Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 24 of 189
Found at i:7696366 original size:27 final size:27
Alignment explanation
Indices: 7696326--7696386 Score: 113
Period size: 27 Copynumber: 2.2 Consensus size: 27
7696316 TGCACGCTAG
7696326 AGATCAACTTCCTAGGCATGCACTTGAA
1 AGAT-AACTTCCTAGGCATGCACTTGAA
7696354 AGATAACTTCCTAGGCATGCACTTGAA
1 AGATAACTTCCTAGGCATGCACTTGAA
7696381 AGATAA
1 AGATAA
7696387 ATAGTACATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (27 bp):
AGATAACTTCCTAGGCATGCACTTGAA
Found at i:7704670 original size:16 final size:16
Alignment explanation
Indices: 7704623--7704672 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
7704613 AAAAATCTTT
*
7704623 TATATT-TATAATATAA
1 TATATTATATAAT-TTA
*
7704639 TATATTAT-TACTTTTA
1 TATATTATATA-ATTTA
7704655 TATATTATATAATTTA
1 TATATTATATAATTTA
7704671 TA
1 TA
7704673 ACACAAAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 24 0.86
17 4 0.14
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
TATATTATATAATTTA
Found at i:7736078 original size:99 final size:99
Alignment explanation
Indices: 7735894--7736431 Score: 835
Period size: 99 Copynumber: 5.4 Consensus size: 99
7735884 AAACCATAGT
** * * *
7735894 TTGCAATTCAAAAGATTGAAGCCACAACGGCGAATCTTACTT-CTGGCGATGCAGTGGAACAGAT
1 TTGCAATTTGAAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGAT
* *
7735958 CGAAGCTACAACAGCGAATCTCACTTTCCCGACA
66 TGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* *
7735992 TTGCAATTTGAAAGATCGAAGCCACAATGGCGAATCTTACTTCTAGGCGATGCAGCGGAACAGAT
1 TTGCAATTTGAAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGAT
7736057 TGAAGCTACAACAGCGAATCTCACTTCCCCGACA
66 TGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* *
7736091 TTGCAATTTGAAAGATCGAAGCCACAATGGTGAATCTTACTTCCAGGCGATGCAGCGGAACAGAT
1 TTGCAATTTGAAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGAT
*
7736156 TGAAGCTACAACAACGAATCTCACTTCCCCGACA
66 TGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * * * * *
7736190 TTGCAATTTGAAAAATCGAAGCCACAATGGCAAATCTTATTTCCAGGCAATACAGCGGAACAGAT
1 TTGCAATTTGAAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGAT
7736255 TGAAGCTACAACAGCGAATCTCACTTCCCCGACA
66 TGAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * *
7736289 TTACAATTTGAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCAGAACAGAT
1 TTGCAATTTGAAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGAT
7736354 TGAAGCTACAACAGCGAATCTCACTTCCCCGACA
66 TGAAGCTACAACAGCGAATCTCACTTCCCCGACA
** * * *
7736388 TTGCAATTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCC
1 TTGCAATTTGAAAGATCGAAGCCACAACGGCGAATCTTACTTCC
7736432 CTGGCGGTGT
Statistics
Matches: 406, Mismatches: 33, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
98 38 0.09
99 368 0.91
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (99 bp):
TTGCAATTTGAAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGAT
TGAAGCTACAACAGCGAATCTCACTTCCCCGACA
Found at i:7736460 original size:50 final size:50
Alignment explanation
Indices: 7735954--7736462 Score: 140
Period size: 50 Copynumber: 10.3 Consensus size: 50
7735944 GCAGTGGAAC
* * * ***
7735954 AGATCGAAGCTACAACAGCGAATCTCACTTTCCCGACATTGCAATTTGAA
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAGTGCAATGAAAA
* * ** * ** * ** * *
7736004 AGATCGAAGCCACAATGGCGAATCTTACTT-CTAGGC-GATGCAGCGGAAC
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAG-TGCAATGAAAA
** * ***
7736053 AGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTTGAA
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAGTGCAATGAAAA
* * ** * * * * ** * *
7736103 AGATCGAAGCCACAATGGTGAATCTTACTT-CCAGGC-GATGCAGCGGAAC
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAG-TGCAATGAAAA
** * *
7736152 AGATTGAAGCTACAACAACGAATCTCACTTCCCCGACATTGCAATTTG-AAA
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAGTGCAA--TGAAAA
* * ** * * * * * * * ** * *
7736203 A-ATCGAAGCCACAATGGCAAATCTTA-TTTCCAGGCAATACAGCGGAAC
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAGTGCAATGAAAA
** * * ***
7736251 AGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTACAATTTGAA
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAGTGCAATGAAAA
** * * * * * *
7736301 AGATTGAAGCCACAACGGCGAATCTTACTT-CCAGGC-GATGC-A-GCAGAAC
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAG-TGCAATG-A-AAA
** * *
7736350 AGATTGAAGCTACAACAGCGAATCTCACTTCCCCGACATTGCAATTAAAA
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAGTGCAATGAAAA
** * * * * * *
7736400 AGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAATGAAAT
1 AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAGTGCAATGAAAA
7736450 AGATCAAAGCTAC
1 AGATCAAAGCTAC
7736463 GATGGTGAAT
Statistics
Matches: 324, Mismatches: 117, Indels: 36
0.68 0.25 0.08
Matches are distributed among these distances:
47 1 0.00
48 4 0.01
49 128 0.40
50 185 0.57
51 5 0.02
52 1 0.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (50 bp):
AGATCAAAGCTACAACAGCGAATCTCACTTCCCCGACAGTGCAATGAAAA
Found at i:7739806 original size:20 final size:20
Alignment explanation
Indices: 7739781--7739837 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
7739771 GATACAAGGT
*
7739781 AAGGTATTGATACTTTGT-A
1 AAGGTATTGATACTTTATGA
**
7739800 GAAGGTACCGATACTTTATGA
1 -AAGGTATTGATACTTTATGA
7739821 AAGGTATTGATATCTTT
1 AAGGTATTGATA-CTTT
7739838 TATTTTTGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 25 0.83
21 5 0.17
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGGTATTGATACTTTATGA
Found at i:7740304 original size:24 final size:24
Alignment explanation
Indices: 7740274--7740344 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 24
7740264 ATAAAAAAAT
7740274 TACAAAAATTATTAAATATTGTCA
1 TACAAAAATTATTAAATATTGTCA
* * *
7740298 TACAAAAATTTATAAAAAAAT-T--
1 TACAAAAA-TTATTAAATATTGTCA
*
7740320 TAC-AAAATAATTAAATATTGTCA
1 TACAAAAATTATTAAATATTGTCA
7740343 TA
1 TA
7740345 TCGTCACGTG
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
20 8 0.22
21 5 0.14
22 3 0.08
23 2 0.06
24 9 0.25
25 9 0.25
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.35
Consensus pattern (24 bp):
TACAAAAATTATTAAATATTGTCA
Found at i:7740308 original size:45 final size:45
Alignment explanation
Indices: 7740257--7740344 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
7740247 TAAAATTTAT
*
7740257 AAAATTTATAAAAAAA-TTACAAAAATTATTAAATATTGTCATACA
1 AAAATTTATAAAAAAATTTAC-AAAATAATTAAATATTGTCATACA
7740302 AAAATTTATAAAAAAATTTACAAAATAATTAAATATTGTCATA
1 AAAATTTATAAAAAAATTTACAAAATAATTAAATATTGTCATA
7740345 TCGTCACGTG
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
45 37 0.90
46 4 0.10
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (45 bp):
AAAATTTATAAAAAAATTTACAAAATAATTAAATATTGTCATACA
Found at i:7742518 original size:12 final size:12
Alignment explanation
Indices: 7742501--7742526 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7742491 GTTATTGGGT
7742501 TCTTTCTGGTCC
1 TCTTTCTGGTCC
7742513 TCTTTCTGGTCC
1 TCTTTCTGGTCC
7742525 TC
1 TC
7742527 CTATCAACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.35, G:0.15, T:0.50
Consensus pattern (12 bp):
TCTTTCTGGTCC
Found at i:7746988 original size:26 final size:26
Alignment explanation
Indices: 7746952--7747036 Score: 134
Period size: 26 Copynumber: 3.3 Consensus size: 26
7746942 TATTTTCTTG
7746952 AAATTTTACCAAGGGCAAAATTGTCA
1 AAATTTTACCAAGGGCAAAATTGTCA
7746978 AAATTTTACCAAGGGCAAAATTGTCA
1 AAATTTTACCAAGGGCAAAATTGTCA
* * *
7747004 AAATTTTACTAGGGGTAAAATTGTCA
1 AAATTTTACCAAGGGCAAAATTGTCA
*
7747030 AACTTTT
1 AAATTTT
7747037 GCTAGGGGTA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (26 bp):
AAATTTTACCAAGGGCAAAATTGTCA
Found at i:7747041 original size:26 final size:26
Alignment explanation
Indices: 7746952--7747050 Score: 126
Period size: 26 Copynumber: 3.8 Consensus size: 26
7746942 TATTTTCTTG
* * *
7746952 AAATTTTACCAAGGGCAAAATTGTCA
1 AAATTTTACTAGGGGTAAAATTGTCA
* * *
7746978 AAATTTTACCAAGGGCAAAATTGTCA
1 AAATTTTACTAGGGGTAAAATTGTCA
7747004 AAATTTTACTAGGGGTAAAATTGTCA
1 AAATTTTACTAGGGGTAAAATTGTCA
* *
7747030 AACTTTTGCTAGGGGTAAAAT
1 AAATTTTACTAGGGGTAAAAT
7747051 AGGGATGAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATTGTCA
Found at i:7752225 original size:20 final size:20
Alignment explanation
Indices: 7752200--7752240 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7752190 AACTACTCCA
7752200 TGCCTCACGCCCCAATTTTC
1 TGCCTCACGCCCCAATTTTC
7752220 TGCCTCACGCCCCAATTTTC
1 TGCCTCACGCCCCAATTTTC
7752240 T
1 T
7752241 TTCATTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.44, G:0.10, T:0.32
Consensus pattern (20 bp):
TGCCTCACGCCCCAATTTTC
Found at i:7761139 original size:97 final size:97
Alignment explanation
Indices: 7760972--7761150 Score: 232
Period size: 97 Copynumber: 1.8 Consensus size: 97
7760962 ATTGCTTTGA
* * * * * * * * **
7760972 ACGTTATGAATATGCAAGCCAAAATCCAAACAACTTTTTTTTGCAATCTTTGACACTGACTGTCA
1 ACGTTACGAATATGCAAACCAAAATCAAAACAACCTTTTTCTACAATCTTAGACACTAACCCTCA
*
7761037 TATCAACTTAGATCTAAAGTATGTTCTTTCAC
66 GATCAACTTAGATCTAAAGTATGTTCTTTCAC
* *
7761069 ACGTTACGAATATGCAAACCAAAATCAAAACAACCTTTTTCTACGATCTTAGTCACTAACCCTCA
1 ACGTTACGAATATGCAAACCAAAATCAAAACAACCTTTTTCTACAATCTTAGACACTAACCCTCA
*
7761134 GATCAACTTGGATCTAA
66 GATCAACTTAGATCTAA
7761151 TGTAAGTTTT
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
97 68 1.00
ACGTcount: A:0.35, C:0.23, G:0.11, T:0.31
Consensus pattern (97 bp):
ACGTTACGAATATGCAAACCAAAATCAAAACAACCTTTTTCTACAATCTTAGACACTAACCCTCA
