Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 28 of 189
Found at i:9047279 original size:13 final size:12
Alignment explanation
Indices: 9047256--9047288 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9047246 TTTGATGTTA
9047256 TTTATTATTTAT
1 TTTATTATTTAT
9047268 TTTATATATTTA-
1 TTTAT-TATTTAT
9047280 TTTATTATT
1 TTTATTATT
9047289 CTTTCACTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 4 0.20
12 10 0.50
13 6 0.30
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTATTATTTAT
Found at i:9047443 original size:6 final size:6
Alignment explanation
Indices: 9047432--9047459 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
9047422 ATTATTGATT
9047432 ATTGCC ATTGCC ATTGCC ATTGCC ATTG
1 ATTGCC ATTGCC ATTGCC ATTGCC ATTG
9047460 TTTATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.36
Consensus pattern (6 bp):
ATTGCC
Found at i:9065126 original size:3 final size:3
Alignment explanation
Indices: 9065118--9065146 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
9065108 ATATTGCCTC
9065118 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
9065147 AACCATGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:9069797 original size:13 final size:13
Alignment explanation
Indices: 9069779--9069809 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
9069769 CAGATGAGTA
9069779 TTTTTATTTTTAT
1 TTTTTATTTTTAT
*
9069792 TTTTTATTTTTCT
1 TTTTTATTTTTAT
9069805 TTTTT
1 TTTTT
9069810 TTGTTGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:9070268 original size:7 final size:6
Alignment explanation
Indices: 9070252--9070303 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
9070242 GTTTTCCTGC
* *
9070252 AAAAAT AAAAAT GAAAAT -AAAAT AAAATAGT AAAAAT AAATAAT AATAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA-A-T AAAAAT AAA-AAT AAAAAT
9070302 AA
1 AA
9070304 TAGGAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 5 0.12
6 23 0.57
7 7 0.17
8 5 0.12
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:9070287 original size:25 final size:25
Alignment explanation
Indices: 9070257--9070306 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
9070247 CCTGCAAAAA
9070257 TAAAAATGAAAATAA-AATAA-AATAG
1 TAAAAAT--AAATAATAATAATAATAG
9070282 TAAAAATAAATAATAATAATAATAG
1 TAAAAATAAATAATAATAATAATAG
9070307 GAATTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 6 0.26
24 5 0.22
25 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (25 bp):
TAAAAATAAATAATAATAATAATAG
Found at i:9075700 original size:16 final size:15
Alignment explanation
Indices: 9075677--9075729 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 15
9075667 GATCTATTAT
*
9075677 TTTAAATTTTTAGAA
1 TTTAAATTTTTAAAA
9075692 TTTATAATTTTTAAAA
1 TTTA-AATTTTTAAAA
9075708 TTTTAAAATTTATTATAAA
1 -TTT-AAATTT-TTA-AAA
9075727 TTT
1 TTT
9075730 TCTAGAATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 4 0.12
16 10 0.31
17 8 0.25
18 7 0.22
19 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TTTAAATTTTTAAAA
Found at i:9075709 original size:45 final size:44
Alignment explanation
Indices: 9075652--9075755 Score: 129
Period size: 44 Copynumber: 2.3 Consensus size: 44
9075642 AACATTTTTC
* ** * *
9075652 TATTTTTGAAATTTTGATCTATTATTTTAAATTTT-TAGAATTTA
1 TATTTTTGAAATTTTAAAAT-TTATTATAAATTTTCTAGAATGTA
*
9075696 TAATTTTTAAAATTTTAAAATTTATTATAAATTTTCTAGAATGTA
1 T-ATTTTTGAAATTTTAAAATTTATTATAAATTTTCTAGAATGTA
9075741 TATTTTTGAAATTTT
1 TATTTTTGAAATTTT
9075756 CTAGAATTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
44 27 0.53
45 24 0.47
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.57
Consensus pattern (44 bp):
TATTTTTGAAATTTTAAAATTTATTATAAATTTTCTAGAATGTA
Found at i:9082332 original size:47 final size:47
Alignment explanation
