGTTTTAAATAAATTAATTAAATTAAGG
1 TTAGATTTTTTAAA-AAATTAATTAAATTAGGG
*
6977519 TATAGAGTTTTTAAGAAAATTAATTAAATTAGGG
1 T-TAGATTTTTTAA-AAAATTAATTAAATTAGGG
*
6977553 TTAGTTTTTTT
1 TTAGATTTTTT
6977564 TTTAAAATAA
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
33 16 0.26
34 45 0.73
35 1 0.02
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (32 bp):
TTAGATTTTTTAAAAAATTAATTAAATTAGGG
Found at i:6977785 original size:125 final size:126
Alignment explanation
Indices: 6977629--6978146 Score: 715
Period size: 125 Copynumber: 4.2 Consensus size: 126
6977619 AAGATTTTGT
* * * * * ** * *
6977629 TTTTTTTACAGTAGTTTCAGAATAATTAATTTTGAGAAGACGACTCTGAAAAGATAATGTTAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAATGTCAAAA
* * * * *
6977694 ACGCTTCAAGCAGGATACACTATTATCAAAATTACTGAAAAAAACT-CCACGTGGACGCTA
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTC
* * *
6977754 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAAATGGTTCTG-AAAAATAATTTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAATGTCAAAA
* * *
6977818 ATGCTTCAAGCAGGATGCACTGTCAGTAAATTTACTGAAAAAAACTCCCACGTGGACGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTC
* *
6977879 TTTTTCTACAGTAGTTCTTG-AAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAATGTCAAAA
* * ** *
6977943 ACGCTTAAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAGGCTCCCACGTGGATGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTC
*
6978004 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAAT-A-GTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAATGTCAAAA
**
6978067 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTG-AAAAAACTCCCACGTGGACTATC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTC
*
6978127 TTTTTCTACAATAGTTCCTG
1 TTTTTCTACAGTAGTTCCTG
6978147 TTTGGCCTTA
Statistics
Matches: 346, Mismatches: 44, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
123 37 0.11
124 119 0.34
125 157 0.45
126 33 0.10
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAATGTCAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTC
Found at i:6977945 original size:249 final size:250
Alignment explanation
Indices: 6977629--6978143 Score: 716
Period size: 249 Copynumber: 2.1 Consensus size: 250
6977619 AAGATTTTGT
* * * *
6977629 TTTTTTTACAGTAGTT-TCAGAATAATTAATTTTGAGAAGACGACTCTGAAAAGATAATGTTAAA
1 TTTTTCTACAGTAGTTCTCAGAATAAATAATTTTGAGAAGACGACTCTGAAAAAATAATGTCAAA
* * * *
6977693 AACGCTTCAAGCAGGATACACTATTATCAAAATTACTGAAAAAAACT-CCACGTGGACGCTATTT
66 AACGCTTAAAGCAAGATACACTATCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTATTT
* * * *
6977757 TTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAAATGGTTCTG-AAAAATAATTTCAAAAATG
131 TTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAAACGGTTCTGAAAAAAT-A-GTCAAAAACG
* * *
6977821 CTTCAAGCAGGATGCACTGTCAGTAAATTTACTGAAAAAAACTCCCACGTGGACGCTC
194 CTTCAAGCAGGATGCACTGTCAGCAAAATTACTG-AAAAAACTCCCACGTGGACGATC
* ** *
6977879 TTTTTCTACAGTAGTTCT-TGAA-AAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAA
1 TTTTTCTACAGTAGTTCTCAGAATAAATAATTTTGAGAAGACGACTCTGAAAAAATAATGTCAAA
* * ** * *
6977942 AACGCTTAAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAAGGCTCCCACGTGGATGCTCTTT
66 AACGCTTAAAGCAAGATACACTATCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTATTT
*
6978007 TTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAGTCAAAAACGCT
131 TTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAAACGGTTCTGAAAAAATAGTCAAAAACGCT
*
6978072 TCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAACTCCCACGTGGACTATC
196 TCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAACTCCCACGTGGACGATC
*
6978127 TTTTTCTACAATAGTTC
1 TTTTTCTACAGTAGTTC
6978144 CTGTTTGGCC
Statistics
Matches: 234, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
248 37 0.16
249 114 0.49
250 76 0.32
251 7 0.03
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (250 bp):
TTTTTCTACAGTAGTTCTCAGAATAAATAATTTTGAGAAGACGACTCTGAAAAAATAATGTCAAA
AACGCTTAAAGCAAGATACACTATCAGCAAAATTACTGAAAAAAACTCCCACGTGGACGCTATTT
TTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAAACGGTTCTGAAAAAATAGTCAAAAACGCT
TCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAACTCCCACGTGGACGATC
Found at i:6979476 original size:15 final size:15
Alignment explanation
Indices: 6979456--6979495 Score: 80
Period size: 15 Copynumber: 2.7 Consensus size: 15
6979446 TAATATTGTT
6979456 ATTACTTAATGTTGC
1 ATTACTTAATGTTGC
6979471 ATTACTTAATGTTGC
1 ATTACTTAATGTTGC
6979486 ATTACTTAAT
1 ATTACTTAAT
6979496 ATACTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (15 bp):
ATTACTTAATGTTGC
Found at i:6983281 original size:25 final size:24
Alignment explanation
Indices: 6983244--6983295 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
6983234 ACTGTTATAA
* *
6983244 AAAATTATAAAAT-AAAAACTAATT
1 AAAATTACAAAATGAAAAAAT-ATT
6983268 AAAATTACATAAATGAAAAAATATT
1 AAAATTACA-AAATGAAAAAATATT
6983293 AAA
1 AAA
6983296 TAATATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (24 bp):
AAAATTACAAAATGAAAAAATATT
Found at i:6983492 original size:12 final size:12
Alignment explanation
Indices: 6983475--6983499 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6983465 AGAGAGCTTT
6983475 GAGAAATTTAGG
1 GAGAAATTTAGG
6983487 GAGAAATTTAGG
1 GAGAAATTTAGG
6983499 G
1 G
6983500 GCTTTTTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24
Consensus pattern (12 bp):
GAGAAATTTAGG
Found at i:6986971 original size:36 final size:37
Alignment explanation
Indices: 6986931--6987003 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
6986921 GAAAAGAAAA
6986931 TGAAATTTTAAG-AAAAAATATGAAAAATGAAAAAGG
1 TGAAATTTTAAGAAAAAAATATGAAAAATGAAAAAGG
6986967 TGAAATTTTAAGAAAAAAATATGAAAAATGAAAAAGG
1 TGAAATTTTAAGAAAAAAATATGAAAAATGAAAAAGG
6987004 ATTGAGAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 12 0.33
37 24 0.67
ACGTcount: A:0.62, C:0.00, G:0.16, T:0.22
Consensus pattern (37 bp):
TGAAATTTTAAGAAAAAAATATGAAAAATGAAAAAGG
Found at i:6995807 original size:21 final size:21
Alignment explanation
Indices: 6995783--6995845 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
6995773 TGGAATATAC
6995783 CTTGTCTTGCAAATTGATTGT
1 CTTGTCTTGCAAATTGATTGT
* **
6995804 CTTGT-TTG-GAA-T-A-TAC
1 CTTGTCTTGCAAATTGATTGT
6995820 CTTGTCTTGCAAATTGATTGT
1 CTTGTCTTGCAAATTGATTGT
6995841 CTTGT
1 CTTGT
6995846 TAGACTATTG
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
16 6 0.19
17 4 0.13
18 3 0.10
19 3 0.10
20 4 0.13
21 11 0.35
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.48
Consensus pattern (21 bp):
CTTGTCTTGCAAATTGATTGT
Found at i:6995811 original size:37 final size:37
Alignment explanation
Indices: 6995763--6995846 Score: 159
Period size: 37 Copynumber: 2.3 Consensus size: 37
6995753 GCAAATTTCT
*
6995763 TTGTTTTGTTTGGAATATACCTTGTCTTGCAAATTGA
1 TTGTCTTGTTTGGAATATACCTTGTCTTGCAAATTGA
6995800 TTGTCTTGTTTGGAATATACCTTGTCTTGCAAATTGA
1 TTGTCTTGTTTGGAATATACCTTGTCTTGCAAATTGA
6995837 TTGTCTTGTT
1 TTGTCTTGTT
6995847 AGACTATTGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.19, C:0.12, G:0.19, T:0.50
Consensus pattern (37 bp):
TTGTCTTGTTTGGAATATACCTTGTCTTGCAAATTGA
Found at i:7001342 original size:45 final size:45
Alignment explanation
Indices: 7001304--7001459 Score: 177
Period size: 45 Copynumber: 3.6 Consensus size: 45
7001294 CTTACCCAGC
*
7001304 ACATGGAAAGAGGTGGAAAACAAAAACTATGATAACTTACTTAGA
1 ACATGGAAAGAAGTGGAAAACAAAAACTATGATAACTTACTTAGA
* * *
7001349 ACATGGAAAGAAGTGGAAAAGAAAGAC-----TAA-TGA---AGA
1 ACATGGAAAGAAGTGGAAAACAAAAACTATGATAACTTACTTAGA
* *
7001385 CACATGGAAAGAGGTGGAAAACAAAAACTATGATAACTTACTTATA
1 -ACATGGAAAGAAGTGGAAAACAAAAACTATGATAACTTACTTAGA
*
7001431 ACATGGAAAGAAGTGGAAAACAAAGACTA
1 ACATGGAAAGAAGTGGAAAACAAAAACTA
7001460 ATGAAGACAA
Statistics
Matches: 90, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
36 3 0.03
37 24 0.27
39 2 0.02
40 3 0.03
42 3 0.03
43 2 0.02
45 51 0.57
46 2 0.02
ACGTcount: A:0.51, C:0.10, G:0.22, T:0.17
Consensus pattern (45 bp):
ACATGGAAAGAAGTGGAAAACAAAAACTATGATAACTTACTTAGA
Found at i:7001406 original size:82 final size:82
Alignment explanation
Indices: 7001303--7001472 Score: 315
Period size: 82 Copynumber: 2.1 Consensus size: 82
7001293 ACTTACCCAG
7001303 CACATGGAAAGAGGTGGAAAACAAAAACTATGATAACTTACTTAGAACATGGAAAGAAGTGGAAA
1 CACATGGAAAGAGGTGGAAAACAAAAACTATGATAACTTACTTAGAACATGGAAAGAAGTGGAAA
*
7001368 AGAAAGACTAATGAAGA
66 ACAAAGACTAATGAAGA
*
7001385 CACATGGAAAGAGGTGGAAAACAAAAACTATGATAACTTACTTATAACATGGAAAGAAGTGGAAA
1 CACATGGAAAGAGGTGGAAAACAAAAACTATGATAACTTACTTAGAACATGGAAAGAAGTGGAAA
7001450 ACAAAGACTAATGAAGA
66 ACAAAGACTAATGAAGA
7001467 CA-ATGG
1 CACATGG
7001473 GGAGTATATA
Statistics
Matches: 86, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
81 4 0.05
82 82 0.95
ACGTcount: A:0.51, C:0.11, G:0.22, T:0.16
Consensus pattern (82 bp):
CACATGGAAAGAGGTGGAAAACAAAAACTATGATAACTTACTTAGAACATGGAAAGAAGTGGAAA
ACAAAGACTAATGAAGA
Found at i:7004380 original size:56 final size:56
Alignment explanation
Indices: 7004318--7004433 Score: 232