GATCAACTTAGATCTAAAGTATGTTCTTTCAC
Found at i:7761762 original size:30 final size:30
Alignment explanation
Indices: 7761726--7761786 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
7761716 CCAAGGATTA
7761726 GTTGGACGTTCTTATCATGTCTAAGAACAC
1 GTTGGACGTTCTTATCATGTCTAAGAACAC
7761756 GTTGGACGTTCTTATCATGTCTAAGAACAC
1 GTTGGACGTTCTTATCATGTCTAAGAACAC
7761786 G
1 G
7761787 AAAACCAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (30 bp):
GTTGGACGTTCTTATCATGTCTAAGAACAC
Found at i:7766800 original size:6 final size:6
Alignment explanation
Indices: 7766789--7766832 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
7766779 CCGATTGATA
* * * *
7766789 TAGGAG TAGGAG TAGGTG TAGGAA TAGGAG TATGAG TAGAAG TA
1 TAGGAG TAGGAG TAGGAG TAGGAG TAGGAG TAGGAG TAGGAG TA
7766833 AAAGTAAAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.36, C:0.00, G:0.41, T:0.23
Consensus pattern (6 bp):
TAGGAG
Found at i:7771372 original size:15 final size:15
Alignment explanation
Indices: 7771352--7771402 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
7771342 ACAGGGAAAA
*
7771352 GATGATGACGAGGAT
1 GATGATGACGACGAT
* *
7771367 GATGATGACGATGAC
1 GATGATGACGACGAT
*
7771382 GAAGATGACGACGAT
1 GATGATGACGACGAT
*
7771397 AATGAT
1 GATGAT
7771403 AACTAAATTC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.37, C:0.10, G:0.33, T:0.20
Consensus pattern (15 bp):
GATGATGACGACGAT
Found at i:7772233 original size:20 final size:17
Alignment explanation
Indices: 7772197--7772229 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7772187 TTGCTTTGAT
7772197 TTTTTTTAATATTTTAA
1 TTTTTTTAATATTTTAA
*
7772214 TTTTTTTAATAATTTA
1 TTTTTTTAATATTTTA
7772230 TTAAATTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTTTAATATTTTAA
Found at i:7773100 original size:2 final size:2
Alignment explanation
Indices: 7773093--7773120 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7773083 CAAGTATGTT
7773093 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7773121 CCCATACTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7774466 original size:19 final size:19
Alignment explanation
Indices: 7774438--7774501 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
7774428 TCAACAAAAA
*
7774438 TAAAAAAATTTTAAAATTT
1 TAAAATAATTTTAAAATTT
7774457 TAAAATAATTTTTAAAA-TT
1 TAAAATAA-TTTTAAAATTT
* *
7774476 CAAAAT-ATTTATAAAAATTC
1 TAAAATAATTT-T-AAAATTT
7774496 TAAAAT
1 TAAAAT
7774502 TTATATTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
17 3 0.08
18 2 0.05
19 18 0.49
20 14 0.38
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
TAAAATAATTTTAAAATTT
Found at i:7774471 original size:20 final size:19
Alignment explanation
Indices: 7774446--7774501 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
7774436 AATAAAAAAA
7774446 TTTTAAAATTTTAAAATAAT
1 TTTTAAAATTTTAAAAT-AT
*
7774466 TTTTAAAA-TTCAAAATAT
1 TTTTAAAATTTTAAAATAT
* *
7774484 TTATAAAAATTCTAAAAT
1 TT-TTAAAATTTTAAAAT
7774502 TTATATTTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 4 0.13
19 12 0.40
20 14 0.47
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTTAAAATTTTAAAATAT
Found at i:7774528 original size:8 final size:9
Alignment explanation
Indices: 7774515--7774579 Score: 50
Period size: 8 Copynumber: 7.3 Consensus size: 9
7774505 TATTTTCAAC
7774515 AAATA-TAA
1 AAATATTAA
7774523 AAATATTAAA
1 AAATATT-AA
*
7774533 AAATCTTAA
1 AAATATTAA
7774542 AAGA-ATATAA
1 AA-ATAT-TAA
7774552 AAA-ATTAA
1 AAATATTAA
7774560 AAA-ATTAA
1 AAATATTAA
7774568 AAA-ATCTAA
1 AAATAT-TAA
7774577 AAA
1 AAA
7774580 AAACCCTAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
8 21 0.42
9 15 0.30
10 14 0.28
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.25
Consensus pattern (9 bp):
AAATATTAA
Found at i:7774536 original size:10 final size:10
Alignment explanation
Indices: 7774521--7774572 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
7774511 CAACAAATAT
7774521 AAAAATATTA
1 AAAAATATTA
*
7774531 AAAAATCTTA
1 AAAAATATTA
7774541 AAAGAATA-T-
1 AAA-AATATTA
7774550 AAAAA-ATT-
1 AAAAATATTA
7774558 AAAAA-ATTA
1 AAAAATATTA
7774567 AAAAAT
1 AAAAAT
7774573 CTAAAAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
7 1 0.03
8 11 0.31
9 8 0.22
10 13 0.36
11 3 0.08
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (10 bp):
AAAAATATTA
Found at i:7774556 original size:82 final size:78
Alignment explanation
Indices: 7774428--7774578 Score: 176
Period size: 82 Copynumber: 1.9 Consensus size: 78
7774418 TTGGTCTCTC
** * * * ** *
7774428 TCAACAAAAATAAAAAAATTTTAAAATTTTAAAATAATTTTTAAAATTCAAAATATTTATAAAAA
1 TCAACAAAAATAAAAAAATTAAAAAATCTTAAAAGAATATAAAAAATT-AAAA-AATTA-AAAAA
7774493 TTCTAAAATTTATATTT
63 -TCTAAAATTTATATTT
* *
7774510 TCAACAAATATAAAAATATTAAAAAATCTTAAAAGAATATAAAAAATTAAAAAATTAAAAAATCT
1 TCAACAAAAATAAAAAAATTAAAAAATCTTAAAAGAATATAAAAAATTAAAAAATTAAAAAATCT
7774575 AAAA
66 AAAA
7774579 AAAACCCTAA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
78 7 0.12
79 5 0.08
80 4 0.07
81 4 0.07
82 39 0.66
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33
Consensus pattern (78 bp):
TCAACAAAAATAAAAAAATTAAAAAATCTTAAAAGAATATAAAAAATTAAAAAATTAAAAAATCT
AAAATTTATATTT
Found at i:7774569 original size:7 final size:8
Alignment explanation
Indices: 7774515--7774580 Score: 69
Period size: 9 Copynumber: 7.4 Consensus size: 8
7774505 TATTTTCAAC
7774515 AAATATAAA
1 AAAT-TAAA
7774524 AATATTAAA
1 AA-ATTAAA
7774533 AAATCTTAAA
1 AAA--TTAAA
7774543 AGAATATAAA
1 A-AAT-TAAA
7774553 AAATTAAA
1 AAATTAAA
7774561 AAATTAAA
1 AAATTAAA
7774569 AAATCTAAA
1 AAAT-TAAA
7774578 AAA
1 AAA
7774581 AACCCTAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
8 17 0.33
9 19 0.37
10 13 0.25
11 2 0.04
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (8 bp):
AAATTAAA
Found at i:7777164 original size:13 final size:13
Alignment explanation
Indices: 7777076--7777167 Score: 73
Period size: 13 Copynumber: 6.9 Consensus size: 13
7777066 ATCCAATGTT
*
7777076 CCATTTCATATAT
1 CCATTTCATATAA
*
7777089 CTATTTCCATATAA
1 CCATTT-CATATAA
*
7777103 CCGA-GTCATATAA
1 CC-ATTTCATATAA
7777116 CCATTTCATAT-A
1 CCATTTCATATAA
*
7777128 TCATTTTTCATATAA
1 CCA--TTTCATATAA
*
7777143 CCGA-GTCATATAA
1 CC-ATTTCATATAA
7777156 CCATTTCATATA
1 CCATTTCATATA
7777168 TCATTTTTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
12 5 0.08
13 37 0.60
14 16 0.26
15 3 0.05
16 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (13 bp):
CCATTTCATATAA
Found at i:7777174 original size:40 final size:40
Alignment explanation
Indices: 7777076--7777181 Score: 187
Period size: 40 Copynumber: 2.6 Consensus size: 40
7777066 ATCCAATGTT
*
7777076 CCATTTCATATATC-TATTTCCATATAACCGAGTCATATAA
1 CCATTTCATATATCAT-TTTTCATATAACCGAGTCATATAA
7777116 CCATTTCATATATCATTTTTCATATAACCGAGTCATATAA
1 CCATTTCATATATCATTTTTCATATAACCGAGTCATATAA
7777156 CCATTTCATATATCATTTTTCATATA
1 CCATTTCATATATCATTTTTCATATA
7777182 TTATTTTTTT
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
40 63 0.98
41 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.42
Consensus pattern (40 bp):
CCATTTCATATATCATTTTTCATATAACCGAGTCATATAA
Found at i:7777193 original size:16 final size:14
Alignment explanation
Indices: 7777159--7777189 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7777149 CATATAACCA
7777159 TTTCATATATCATT
1 TTTCATATATCATT
*
7777173 TTTCATATATTATT
1 TTTCATATATCATT
7777187 TTT
1 TTT
7777190 TTCACCTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTCATATATCATT
Found at i:7790657 original size:24 final size:26
Alignment explanation
Indices: 7790630--7790680 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7790620 AAGAAATGAA
7790630 GAAAT-GAAAGA-AAG-AAAATTATAT
1 GAAATAGAAAGATAAGTAAAA-TATAT
*
7790654 GAAATAGAAGGATAAGTAAAATATAT
1 GAAATAGAAAGATAAGTAAAATATAT
7790680 G
1 G
7790681 TTCAAGAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 5 0.22
25 5 0.22
26 9 0.39
27 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.22
Consensus pattern (26 bp):
GAAATAGAAAGATAAGTAAAATATAT
Found at i:7794213 original size:3 final size:3
Alignment explanation
Indices: 7794205--7794248 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7794195 ACTCGAATGG
7794205 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7794249 CTCAGGCCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7801875 original size:21 final size:21
Alignment explanation
Indices: 7801834--7801876 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7801824 ACCCCAAACT
* *
7801834 CTCAAACCTTTTTACTTTTCC
1 CTCAAAACTTTTTACTCTTCC
7801855 CTCAAAAC-TTTTACTCCTTCC
1 CTCAAAACTTTTTACT-CTTCC
7801876 C
1 C
7801877 ACTTCCCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.21, C:0.37, G:0.00, T:0.42
Consensus pattern (21 bp):
CTCAAAACTTTTTACTCTTCC
Found at i:7802208 original size:19 final size:17
Alignment explanation
Indices: 7802123--7802208 Score: 63
Period size: 16 Copynumber: 5.0 Consensus size: 17
7802113 TTTTTAATAT
*
7802123 TTTCCCTCCAAAATTTTA
1 TTTCCC-CCAAACTTTTA
*
7802141 TTTCCCCC-TA--TTTA
1 TTTCCCCCAAACTTTTA
*
7802155 CTTTCCCTCAAACTTTTA
1 -TTTCCCCCAAACTTTTA
*
7802173 -TTCCCCAAAACTTTTTA
1 TTTCCCCCAAAC-TTTTA
7802190 TTTTCCCCCTAAACTTTTA
1 -TTTCCCCC-AAACTTTTA
7802209 CTTCTCACCC
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
14 4 0.07
15 7 0.13
16 11 0.20
17 7 0.13
18 10 0.19
19 11 0.20
20 4 0.07
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTCCCCCAAACTTTTA
Found at i:7809616 original size:27 final size:26
Alignment explanation