Indices: 9082235--9082334 Score: 148
Period size: 47 Copynumber: 2.1 Consensus size: 47
9082225 CTTATAACTG
*
9082235 TTTGTTGGGGAGACCTTGGATACACTCGGCCTTCATCACTGCATCGAAA
1 TTTGTTGGGGAGACCTTGGATACA--CAGCCTTCATCACTGCATCGAAA
*
9082284 TTTGTTGGGGAGACCTTGGATATCA-AGCCTTCATCACTTCATCGAAA
1 TTTGTTGGGGAGACCTTGGATA-CACAGCCTTCATCACTGCATCGAAA
9082331 TTTG
1 TTTG
9082335 AAGTTAGTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
47 24 0.50
49 22 0.46
50 2 0.04
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (47 bp):
TTTGTTGGGGAGACCTTGGATACACAGCCTTCATCACTGCATCGAAA
Found at i:9087942 original size:45 final size:45
Alignment explanation
Indices: 9087877--9088360 Score: 529
Period size: 45 Copynumber: 10.8 Consensus size: 45
9087867 AACAGATTGA
* * * * * *
9087877 TGAAAATAGCAAATCCTATCTTCCTGAGGTTGCAGTGGAGTGGAT
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
* * **
9087922 TGAAGATAGCAAGTCTTATCTCCCTAAAGTTGCAGCGGAGCAGAC
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
* * * * *
9087967 TGAAGATAGCAAATCCTATCTCCTTGAAGTTACAGTGGAGTGGAT
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
* * * **
9088012 TGAAGATAACAAGTTTTATCTCCCTGAAGTTGCAGCGGAGCAGAC
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
* * *
9088057 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGAT
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
** ** **
9088102 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTATAGCAGAGCAGAC
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
* * * *
9088147 TGAAGATAGCAAATCCTATCTCCCTAAAGTTGCAGTGGAGTGGAT
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
* * ** **
9088192 TGAAGATAGCAAGTCTTATCTTCCTGAAGTTACAGCAGAGCAGAC
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
* *
9088237 TGAAGATAGCAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGG-C
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAG-TGGAC
* * * *
9088282 TGAAGATAGCAAATCCTATCTCCCTGAGGTTGCAGTGGAGTGGAT
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
* *
9088327 TGAAGATAGAAAGTCTTATCTCTCTGAAGTTGCA
1 TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCA
9088361 AAGAGCATAT
Statistics
Matches: 353, Mismatches: 84, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
44 2 0.01
45 350 0.99
46 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (45 bp):
TGAAGATAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTGGAC
Found at i:9088035 original size:90 final size:90
Alignment explanation
Indices: 9087877--9088360 Score: 657
Period size: 90 Copynumber: 5.4 Consensus size: 90
9087867 AACAGATTGA
* * *
9087877 TGAAAATAGCAAATCCTATCTTCCTGAGGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
* * *
9087942 TCCCTAAAGTTGCAGCGGAGCAGAC
66 TCCCTGAAGTTACAGCAGAGCAGAC
* * * *
9087967 TGAAGATAGCAAATCCTATCTCCTTGAAGTTACAGTGGAGTGGATTGAAGATAACAAGTTTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
* *
9088032 TCCCTGAAGTTGCAGCGGAGCAGAC
66 TCCCTGAAGTTACAGCAGAGCAGAC
9088057 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
*
9088122 TCCCTGAAGTTATAGCAGAGCAGAC
66 TCCCTGAAGTTACAGCAGAGCAGAC
*
9088147 TGAAGATAGCAAATCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
*
9088212 TTCCTGAAGTTACAGCAGAGCAGAC
66 TCCCTGAAGTTACAGCAGAGCAGAC
* * * * * * *
9088237 TGAAGATAGCAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGG-CTGAAGATAGCAAATCCTAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAG-TGGATTGAAGATAGCAAGTCTTAT
* * ** ** *
9088301 CTCCCTGAGGTTGCAGTGGAGTGGAT
65 CTCCCTGAAGTTACAGCAGAGCAGAC
* *
9088327 TGAAGATAG-AAAGTCTTATCTCTCTGAAGTTGCA
1 TGAAGATAGCAAA-TCCTATCTCCCTGAAGTTGCA
9088361 AAGAGCATAT
Statistics
Matches: 355, Mismatches: 37, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
89 2 0.01
90 351 0.99