Period size: 56 Copynumber: 2.1 Consensus size: 56
7004308 GCAAACCATT
7004318 AAATGTTTTCTGTAGGATGTTATAAACTAAGGCACCAAATACAGAGATAAACCTAA
1 AAATGTTTTCTGTAGGATGTTATAAACTAAGGCACCAAATACAGAGATAAACCTAA
7004374 AAATGTTTTCTGTAGGATGTTATAAACTAAGGCACCAAATACAGAGATAAACCTAA
1 AAATGTTTTCTGTAGGATGTTATAAACTAAGGCACCAAATACAGAGATAAACCTAA
7004430 AAAT
1 AAAT
7004434 ATTTAAAAAG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.27
Consensus pattern (56 bp):
AAATGTTTTCTGTAGGATGTTATAAACTAAGGCACCAAATACAGAGATAAACCTAA
Found at i:7006247 original size:71 final size:71
Alignment explanation
Indices: 7006072--7006285 Score: 288
Period size: 71 Copynumber: 3.0 Consensus size: 71
7006062 ACTTAAATCG
* * *
7006072 ACAATTCCAATCAGAATCAATAATTACAAGCACGAAATTGAATAACTCTACAACTAATTAACT--
1 ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATTAAATAATTCTACAACTAATTAACTAC
7006135 TAACTA
66 TAACTA
* * * *
7006141 GCAATTGCAATCAGAATCAATAATTACAAGCACTAAACTAAATAATTCTACAACTAGTTAACTAC
1 ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATTAAATAATTCTACAACTAATTAACTAC
7006206 TAACTA
66 TAACTA
* * * * * *
7006212 ACAATTCCAATAAGAATCCATAATTACAAGTACTAAATTATATAATTCTACCATTAATTAACTAC
1 ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATTAAATAATTCTACAACTAATTAACTA-
7006277 CTAACTA
65 CTAACTA
7006284 AC
1 AC
7006286 CCGAACCCGA
Statistics
Matches: 125, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
69 56 0.45
71 60 0.48
72 9 0.07
ACGTcount: A:0.47, C:0.20, G:0.05, T:0.28
Consensus pattern (71 bp):
ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATTAAATAATTCTACAACTAATTAACTAC
TAACTA
Found at i:7006573 original size:18 final size:18
Alignment explanation
Indices: 7006539--7006573 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7006529 ATGATCAACG
* *
7006539 ATGAAAGTTAAAGAAAAC
1 ATGAAAATTAAAAAAAAC
7006557 ATGAAAATTAAAAAAAA
1 ATGAAAATTAAAAAAAA
7006574 AAGAAAAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.03, G:0.11, T:0.17
Consensus pattern (18 bp):
ATGAAAATTAAAAAAAAC
Found at i:7009084 original size:20 final size:19
Alignment explanation
Indices: 7009061--7009100 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
7009051 TTTCAAAACG
7009061 AAAAGAAAAAAATAAAAAAT
1 AAAAGAAAAAAA-AAAAAAT
*
7009081 AAAAGAAAAATAAAAAAAT
1 AAAAGAAAAAAAAAAAAAT
7009100 A
1 A
7009101 GAGAGCTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10
Consensus pattern (19 bp):
AAAAGAAAAAAAAAAAAAT
Found at i:7010490 original size:87 final size:87
Alignment explanation
Indices: 7010381--7010906 Score: 917
Period size: 87 Copynumber: 6.0 Consensus size: 87
7010371 TTGTAATCTC
* ** * * *
7010381 CGATCTGCTTCACTGTCGACGCAGGAGGGCAAGATCTGCTATCTTTAATCAGCTCCACTGCAACT
1 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
7010446 GATGGAGGCAAGGCTTTGTTTT
66 GATGGAGGCAAGGCTTTGTTTT
*
7010468 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGTTCCACTGCAACC
1 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
7010533 GATGGAGGCAAGGCTTTGTTTT
66 GATGGAGGCAAGGCTTTGTTTT
7010555 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
1 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
*
7010620 GATGGAGGCAAGGCTTTATTTT
66 GATGGAGGCAAGGCTTTGTTTT
7010642 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
1 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
*
7010707 GACGGAGGCAAGGCTTTGTTTT
66 GATGGAGGCAAGGCTTTGTTTT
*
7010729 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATTTGCTATCTTTAACCAGCTCCACTGCAACC
1 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
7010794 GATGGAGGCAAGGCTTTGTTTT
66 GATGGAGGCAAGGCTTTGTTTT
* * * * *
7010816 CGATCTGCTTCGCTGTTAACGCAGAAAGGTAAGATCTGCTATCTTTAACTATCTCCACTACAACC
1 CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
7010881 GATGGAGGCAAGGCTTTGTTTT
66 GATGGAGGCAAGGCTTTGTTTT
7010903 CGAT
1 CGAT
7010907 TTTCACTAAT
Statistics
Matches: 420, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 420 1.00
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.29
Consensus pattern (87 bp):
CGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACC
GATGGAGGCAAGGCTTTGTTTT
Found at i:7015708 original size:34 final size:33
Alignment explanation
Indices: 7015668--7015778 Score: 136
Period size: 34 Copynumber: 3.3 Consensus size: 33
7015658 GAAATTTTTT
7015668 AAAAATTAATTAAATTAGGTTTTAGGGGTTTTAA
1 AAAAATTAATTAAATTAGG-TTTAGGGGTTTTAA
** *
7015702 GTAAATTAATTAAATTAAGGTTTAGGGTTTTTAA
1 AAAAATTAATTAAATT-AGGTTTAGGGGTTTTAA
*
7015736 AAAAATTAATTAAATTAGGGTTTA--TGTTTTAA
1 AAAAATTAATTAAATTA-GGTTTAGGGGTTTTAA
*
7015768 AAAAAATAATT
1 AAAAATTAATT
7015779 TTGTGTTTAG
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
32 16 0.24
33 1 0.01
34 47 0.70
35 3 0.04
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.41
Consensus pattern (33 bp):
AAAAATTAATTAAATTAGGTTTAGGGGTTTTAA
Found at i:7016094 original size:126 final size:123
Alignment explanation
Indices: 7015862--7016248 Score: 444
Period size: 126 Copynumber: 3.1 Consensus size: 123
7015852 ATTTTGTTTT
* * * * *
7015862 TTTTTCTACAGTAGTTTCTGAAAAATTAATTTTGAGAAGACGGTTATGAAAAGATAATGTCAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAA-TAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTAAAAA
* * * *
7015927 ATGCTTCGAGTAGGATGCACTGTTAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTC
65 ACGCTTCAAGCAGGATGCACTGTCAGCAAAA-TACT-AAAAAAGCTCCCACGTGGACGCTC
* * *
7015988 TTTTTCTACAGTAGTTCCTGAAAATATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTGAAAG
1 TTTTTCTACAGTAGTTTCTGAAAA-ATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTAAAAA
** * * *
7016053 ACGCTTCAAGCAAAATGCACTATCAGCAAAATCACTAAAAAAAGCTCTCACGTGGACACTC
65 ACGCTTCAAGCAGGATGCACTGTCAGCAAAAT-ACT-AAAAAAGCTCCCACGTGGACGCTC
* * * *
7016114 TTTTTCTACAGTAGTTTCTAAAAAAATAATTTTGAGAAAATGGTTCTAAAAAAATAGTATAAAAA
1 TTTTTCTACAGTAGTTTCT-GAAAAATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTAAAAA
* *
7016179 ACACTTCAAGCAGGATGCACTGTCAGCAAAATTACT---GAA---CCCACGTGGACGCTC
65 ACGCTTCAAGCAGGATGCACTGTCAGCAAAA-TACTAAAAAAGCTCCCACGTGGACGCTC
*
7016233 TTTTTCTATAGTAGTT
1 TTTTTCTACAGTAGTT
7016249 ACTGCTTGGC
Statistics
Matches: 225, Mismatches: 32, Indels: 15
0.83 0.12 0.06
Matches are distributed among these distances:
119 28 0.12
122 2 0.01
125 1 0.00
126 188 0.84
127 6 0.03
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (123 bp):
TTTTTCTACAGTAGTTTCTGAAAAATAATTTTGAGAAGACGGTTCTAAAAAAATAGTGTAAAAAA
CGCTTCAAGCAGGATGCACTGTCAGCAAAATACTAAAAAAGCTCCCACGTGGACGCTC
Found at i:7028862 original size:40 final size:40
Alignment explanation
Indices: 7028743--7028875 Score: 105
Period size: 40 Copynumber: 3.4 Consensus size: 40
7028733 CTTCGAGTCA
* * * *
7028743 ATGAGACACTGGGTTTCAATTTACTACTTTGGATTAATTCG
1 ATGAGACACTAGGTGTCAATTTATTACTTT-GATTAATCCG
* * * * *
7028784 AGGAGGCACTAGGTGCCAA--T-TTACTTCGGTTCAA-CCG
1 ATGAGACACTAGGTGTCAATTTATTACTTTGATT-AATCCG
7028821 ATGAGACACTAGGTGTCAATTTATTACTTTGAATT-ATCCG
1 ATGAGACACTAGGTGTCAATTTATTACTTTG-ATTAATCCG
* *
7028861 ATGAGGCACTGGGTG
1 ATGAGACACTAGGTG
7028876 CCAAACTGGT
Statistics
Matches: 70, Mismatches: 16, Indels: 13
0.71 0.16 0.13
Matches are distributed among these distances:
37 21 0.30
38 7 0.10
39 3 0.04
40 23 0.33
41 16 0.23
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (40 bp):
ATGAGACACTAGGTGTCAATTTATTACTTTGATTAATCCG
Found at i:7045469 original size:50 final size:51
Alignment explanation
Indices: 7045408--7045533 Score: 227
Period size: 51 Copynumber: 2.5 Consensus size: 51
7045398 ATCAATGACA
7045408 AGTGACAAGTGATAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATC
1 AGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
7045458 AGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
1 AGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
* *
7045509 AGTGACAAGAGATAAATGATAAGTG
1 AGTGACAAGTGATAAGTGATAAGTG
7045534 ATTCCGTGTA
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
50 30 0.41
51 43 0.59
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
Found at i:7049571 original size:49 final size:49
Alignment explanation
Indices: 7049451--7049637 Score: 213
Period size: 49 Copynumber: 3.8 Consensus size: 49
7049441 GATAATAACA
* ** *
7049451 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGATGTTCTCGTGAT-GG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGA-CCTCTCGT-CTCGG
* * * *
7049501 TGCCCATC-CCATGTCCCAGACATGGTCTTATAGGGACCTCTCATCTCGG
1 TG-CCAACGCCATGTCCCAGACATGGTCTTACATGGACCTCTCGTCTCGG
7049550 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGACCTCTCGTCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGACCTCTCGTCTCGG
* *
7049599 TGCC-ATG-CATGTCCCAGACATGGT-TCTACATGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCT-TACATGGACCTCT
7049638 TTACCCAAAT
Statistics
Matches: 119, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
46 1 0.01
47 29 0.24
48 7 0.06
49 51 0.43
50 28 0.24
51 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.27