Indices: 7809578--7809630 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
7809568 AGCATAATCC
* *
7809578 AACTGAACTTTATATTGTTC-TTCATT
1 AACTAAACTTTAT-TGGTTCTTTCATT
7809604 AACTAAACATTTATTGGTTCTTTCATT
1 AACTAAAC-TTTATTGGTTCTTTCATT
7809631 TTCTTGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (26 bp):
AACTAAACTTTATTGGTTCTTTCATT
Found at i:7820259 original size:31 final size:31
Alignment explanation
Indices: 7820206--7820264 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
7820196 TTAAATTTGG
**
7820206 CAATTGTTCCCACATTGGTGTCTAAACTAGC
1 CAATTGTTCCCACATTAATGTCTAAACTAGC
* * *
7820237 CAATTGTTCTCATATTAATGTCTGAACT
1 CAATTGTTCCCACATTAATGTCTAAACT
7820265 TCTTTTTGTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (31 bp):
CAATTGTTCCCACATTAATGTCTAAACTAGC
Found at i:7820272 original size:90 final size:91
Alignment explanation
Indices: 7820169--7820361 Score: 250
Period size: 90 Copynumber: 2.1 Consensus size: 91
7820159 CATTGAGACT
* * *
7820169 TGAA-TTTTTTTTTGTTCAAGTTAA-CCCTTAAATTTGGCAATTGTTCCCACATTGGTGTCTAAA
1 TGAACTTTCTTTTTGTTCAAGTTAATCCCTT-AATTTGACAATTGTTCCCACATTGGAGTCTAAA
*
7820232 CTAGCCAATTG-TTCTCATATTAATGTC
65 CTAGCCAATTGTTTC-CATATTAAGGTC
* * *
7820259 TGAAC-TTCTTTTTGTTCAAGTTAATCCCTTAGTTTGACAATTGTTCCCACATTGGAGTGTGAAC
1 TGAACTTTCTTTTTGTTCAAGTTAATCCCTTAATTTGACAATTGTTCCCACATTGGAGTCTAAAC
* * *
7820323 TAGCTAATTGTTTCCATATTAGGGTT
66 TAGCCAATTGTTTCCATATTAAGGTC
7820349 TGAACTTTCTTTT
1 TGAACTTTCTTTT
7820362 GGCCCAAATT
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
90 74 0.83
91 15 0.17
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (91 bp):
TGAACTTTCTTTTTGTTCAAGTTAATCCCTTAATTTGACAATTGTTCCCACATTGGAGTCTAAAC
TAGCCAATTGTTTCCATATTAAGGTC
Found at i:7824578 original size:39 final size:41
Alignment explanation
Indices: 7824464--7824578 Score: 128
Period size: 40 Copynumber: 2.9 Consensus size: 41
7824454 GTTTGGATAC
* * * *
7824464 AAAACGCCACTAAAAATCAAGCATTAGTGGCG-CTTTAGGA
1 AAAACGCCGCTAAAAATAAAGCATTAGCGGCGTTTTTAGGA
* * * *
7824504 AAAACGCCGCTAAAGATACAGTATTAGCGGCGTTTTTTGG-
1 AAAACGCCGCTAAAAATAAAGCATTAGCGGCGTTTTTAGGA
*
7824544 AAAACGCCGCTAAAAAT-GAGCATTAGCGGCGTTTT
1 AAAACGCCGCTAAAAATAAAGCATTAGCGGCGTTTT
7824579 CCAGAAAGCG
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
39 16 0.25
40 42 0.67
41 5 0.08
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (41 bp):
AAAACGCCGCTAAAAATAAAGCATTAGCGGCGTTTTTAGGA
Found at i:7824591 original size:39 final size:40
Alignment explanation
Indices: 7824464--7824598 Score: 116
Period size: 40 Copynumber: 3.4 Consensus size: 40
7824454 GTTTGGATAC
* * *
7824464 AAAACGCCACTAAAAAT-CAAGCATTAGTGGCGCTTT--AGG
1 AAAACGCCGCTAAAAATAC-AGCATTAGCGGCGTTTTCCA-G
* * ***
7824503 AAAAACGCCGCTAAAGATACAGTATTAGCGGCGTTTTTTGG
1 -AAAACGCCGCTAAAAATACAGCATTAGCGGCGTTTTCCAG
*
7824544 AAAACGCCGCTAAAAAT-GAGCATTAGCGGCGTTTTCCAG
1 AAAACGCCGCTAAAAATACAGCATTAGCGGCGTTTTCCAG
* *
7824583 AAAGCGCCGCAAAAAA
1 AAAACGCCGCTAAAAA
7824599 CCCAAGCACA
Statistics
Matches: 78, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
39 31 0.40
40 45 0.58
41 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATACAGCATTAGCGGCGTTTTCCAG
Found at i:7824687 original size:41 final size:41
Alignment explanation
Indices: 7824630--7824828 Score: 253
Period size: 41 Copynumber: 4.9 Consensus size: 41
7824620 TTTTTATTTT
* * * *
7824630 TCGAGGCTTTAGCGGCGTTTTT-AGAGAAGTGCCGCTAATTC
1 TCGAGTCTTTAGCGGCGTTTTTGA-AAAAGCGCCGCTAATGC
7824671 TCGAGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
1 TCGAGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* *
7824712 TC-AGGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAACGC
1 TCGA-GTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
7824753 TC-AGGTCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGC
1 TCGA-GTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* *
7824794 TCGGGTGTTTAGCGGCGCTTTTT-AAAAAGCGCCGC
1 TCGAGTCTTTAGCGGCG-TTTTTGAAAAAGCGCCGC
7824829 AAAAAATATT
Statistics
Matches: 142, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
40 1 0.01
41 135 0.95
42 6 0.04
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (41 bp):
TCGAGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
Found at i:7824874 original size:34 final size:33
Alignment explanation
Indices: 7824831--7824902 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
7824821 AGCGCCGCAA
*
7824831 AAAAT-ATTTTTAAGTTTTTTGGGTACATTATTT
1 AAAATAATTTTTAAG-TTTTGGGGTACATTATTT
7824864 AAAATAATTTTTAAGTTTTGGGGTACATTATTT
1 AAAATAATTTTTAAGTTTTGGGGTACATTATTT
7824897 AAAATA
1 AAAATA
7824903 CTATTATTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
33 28 0.76
34 9 0.24
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.49
Consensus pattern (33 bp):
AAAATAATTTTTAAGTTTTGGGGTACATTATTT
Found at i:7829050 original size:20 final size:21
Alignment explanation
Indices: 7829025--7829072 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
7829015 TAACAAAAAT
* *
7829025 AATAATAATAATAAT-AATAG
1 AATAATAAGAATAATGAACAG
7829045 AATAAT-AGAATAATGAACAG
1 AATAATAAGAATAATGAACAG
7829065 AATAATAA
1 AATAATAA
7829073 AAATGCTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.29
20 16 0.67
21 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (21 bp):
AATAATAAGAATAATGAACAG
Found at i:7830285 original size:25 final size:25
Alignment explanation
Indices: 7830254--7830303 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
7830244 CTTAGGGCGT
* *
7830254 AAGATTCACTGTTGTAGCTTTAATC
1 AAGATTCACCGATGTAGCTTTAATC
*
7830279 AAGATTCACCGATGTGGCTTTAATC
1 AAGATTCACCGATGTAGCTTTAATC
7830304 TTTTTAACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (25 bp):
AAGATTCACCGATGTAGCTTTAATC
Found at i:7830441 original size:125 final size:125
Alignment explanation
Indices: 7829920--7830426 Score: 856
Period size: 125 Copynumber: 4.1 Consensus size: 125
7829910 TTCGTCATTA
* * *
7829920 TGGCTTTAATCTTTTTAACTGCAATGTCGGAGAGACAAGATTCACCAATTTGGTTTTAATCTGTT
1 TGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATT
* *
7829985 CCACTGCATCGCTTGGGGCGTAAGATTCGCTGTTGTAGCTTTAATCAAGATTCACCGATG
66 CCACTGCATCGCTTGGGGCGTAAGATTCACTATTGTAGCTTTAATCAAGATTCACCGATG
*
7830045 TGGATTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATT--CCAATTTGGCTTTAATCTATT
1 TGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATT
* * *
7830108 CCACTACATCGCTTGGGGCGTAAAATTCGCTATTGTAGCTTTAATCAAGATTCACCGATG
66 CCACTGCATCGCTTGGGGCGTAAGATTCACTATTGTAGCTTTAATCAAGATTCACCGATG
*
7830168 TGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAAATTCACCAATTTGGCTTTAATCTATT
1 TGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATT
* * * *
7830233 TCACTGCATTGCTTAGGGCGTAAGATTCACTGTTGTAGCTTTAATCAAGATTCACCGATG
66 CCACTGCATCGCTTGGGGCGTAAGATTCACTATTGTAGCTTTAATCAAGATTCACCGATG
*
7830293 TGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTTACCAATTTGGCTTTAATCTATT
1 TGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATT
*
7830358 CCACTGCATCACTTGGGGCGTAAGATTCACTATTGTAGCTTTAATCAAGATTCACCGATG
66 CCACTGCATCGCTTGGGGCGTAAGATTCACTATTGTAGCTTTAATCAAGATTCACCGATG
7830418 TGGCTTTAA
1 TGGCTTTAA
7830427 CCGTTTGAAT
Statistics
Matches: 357, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
123 116 0.32
125 241 0.68
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (125 bp):
TGGCTTTAATCTTTTTAACTGCAATGTCGGAGAAACAAGATTCACCAATTTGGCTTTAATCTATT
CCACTGCATCGCTTGGGGCGTAAGATTCACTATTGTAGCTTTAATCAAGATTCACCGATG
Found at i:7831686 original size:43 final size:42
Alignment explanation
Indices: 7831597--7831698 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 42
7831587 TGCCCCGATC
* *
7831597 TGATCAAAATTTGAGCTGCTCTGATCGCCTCATCCCCCAATT
1 TGATCAAAATTTGAGCTGCTCTGATCACCTAATCCCCCAATT
* **
7831639 TGATCCAAAATTTGAG-TCGCTCTGATCACTTAATGTCCC-ATT
1 TGAT-CAAAATTTGAGCT-GCTCTGATCACCTAATCCCCCAATT
7831681 ATGATCAAAATTTTGAGC
1 -TGATCAAAA-TTTGAGC
7831699 CGCCCTTTTC
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
42 13 0.26
43 37 0.74
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (42 bp):
TGATCAAAATTTGAGCTGCTCTGATCACCTAATCCCCCAATT
Found at i:7832986 original size:6 final size:6
Alignment explanation
Indices: 7832971--7833018 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
7832961 TGACTTCGAT
* *
7832971 TTTTTA TTTTTG TTTTTG TTTTTG TTTTTTT TGTTTTG TTTTT- TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG -TTTTTG T-TTTTG TTTTTG TTTTT
7833019 TTGAGTCTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
5 5 0.14
6 22 0.59
7 10 0.27
ACGTcount: A:0.02, C:0.00, G:0.10, T:0.88
Consensus pattern (6 bp):
TTTTTG
Found at i:7832993 original size:20 final size:18
Alignment explanation
Indices: 7832970--7833021 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 18
7832960 TTGACTTCGA
*
7832970 TTTTTTATTTTTGTTTTTG
1 TTTTTTTTTTTTG-TTTTG
7832989 TTTTTGTTTTTTTTGTTTTG
1 -TTTT-TTTTTTTTGTTTTG
7833009 TTTTTTTTTTTTG
1 TTTTTTTTTTTTG
7833022 AGTCTGAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 9 0.30
19 4 0.13
20 9 0.30
21 8 0.27
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.87
Consensus pattern (18 bp):
TTTTTTTTTTTTGTTTTG
Found at i:7833003 original size:15 final size:15
Alignment explanation
Indices: 7832983--7833020 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
7832973 TTTATTTTTG
7832983 TTTTTGTTTTTGTTT
1 TTTTTGTTTTTGTTT
7832998 TTTTTG-TTTTGTTT
1 TTTTTGTTTTTGTTT
7833012 TTTTT-TTTT
1 TTTTTGTTTT
7833021 GAGTCTGAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (15 bp):