91 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (90 bp):
TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
TCCCTGAAGTTACAGCAGAGCAGAC
Found at i:9088151 original size:135 final size:135
Alignment explanation
Indices: 9087877--9088360 Score: 628
Period size: 135 Copynumber: 3.6 Consensus size: 135
9087867 AACAGATTGA
* * * *
9087877 TGAAAATAGCAAATCCTATCTTCCTGAGGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAATCTTATC
* * *
9087942 TCCCTAAAGTTGCAGCGGAGCAGACTGAAGATAGCAAATCCTATCTCCTTGAAGTTACAGTGGAG
66 TCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAGTCTTATCTCCTTGAAGTTACAGTGGAG
** *
9088007 TGGAT
131 CAGAC
* * ** * ** * *
9088012 TGAAGATAACAAGTTTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAATCCTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAATCTTATC
* ** * * * **
9088077 TCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATCTCCCTGAAGTTATAGCAGAG
66 TCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAGTCTTATCTCCTTGAAGTTACAGTGGAG
9088142 CAGAC
131 CAGAC
* *
9088147 TGAAGATAGCAAATCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTGAAGATAGCAAGTCTTATC
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAATCTTATC
* * * *
9088212 TTCCTGAAGTTACAGCAGAGCAGACTGAAGATAGCAAGTCTTATCTCCTTGAAGTTGCAGTGGAG
66 TCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAGTCTTATCTCCTTGAAGTTACAGTGGAG
*
9088277 CAGGC
131 CAGAC
*
9088282 TGAAGATAGCAAATCCTATCTCCCTGAGGTTGCAGTGGAGTGGATTGAAGATAG-AAAGTCTTAT
1 TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAA-TCTTAT
*
9088346 CTCTCTGAAGTTGCA
65 CTCCCTGAAGTTGCA
9088361 AAGAGCATAT
Statistics
Matches: 291, Mismatches: 57, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
134 2 0.01
135 289 0.99
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (135 bp):
TGAAGATAGCAAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGATAGCAAATCTTATC
TCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAGTCTTATCTCCTTGAAGTTACAGTGGAG
CAGAC
Found at i:9088421 original size:22 final size:22
Alignment explanation
Indices: 9088393--9088434 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
9088383 TATTTCCCTG
9088393 AAGTTGCAATGGAGCAGACTAA
1 AAGTTGCAATGGAGCAGACTAA
*
9088415 AAGTTGCAGTGGAGCAGACT
1 AAGTTGCAATGGAGCAGACT
9088435 GAATAAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.31, T:0.19
Consensus pattern (22 bp):
AAGTTGCAATGGAGCAGACTAA
Found at i:9092287 original size:63 final size:62
Alignment explanation
Indices: 9092180--9092363 Score: 190
Period size: 63 Copynumber: 2.9 Consensus size: 62
9092170 TTTTTTGTTC
* * * * * * *
9092180 CAACCCAA-TTTATTTGATACAAGCATCACAGTACGCACACTCATTCCTCGCATCAACACCTT
1 CAACACAAGTTTATTTTACACAAGCACCACAGCACGCACAATCATTCCT-GCATCAACACATT
* * * * * *
9092242 CAGCTCCAGTTTATTTTACACAAGCACCATAGCACACACAATCATTCACTGCATTAACACATT
1 CAACACAAGTTTATTTTACACAAGCACCACAGCACGCACAATCATTC-CTGCATCAACACATT
* * *
9092305 CAACACAAGTTTATTTTACACAAGCACCACAACACGCGCAATCATTCCATGTATCAACA
1 CAACACAAGTTTATTTTACACAAGCACCACAGCACGCACAATCATTCC-TGCATCAACA
9092364 TCTTCTCCAA
Statistics
Matches: 98, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
62 6 0.06
63 90 0.92
64 2 0.02
ACGTcount: A:0.35, C:0.32, G:0.08, T:0.25
Consensus pattern (62 bp):
CAACACAAGTTTATTTTACACAAGCACCACAGCACGCACAATCATTCCTGCATCAACACATT
Found at i:9101416 original size:21 final size:21
Alignment explanation
Indices: 9101390--9101430 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9101380 AGACGAGCAA
* *
9101390 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
9101411 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
9101431 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:9107114 original size:26 final size:26
Alignment explanation
Indices: 9107084--9107135 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