Consensus pattern (49 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGACCTCTCGTCTCGG
Found at i:7057027 original size:50 final size:50
Alignment explanation
Indices: 7056903--7057151 Score: 277
Period size: 50 Copynumber: 4.8 Consensus size: 50
7056893 GATAATAACA
* * ** * *
7056903 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7056954 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7057004 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
*
7057054 TGCGC-ATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGC-CAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
7057109 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7057152 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 19, Indels: 13
0.84 0.09 0.06
Matches are distributed among these distances:
49 1 0.01
50 91 0.54
51 34 0.20
53 2 0.01
54 1 0.01
55 3 0.02
56 38 0.22
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7057082 original size:100 final size:104
Alignment explanation
Indices: 7056902--7057151 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
7056892 TGATAATAAC
**
7056902 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7056967 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* * *
7057004 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCGCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7057067 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
7057109 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7057152 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:7060134 original size:81 final size:81
Alignment explanation
Indices: 7059995--7060158 Score: 249
Period size: 81 Copynumber: 2.0 Consensus size: 81
7059985 TTCCTCTTTT
* * *
7059995 GTATCCAAGCTAGCTTATTTGAGTAATAGAGATACTTTCACATTCTCTCAACTTTTGCATTATTC
1 GTATCCAAGCTAGCTTATTTGAGTAATAGAGACACTTTCACATTCTCCCAACTCTTGCATTATTC
* * *
7060060 TTTTGTTCTAATCTAA
66 TCTTATGCTAATCTAA
*
7060076 GTATCCAAGCTAGCTTATTTGAGTAATAGAGACA-TTTCCACATTCTCCCAACTCTTGCATTCTT
1 GTATCCAAGCTAGCTTATTTGAGTAATAGAGACACTTT-CACATTCTCCCAACTCTTGCATTATT
7060140 CTCTTATGCTAATCTAA
65 CTCTTATGCTAATCTAA
7060157 GT
1 GT
7060159 TCCCTTTTCC
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
80 3 0.04
81 72 0.96
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40
Consensus pattern (81 bp):
GTATCCAAGCTAGCTTATTTGAGTAATAGAGACACTTTCACATTCTCCCAACTCTTGCATTATTC
TCTTATGCTAATCTAA
Found at i:7065495 original size:14 final size:14
Alignment explanation
Indices: 7065476--7065520 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
7065466 TTAAATTTTT
7065476 TAATATTTATATTA
1 TAATATTTATATTA
7065490 TAATATTATATATT-
1 TAATATT-TATATTA
7065504 T-A-ATTT-TATTA
1 TAATATTTATATTA
7065515 TAATAT
1 TAATAT
7065521 ATAAACAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.15
11 2 0.07
12 4 0.15
13 3 0.11
14 8 0.30
15 6 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TAATATTTATATTA
Found at i:7065521 original size:22 final size:21
Alignment explanation
Indices: 7065478--7065523 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
7065468 AAATTTTTTA
*
7065478 ATATTTATATTATAATATTAT
1 ATATTTATATTATAATAATAT
* *
7065499 ATATTTAATTTTATTATAATAT
1 ATATTT-ATATTATAATAATAT
7065521 ATA
1 ATA
7065524 AACAAGAAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATTTATATTATAATAATAT
Found at i:7068567 original size:153 final size:153
Alignment explanation
Indices: 7068286--7068573 Score: 504
Period size: 153 Copynumber: 1.9 Consensus size: 153
7068276 TTTTTAGATC
* * *
7068286 CCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACGAGGTTGGAGAAGAGT
1 CCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGCGAGAACAAGGTTGAAGAAGAGT
* *
7068351 TGTTCCAAAAGCAAGGATAGAAAAGATGATAATATCAAAAGTGAGATTCAGGCCCTTGCTAAACT
66 TGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCCCTTGCTAAACT
7068416 CAATCCAGGGCGTTCTTTGGATT
131 CAATCCAGGGCGTTCTTTGGATT
7068439 CCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGCGAGAACAAGGTTGAAGAAGAGT
1 CCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGCGAGAACAAGGTTGAAGAAGAGT
* * *
7068504 TGTTCTAAAAGCAAGGATAGAAAAGATGATAATGCCAAAAGTGAGATCCAGGCCCTTGTTAAACT
66 TGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCCCTTGCTAAACT
7068569 CAATC
131 CAATC
7068574 TAAAGCTCCT
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
153 127 1.00
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (153 bp):
CCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGCGAGAACAAGGTTGAAGAAGAGT
TGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCCCTTGCTAAACT
CAATCCAGGGCGTTCTTTGGATT
Found at i:7076206 original size:3 final size:3
Alignment explanation
Indices: 7076193--7076229 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
7076183 AAATTAACTG
7076193 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7076230 CAAGATTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:7091807 original size:39 final size:43
Alignment explanation
Indices: 7091719--7091813 Score: 117
Period size: 45 Copynumber: 2.3 Consensus size: 43
7091709 TTTGCATGTG
* * *
7091719 TATTTGAAATTATTATTTGAAATATTTCTCATATAAACATAATGA
1 TATTTGAAATAATTAATTGAAATATTTCACATAT-AACATAA-GA
7091764 TATTTGAAATAATTAATTGAAATATTTCACATAT-A-A-AA-A
1 TATTTGAAATAATTAATTGAAATATTTCACATATAACATAAGA
7091803 TATTTGAAATA
1 TATTTGAAATA
7091814 TCATACCTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
39 12 0.26
41 2 0.04
42 1 0.02
43 1 0.02
45 31 0.66
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.42
Consensus pattern (43 bp):
TATTTGAAATAATTAATTGAAATATTTCACATATAACATAAGA
Found at i:7098373 original size:15 final size:15
Alignment explanation
Indices: 7098353--7098389 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
7098343 ACACACGGTC
*
7098353 GTGTCACCTGGCCGT
1 GTGTCACCTGGCCAT
*
7098368 GTGTCATCTGGCCAT
1 GTGTCACCTGGCCAT
7098383 GTGTCAC
1 GTGTCAC
7098390 ACACGGCTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.11, C:0.30, G:0.30, T:0.30
Consensus pattern (15 bp):
GTGTCACCTGGCCAT
Found at i:7100774 original size:19 final size:18
Alignment explanation
Indices: 7100752--7100792 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
7100742 GCTTATTATG
7100752 TTAATTAAGTTAGATTAA
1 TTAATTAAGTTAGATTAA
* *
7100770 CTTAATTAATTTAGGTTAA
1 -TTAATTAAGTTAGATTAA
7100789 TTAA
1 TTAA
7100793 AGATTATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.46
Consensus pattern (18 bp):
TTAATTAAGTTAGATTAA
Found at i:7102397 original size:29 final size:28
Alignment explanation
Indices: 7102356--7102422 Score: 98
Period size: 29 Copynumber: 2.4 Consensus size: 28
7102346 TATAATATAT
* *
7102356 ATAAATTAAAATATTTAAATAAATTTAA
1 ATAAATTAAAATATTGAAATAAATTGAA
*
7102384 ATAAATTAACAATATTGAAATAAGTTGAA
1 ATAAATTAA-AATATTGAAATAAATTGAA
7102413 ATAAATTAAA
1 ATAAATTAAA
7102423 GATGTTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 10 0.29
29 25 0.71
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (28 bp):
ATAAATTAAAATATTGAAATAAATTGAA
Found at i:7102433 original size:29 final size:28
Alignment explanation
Indices: 7102356--7102434 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 28
7102346 TATAATATAT
* *
7102356 ATAAATTAAAATATTTAAATAAATTTAA
1 ATAAATTAAAATATTAAAATAAATTGAA
* *
7102384 ATAAATTAACAATATTGAAATAAGTTGAA
1 ATAAATTAA-AATATTAAAATAAATTGAA
*
7102413 ATAAATTAAAGATGTTAAAATA
1 ATAAATTAAA-ATATTAAAATA
7102435 TTTGAAAGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 10 0.23
29 34 0.77
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.34
Consensus pattern (28 bp):
ATAAATTAAAATATTAAAATAAATTGAA
Found at i:7102493 original size:4 final size:4
Alignment explanation
Indices: 7102484--7102510 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7102474 AACAATAGAT
7102484 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
7102511 AATGAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:7102742 original size:16 final size:16
Alignment explanation
Indices: 7102723--7102761 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
7102713 AGCTTAAAAC
7102723 AAAATACATATAT-AAT
1 AAAATA-ATATATAAAT
*
7102739 AAAATAATGTATAAAT
1 AAAATAATATATAAAT
7102755 AAAATAA
1 AAAATAA
7102762 GTAAATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (16 bp):
AAAATAATATATAAAT
Found at i:7107291 original size:31 final size:31
Alignment explanation
Indices: 7107224--7107304 Score: 99
Period size: 31 Copynumber: 2.5 Consensus size: 31
7107214 TTTAGGTCAT
* * * *
7107224 GACTAAAATTTTAAAAATTTGAAAAGTATAAG
1 GACTAAAA-TTGAAAAATTTAAAAAGTACAAA
*
7107256 GACTAAAATTGAAAATTTTAAAAAGTACAAA
1 GACTAAAATTGAAAAATTTAAAAAGTACAAA
7107287 GACTAAAATTGAACAAAT
1 GACTAAAATTGAA-AAAT
7107305 AAAAGAACAG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 31 0.74
32 11 0.26
ACGTcount: A:0.56, C:0.06, G:0.11, T:0.27
Consensus pattern (31 bp):
GACTAAAATTGAAAAATTTAAAAAGTACAAA
Found at i:7118823 original size:13 final size:14
Alignment explanation
Indices: 7118804--7118837 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