TTTTTGTTTTTGTTT
Found at i:7835094 original size:19 final size:20
Alignment explanation
Indices: 7835065--7835113 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
7835055 CACTTCGTGA
* *
7835065 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
7835084 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
7835104 AAATG-AATGC
1 AAATGTAATGC
7835114 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:7836598 original size:111 final size:110
Alignment explanation
Indices: 7836461--7836762 Score: 498
Period size: 109 Copynumber: 2.7 Consensus size: 110
7836451 TTGTTTAAAT
7836461 GAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCC
1 GAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCC
* *
7836526 TTATTTTGAAAATTTTTTTAAAGGATATTAAGCCATTTGGTTGAAC
66 TTATTTT-AAAATATTTTAAAAGGATATTAAGCCATTTGGTTGAAC
* *
7836572 GAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCAAATTTCTAAACGCAAAACATTGCC
1 GAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCC
*
7836637 TTATTTTAAAA-ATTTTAAAAGGATATTAAGCCCTTTGGTTGAAC
66 TTATTTTAAAATATTTTAAAAGGATATTAAGCCATTTGGTTGAAC
* * * * *
7836681 AAGAAAAATCGACACCCAGCACCTTAAGACATGTTTTCTCGAATTTCCAAACGCAAAATATTGTC
1 GAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCC
7836746 TTATTTTAAAATATTTT
66 TTATTTTAAAATATTTT
7836763 CCTTTTTTGA
Statistics
Matches: 178, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
109 99 0.56
110 9 0.05
111 70 0.39
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31
Consensus pattern (110 bp):
GAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCC
TTATTTTAAAATATTTTAAAAGGATATTAAGCCATTTGGTTGAAC
Found at i:7836964 original size:18 final size:19
Alignment explanation
Indices: 7836943--7836989 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
7836933 ACATAAATGA
7836943 ACATAAAAAAAT-TAAAAT
1 ACATAAAAAAATATAAAAT
* *
7836961 ACAT-GAAAATTATAAAAT
1 ACATAAAAAAATATAAAAT
*
7836979 ATATAAAAAAA
1 ACATAAAAAAA
7836990 ATATGTATGT
Statistics
Matches: 22, Mismatches: 5, Indels: 3
0.73 0.17 0.10
Matches are distributed among these distances:
17 5 0.23
18 13 0.59
19 4 0.18
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.23
Consensus pattern (19 bp):
ACATAAAAAAATATAAAAT
Found at i:7839422 original size:19 final size:19
Alignment explanation
Indices: 7839392--7839429 Score: 60
Period size: 18 Copynumber: 2.0 Consensus size: 19
7839382 AGATGTTTTT
7839392 TAATTTATATAT-ATTAAA
1 TAATTTATATATAATTAAA
7839410 TAATTTCATATATAATTAAA
1 TAATTT-ATATATAATTAAA
7839430 AATATAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 6 0.33
20 6 0.33
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATTTATATATAATTAAA
Found at i:7839621 original size:7 final size:7
Alignment explanation
Indices: 7839611--7839651 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
7839601 TTAAGGTTTA
7839611 GGTTAGG
1 GGTTAGG
7839618 GGTTAGG
1 GGTTAGG
7839625 GGTTAGG
1 GGTTAGG
7839632 GGTTAGG
1 GGTTAGG
7839639 GGTTAGG
1 GGTTAGG
*
7839646 AGTTAG
1 GGTTAG
7839652 AGATCTAGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.17, C:0.00, G:0.54, T:0.29
Consensus pattern (7 bp):
GGTTAGG
Found at i:7841699 original size:43 final size:43
Alignment explanation
Indices: 7841584--7841966 Score: 352
Period size: 43 Copynumber: 9.0 Consensus size: 43
7841574 TTTTTCAAAA
* *
7841584 GTCAT-GT-TTTAGCGGCGTTTGTTA-AAAAGCGCCGCTAAAA
1 GTCATGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAG
** * * * *** *
7841624 GTCATCTTCATT-GTGGCGTTTACTG-TCTAAGCGTCGCTAAAG
1 GTCATGGTCTTTAGCGGCGTTT-GTGAGAAAAGCGCCGCTAAAG
* *
7841666 GTCGTGGTCTTTAGCGGCGTTT-TCGAGAAAAGCGTCGCTAAAG
1 GTCATGGTCTTTAGCGGCGTTTGT-GAGAAAAGCGCCGCTAAAG
* * * * * *
7841709 GTCATGGCCTTTAGCGGCATTTTTTACAAATGCGCCGCTAAAG
1 GTCATGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAG
* *
7841752 GTCAGGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
1 GTCATGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAG
* *
7841795 GTCATGATCTTTAGCGGCGTTTATG-GAAAAAGCGCCGCTAAAG
1 GTCATGGTCTTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAG
*
7841838 GTAATGGTCTTTAGCGGCGTTTGTG-GTAAAAGCGCCGCTAAAG
1 GTCATGGTCTTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAG
* **
7841881 ATCATGACCTTTAGCGGCGTTTGTGAG-AAAGCGCCGCTAAAG
1 GTCATGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAG
* ** * * * *
7841923 ATCATGACCTTTAGCGGCATTTTTAGAAAAAAGTGCCGCTAAAG
1 GTCATGGTCTTTAGCGGCGTTTGT-GAGAAAAGCGCCGCTAAAG
7841967 TTAGCGACGC
Statistics
Matches: 284, Mismatches: 47, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
40 5 0.02
41 10 0.04
42 62 0.22
43 191 0.67
44 16 0.06
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
GTCATGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAG
Found at i:7842046 original size:22 final size:22
Alignment explanation
Indices: 7842014--7842056 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7842004 TTGCGGCGCT
*
7842014 AAAAAGAGCCGCTAAAGGCCTA
1 AAAAAGAGCCGCTAAAAGCCTA
*
7842036 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGAGCCGCTAAAAGCCT
7842057 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.26, G:0.21, T:0.09
Consensus pattern (22 bp):
AAAAAGAGCCGCTAAAAGCCTA
Found at i:7847227 original size:13 final size:13
Alignment explanation
Indices: 7847211--7847236 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7847201 TTCGTTTAAG
7847211 TTTTTATTTTTAT
1 TTTTTATTTTTAT
7847224 TTTTTATTTTTAT
1 TTTTTATTTTTAT
7847237 ATCTTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:7851149 original size:45 final size:45
Alignment explanation
Indices: 7851065--7851153 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 45
7851055 TCTCGACTCA
** *
7851065 TCTTCTCAGTTGAGCTATTTACTGCCACTGCCATTTCTTTCTTCC
1 TCTTCTCAACTGAGCTATTTACTGCCACTGCCATCTCTTTCTTCC
* *
7851110 TCTTCTCAACTGAGCTATTTACTGTCAGC-GCCGTCTCTTTCTTC
1 TCTTCTCAACTGAGCTATTTACTGCCA-CTGCCATCTCTTTCTTC
7851154 ATTTTATTAG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
45 37 0.97
46 1 0.03
ACGTcount: A:0.13, C:0.31, G:0.12, T:0.43
Consensus pattern (45 bp):
TCTTCTCAACTGAGCTATTTACTGCCACTGCCATCTCTTTCTTCC
Found at i:7869774 original size:19 final size:19
Alignment explanation
Indices: 7869742--7869780 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7869732 GTTAAAAATC
* *
7869742 TTATCTTGAGTGTTTTTAT
1 TTATCTTCAGTGTTGTTAT
*
7869761 TTATCTTCATTGTTGTTAT
1 TTATCTTCAGTGTTGTTAT
7869780 T
1 T
7869781 GTTATGTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.08, G:0.13, T:0.64
Consensus pattern (19 bp):
TTATCTTCAGTGTTGTTAT
Found at i:7881923 original size:69 final size:71
Alignment explanation
Indices: 7881795--7881925 Score: 176
Period size: 71 Copynumber: 1.9 Consensus size: 71
7881785 GTTCTGGACA
* * *
7881795 TTGTTTTGATAGTCTGCTGGAAAATGTTATTTTAGTTTGTTAGTGAATAGAAGATGAAACTGTTG
1 TTGTTTTGATAGTCTGCTGGAAAATGTTACTTGAGTTTGTTAGTCAATAGAAGATGAAACTGTTG
7881860 TGGCAG
66 TGGCAG
* ** * *
7881866 TTGTTTTGATTGTCTGCTGGAACTTGTT-CTTGA-TTTGTTAGTCAGTAGAATATGAAACTG
1 TTGTTTTGATAGTCTGCTGGAAAATGTTACTTGAGTTTGTTAGTCAATAGAAGATGAAACTG
7881926 GAACTTTATT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
69 24 0.46
70 3 0.06
71 25 0.48
ACGTcount: A:0.24, C:0.08, G:0.25, T:0.43
Consensus pattern (71 bp):
TTGTTTTGATAGTCTGCTGGAAAATGTTACTTGAGTTTGTTAGTCAATAGAAGATGAAACTGTTG
TGGCAG
Found at i:7883128 original size:18 final size:18
Alignment explanation
Indices: 7883105--7883144 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
7883095 GTTTTTTGGT
7883105 CAATTATACATACACCAA
1 CAATTATACATACACCAA
*
7883123 CAATTATACATAGACCAA
1 CAATTATACATACACCAA
7883141 CAAT
1 CAAT
7883145 GTTTTTTAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.50, C:0.25, G:0.03, T:0.23
Consensus pattern (18 bp):
CAATTATACATACACCAA
Found at i:7883206 original size:33 final size:33
Alignment explanation
Indices: 7883169--7883232 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
7883159 ATAAAATTAA
7883169 ACCAACAAGTAATTTTAGGTCAATTATACATAC
1 ACCAACAAGTAATTTTAGGTCAATTATACATAC
*
7883202 ACCAACAATTAATTTTAGGTCAATTATACAT
1 ACCAACAAGTAATTTTAGGTCAATTATACAT
7883233 GCTTTATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (33 bp):
ACCAACAAGTAATTTTAGGTCAATTATACATAC
Found at i:7886322 original size:26 final size:27
Alignment explanation
Indices: 7886282--7886363 Score: 87
Period size: 26 Copynumber: 3.0 Consensus size: 27
7886272 TAAGAACATT
*
7886282 TTATGAAATTATATTTAATAATAATTA
1 TTATTAAATTATATTTAATAATAATTA
* *
7886309 TT-TTAAATTGTATTTAATCATATATT-
1 TTATTAAATTATATTTAATAATA-ATTA
* *
7886335 TTAATTAAAATATATTTAATATTAATTA
1 TT-ATTAAATTATATTTAATAATAATTA
7886363 T
1 T
7886364 AGTATCATAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
26 19 0.43
27 8 0.18
28 17 0.39
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (27 bp):
TTATTAAATTATATTTAATAATAATTA
Found at i:7886445 original size:18 final size:17
Alignment explanation
Indices: 7886417--7886451 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7886407 ATTATTAAGA
*
7886417 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7886434 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7886452 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7886542 original size:120 final size:120
Alignment explanation
Indices: 7886364--7886828 Score: 878
Period size: 120 Copynumber: 3.9 Consensus size: 120
7886354 TATTAATTAT
*
7886364 AGTATCATATATTATGATTTGAGTAAATT-ATATAAGAATATGAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGACTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