7118794 TAAAAAATTA
7118804 AAATTTAATTT-TT
1 AAATTTAATTTATT
*
7118817 TAATTTAATTTATT
1 AAATTTAATTTATT
7118831 AAATTTA
1 AAATTTA
7118838 GTAGGAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AAATTTAATTTATT
Found at i:7134157 original size:24 final size:24
Alignment explanation
Indices: 7134107--7134171 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
7134097 AGAAATTAAA
** * *
7134107 TTATAATTTTTAATAGTTTATATTT
1 TTATAATTTTTAA-AAATTAAAATT
7134132 TTATAATTTTTAAAAATTAAAATT
1 TTATAATTTTTAAAAATTAAAATT
*
7134156 TTAAAATTTTTAAAAA
1 TTATAATTTTTAAAAA
7134172 ATTTAGATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 22 0.63
25 13 0.37
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
TTATAATTTTTAAAAATTAAAATT
Found at i:7136955 original size:15 final size:16
Alignment explanation
Indices: 7136925--7136957 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7136915 AAGCTGTGTA
*
7136925 AACACAAACGCAACAC
1 AACACAAACACAACAC
7136941 AACAC-AACACAACAC
1 AACACAAACACAACAC
7136956 AA
1 AA
7136958 ATGTGTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.61, C:0.36, G:0.03, T:0.00
Consensus pattern (16 bp):
AACACAAACACAACAC
Found at i:7138175 original size:4 final size:4
Alignment explanation
Indices: 7138166--7138190 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7138156 TTATGAATCC
7138166 TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA T
7138191 GAGTATATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:7138666 original size:27 final size:27
Alignment explanation
Indices: 7138636--7138688 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7138626 CATCTGAATA
* *
7138636 TTACATTCTAACTAAATGAACCAAATC
1 TTACATTCCAACCAAATGAACCAAATC
*
7138663 TTACATTCCAACCAAATGAATCAAAT
1 TTACATTCCAACCAAATGAACCAAAT
7138689 AAGATAATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.45, C:0.23, G:0.04, T:0.28
Consensus pattern (27 bp):
TTACATTCCAACCAAATGAACCAAATC
Found at i:7146194 original size:17 final size:18
Alignment explanation
Indices: 7146155--7146196 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
7146145 AATATTTATG
7146155 GATAAAAATTTATAAAAT
1 GATAAAAATTTATAAAAT
* * *
7146173 AATAAAAATTT-TATATT
1 GATAAAAATTTATAAAAT
7146190 GATAAAA
1 GATAAAA
7146197 TAGATATTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (18 bp):
GATAAAAATTTATAAAAT
Found at i:7147231 original size:44 final size:44
Alignment explanation
Indices: 7147164--7147278 Score: 124
Period size: 44 Copynumber: 2.6 Consensus size: 44
7147154 TTAACCCGAC
* * * * *
7147164 CTATTGCAACTTCAGAGG-TATAGGATTCATCGCTTTAATCTACT
1 CTATTGCAACTTTAG-GGAGATAGGATTAATAGCTTCAATCTACT
*
7147208 CTATTGCAACTTTAGGGAGATAGGATTAATAGCTTCAATCTGCT
1 CTATTGCAACTTTAGGGAGATAGGATTAATAGCTTCAATCTACT
* * * *
7147252 CCACTACAACTTTAGGGAGATAAGATT
1 CTATTGCAACTTTAGGGAGATAGGATT
7147279 GGTTATTTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 2 0.03
44 58 0.97
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (44 bp):
CTATTGCAACTTTAGGGAGATAGGATTAATAGCTTCAATCTACT
Found at i:7147481 original size:50 final size:50
Alignment explanation
Indices: 7147399--7147781 Score: 356
Period size: 50 Copynumber: 7.7 Consensus size: 50
7147389 CTGTTCGCCA
* *
7147399 GGGAAGTAAGATTCGCTGTTGTAGATTCAATCTATTTAACTGCAATATCG
1 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * * ** * ** * *
7147449 GGGAAGCAAGATTCGCTATTGTAGCTTAAATCTGTTCCACTACACCGCCA
1 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
*
7147499 AGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
1 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
** * ** * * **** *
7147549 ATGAAGCAAGATTCGCCATTGTAGCTTCAATCTGTTTCACTGCACCACCA
1 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
** * * * *
7147599 GAAAAGTAAGATTCACTATTGTAGCTTCAATCTATTTAATTGTAATGTCG
1 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
* * * ** ** *
7147649 GGGAAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCACTGCACCG-CTA
1 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTC-G
*
7147699 GGGAAGTAAGATTCGCTGTTATAGCTTCAATCTATTTAACTGTC-ATGTCG
1 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTG-CAATGTCG
*
7147749 GGGAAGTAAGGTTCGCTGTTGTAGCTTCAATCT
1 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCT
7147782 GTTCCACTAC
Statistics
Matches: 256, Mismatches: 74, Indels: 6
0.76 0.22 0.02
Matches are distributed among these distances:
49 1 0.00
50 253 0.99
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
Found at i:7147800 original size:100 final size:100
Alignment explanation
Indices: 7147394--7147796 Score: 574
Period size: 100 Copynumber: 4.0 Consensus size: 100
7147384 TTGATCTGTT
* *
7147394 CGCCAGGGAAGTAAGATTCGCTGTTGTAGATTCAATCTATTTAACTGCAATATCGGGGAAGCAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAG
*
7147459 ATTCGCTATTGTAGCTTAAATCTGTTCCACTACAC
66 ATTCGCTATTGTAGCTTCAATCTGTTCCACTACAC
* **
7147494 CGCCAAGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGATGAAGCAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAG
* * *
7147559 ATTCGCCATTGTAGCTTCAATCTGTTTCACTGCAC
66 ATTCGCTATTGTAGCTTCAATCTGTTCCACTACAC
* ** * * * *
7147594 CACCAGAAAAGTAAGATTCACTATTGTAGCTTCAATCTATTTAATTGTAATGTCGGGGAAGCAAG
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAG
* * *
7147659 ATTCACTGTTGTAGCTTCAATCTGTTCCACTGCAC
66 ATTCGCTATTGTAGCTTCAATCTGTTCCACTACAC
* * *
7147694 CGCTAGGGAAGTAAGATTCGCTGTTATAGCTTCAATCTATTTAACTGTC-ATGTCGGGGAAGTAA
1 CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTG-CAATGTCGGGGAAGCAA
* *
7147758 GGTTCGCTGTTGTAGCTTCAATCTGTTCCACTACAC
65 GATTCGCTATTGTAGCTTCAATCTGTTCCACTACAC
7147794 CGC
1 CGC
7147797 TAGGAAGATA
Statistics
Matches: 266, Mismatches: 36, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
100 266 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (100 bp):
CGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAG
ATTCGCTATTGTAGCTTCAATCTGTTCCACTACAC
Found at i:7147851 original size:44 final size:47
Alignment explanation
Indices: 7147797--7147900 Score: 124
Period size: 47 Copynumber: 2.3 Consensus size: 47
7147787 ACTACACCGC
* * * *
7147797 TAGGAAGATAAG-GTTGG-TGG-CTTTAATCTGCTCTACTGCAACTT
1 TAGGGAGATAAGAGTTGGCCGGTCTTCAATCTACTCTACTGCAACTT
*
7147841 TAGGGAGATAAGATTTGGCCGGTCTTCAATCTACTCTACTGCAACTT
1 TAGGGAGATAAGAGTTGGCCGGTCTTCAATCTACTCTACTGCAACTT
* *
7147888 CAGAGAGATAAGA
1 TAGGGAGATAAGA
7147901 TTAGTTTATT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
44 11 0.22
45 4 0.08
46 2 0.04
47 33 0.66
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (47 bp):
TAGGGAGATAAGAGTTGGCCGGTCTTCAATCTACTCTACTGCAACTT
Found at i:7148108 original size:46 final size:45
Alignment explanation
Indices: 7148013--7148225 Score: 198
Period size: 46 Copynumber: 4.7 Consensus size: 45
7148003 TTCAATCTAT
** * * * * *
7148013 TCCACTGCAACTTCAGAAAAATAA-AATTCGCTATCTTTAGTCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTT-GTTATCTTCAGTCTGC
* *
7148058 TCCACTACAACTTCAGGGAGATAAGACTTGGTTATCTTCAGTATGC
1 TCCACTGCAACTTCAGGGAGATAAGACTT-GTTATCTTCAGTCTGC
* *
7148104 TCCACTGCAACTTCAGGGAGATAAGACTTGTTATAGTGTGA-TCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGTTAT-CT-TCAGTCTGC
* **
7148150 TCTACTGCAACTTCAAAGAGATAAGA-TCTGTTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACT-TGTTATCTTCAGTCTGC
* * * *
7148195 TCTACTGCAACCTCAGTGAGACAAGACTTGT
1 TCCACTGCAACTTCAGGGAGATAAGACTTGT
7148226 AGCTTCAACT
Statistics
Matches: 139, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
44 2 0.01
45 57 0.41
46 78 0.56
47 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTCTGC
Found at i:7148665 original size:72 final size:72
Alignment explanation
Indices: 7148520--7148656 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 72
7148510 GATTCGCTAC
* * * * * *
7148520 CTTTAGCTTTAATCTATTCTACTATAACGCCAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATC
1 CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTACCTTCAGCTTTAATC
7148585 CCCTCCA
66 CCCTCCA
* * *
7148592 CTTTAGCTTTAATCTATTCCACTACAATGCCAATGAAACAAGATTCGCTACCTTTAGCTTTAATC
1 CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTACCTTCAGCTTTAATC
7148657 TGTTCCACTG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 56 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (72 bp):
CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTACCTTCAGCTTTAATC
CCCTCCA
Found at i:7148852 original size:45 final size:45
Alignment explanation
Indices: 7148782--7149232 Score: 532
Period size: 45 Copynumber: 10.1 Consensus size: 45
7148772 GACTAGTGTT
* * * * *
7148782 TTCGACCTGCTTCACTGCCAGTACAGGAAGACAAGATCTGCTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
*
7148827 TTCGATCTACTTTGCTGCCAATACAGGAAGACAAGACCTGCTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
*
7148872 TTCGATCTACTTCGCTGCCAATATAGGAAGACAAGACCTGCTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
*
7148917 TTCGATCTACTTCGTTGCCAATACAGGAAGACAAGACCTGCTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
* * *
7148962 -TCTGATATACATT-GCTGCCAATACAGGAAGACAATACCTGATATC
1 TTC-GATCTAC-TTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
* * * * *
7149007 TTTGATCTACTTCGCTACCAATACAGGAAGACAAAACTTGCTATT
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
* * * *
7149052 TTCGATCTACTCCGCTGCCAATATAGGAAGACAAGACATGCTATA
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
* * *
7149097 TTCGATCTACTACGTTGCCAATACAGGAAGACAAGATCTGCTATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
* * * * *** * * * *
7149142 CTCGACCTACTCCACTGCTGCT-CAGGGAGACGAGGCTTG-TATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
* *
7149185 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCAATC
1 TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
7149230 TTC
1 TTC
7149233 TTCAATCCAT
Statistics
Matches: 340, Mismatches: 60, Indels: 12
0.83 0.15 0.03
Matches are distributed among these distances:
43 19 0.06
44 28 0.08
45 290 0.85
46 3 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (45 bp):
TTCGATCTACTTCGCTGCCAATACAGGAAGACAAGACCTGCTATC
Found at i:7149567 original size:24 final size:24
Alignment explanation
Indices: 7149535--7149586 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7149525 CCGGATTGCC
* *
7149535 CCACTATAATCTTCAAGGTTCAAT
1 CCACCATAACCTTCAAGGTTCAAT
*
7149559 CCACCATAACCTTTAAGGTTCAAT
1 CCACCATAACCTTCAAGGTTCAAT
7149583 CCAC
1 CCAC
7149587 TGCACCTTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.31, G:0.08, T:0.29
Consensus pattern (24 bp):
CCACCATAACCTTCAAGGTTCAAT
Found at i:7149696 original size:45 final size:46
Alignment explanation
Indices: 7149615--7149703 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 46
7149605 AATTTGAACC
* *
7149615 ATCCTCCTCCTACTGTAATTTAGGAGTATAAGATCTGATTCTCTCA
1 ATCCTCCTCCTACTGTAATTTAGGAGTACAAGATCTGAATCTCTCA
**
7149661 ATCCT-CTCCTACTGTAATTTAAGGA-TACATTATCTGAATCTCT
1 ATCCTCCTCCTACTGTAATTT-AGGAGTACAAGATCTGAATCTCT
7149704 TTGGCCTTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 29 0.76
46 9 0.24
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (46 bp):
ATCCTCCTCCTACTGTAATTTAGGAGTACAAGATCTGAATCTCTCA
Found at i:7152673 original size:50 final size:50
Alignment explanation
Indices: 7152552--7152794 Score: 324
Period size: 50 Copynumber: 4.8 Consensus size: 50
7152542 GATCATAACA
* * ** *
7152552 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCT-CTCATCTCGG
* * *
7152603 TGCCCATGCCATGTCGCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7152653 TGCCAACGCCATGTCCCAGACATGGTCTTATACGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
7152703 TGCCCATGCCATGTCCCAGACATGGTCTTAGAGGGGACCTATCATCTCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
7152753 TGCCAATGCCATGTTCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7152795 TTACCCAAAT
Statistics
Matches: 167, Mismatches: 25, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
50 134 0.80
51 33 0.20
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7152726 original size:100 final size:100
Alignment explanation
Indices: 7152551--7152794 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 100
7152541 TGATCATAAC
** *
7152551 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGGTGCCCATGCCATG
* *
7152616 TCGCAGACATGGTCTTACG-GGGGACCTCTCATCTCG
65 TCCCAGACATGGTCTTA-GAGGGGACCTATCATCTCG
* * * *
7152652 GTGCCAACGCCATGTCCCAGACATGGTCTTATACGGGACCTCTCATCTCGGTGCCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGT
7152717 CCCAGACATGGTCTTAGAGGGGACCTATCATCTCG
66 CCCAGACATGGTCTTAGAGGGGACCTATCATCTCG
* *
7152752 ATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGACCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7152795 TTACCCAAAT
Statistics
Matches: 128, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
99 1 0.01
100 92 0.72
101 35 0.27
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.25
Consensus pattern (100 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGT
CCCAGACATGGTCTTAGAGGGGACCTATCATCTCG
Found at i:7152910 original size:13 final size:13
Alignment explanation
Indices: 7152889--7152918 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7152879 GCTTGGGTCA
7152889 TCATCAAATAAAT
1 TCATCAAATAAAT
*
7152902 TCATGAAATAAAT
1 TCATCAAATAAAT
7152915 TCAT
1 TCAT
7152919 AGTTTCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:7158004 original size:3 final size:3
Alignment explanation
Indices: 7157998--7158022 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7157988 AAAGGGTAAC
7157998 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
7158023 AAGTAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7159782 original size:12 final size:12
Alignment explanation
Indices: 7159765--7159797 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7159755 CGGCCCTCCA
7159765 ATATTAATTTTT
1 ATATTAATTTTT
7159777 ATATT-ATTTTT
1 ATATTAATTTTT
7159788 ATA-TAATTTT
1 ATATTAATTTT
7159798 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:7159989 original size:22 final size:22
Alignment explanation
Indices: 7159964--7160006 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7159954 TATCCAAATA
7159964 ATAATAACAAAATAGTAACAAC
1 ATAATAACAAAATAGTAACAAC
** *
7159986 ATAATAGTAAAATGGTAACAA
1 ATAATAACAAAATAGTAACAA
7160007 AATAGGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAACAAC
Found at i:7163230 original size:29 final size:29
Alignment explanation
Indices: 7163161--7163230 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
7163151 CTTGAATTTA
7163161 AAATTTAAAAAATAAATGAACTAAATTCTT
1 AAATTT-AAAAATAAATGAACTAAATTCTT
** * *
7163191 AAAAATAAAAATATATGAATTAAATTC-T
1 AAATTTAAAAATAAATGAACTAAATTCTT
7163219 AAATTTATAAAA
1 AAATTTA-AAAA
7163231 AGTATAATGA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
28 6 0.18
29 23 0.70
30 4 0.12
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (29 bp):
AAATTTAAAAATAAATGAACTAAATTCTT
Found at i:7164974 original size:31 final size:31
Alignment explanation
Indices: 7164937--7164997 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
7164927 ATGTAATCAC
*
7164937 TGAACTACTT-AAAAGTTTTCATTTAAGTCAT
1 TGAACTA-TTCAAAACTTTTCATTTAAGTCAT
*
7164968 TGAACTATTCAAAACTTTTTATTTAAGTCA
1 TGAACTATTCAAAACTTTTCATTTAAGTCA
7164998 CTAAGTTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.43
Consensus pattern (31 bp):
TGAACTATTCAAAACTTTTCATTTAAGTCAT
Found at i:7168072 original size:20 final size:22
Alignment explanation
Indices: 7168047--7168089 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7168037 TTATCAGAAC
7168047 TATTAA-ATA-TAATTCAAATA
1 TATTAACATATTAATTCAAATA
*
7168067 TATTAACTTATTAATTCAAATA
1 TATTAACATATTAATTCAAATA
7168089 T
1 T
7168090 TATAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 6 0.30
21 2 0.10
22 12 0.60
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (22 bp):
TATTAACATATTAATTCAAATA
Found at i:7169808 original size:28 final size:30
Alignment explanation
Indices: 7169777--7169837 Score: 83
Period size: 28 Copynumber: 2.1 Consensus size: 30
7169767 TTAATTAAAA
7169777 TTTAAAATTT-TTTATA-AATATTTTG-AAT
1 TTTAAAATTTATTT-TAGAATATTTTGTAAT
*
7169805 TTTAAAATTTATTTTAGATTATTTTGTAAT
1 TTTAAAATTTATTTTAGAATATTTTGTAAT
7169835 TTT
1 TTT
7169838 TATTGAAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 12 0.41
29 11 0.38
30 6 0.21
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (30 bp):
TTTAAAATTTATTTTAGAATATTTTGTAAT
Found at i:7173279 original size:102 final size:99
Alignment explanation
Indices: 7173058--7173269 Score: 318
Period size: 98 Copynumber: 2.1 Consensus size: 99
7173048 AAAAAAAAAG
* * *
7173058 AAAAAGGAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAA
1 AAAAAGTAAAAAAAA--ATTGGGTGCTGGCCTGTAAATGGCCGGCACCCAGTACAATTT---AAA
7173123 ATATTTTTTTTCGTGTCAGAATCAGATATCAGTATACGA
61 ATATTTTTTTTCGTGTCAGAATCAGATATCAGTATACGA
* * *
7173162 AAAAAGTAAAAAAAAATTGGGTTCTGGCCTGTAAATGGTCGGCACCCAGTACAATTT-AAATTTT
1 AAAAAGTAAAAAAAAATTGGGTGCTGGCCTGTAAATGGCCGGCACCCAGTACAATTTAAAATATT
7173226 TTTTTTCGTGTCAGAATCAGATATCAGTATACGA
66 TTTTTTCGTGTCAGAATCAGATATCAGTATACGA
7173260 AAAAAGTAAA
1 AAAAAGTAAA
7173270 CCAAAAAAAA
Statistics
Matches: 102, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
98 50 0.49
102 38 0.37
104 14 0.14
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (99 bp):
AAAAAGTAAAAAAAAATTGGGTGCTGGCCTGTAAATGGCCGGCACCCAGTACAATTTAAAATATT
TTTTTTCGTGTCAGAATCAGATATCAGTATACGA
Found at i:7174825 original size:4 final size:4
Alignment explanation
Indices: 7174816--7174844 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7174806 TAAGCATAAA
7174816 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
7174845 TCAACTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:7174930 original size:14 final size:13
Alignment explanation
Indices: 7174913--7174947 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
7174903 TTAAAATTTG
*
7174913 TTTTTATATAAAAA
1 TTTTAATAT-AAAA
7174927 TTTTAATATAAAA
1 TTTTAATATAAAA
7174940 TTTTAATA
1 TTTTAATA
7174948 CTGTCAGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