7886428 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
*
7886483 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGACTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
7886548 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
7886603 AGTATCATATATTATGATTTGACTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGACTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
7886668 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
* *
7886723 AGTATCATATATTATGATTTGACTAAATTAATATAAGGATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTGACTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
*
7886788 TTATATATTTTAATTAAAATATATTTAATAAAAATTATGTT
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
7886829 TAAATATGAT
Statistics
Matches: 341, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
119 29 0.09
120 312 0.91
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.47
Consensus pattern (120 bp):
AGTATCATATATTATGATTTGACTAAATTAATATAAGAATATGAATTATTAAGAATTTTATTAAA
TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
Found at i:7886565 original size:18 final size:17
Alignment explanation
Indices: 7886537--7886571 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7886527 ATTATTAAGA
*
7886537 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7886554 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7886572 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7886685 original size:18 final size:17
Alignment explanation
Indices: 7886657--7886691 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7886647 ATTATTAAGA
*
7886657 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7886674 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7886692 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7886805 original size:18 final size:17
Alignment explanation
Indices: 7886777--7886811 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7886767 ATTATTAAGA
*
7886777 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7886794 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7886812 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7886811 original size:16 final size:16
Alignment explanation
Indices: 7886777--7886831 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
7886767 ATTATTAAGA
7886777 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
7886794 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
7886810 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
7886824 ATGTTTAA
1 AT-TTTAA
7886832 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:7888263 original size:43 final size:43
Alignment explanation
Indices: 7888202--7888344 Score: 232
Period size: 43 Copynumber: 3.3 Consensus size: 43
7888192 AACTTTAGCG
* * *
7888202 GCCGCTAGAGACCAGGACCTTTAGCGGCGCTTTTCTCACAAAC
1 GCCGCTAAAGACCAGGACCTTTAGCGACGCTTTTCCCACAAAC
*
7888245 GCCGCTAAAGACCAGGACCTTTAGCGACGCTTTTCCCAAAAAC
1 GCCGCTAAAGACCAGGACCTTTAGCGACGCTTTTCCCACAAAC
*
7888288 GCCGCTAAAAACCAGGACCTTTAGCGACGCTTTTCCCACAAAC
1 GCCGCTAAAGACCAGGACCTTTAGCGACGCTTTTCCCACAAAC
*
7888331 GCCACTAAAGACCA
1 GCCGCTAAAGACCA
7888345 AGATAGTGCC
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 92 1.00
ACGTcount: A:0.29, C:0.34, G:0.19, T:0.18
Consensus pattern (43 bp):
GCCGCTAAAGACCAGGACCTTTAGCGACGCTTTTCCCACAAAC
Found at i:7888436 original size:107 final size:107
Alignment explanation
Indices: 7888245--7888446 Score: 246
Period size: 107 Copynumber: 1.9 Consensus size: 107
7888235 TCTCACAAAC
* * *
7888245 GCCGCTAAAGACCAGGACCTTTAGCGACGCTTTTCCCAAAAACGCCGCTAAAAACCAGGACCTTT
1 GCCGCTAAAGACCAGAACCTATAGCGACGCTTTTCCCAAAAACGCCGCTAAAAACCAAGACCTTT
* **
7888310 AGCGACGCTTTTCCCACAAACGCCACTAAAGACCAAGATAGT
66 AGCGACACTTTGACCACAAACGCCACTAAAGACCAAGATAGT
* * * * *
7888352 GCCGCTAAAGACCCA-AACCTATAGCGACGTTTTTTCCACAAACGCCGCT-ATAGCTCAAGACCT
1 GCCGCTAAAGA-CCAGAACCTATAGCGACGCTTTTCCCAAAAACGCCGCTAAAAAC-CAAGACCT
** *
7888415 TTAGCGACACTTTGATTACAAACGCCGCTAAA
64 TTAGCGACACTTTGACCACAAACGCCACTAAA
7888447 AGTACTATTA
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
106 3 0.04
107 73 0.92
108 3 0.04
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.20
Consensus pattern (107 bp):
GCCGCTAAAGACCAGAACCTATAGCGACGCTTTTCCCAAAAACGCCGCTAAAAACCAAGACCTTT
AGCGACACTTTGACCACAAACGCCACTAAAGACCAAGATAGT
Found at i:7888709 original size:15 final size:15
Alignment explanation
Indices: 7888689--7888719 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7888679 AGGGATATGG
7888689 ATCATCTTCATCTTC
1 ATCATCTTCATCTTC
*
7888704 ATCATCTTCTTCTTC
1 ATCATCTTCATCTTC
7888719 A
1 A
7888720 CTTTCAACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.00, T:0.48
Consensus pattern (15 bp):
ATCATCTTCATCTTC
Found at i:7893764 original size:7 final size:7
Alignment explanation
Indices: 7893754--7893784 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
7893744 CACTAACTCT
*
7893754 TAACCTC
1 TAACCCC
7893761 TAACCCC
1 TAACCCC
7893768 TAACCCC
1 TAACCCC
7893775 TAACCCC
1 TAACCCC
7893782 TAA
1 TAA
7893785 ACCTTGTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.19
Consensus pattern (7 bp):
TAACCCC
Found at i:7893916 original size:81 final size:83
Alignment explanation
Indices: 7893765--7893923 Score: 250
Period size: 81 Copynumber: 1.9 Consensus size: 83
7893755 AACCTCTAAC
*
7893765 CCCTAACCCCTAACCCCTAAACCTTGTTTAATATATAAATTAAAAAACACTAATTAATCTAAACC
1 CCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACC
*
7893830 CTAAACTCTAACCCAAAT
66 CTAAACCCTAACCCAAAT
* **
7893848 CCCTAACCCCTAACCCCTAAACCTTATTT-A-ATATAAATTAAAACATGCTAATTAATCTAAACC
1 CCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACC
*
7893911 TTAAACCCTAACC
66 CTAAACCCTAACC
7893924 TAACATCGAA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
81 41 0.59
82 1 0.01
83 28 0.40
ACGTcount: A:0.42, C:0.30, G:0.01, T:0.27
Consensus pattern (83 bp):
CCCTAACCCCTAACCCCTAAACCTTATTTAATATATAAATTAAAAAACACTAATTAATCTAAACC
CTAAACCCTAACCCAAAT
Found at i:7894441 original size:41 final size:39
Alignment explanation
Indices: 7894378--7894490 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 39
7894368 AAATATTTTT
*
7894378 GCGGCGCTTTTCTAAAAACGCCGCTAAAAGCCCGAGCATTA
1 GCGGCGCTTTT-TAAAAACGCCGCT-AAAGCCCGAGCACTA
**
7894419 GCGGCG-TTTTTGAAAAAGCGCCGCTAAAGATCGAGCACTA
1 GCGGCGCTTTTT-AAAAA-CGCCGCTAAAGCCCGAGCACTA
*
7894459 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCC
1 GCGGCGCTTTTT-AAAAACGCCGCTAAAGCCC
7894491 CGAAAGGTCA
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
39 1 0.02
40 38 0.61
41 23 0.37
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.20
Consensus pattern (39 bp):
GCGGCGCTTTTTAAAAACGCCGCTAAAGCCCGAGCACTA
Found at i:7894835 original size:13 final size:13
Alignment explanation
Indices: 7894819--7894864 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
7894809 TACACTAAAA
7894819 TTATATTATGAAT
1 TTATATTATGAAT
7894832 TTATA-TAT-ACAT
1 TTATATTATGA-AT
**
7894844 TTATATTATGCTT
1 TTATATTATGAAT
7894857 TTATATTA
1 TTATATTA
7894865 GTCGTGATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 1 0.04
12 10 0.36
13 17 0.61
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (13 bp):
TTATATTATGAAT
Found at i:7894841 original size:30 final size:29
Alignment explanation
Indices: 7894785--7894842 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
7894775 TTTGTGCATT
*
7894785 TAAAATATATTATAAATATTTTTATACAC
1 TAAAATATATTATAAATATTTATATACAC
*
7894814 TAAAATTATATTATGAAT-TTATATATACA
1 TAAAA-TATATTATAAATATT-TATATACA
7894843 TTTATATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (29 bp):
TAAAATATATTATAAATATTTATATACAC
Found at i:7897054 original size:11 final size:11
Alignment explanation
Indices: 7897003--7897054 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
7896993 TTCATTTGTT
7897003 TTCACCACC-A
1 TTCACCACCAA
*
7897013 TTAACCACCAA
1 TTCACCACCAA
*
7897024 TGCACCACCTAA
1 TTCACCACC-AA
* *
7897036 TACACCACCAC
1 TTCACCACCAA
7897047 TTCACCAC
1 TTCACCAC
7897055 TGTCCCTCCT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
10 8 0.24
11 16 0.47
12 10 0.29
ACGTcount: A:0.35, C:0.46, G:0.02, T:0.17
Consensus pattern (11 bp):
TTCACCACCAA
Found at i:7901211 original size:27 final size:27
Alignment explanation
Indices: 7901145--7901213 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
7901135 AAACCTAAAT
*
7901145 CTCGGATACCACTTGGTTCGAACTTGG
1 CTCGGATACCACTTGGTTCAAACTTGG
* * *
7901172 CTTGAATATCACTTGGTTCAAACTTGG
1 CTCGGATACCACTTGGTTCAAACTTGG
7901199 CTCGGATACCACTTG
1 CTCGGATACCACTTG
7901214 TCACGGGGCT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (27 bp):
CTCGGATACCACTTGGTTCAAACTTGG
Found at i:7909025 original size:3 final size:3
Alignment explanation
Indices: 7909017--7909044 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7909007 TTTTAATCTC
7909017 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7909045 GTTACTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:7909280 original size:14 final size:14
Alignment explanation
Indices: 7909261--7909293 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7909251 TTATAAATTT
7909261 TATATACATACATA
1 TATATACATACATA
*
7909275 TATATACATACTTA
1 TATATACATACATA
7909289 TATAT
1 TATAT
7909294 CTTTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.42
Consensus pattern (14 bp):
TATATACATACATA
Found at i:7912315 original size:26 final size:24