TTTTAATATAAAA
Found at i:7187879 original size:52 final size:51
Alignment explanation
Indices: 7187808--7188015 Score: 282
Period size: 52 Copynumber: 4.1 Consensus size: 51
7187798 ATCAAGTGAT
* * *
7187808 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGT-G
* *
7187860 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* *
7187911 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
*
7187957 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-AAGTG
7188009 ATAAGTG
1 A-AAGTG
7188016 GCTACACTTA
Statistics
Matches: 141, Mismatches: 8, Indels: 13
0.87 0.05 0.08
Matches are distributed among these distances:
46 43 0.30
51 45 0.32
52 48 0.34
53 5 0.04
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
Found at i:7187984 original size:97 final size:99
Alignment explanation
Indices: 7187808--7188015 Score: 276
Period size: 97 Copynumber: 2.1 Consensus size: 99
7187798 ATCAAGTGAT
* * *
7187808 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----GAAAGTGATAAGTG
* *
7187873 ATAGCTTCGGCTACACTTATCTGATCAAGTGAC-AAGTG
61 ATAGCTTCAGCTACACTTATCTGATCAAGAGACAAAGTG
* *
7187911 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-AAAGTGATAAGTGATAGC
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAAGTGATAGC
*
7187975 TTTAGCTACACTTATCTGATCAAGAGACAAAGTG
66 TTCAGCTACACTTATCTGATCAAGAGACAAAGTG
7188009 ATAAGTG
1 A-AAGTG
7188016 GCTACACTTA
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
97 43 0.45
98 6 0.06
99 5 0.05
103 41 0.43
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (99 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAAGTGATAGC
TTCAGCTACACTTATCTGATCAAGAGACAAAGTG
Found at i:7187988 original size:46 final size:46
Alignment explanation
Indices: 7187860--7188052 Score: 233
Period size: 46 Copynumber: 4.3 Consensus size: 46
7187850 TGACAAGTGG
*
7187860 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
*
7187906 AAGTGAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 -----AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
**
7187957 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
*
7188003 AAAGTG---A-T-A-AG--T-GGCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
7188040 AAAGTGATAAGTG
1 AAAGTGATAAGTG
7188053 GCTACACTTA
Statistics
Matches: 130, Mismatches: 7, Indels: 19
0.83 0.04 0.12
Matches are distributed among these distances:
37 29 0.22
38 1 0.01
40 3 0.02
41 2 0.02
42 1 0.01
43 1 0.01
46 49 0.38
51 44 0.34
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGAGAC
Found at i:7188023 original size:37 final size:37
Alignment explanation
Indices: 7187979--7188124 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
7187969 GATAGCTTTA
*
7187979 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7188016 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
7188053 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
7188090 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7188125 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:7189440 original size:49 final size:49
Alignment explanation
Indices: 7189379--7189571 Score: 323
Period size: 49 Copynumber: 3.9 Consensus size: 49
7189369 ATGTGAACAT
7189379 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
7189429 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
7189478 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
7189527 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
7189572 AGAAAACGAA
Statistics
Matches: 137, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 133 0.97
50 4 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:7192781 original size:52 final size:52
Alignment explanation
Indices: 7192710--7192959 Score: 359
Period size: 52 Copynumber: 4.9 Consensus size: 52
7192700 ATCAAGTGAT
* * *
7192710 AAAGTGATAAGTGGTAGCTTTAGCTACATTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
*
7192762 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
* *
7192814 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
* * *
7192866 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC------
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
* *
7192912 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAA
7192960 AGTGATAAGT
Statistics
Matches: 184, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
46 43 0.23
52 141 0.77
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:7192960 original size:46 final size:44
Alignment explanation
Indices: 7192866--7193081 Score: 199
Period size: 37 Copynumber: 5.3 Consensus size: 44
7192856 TGACAAGTGA
*
7192866 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTT--GCTACACTTATCTGATCAAGAGAC
7192912 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGC-TT-GCTACACTTATCTGATCAAGAGAC
*
7192958 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
*
7192995 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
*
7193032 AAAGTGAT-AG-G-T-G---GCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
7193068 -AAGTGATAAGTGAT
1 AAAGTGATAAGTGAT
7193082 CATACGTAAG
Statistics
Matches: 160, Mismatches: 5, Indels: 18
0.87 0.03 0.10
Matches are distributed among these distances:
35 7 0.04
36 7 0.04
37 89 0.56
38 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 51 0.32
47 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (44 bp):
AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
Found at i:7192978 original size:37 final size:37
Alignment explanation
Indices: 7192934--7193079 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
7192924 GATAGCTTTA
*
7192934 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7192971 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
7193008 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
7193045 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7193080 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:7199040 original size:4 final size:4
Alignment explanation
Indices: 7199031--7199065 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
7199021 GCCTACGATA
7199031 TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
7199066 AGGAGTATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:7202383 original size:3 final size:3
Alignment explanation
Indices: 7202375--7202421 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
7202365 TTTAGCAATT
*
7202375 TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7202422 GTTTTTATGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7202522 original size:25 final size:26
Alignment explanation
Indices: 7202481--7202530 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
7202471 ATTTTTATAT
*
7202481 ACATATCTATCTATATATATAATTAA
1 ACATATATATCTATATATATAATTAA
*
7202507 ACATATATAT-TATATATATTATTA
1 ACATATATATCTATATATATAATTA
7202531 TTTCATATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (26 bp):
ACATATATATCTATATATATAATTAA
Found at i:7202738 original size:22 final size:22
Alignment explanation
Indices: 7202681--7202738 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 22
7202671 ATATATGTAC
*
7202681 ATATTTTAACCTTTGTAAATACAT
1 ATATTTTAA--TTTATAAATACAT
* *
7202705 ATA-TATATATTTATATATACAT
1 ATATTTTA-ATTTATAAATACAT
7202727 ATATTTTAATTT
1 ATATTTTAATTT
7202739 TTGCCTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
22 18 0.64
23 6 0.21
24 4 0.14
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.52
Consensus pattern (22 bp):
ATATTTTAATTTATAAATACAT
Found at i:7214736 original size:18 final size:17
Alignment explanation
Indices: 7214703--7214741 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7214693 TTGTATAAAT
7214703 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7214721 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7214738 TGTG
1 TGTG
7214742 GAAGGAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7214858 original size:8 final size:8
Alignment explanation
Indices: 7214845--7214873 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7214835 CACTAGAGAC
7214845 CAGTGTTA
1 CAGTGTTA
7214853 CAGTGTTA
1 CAGTGTTA
7214861 CAGTGTTA
1 CAGTGTTA
7214869 CAGTG
1 CAGTG
7214874 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:7214987 original size:23 final size:23
Alignment explanation
Indices: 7214960--7215035 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
7214950 AGTGTTATTG
7214960 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7214983 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7215006 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7215029 ATCAGTG
1 ATCAGTG
7215036 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7222055 original size:18 final size:17
Alignment explanation
Indices: 7222022--7222060 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7222012 TTGTATAAAT
7222022 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7222040 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7222057 TGTG
1 TGTG
7222061 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7222178 original size:8 final size:8
Alignment explanation
Indices: 7222165--7222193 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7222155 CACTAGAGAC
7222165 CAGTGTTA
1 CAGTGTTA
7222173 CAGTGTTA
1 CAGTGTTA
7222181 CAGTGTTA
1 CAGTGTTA
7222189 CAGTG
1 CAGTG
7222194 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:7222307 original size:23 final size:23
Alignment explanation
Indices: 7222280--7222355 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
7222270 AGTGTTATTG
7222280 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7222303 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7222326 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7222349 ATCAGTG
1 ATCAGTG
7222356 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7231609 original size:41 final size:38
Alignment explanation
Indices: 7231514--7231612 Score: 101
Period size: 41 Copynumber: 2.6 Consensus size: 38
7231504 AGCAATAAAG
7231514 TGACACCCAGTGTCTCATCG-ACCAAGCCGAAGTAAGT
1 TGACACCCAGTGTCTCATCGAACCAAGCCGAAGTAAGT
** ** * * *
7231551 TGGTACCCAGTACCTCATCGAATCTATCCGAAGTAACAGT
1 TGACACCCAGTGTCTCATCGAACCAAGCCGAAGT-A-AGT
7231591 ATGACACCCAGTGTCTCATCGA
1 -TGACACCCAGTGTCTCATCGA
7231613 CTCAAGGTCG
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 16 0.34
38 10 0.21
39 1 0.02
40 3 0.06
41 17 0.36
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (38 bp):
TGACACCCAGTGTCTCATCGAACCAAGCCGAAGTAAGT
Found at i:7231914 original size:27 final size:27
Alignment explanation
Indices: 7231883--7231936 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7231873 TCACACATAA
*
7231883 TCATA-ATTTAATTCACTTTTATTCAAT
1 TCATATATTTAATTCA-TTTAATTCAAT
*
7231910 TCATATTTTTAATTCATTTAATTCAAT
1 TCATATATTTAATTCATTTAATTCAAT
7231937 ATCGATATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (27 bp):
TCATATATTTAATTCATTTAATTCAAT
Found at i:7231921 original size:28 final size:29
Alignment explanation
Indices: 7231889--7231945 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
7231879 ATAATCATAA
*
7231889 TTTAATTCACTTTTATTCAAT-TC-ATATT
1 TTTAATTCA-TTTAATTCAATATCGATATT
7231917 TTTAATTCATTTAATTCAATATCGATATT
1 TTTAATTCATTTAATTCAATATCGATATT
7231946 CACCTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.38
28 11 0.42
29 5 0.19
ACGTcount: A:0.32, C:0.12, G:0.02, T:0.54
Consensus pattern (29 bp):
TTTAATTCATTTAATTCAATATCGATATT
Found at i:7232793 original size:5 final size:5
Alignment explanation
Indices: 7232768--7232880 Score: 80
Period size: 5 Copynumber: 22.8 Consensus size: 5
7232758 TTTCTTTTGT
*
7232768 TATATA TATATA TAAAA TATAA TATAA TAT-A T-TAA TAATAA TATAA
1 TATA-A TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA
*
7232814 TATAA TAT-A T-TAA TAATAA TATAA TATAA -A-AA CATAA TCATTAA
1 TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA TATAA T-A-TAA
*
7232858 T-TACG TAT-A TATAA TATAA TATA
1 TATA-A TATAA TATAA TATAA TATA
7232881 TATTTTAAAC
Statistics
Matches: 89, Mismatches: 5, Indels: 27
0.74 0.04 0.22
Matches are distributed among these distances:
3 4 0.04
4 15 0.17
5 47 0.53
6 19 0.21
7 4 0.04
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:7232799 original size:19 final size:19
Alignment explanation
Indices: 7232769--7232882 Score: 74
Period size: 19 Copynumber: 5.6 Consensus size: 19
7232759 TTCTTTTGTT
7232769 ATATATATATATAAAATATA
1 ATATA-ATATATAAAATATA
7232789 ATATAATATATTAATAATAATATA
1 ATAT-A-ATA-T-ATAA-AATATA
*
7232813 ATATAATATAT-TAATAATA
1 ATATAATATATAAAAT-ATA
*
7232832 ATATAATATA-AAAACATA
1 ATATAATATATAAAATATA
*
7232850 ATCATTAAT-TACGT-ATATATA
1 AT-A-TAATATA--TAAAATATA
7232871 ATATAATATATA
1 ATATAATATATA
7232883 TTTTAAACTA
Statistics
Matches: 76, Mismatches: 5, Indels: 27
0.70 0.05 0.25
Matches are distributed among these distances:
18 9 0.12
19 22 0.29
20 13 0.17
21 13 0.17
22 4 0.05
23 5 0.07
24 10 0.13
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (19 bp):
ATATAATATATAAAATATA
Found at i:7232851 original size:24 final size:24
Alignment explanation
Indices: 7232769--7232842 Score: 123
Period size: 24 Copynumber: 3.0 Consensus size: 24
7232759 TTCTTTTGTT
7232769 ATATATATATATAA-AATATAATATA
1 ATATAT-TA-ATAATAATATAATATA
7232794 ATATATTAATAATAATATAATATA
1 ATATATTAATAATAATATAATATA
7232818 ATATATTAATAATAATATAATATA
1 ATATATTAATAATAATATAATATA
7232842 A
1 A
7232843 AAACATAATC
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
23 4 0.08
24 38 0.79
25 6 0.12
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
ATATATTAATAATAATATAATATA
Found at i:7234146 original size:94 final size:94
Alignment explanation
Indices: 7234038--7234227 Score: 353
Period size: 94 Copynumber: 2.0 Consensus size: 94
7234028 CACCAGTTAA
*
7234038 AATATTGTGCACCAACTAGTACATTATTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
1 AATATTGTGAACCAACTAGTACATTATTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
*
7234103 TAAAATAAAAAATTAATAAATATTAAAAG
66 TAAAATAAAAAATTAATAAATAATAAAAG
*
7234132 AATATTGTGAACCAACTAGTACATTATTTAAAGTTTACCAACTTTAAACTTAATTTTATTTATTT
1 AATATTGTGAACCAACTAGTACATTATTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
7234197 TAAAATAAAAAATTAATAAATAATAAAAG
66 TAAAATAAAAAATTAATAAATAATAAAAG
7234226 AA
1 AA
7234228 GTGTTCGGTT
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.38
Consensus pattern (94 bp):
AATATTGTGAACCAACTAGTACATTATTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
TAAAATAAAAAATTAATAAATAATAAAAG
Found at i:7234333 original size:21 final size:20
Alignment explanation
Indices: 7234308--7234348 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
7234298 AACTTAATTT
7234308 TATATTT-TAAATTATATAAAA
1 TATATTTAT-AATT-TATAAAA
7234329 TATATTTATAATTTATAAAA
1 TATATTTATAATTTATAAAA
7234349 CAAATATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 11 0.58
22 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TATATTTATAATTTATAAAA
Found at i:7234355 original size:22 final size:21
Alignment explanation
Indices: 7234309--7234355 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
7234299 ACTTAATTTT
*
7234309 ATATTTTAAATTATATAAAAT
1 ATATTTTAAATTATATAAAAA
*
7234330 ATATTTATAATTTATA-AAACAA
1 ATATTT-TAAATTATATAAA-AA
7234352 ATAT
1 ATAT
7234356 AAATTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATTTTAAATTATATAAAAA
Found at i:7234866 original size:20 final size:21
Alignment explanation
Indices: 7234841--7234891 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
7234831 ATTAATTATT
*
7234841 TATAAAATT-TAATTTGAATA
1 TATAAAATTATAATTTAAATA
*
7234861 TAT-AAATTATATTTTAAATA
1 TATAAAATTATAATTTAAATA
7234881 T-TAAAA-TATAA
1 TATAAAATTATAA
7234892 CCAATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TATAAAATTATAATTTAAATA
Found at i:7241275 original size:29 final size:30
Alignment explanation
Indices: 7241224--7241281 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
7241214 GAGGTAACAA
7241224 ATTTTAATAATAGAGTGACTAAAACGTAAC
1 ATTTTAATAATAGAGTGACTAAAACGTAAC
* *
7241254 ATTTTAA-ACATA-AGTGATTAAAATGTAA
1 ATTTTAATA-ATAGAGTGACTAAAACGTAA
7241282 TCTAAGACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.48, C:0.07, G:0.12, T:0.33
Consensus pattern (30 bp):
ATTTTAATAATAGAGTGACTAAAACGTAAC
Found at i:7242654 original size:24 final size:25
Alignment explanation
Indices: 7242633--7242688 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
7242623 AATTATAAAC
7242633 ATATATACTATTAAAATGATAAAATT
1 ATAT-TACTATTAAAATGATAAAATT
*
7242659 ATATTTCTATTAAAATGATAAAATT
1 ATATTACTATTAAAATGATAAAATT
7242684 ATATT
1 ATATT
7242689 TTTATTTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (25 bp):
ATATTACTATTAAAATGATAAAATT
Found at i:7242668 original size:25 final size:25
Alignment explanation
Indices: 7242640--7242694 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
7242630 AACATATATA
7242640 CTATTAAAATGATAAAATTATATTT
1 CTATTAAAATGATAAAATTATATTT
7242665 CTATTAAAATGATAAAATTATATTT
1 CTATTAAAATGATAAAATTATATTT
*
7242690 TTATT
1 CTATT
7242695 TTCATAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (25 bp):
CTATTAAAATGATAAAATTATATTT
Found at i:7243763 original size:30 final size:30
Alignment explanation
Indices: 7243729--7243786 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
7243719 TGGTAGCTTA
7243729 AATAAAAACTTTTGAATAGTTTAATGACTT
1 AATAAAAACTTTTGAATAGTTTAATGACTT
*** *
7243759 AATAAATTTTTTTGAATAGTTTAGTGAC
1 AATAAAAACTTTTGAATAGTTTAATGAC
7243787 CATTTCTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (30 bp):
AATAAAAACTTTTGAATAGTTTAATGACTT
Found at i:7252562 original size:31 final size:30
Alignment explanation
Indices: 7252520--7252578 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
7252510 ACAAATTTAG
*
7252520 AATTTAGTCTTTATACTTTTG-TTTCAAGT
1 AATTTAGTCTTTATACTTTAGATTTCAAGT
*
7252549 AATTTAGTCTCTTTATTCTTTAGATTTCAA
1 AATTTAG--TCTTTATACTTTAGATTTCAA
7252579 AATTAAAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 7 0.28
31 12 0.48
32 6 0.24
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.54