Alignment explanation
Indices: 7912264--7912309 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7912254 ATACTTATTT
*
7912264 TTATATCATAAAAAACTAAAATAA
1 TTATATCATAAAAAAATAAAATAA
7912288 TTATAT-ATTAAAAAAATAAAAT
1 TTATATCA-TAAAAAAATAAAAT
7912310 TTAATTCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (24 bp):
TTATATCATAAAAAAATAAAATAA
Found at i:7919397 original size:154 final size:145
Alignment explanation
Indices: 7919165--7919491 Score: 370
Period size: 154 Copynumber: 2.2 Consensus size: 145
7919155 AACATGTTCG
* * * *
7919165 TATTTCGACCTTTTTTTCGTATTTTTTTCTGAATTTTATTCCTTTAAAAAAATACTATTTTCTAA
1 TATTTCGACCATTTGTTCGTATTTTTTTCTCAATTTTATTACTTTAAAAAAATACTATTTTCTAA
** * * * * * *
7919230 TTTTATAATTTTACATTATTTTTGTATATTATGTTTGAAATGTATTCATTTAGTATGTTTTTTAA
66 TTTTATAATTTTACATTATTTCAGTACATTATGTTTGAAATATATTAAATTACTATATTTTTTAA
7919295 ATAAATTTAAAAAAACTCT
131 ATAAA-TTAAAAAAA---T
* *
7919314 TATTTCGGCCCTTTGTTCGTATTTTTTTCTCAGATTTTATTACTTTCAATAAAAATA-TATTATT
1 TATTTCGACCATTTGTTCGTATTTTTTTCTCA-ATTTTATTACTTT-AA-AAAAATACTATT-TT
* * * *
7919378 TTCATATTTTATTATTTTACATTGTTTCAGTACATTATGTTTGAAATATATTAAATTACTTTATT
62 CT-A-ATTTTATAATTTTACATTATTTCAGTACATTATGTTTGAAATATATTAAATTACTATATT
7919443 TTTTAAATAAATTAAAAAAAT
125 TTTTAAATAAATTAAAAAAAT
*
7919464 TATTTC-ATCCATTTGTTTGTATTTTTTT
1 TATTTCGA-CCATTTGTTCGTATTTTTTT
7919492 TTTCCAAATT
Statistics
Matches: 151, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
149 28 0.19
150 37 0.25
151 6 0.04
152 10 0.07
153 10 0.07
154 60 0.40
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.54
Consensus pattern (145 bp):
TATTTCGACCATTTGTTCGTATTTTTTTCTCAATTTTATTACTTTAAAAAAATACTATTTTCTAA
TTTTATAATTTTACATTATTTCAGTACATTATGTTTGAAATATATTAAATTACTATATTTTTTAA
ATAAATTAAAAAAAT
Found at i:7920152 original size:22 final size:24
Alignment explanation
Indices: 7920127--7920170 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
7920117 GCTTCTTGCA
7920127 ATTTCTTGATTC-AATT-TTTAGG
1 ATTTCTTGATTCTAATTGTTTAGG
* *
7920149 ATTTTTTTATTCTAATTGTTTA
1 ATTTCTTGATTCTAATTGTTTA
7920171 ATTATTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 4 0.22
24 4 0.22
ACGTcount: A:0.23, C:0.07, G:0.09, T:0.61
Consensus pattern (24 bp):
ATTTCTTGATTCTAATTGTTTAGG
Found at i:7921746 original size:23 final size:19
Alignment explanation
Indices: 7921718--7921779 Score: 52
Period size: 23 Copynumber: 2.8 Consensus size: 19
7921708 TTGATATTGT
7921718 TTTTAAACTTATTATTAGTGTAA
1 TTTTAAA-TTATTATTA-T-T-A
7921741 TTTTAAAATATAATATATTATTA
1 TTTT-AAAT-T-AT-TATTATTA
7921764 TTTTAAATTATTATTA
1 TTTTAAATTATTATTA
7921780 ACATTATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
19 5 0.14
20 2 0.06
21 1 0.03
22 4 0.11
23 10 0.29
24 5 0.14
25 3 0.09
26 5 0.14
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (19 bp):
TTTTAAATTATTATTATTA
Found at i:7921849 original size:24 final size:24
Alignment explanation
Indices: 7921786--7921854 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
7921776 ATTAACATTA
*
7921786 TTTAAATTTATCATACATTAATGT
1 TTTAAATTTATCATAGATTAATGT
* * **
7921810 TTTAAGTTTATTATAGATTTTTGT
1 TTTAAATTTATCATAGATTAATGT
*
7921834 TTTAAATTTAACATAGTATTA
1 TTTAAATTTATCATAG-ATTA
7921855 TTTACTTCAT
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
24 32 0.91
25 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (24 bp):
TTTAAATTTATCATAGATTAATGT
Found at i:7922138 original size:31 final size:31
Alignment explanation
Indices: 7922063--7922138 Score: 118
Period size: 30 Copynumber: 2.5 Consensus size: 31
7922053 TAAGTATATA
*
7922063 TTAATATTTTGATTTCACTATGATTAATAATT
1 TTAAGATTTT-ATTTCACTATGATTAATAATT
*
7922095 TTAAG-TTTTATTTCATTATGATTAATAATT
1 TTAAGATTTTATTTCACTATGATTAATAATT
7922125 TTAAGATTTTATTT
1 TTAAGATTTTATTT
7922139 ATATATGTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
30 25 0.61
31 12 0.29
32 4 0.10
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (31 bp):
TTAAGATTTTATTTCACTATGATTAATAATT
Found at i:7923576 original size:3 final size:3
Alignment explanation
Indices: 7923570--7923626 Score: 53
Period size: 3 Copynumber: 19.3 Consensus size: 3
7923560 AATAATTTGA
** * * * *
7923570 TAT TAT TAT TGC TAT TAT TAT TAT TAT CAA TAT T-G TAT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7923617 TAT TAT TAT T
1 TAT TAT TAT T
7923627 GCCATGCATT
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
2 1 0.02
3 40 0.98
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:7923723 original size:24 final size:23
Alignment explanation
Indices: 7923680--7923724 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
7923670 TACATACATA
*
7923680 TACATTTTTATAATATATATACT
1 TACATTTTTATAATAAATATACT
*
7923703 TACATTTTTTATTATAAATATA
1 TACA-TTTTTATAATAAATATA
7923725 TACTTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (23 bp):
TACATTTTTATAATAAATATACT
Found at i:7923732 original size:22 final size:23
Alignment explanation
Indices: 7923680--7923732 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
7923670 TACATACATA
*
7923680 TACA-TTTTTATAATATATATAC
1 TACATTTTTTATAATAAATATAC
*
7923702 TTACATTTTTTATTATAAATATA-
1 -TACATTTTTTATAATAAATATAC
7923725 TAC-TTTTT
1 TACATTTTT
7923733 ATGTTTCACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 5 0.19
22 3 0.11
23 4 0.15
24 15 0.56
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.57
Consensus pattern (23 bp):
TACATTTTTTATAATAAATATAC
Found at i:7923828 original size:42 final size:41
Alignment explanation
Indices: 7923782--7923873 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 41
7923772 TATCTATATA
* *
7923782 TTTTAATTCATATACATATATATGTATAT-ATACATACCCTTT
1 TTTTAATT-ATATACATATATATATATATCA-ACATACACTTT
* * *
7923824 TTTTAACTTATATACGTATCTATATATATCAATATACACTTT
1 TTTTAA-TTATATACATATATATATATATCAACATACACTTT
7923866 TTTTAATT
1 TTTTAATT
7923874 TACATGAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
41 2 0.05
42 38 0.88
43 3 0.07
ACGTcount: A:0.35, C:0.13, G:0.02, T:0.50
Consensus pattern (41 bp):
TTTTAATTATATACATATATATATATATCAACATACACTTT
Found at i:7925132 original size:11 final size:11
Alignment explanation
Indices: 7925116--7925149 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
7925106 TCAATTATTT
7925116 TCTCAATTTCC
1 TCTCAATTTCC
*
7925127 TCTCAATTTGC
1 TCTCAATTTCC
7925138 TCTCAATTTCC
1 TCTCAATTTCC
7925149 T
1 T
7925150 TCCAAAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.32, G:0.03, T:0.47
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:7925162 original size:22 final size:22
Alignment explanation
Indices: 7925116--7925165 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
7925106 TCAATTATTT
*
7925116 TCTCAATTTCCTCTCAATTTGC
1 TCTCAATTTCCTCTCAAATTGC
7925138 TCTCAATTTCCT-TCCAAAATT-C
1 TCTCAATTTCCTCT-C-AAATTGC
7925160 TCTCAA
1 TCTCAA
7925166 ATTCATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 1 0.04
22 20 0.80
23 4 0.16
ACGTcount: A:0.24, C:0.32, G:0.02, T:0.42
Consensus pattern (22 bp):
TCTCAATTTCCTCTCAAATTGC
Found at i:7925713 original size:112 final size:112
Alignment explanation
Indices: 7925516--7925729 Score: 365
Period size: 112 Copynumber: 1.9 Consensus size: 112
7925506 ATATTTTTTT
* *
7925516 GTACCAATCAAAACATTTTGTAAAATCTAACATTTTTTTAGTAAAATTATTAATTGTTAATTGTA
1 GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTATA
*
7925581 TTATTTGTTAGTAAATTTATCAAATTATATCAAATTATTAATTGTTA
66 TTAATTGTTAGTAAATTTATCAAATTATATCAAATTATTAATTGTTA
* * *
7925628 GTACCAGTCAAAATATTTTGTAAAATCTAACATTTTGTTAGTCAAATTATTAATTGTTAATTATA
1 GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTATA
*
7925693 TTAATTGTTAGTAAATTTATCAAATTATATCATATTA
66 TTAATTGTTAGTAAATTTATCAAATTATATCAAATTA
7925730 GGGTTAGGTT
Statistics
Matches: 95, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
112 95 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (112 bp):
GTACCAATCAAAACATTTTGTAAAATCTAACATTTTGTTAGTAAAATTATTAATTGTTAATTATA
TTAATTGTTAGTAAATTTATCAAATTATATCAAATTATTAATTGTTA
Found at i:7926001 original size:40 final size:38
Alignment explanation
Indices: 7925956--7926030 Score: 105
Period size: 40 Copynumber: 1.9 Consensus size: 38
7925946 CAGGGGCGCG
*
7925956 CTACGTGGCAGCAAAACGCGTCCACGTCAACGCGCTTTGC
1 CTACGTGGCAACAAAACGCG-CCACGT-AACGCGCTTTGC
* *
7925996 CTACGTGGCAACAAAGCGCGCCACGTAGCGCGCTT
1 CTACGTGGCAACAAAACGCGCCACGTAACGCGCTT
7926031 ACGTGGCGCG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 8 0.25
39 6 0.19
40 18 0.56
ACGTcount: A:0.23, C:0.35, G:0.27, T:0.16
Consensus pattern (38 bp):
CTACGTGGCAACAAAACGCGCCACGTAACGCGCTTTGC
Found at i:7926296 original size:11 final size:11
Alignment explanation
Indices: 7926280--7926313 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
7926270 ATGTATATTG
7926280 TTTATTTCAAA
1 TTTATTTCAAA
*
7926291 TTTATTTCCAA
1 TTTATTTCAAA
7926302 TTTATTTCAAA
1 TTTATTTCAAA
7926313 T
1 T
7926314 ACTAATTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTATTTCAAA
Found at i:7926332 original size:25 final size:22
Alignment explanation
Indices: 7926282--7926332 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
7926272 GTATATTGTT
* *
7926282 TATTTCAAATTTATTTCCAATT
1 TATTTCAAATTAATTTCCAATG
7926304 TATTTCAAATACTAATTATCCAATG
1 TATTTCAAAT--TAATT-TCCAATG
7926329 TATT
1 TATT
7926333 ATTATTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.42
24 4 0.17
25 10 0.42
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (22 bp):
TATTTCAAATTAATTTCCAATG
Found at i:7929134 original size:42 final size:42
Alignment explanation
Indices: 7929087--7929199 Score: 111
Period size: 42 Copynumber: 2.7 Consensus size: 42
7929077 CGAAGGCTGC
* *
7929087 ACAGAAGCCCAT-GAGTGCTAAACAGAAACCCATAAGGGTTGA
1 ACAGAAGCCCATAG-GAGCTAAACAGAAACCCATAAGGGTTAA
** **
7929129 ACAGAAGTTCATAGGAGCTAAATGGAAACCCATAAGGGTTAA
1 ACAGAAGCCCATAGGAGCTAAACAGAAACCCATAAGGGTTAA
* * * * *
7929171 ACTGAAGCTCAAAAGAGCTAAACGGAAAC
1 ACAGAAGCCCATAGGAGCTAAACAGAAAC
7929200 GTACTAGGGT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 58 0.98
43 1 0.02
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.15
Consensus pattern (42 bp):
ACAGAAGCCCATAGGAGCTAAACAGAAACCCATAAGGGTTAA
Found at i:7929232 original size:21 final size:20
Alignment explanation
Indices: 7929137--7929260 Score: 63
Period size: 21 Copynumber: 6.0 Consensus size: 20
7929127 GAACAGAAGT
*
7929137 TCATAGGAGCTAAATGGAAAC
1 TCATA-GAGCTAAACGGAAAC
* * * * *
7929158 CCATAAGGGTTAAACTGAAGC
1 TCAT-AGAGCTAAACGGAAAC
*
7929179 TCAAAAGAGCTAAACGGAAAC
1 TC-ATAGAGCTAAACGGAAAC
* *
7929200 GT-ACTAGGGTTAAACGGAAAC
1 -TCA-TAGAGCTAAACGGAAAC
* * *
7929221 TCATATGAG-TTAACTGAAGC
1 TCATA-GAGCTAAACGGAAAC
7929241 TCATGAGAGCTAAACGGAAA
1 TCAT-AGAGCTAAACGGAAA
7929261 GTAAACATTA
Statistics
Matches: 73, Mismatches: 22, Indels: 16
0.66 0.20 0.14
Matches are distributed among these distances:
20 19 0.26
21 51 0.70
22 3 0.04
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (20 bp):
TCATAGAGCTAAACGGAAAC
Found at i:7934655 original size:20 final size:20
Alignment explanation
Indices: 7934631--7934679 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
7934621 TTAAAAATAT
7934631 TTAAAAAAATTCA-AAAAAC
1 TTAAAAAAATTCATAAAAAC
** *
7934650 TATAAAAATTTTCATAAAATC
1 T-TAAAAAAATTCATAAAAAC
7934671 TTAAAAAAA
1 TTAAAAAAA
7934680 AAGAATGAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
19 1 0.04
20 16 0.70
21 6 0.26
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (20 bp):
TTAAAAAAATTCATAAAAAC
Found at i:7940561 original size:6 final size:6
Alignment explanation
Indices: 7940550--7940574 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7940540 AATTACATAT
7940550 AAATAA AAATAA AAATAA AAATAA A
1 AAATAA AAATAA AAATAA AAATAA A
7940575 TGAACATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:7944382 original size:23 final size:23
Alignment explanation
Indices: 7944356--7944410 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
7944346 AGGGCTTGTT
7944356 TAAAAATAATATAGTGAGTTGAA
1 TAAAAATAATATAGTGAGTTGAA
*
7944379 TAAAAATAGTATAGTGAGTTGAA
1 TAAAAATAATATAGTGAGTTGAA
* *
7944402 GAGAAATAA
1 TAAAAATAA
7944411 AAAAAATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.20, T:0.27
Consensus pattern (23 bp):
TAAAAATAATATAGTGAGTTGAA
Found at i:7946042 original size:6 final size:6
Alignment explanation
Indices: 7946031--7946056 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7946021 GCTCCTCTTC
7946031 TTAAAT TTAAAT TTAAAT TTAAAT TT
1 TTAAAT TTAAAT TTAAAT TTAAAT TT
7946057 TTATTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTAAAT
Found at i:7951835 original size:3 final size:3
Alignment explanation
Indices: 7951829--7951857 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7951819 AGAGAAAGAA
7951829 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
7951858 ACTTTACATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:7962089 original size:43 final size:43
Alignment explanation
Indices: 7961970--7962107 Score: 188
Period size: 43 Copynumber: 3.2 Consensus size: 43
7961960 TTTTTAAAAG
* * ** *
7961970 CGCCGCTAAAG-AACATGTTCTTTAGCGGCGCTTCTAACACAAG
1 CGCCGCTAAAGCTA-ATGTTCTTTAGCGGCGCTTTTTTCACAAA
7962013 CGCCGCTAAAGCTAATGTTCTTTAGCGGCGCTTTTTTCACAAA
1 CGCCGCTAAAGCTAATGTTCTTTAGCGGCGCTTTTTTCACAAA
* *
7962056 CGCCGCTAAAGCTAATGTTCTTTAGCGGCGCTTTTTTAAAAAA
1 CGCCGCTAAAGCTAATGTTCTTTAGCGGCGCTTTTTTCACAAA
*
7962099 CGCCACTAA
1 CGCCGCTAA
7962108 TTTTGGGGTT
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
43 85 0.99
44 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAAGCTAATGTTCTTTAGCGGCGCTTTTTTCACAAA
Found at i:7962485 original size:66 final size:66
Alignment explanation
Indices: 7962408--7962538 Score: 217
Period size: 66 Copynumber: 2.0 Consensus size: 66
7962398 TCGCTGCAGC
* * *
7962408 CTCTGCTTCTCTGGATGCCGCATCAGCTTTAAGTTGTCGCTGGAGTTCTTCATATTTCTTTTGAA
1 CTCTGCTTCTCTCGATGCCGCATCAGCTCTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAA
7962473 T
66 T
* *
7962474 CTCTGCTTCTCTCGCTGCCGCATCTGCTCTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAA
1 CTCTGCTTCTCTCGATGCCGCATCAGCTCTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAA
7962539 CCTCAACTGT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.15, C:0.24, G:0.19, T:0.42
Consensus pattern (66 bp):
CTCTGCTTCTCTCGATGCCGCATCAGCTCTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAA
T
Found at i:7968775 original size:22 final size:21
Alignment explanation
Indices: 7968736--7968776 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
7968726 ACTCTGACTA
7968736 TAAAAACTAAACTCCAAACTT
1 TAAAAACTAAACTCCAAACTT
7968757 TAAAACACTAAA-TCACAAAC
1 TAAAA-ACTAAACTC-CAAAC
7968777 CCAATATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (21 bp):
TAAAAACTAAACTCCAAACTT
Found at i:7968821 original size:16 final size:16
Alignment explanation
Indices: 7968800--7968869 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
7968790 CCCTAAACCA
7968800 TAAACTATAAAACCCT
1 TAAACTATAAAACCCT
* * **
7968816 TAAACTA-CATACTAT
1 TAAACTATAAAACCCT
*
7968831 AGTAAAC-ATTAAA-CCT
1 --TAAACTATAAAACCCT
7968847 TAAACTATAAAACCCT
1 TAAACTATAAAACCCT
7968863 TAAACTA
1 TAAACTA
7968870 CATACTATAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
14 5 0.12
15 9 0.22
16 19 0.47
17 7 0.17
ACGTcount: A:0.50, C:0.21, G:0.01, T:0.27
Consensus pattern (16 bp):
TAAACTATAAAACCCT
Found at i:7968829 original size:23 final size:23
Alignment explanation
Indices: 7968803--7968878 Score: 86
Period size: 23 Copynumber: 3.3 Consensus size: 23
7968793 TAAACCATAA
7968803 ACTATAAAACCCTTAAACTACAT
1 ACTATAAAACCCTTAAACTACAT
*
7968826 ACTATAGTAAA-CATTAAACCTTA-A-
1 ACTATA--AAACCCTTAAA-C-TACAT
7968850 ACTATAAAACCCTTAAACTACAT
1 ACTATAAAACCCTTAAACTACAT
7968873 ACTATA
1 ACTATA
7968879 GCCCTTAAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
21 2 0.05
22 5 0.11
23 18 0.41
24 12 0.27
25 5 0.11
26 2 0.05
ACGTcount: A:0.49, C:0.22, G:0.01, T:0.28
Consensus pattern (23 bp):
ACTATAAAACCCTTAAACTACAT
Found at i:7969314 original size:41 final size:40
Alignment explanation
Indices: 7969264--7969382 Score: 175
Period size: 41 Copynumber: 2.9 Consensus size: 40
7969254 AAATGAAGAG
*
7969264 CATTAGCGGCGCATCAATAAAAACGCCGCTAAAGCCCAGAA
1 CATTAGCGGCGC-TAAATAAAAACGCCGCTAAAGCCCAGAA
* * *
7969305 CATTAGCGGCGCTTAATTAAAAACGCCACTAAATCCCAGAA
1 CATTAGCGGCGC-TAAATAAAAACGCCGCTAAAGCCCAGAA
7969346 CATTAGCGGCGCTTAAATAAAAACGCCGCTAAAGCCC
1 CATTAGCGGCGC-TAAATAAAAACGCCGCTAAAGCCC
7969383 CCGAAAAGTC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.38, C:0.29, G:0.18, T:0.16
Consensus pattern (40 bp):
CATTAGCGGCGCTAAATAAAAACGCCGCTAAAGCCCAGAA
Found at i:7971755 original size:22 final size:21
Alignment explanation
Indices: 7971725--7971773 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
7971715 CAAATTTTTT
* *
7971725 AATATATATATGTTATGAAAAA
1 AATAAATATATATTAT-AAAAA
7971747 AATAAATATATATTATAAAAA
1 AATAAATATATATTATAAAAA
*
7971768 TATAAA
1 AATAAA
7971774 AATTATGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (21 bp):
AATAAATATATATTATAAAAA
Found at i:7971840 original size:27 final size:27
Alignment explanation
Indices: 7971810--7971870 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
7971800 AAAATTATTT
*
7971810 AAAACATT-AAAAAATATAGAAAAGTGC
1 AAAAAATTGAAAAAA-ATAGAAAAGTGC
** *
7971837 AAAAAATTGTTAAAAATGGAAAAGTGC
1 AAAAAATTGAAAAAAATAGAAAAGTGC
7971864 AAAAAAT
1 AAAAAAT
7971871 ATTGTTACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 25 0.86
28 4 0.14
ACGTcount: A:0.62, C:0.05, G:0.13, T:0.20
Consensus pattern (27 bp):
AAAAAATTGAAAAAAATAGAAAAGTGC
Found at i:7971934 original size:10 final size:8
Alignment explanation
Indices: 7971888--7971931 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
7971878 CAAATTAATC
7971888 AAAAA-AT
1 AAAAATAT
*
7971895 AATAATAT
1 AAAAATAT
* *
7971903 AAAACTAC
1 AAAAATAT
7971911 AAAAATAT
1 AAAAATAT
7971919 AAAAATAT
1 AAAAATAT
7971927 AAAAA
1 AAAAA
7971932 AATGTTTACA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
7 4 0.13
8 26 0.87
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (8 bp):
AAAAATAT
Found at i:7973700 original size:22 final size:22
Alignment explanation
Indices: 7973668--7973716 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
7973658 GCAAAGTCAG
7973668 ATAAAACAATTAAAAT-AAATA
1 ATAAAACAATTAAAATAAAATA
*
7973689 ACTAAAATAATTAAAATAAAATA
1 A-TAAAACAATTAAAATAAAATA
7973712 ATAAA
1 ATAAA
7973717 TTTACGAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 18 0.72
23 6 0.24
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAAACAATTAAAATAAAATA
Found at i:7974746 original size:21 final size:21
Alignment explanation
Indices: 7974720--7974761 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7974710 TATGTGTGAA
*
7974720 AGTTTCGTGATTTAATTTTAT
1 AGTTTCGTGACTTAATTTTAT
7974741 AGTTTCGTGACTTAATTTTAT
1 AGTTTCGTGACTTAATTTTAT
7974762 CATTTAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.07, G:0.14, T:0.55
Consensus pattern (21 bp):
AGTTTCGTGACTTAATTTTAT