Consensus pattern (30 bp):
AATTTAGTCTTTATACTTTAGATTTCAAGT
Found at i:7260032 original size:19 final size:19
Alignment explanation
Indices: 7259984--7260040 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
7259974 AAAAATATAT
*
7259984 AATATATATAAAAAGTAAA
1 AATATATATAAAAATTAAA
7260003 AATAGTATATAAAAATTGAAA
1 AATA-TATATAAAAATT-AAA
7260024 AATAT-TATAAAAATTAA
1 AATATATATAAAAATTAA
7260041 TATATATTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 2 0.06
19 14 0.40
20 12 0.34
21 7 0.20
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
AATATATATAAAAATTAAA
Found at i:7260107 original size:27 final size:28
Alignment explanation
Indices: 7260060--7260115 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
7260050 AAATTTCAAT
*
7260060 TTTTGTATATTTTTAATATTTATATATTA
1 TTTTGTATATTTTTAAAATTTATA-ATTA
7260089 TTTTG-AT-TTTTTAAAATTTATAATTA
1 TTTTGTATATTTTTAAAATTTATAATTA
7260115 T
1 T
7260116 ATGTTTTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 5 0.19
27 14 0.54
28 2 0.08
29 5 0.19
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (28 bp):
TTTTGTATATTTTTAAAATTTATAATTA
Found at i:7263035 original size:26 final size:26
Alignment explanation
Indices: 7263005--7263056 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
7262995 CTTAGTTTTA
*
7263005 GCCTTTGTTTTCTCTAGGTTTTCTCT
1 GCCTTAGTTTTCTCTAGGTTTTCTCT
7263031 GCCTTAGTTTTCTCTAGGTTTTCTCT
1 GCCTTAGTTTTCTCTAGGTTTTCTCT
7263057 TAGTCTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.06, C:0.23, G:0.15, T:0.56
Consensus pattern (26 bp):
GCCTTAGTTTTCTCTAGGTTTTCTCT
Found at i:7290398 original size:50 final size:52
Alignment explanation
Indices: 7290318--7290415 Score: 132
Period size: 50 Copynumber: 1.9 Consensus size: 52
7290308 CCCTGTCGCA
*
7290318 TATTATGCGAACCTTTACAATTGTGTGAGCT-TATG-TGTGTGCGAGCTCTG
1 TATTATGCGAACCTTTACAATTGTGCGAGCTCTATGTTGTGTGCGAGCTCTG
*
7290368 TATTATGCGAGCCTATATAC-A-TGTGCGAGCTCTATGTTGTGTGCGAGC
1 TATTATGCGAACCT-T-TACAATTGTGCGAGCTCTATGTTGTGTGCGAGC
7290416 CATATACTGA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
50 22 0.52
51 6 0.14
52 14 0.33
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (52 bp):
TATTATGCGAACCTTTACAATTGTGCGAGCTCTATGTTGTGTGCGAGCTCTG
Found at i:7292142 original size:28 final size:29
Alignment explanation
Indices: 7292088--7292165 Score: 88
Period size: 28 Copynumber: 2.7 Consensus size: 29
7292078 GGGTTTAGGG
*
7292088 GTTCTAAAAAAATAATTTTGACAAGAT-A
1 GTTCTGAAAAAATAATTTTGACAAGATGA
* * *
7292116 GGTTTTGAAAAAATAATTTT-TCGAGATGA
1 -GTTCTGAAAAAATAATTTTGACAAGATGA
*
7292145 GTTCTGAAGAAATAATTTTGA
1 GTTCTGAAAAAATAATTTTGA
7292166 AGAAAAAAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 22 0.55
29 18 0.45
ACGTcount: A:0.42, C:0.05, G:0.17, T:0.36
Consensus pattern (29 bp):
GTTCTGAAAAAATAATTTTGACAAGATGA
Found at i:7300310 original size:2 final size:2
Alignment explanation
Indices: 7300303--7300337 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7300293 GTCTTAGGCA
7300303 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
7300338 TATGAGTCCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7305463 original size:10 final size:10
Alignment explanation
Indices: 7305450--7305504 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
7305440 AAAATATAAA
7305450 AAAATTATAT
1 AAAATTATAT
*
7305460 AAAATTATGT
1 AAAATTATAT
7305470 AAAATT-TATT
1 AAAATTATA-T
*
7305480 AATAATTATAA
1 AA-AATTATAT
*
7305491 AAAATTATAG
1 AAAATTATAT
7305501 AAAA
1 AAAA
7305505 AATTATTTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 1 0.03
10 29 0.76
11 6 0.16
12 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (10 bp):
AAAATTATAT
Found at i:7305473 original size:21 final size:20
Alignment explanation
Indices: 7305448--7305504 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
7305438 AAAAAATATA
7305448 AAAAAATTATATAAAATTAT
1 AAAAAATTATATAAAATTAT
**
7305468 GTAAAATT-TATTAATAATTAT
1 AAAAAATTATA-TAA-AATTAT
*
7305489 AAAAAATTATAGAAAA
1 AAAAAATTATATAAAA
7305505 AATTATTTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
19 2 0.07
20 11 0.38
21 14 0.48
22 2 0.07
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (20 bp):
AAAAAATTATATAAAATTAT
Found at i:7305518 original size:51 final size:50
Alignment explanation
Indices: 7305431--7305528 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 50
7305421 ATTTTTTAGG
* *
7305431 TAATTGTAAAAAATATAAAAAAATTATATAAAATTATGTAAAATTTATTAA
1 TAATTATAAAAAATATAAAAAAATTATATAAAATTAT-AAAAATTTATTAA
**
7305482 TAATTATAAAAAATTATAGAAAAAATTAT-T-TGATTATAAAAATTTAT
1 TAATTATAAAAAA-TATA-AAAAAATTATATAAAATTATAAAAATTTAT
7305529 AGAAAAATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
50 9 0.22
51 17 0.41
52 5 0.12
53 10 0.24
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (50 bp):
TAATTATAAAAAATATAAAAAAATTATATAAAATTATAAAAATTTATTAA
Found at i:7305520 original size:30 final size:31
Alignment explanation
Indices: 7305452--7305535 Score: 100
Period size: 30 Copynumber: 2.7 Consensus size: 31
7305442 AATATAAAAA
* * *
7305452 AATTATATAAAATTAT-GTAAAATTTATTAAT
1 AATTATAAAAAATTATAGAAAAAATTATT-AT
7305483 AATTATAAAAAATTATAGAAAAAATTATT-T
1 AATTATAAAAAATTATAGAAAAAATTATTAT
* *
7305513 GATTATAAAAATTTATAGAAAAA
1 AATTATAAAAAATTATAGAAAAA
7305536 TGTTTTCGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
30 22 0.47
31 15 0.32
32 10 0.21
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (31 bp):
AATTATAAAAAATTATAGAAAAAATTATTAT
Found at i:7308997 original size:17 final size:17
Alignment explanation
Indices: 7308975--7309012 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
7308965 TTATATTTTC
* *
7308975 TAAAAATTATTTTTAAA
1 TAAAAACTAATTTTAAA
7308992 TAAAAACTAATTTTAAA
1 TAAAAACTAATTTTAAA
7309009 -AAAA
1 TAAAA
7309013 TCAAATATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (17 bp):
TAAAAACTAATTTTAAA
Found at i:7311805 original size:28 final size:26
Alignment explanation
Indices: 7311774--7311859 Score: 77
Period size: 28 Copynumber: 3.1 Consensus size: 26
7311764 ATATTCTTAA
7311774 AAATAAAAAAATATTAAAAATATGATAG
1 AAATAAAAAAATATTAAAAAT-T-ATAG
*
7311802 AAATTCAAAAAAT-TGGTAAAAATTATAG
1 AAA-TAAAAAAATAT--TAAAAATTATAG
7311830 AAAAATAAAAAAA-ATTATAAAATTATAG
1 --AAATAAAAAAATATTA-AAAATTATAG
7311858 AA
1 AA
7311860 GAACTATATA
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
26 2 0.04
27 2 0.04
28 18 0.37
29 17 0.35
30 10 0.20
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.26
Consensus pattern (26 bp):
AAATAAAAAAATATTAAAAATTATAG
Found at i:7323394 original size:21 final size:23
Alignment explanation
Indices: 7323368--7323413 Score: 78
Period size: 21 Copynumber: 2.1 Consensus size: 23
7323358 TCTATTTAAT
7323368 TATTTTAA-TTATTTAA-TTATA
1 TATTTTAATTTATTTAATTTATA
7323389 TATTTTAATTTATTTAATTTATA
1 TATTTTAATTTATTTAATTTATA
7323412 TA
1 TA
7323414 AGTAATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 8 0.35
22 8 0.35
23 7 0.30
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
TATTTTAATTTATTTAATTTATA
Found at i:7323422 original size:21 final size:21
Alignment explanation
Indices: 7323373--7323424 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
7323363 TTAATTATTT
**
7323373 TAATTATTTAATTATATATTT
1 TAATTATTTAATTATATATAG
7323394 TAATTTATTTAATT-TATATAAG
1 TAA-TTATTTAATTATATAT-AG
7323416 TAATTATTT
1 TAATTATTT
7323425 CATAAATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 14 0.52
22 13 0.48
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TAATTATTTAATTATATATAG
Found at i:7326228 original size:48 final size:48
Alignment explanation
Indices: 7326152--7326304 Score: 174
Period size: 48 Copynumber: 3.3 Consensus size: 48
7326142 TGATTTGTAC
* * *
7326152 AAAAAATGGACAGCATTTAAGCACCAATTTGGACAACATTAATATACT
1 AAAAAATGGACAGCAATTAAACATCAATTTGGACAACATTAATATACT
* *
7326200 AAAAAATGGGCAGCAATTAAACATCAATTTGGACAGCATTAATATACT
1 AAAAAATGGACAGCAATTAAACATCAATTTGGACAACATTAATATACT
* * * * *
7326248 CAAAAATAGACAGCAATTAACCATC-A-----ACAGCATTAATATGCT
1 AAAAAATGGACAGCAATTAAACATCAATTTGGACAACATTAATATACT
7326290 AAAAAATGGACAGCA
1 AAAAAATGGACAGCA
7326305 TCTTATCATT
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 28 0.30
47 1 0.01
48 64 0.69
ACGTcount: A:0.48, C:0.17, G:0.13, T:0.22
Consensus pattern (48 bp):
AAAAAATGGACAGCAATTAAACATCAATTTGGACAACATTAATATACT
Found at i:7326965 original size:42 final size:43
Alignment explanation
Indices: 7326847--7326966 Score: 145
Period size: 42 Copynumber: 2.8 Consensus size: 43
7326837 AGCTCGTACA
* * * ** *
7326847 ATGCC-ATATCTCAGATATGGTGTTACATGTTATAATATATCG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCATATATCG
* *
7326889 ATGCCACTATCCCAGACAGGGTCTTACATGAAATCATATA-CG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCATATATCG
*
7326931 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCA
7326967 CACCTCGAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 40 0.61
43 26 0.39
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACATGAAATCATATATCG
Done.