Found at i:7975799 original size:31 final size:30
Alignment explanation
Indices: 7975764--7976533 Score: 312
Period size: 31 Copynumber: 25.2 Consensus size: 30
7975754 GCATATAGGA
*
7975764 TGCCGAATTGGATTTGTATATGATTATATAT
1 TGCCGAATT-GATTTGTATATGATTATACAT
* *
7975795 TGCCGAACTTGATTCATG-A-ATGGTTATACCT
1 TGCCGAA-TTGATT--TGTATATGATTATACAT
*
7975826 TGCTGAATTG-TTTGATATATGGA-TATA-AGT
1 TGCCGAATTGATTTG-TATAT-GATTATACA-T
* * *
7975856 TGTCGAATTGATTTGTATATG-TTGTACCT
1 TGCCGAATTGATTTGTATATGATTATACAT
* * * * *
7975885 TGCTGAAATTAATTTGTACATGGTTATATAT
1 TGCCG-AATTGATTTGTATATGATTATACAT
* * * * *
7975916 TGTCGATATTGAATTGTTTATGAATATAGGA-
1 TGCCGA-ATTGATTTGTATATGATTATA-CAT
* *
7975947 TGTCGAATTGGATTTGTATATGATTATATAT
1 TGCCGAATT-GATTTGTATATGATTATACAT
* *
7975978 TGCCGAACTTGATTCGTGA-ATTG-TTATACCT
1 TGCCGAA-TTGATTTGT-ATA-TGATTATACAT
7976009 TGCCGAATTG-TTTGGTATATGGA-TATA-AGT
1 TGCCGAATTGATTT-GTATAT-GATTATACA-T
* * * *
7976039 TGTCGAATTGATTCGTATATG-TTGTACCT
1 TGCCGAATTGATTTGTATATGATTATACAT
* * * * *
7976068 TGCTGAAATTAATTTGTACATGGTTATATAT
1 TGCCG-AATTGATTTGTATATGATTATACAT
* * * * *
7976099 TGTCGATATTGAATTGTTTATGAATATAGGA-
1 TGCCGA-ATTGATTTGTATATGATTATA-CAT
*
7976130 TGCCGAATTGGATTTGTATATGATTATATAT
1 TGCCGAATT-GATTTGTATATGATTATACAT
* * *
7976161 TGCCGAACTTGATTCGTGA-ATGGTTATACCT
1 TGCCGAA-TTGATTTGT-ATATGATTATACAT
*
7976192 TGCCGAATTG-TTTGGTATATGGATGTA-A-GT
1 TGCCGAATTGATTT-GTATAT-GAT-TATACAT
* * * *
7976222 TGTCGAATTGATTCGTATATG-TTGTACCT
1 TGCCGAATTGATTTGTATATGATTATACAT
* * * * *
7976251 TGCTGAAATTAATTTGTACATGGTTATATAT
1 TGCCG-AATTGATTTGTATATGATTATACAT
** * * * *
7976282 TGTTGATATTGAATTGTTTATGAATATAGGA-
1 TGCCGA-ATTGATTTGTATATGATTATA-CAT
*
7976313 TGCCGAATTGGATTTGTATATGATTATATAT
1 TGCCGAATT-GATTTGTATATGATTATACAT
* * * *
7976344 TGTCGAACTTGATTCGTGTATGGTTATACAT
1 TGCCGAA-TTGATTTGTATATGATTATACAT
*
7976375 TGCCAAATTG-TTTGGTATATGGA-TATA-AGT
1 TGCCGAATTGATTT-GTATAT-GATTATACA-T
* * * *
7976405 TGCTGAATTGATTCT-TTTATGGTTGTACAT
1 TGCCGAATTGATT-TGTATATGATTATACAT
* * * * * *
7976435 TGCTGAAATTAATTCGTACATGGTTATATAT
1 TGCCG-AATTGATTTGTATATGATTATACAT
* * * * *
7976466 TGTCGACATTGAATTG-ATTATGAATATAGAA
1 TGCCGA-ATTGATTTGTA-TATGATTATACAT
* *
7976497 TGCCGAATTTAATTTGTGTATGATTATACAT
1 TGCCGAA-TTGATTTGTATATGATTATACAT
7976528 TGCCGA
1 TGCCGA
7976534 TGTAACAGGC
Statistics
Matches: 543, Mismatches: 133, Indels: 126
0.68 0.17 0.16
Matches are distributed among these distances:
27 3 0.01
28 2 0.00
29 35 0.06
30 165 0.30
31 317 0.58
32 19 0.03
33 2 0.00
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.43
Consensus pattern (30 bp):
TGCCGAATTGATTTGTATATGATTATACAT
Found at i:7976019 original size:183 final size:183
Alignment explanation
Indices: 7975705--7976533 Score: 1408
Period size: 183 Copynumber: 4.5 Consensus size: 183
7975695 TATACATTGT
* *
7975705 TGAAATTAATTCGTACATGGTTATATATTGTCGATATTGAATTGTTTATGCATATAGGATGCCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
* *
7975770 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCATGAATGGTTATACCTTGCTGAATT
66 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
* *
7975835 GTTTGATATATGGATATAAGTTGTCGAATTGATTTGTATATGTTGTACCTTGC
131 GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
*
7975888 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGTCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
*
7975953 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATTGTTATACCTTGCCGAATT
66 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
7976018 GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
131 GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
7976071 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
7976136 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
66 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
*
7976201 GTTTGGTATATGGATGTAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
131 GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
*
7976254 TGAAATTAATTTGTACATGGTTATATATTGTTGATATTGAATTGTTTATGAATATAGGATGCCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
* * * *
7976319 ATTGGATTTGTATATGATTATATATTGTCGAACTTGATTCGTGTATGGTTATACATTGCCAAATT
66 ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
* * *
7976384 GTTTGGTATATGGATATAAGTTG-CTGAATTGATTCTTTTATGGTTGTACATTGC
131 GTTTGGTATATGGATATAAGTTGTC-GAATTGATTCGTATAT-GTTGTACCTTGC
* * * *
7976438 TGAAATTAATTCGTACATGGTTATATATTGTCGACATTGAATTGATTATGAATATAGAATGCCGA
1 TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
** * *
7976503 ATTTAATTTGTGTATGATTATACATTGCCGA
66 ATTGGATTTGTATATGATTATATATTGCCGA
7976534 TGTAACAGGC
Statistics
Matches: 614, Mismatches: 30, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
182 1 0.00
183 516 0.84
184 97 0.16
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.43
Consensus pattern (183 bp):
TGAAATTAATTTGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCCGA
ATTGGATTTGTATATGATTATATATTGCCGAACTTGATTCGTGAATGGTTATACCTTGCCGAATT
GTTTGGTATATGGATATAAGTTGTCGAATTGATTCGTATATGTTGTACCTTGC
Found at i:7977159 original size:14 final size:13
Alignment explanation
Indices: 7977122--7977169 Score: 53
Period size: 14 Copynumber: 3.7 Consensus size: 13
7977112 AGTATGTTAC
*
7977122 TATTTTATTATAT
1 TATTATATTATAT
* *
7977135 T-GTAAATTATAT
1 TATTATATTATAT
7977147 TAATTATATTATAT
1 T-ATTATATTATAT
7977161 TATTATATT
1 TATTATATT
7977170 TTAAATAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
12 9 0.32
13 9 0.32
14 10 0.36
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:7977305 original size:11 final size:11
Alignment explanation
Indices: 7977286--7977315 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7977276 GTAAATAATT
7977286 TTATATTATTA
1 TTATATTATTA
*
7977297 TTTTATTATTA
1 TTATATTATTA
7977308 TTATATTA
1 TTATATTA
7977316 AACTAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATATTATTA
Found at i:7979100 original size:17 final size:17
Alignment explanation
Indices: 7979078--7979111 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7979068 ACGTGGCATG
7979078 TACCTAAGTAATGTATA
1 TACCTAAGTAATGTATA
*
7979095 TACCTAAGTGATGTATA
1 TACCTAAGTAATGTATA
7979112 GGGATTAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (17 bp):
TACCTAAGTAATGTATA
Found at i:7980286 original size:43 final size:43
Alignment explanation
Indices: 7980139--7980286 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 43
7980129 GGTGTGATTT
**
7980139 CATGTAAGACCATATCTGGGACATTGGCATCGA-A-GTAAGAAAA
1 CATGTAAGACCATATCTGGGACATTGGCATCGATATGT--GTTAA
** * *
7980182 CGGGTAAGACCATGTCTGGGACATTGGCATCGTATATG-ATT--
1 CATGTAAGACCATATCTGGGACATTGGCATCG-ATATGTGTTAA
* * * * *
7980223 CGTATAAGACCCTGTCTGGGACAGTGGCATCGATATGTGTTAA
1 CATGTAAGACCATATCTGGGACATTGGCATCGATATGTGTTAA
7980266 CATGTAAGACCATATCTGGGA
1 CATGTAAGACCATATCTGGGA
7980287 TATGACATTG
Statistics
Matches: 84, Mismatches: 15, Indels: 12
0.76 0.14 0.11
Matches are distributed among these distances:
40 5 0.06
41 30 0.36
43 46 0.55
44 1 0.01
45 1 0.01
46 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (43 bp):
CATGTAAGACCATATCTGGGACATTGGCATCGATATGTGTTAA
Found at i:7994163 original size:18 final size:17
Alignment explanation
Indices: 7994139--7994212 Score: 67
Period size: 20 Copynumber: 4.0 Consensus size: 17
7994129 GTTTAAATTT
7994139 TTTTAAAAAATTAAAAA
1 TTTTAAAAAATTAAAAA
*
7994156 TTTGTAAAACATTATTAAAA
1 TTT-TAAAAAATTA--AAAA
7994176 TTTATAAAAATATTAAATAA
1 TTT-TAAAAA-ATTAAA-AA
* *
7994196 ATTTCAAAAATTAAAAA
1 TTTTAAAAAATTAAAAA
7994213 ATAGAATGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
17 5 0.11
18 15 0.32
19 7 0.15
20 16 0.34
21 4 0.09
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (17 bp):
TTTTAAAAAATTAAAAA
Found at i:7994175 original size:20 final size:18
Alignment explanation
Indices: 7994142--7994192 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 18
7994132 TAAATTTTTT
*
7994142 TAAAAA-ATTAAAAATTTG
1 TAAAAATATT-AAAATTTA
7994160 TAAAACATTATTAAAATTTA
1 TAAAA-A-TATTAAAATTTA
7994180 TAAAAATATTAAA
1 TAAAAATATTAAA
7994193 TAAATTTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 12 0.41
19 2 0.07
20 12 0.41
21 3 0.10
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (18 bp):
TAAAAATATTAAAATTTA
Found at i:7994495 original size:66 final size:66
Alignment explanation
Indices: 7994410--7994543 Score: 241
Period size: 66 Copynumber: 2.0 Consensus size: 66
7994400 AGGATGTATG
***
7994410 AAAAAAATATTTTATAAAATAAATAAATAATTTTAATTTTAATTTTATTAATCGTATAGATACAC
1 AAAAAAATATTTTATAAAATAAATAAATAAAAATAATTTTAATTTTATTAATCGTATAGATACAC
7994475 A
66 A
7994476 AAAAAAATATTTTATAAAATAAATAAATAAAAATAATTTTAATTTTATTAATCGTATAGATACAC
1 AAAAAAATATTTTATAAAATAAATAAATAAAAATAATTTTAATTTTATTAATCGTATAGATACAC
7994541 A
66 A
7994542 AA
1 AA
7994544 TTTAGTTAGA
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.38
Consensus pattern (66 bp):
AAAAAAATATTTTATAAAATAAATAAATAAAAATAATTTTAATTTTATTAATCGTATAGATACAC
A
Found at i:7995537 original size:26 final size:26
Alignment explanation
Indices: 7995499--7995564 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 26
7995489 CCCATTTTTT
* * *
7995499 AATAAACATTAAAAAATTATATCAAA
1 AATAAAAAATAAAAAAGTATATCAAA
* *
7995525 AATAAAAAATAAAAAAGTATTTTAAA
1 AATAAAAAATAAAAAAGTATATCAAA
7995551 AAT-AAAAATAAAAA
1 AATAAAAAATAAAAA
7995565 TAAAAATATA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
25 11 0.31
26 24 0.69
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (26 bp):
AATAAAAAATAAAAAAGTATATCAAA
Done.