9107074 AATATTAAGA
* *
9107084 TAAATATTATTTATCTTAATGATAAT
1 TAAATAATATTTATATTAATGATAAT
*
9107110 TAAATAATATTTATATTTATGATAAT
1 TAAATAATATTTATATTAATGATAAT
9107136 ACTATTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (26 bp):
TAAATAATATTTATATTAATGATAAT
Found at i:9107155 original size:21 final size:21
Alignment explanation
Indices: 9107112--9107156 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
9107102 ATGATAATTA
** *
9107112 AATAATATTTATATTTATGAT
1 AATAATATTTATACGTATAAT
*
9107133 AATACTATTTATACGTATAAT
1 AATAATATTTATACGTATAAT
9107154 AAT
1 AAT
9107157 TTTATATATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.47
Consensus pattern (21 bp):
AATAATATTTATACGTATAAT
Found at i:9108818 original size:19 final size:20
Alignment explanation
Indices: 9108796--9108871 Score: 57
Period size: 20 Copynumber: 3.7 Consensus size: 20
9108786 ATTAAACTTT
9108796 AAAAAA-TATTAAAAATTAGAAA
1 AAAAAATTA-TAAAAATTAG--A
*
9108818 AAAAAATATATAAAAATT-GT
1 AAAAAAT-TATAAAAATTAGA
* * *
9108838 AAAAAATTGTAAAAATCATA
1 AAAAAATTATAAAAATTAGA
*
9108858 AAAAATTTATAAAA
1 AAAAAATTATAAAA
9108872 TGCATCAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
19 8 0.18
20 19 0.43
22 7 0.16
23 8 0.18
24 2 0.05
ACGTcount: A:0.68, C:0.01, G:0.04, T:0.26
Consensus pattern (20 bp):
AAAAAATTATAAAAATTAGA
Found at i:9108824 original size:22 final size:22
Alignment explanation
Indices: 9108796--9108843 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
9108786 ATTAAACTTT
9108796 AAAAAATAT-TAAAAATTAGAAA
1 AAAAAATATATAAAAATT-GAAA
*
9108818 AAAAAATATATAAAAATTGTAA
1 AAAAAATATATAAAAATTGAAA
9108840 AAAA
1 AAAA
9108844 TTGTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 16 0.67
23 8 0.33
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (22 bp):
AAAAAATATATAAAAATTGAAA
Found at i:9108841 original size:42 final size:40
Alignment explanation
Indices: 9108779--9108862 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 40
9108769 TAAAAGCTAT
* * *
9108779 AAAAATTATTAAACTTTAAAAAATAT-TAAAAATTAGAAAA
1 AAAAATTATAAAAATTTAAAAAAT-TGTAAAAATCAGAAAA
*
9108819 AAAAATATATAAAAATTGTAAAAAATTGTAAAAATCATAAAA
1 AAAAAT-TATAAAAATT-TAAAAAATTGTAAAAATCAGAAAA
9108861 AA
1 AA
9108863 TTTATAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
40 6 0.16
41 9 0.24
42 22 0.59
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (40 bp):
AAAAATTATAAAAATTTAAAAAATTGTAAAAATCAGAAAA
Found at i:9108881 original size:20 final size:19
Alignment explanation
Indices: 9108818--9108882 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
9108808 AAATTAGAAA
* **
9108818 AAAAAATATATAAAAATTGT
1 AAAAAAT-TGTAAAAATCAT
9108838 AAAAAATTGTAAAAATCAT
1 AAAAAATTGTAAAAATCAT
9108857 AAAAAATT-TATAAAATGCAT
1 AAAAAATTGTA-AAAAT-CAT
*
9108877 CAAAAA
1 AAAAAA
9108883 GACCCTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 2 0.05
19 22 0.56
20 15 0.38
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.26
Consensus pattern (19 bp):
AAAAAATTGTAAAAATCAT
Found at i:9109008 original size:15 final size:16
Alignment explanation
Indices: 9108988--9109018 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9108978 ACATGTGGCG
9108988 AAAAAT-CATAAAAAT
1 AAAAATCCATAAAAAT
9109003 AAAAATCCATAAAAAT
1 AAAAATCCATAAAAAT
9109019 TATAGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAATCCATAAAAAT
Found at i:9114179 original size:21 final size:21
Alignment explanation
Indices: 9114153--9114193 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9114143 AGACGAGCAA
* *
9114153 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
9114174 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
9114194 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:9120027 original size:22 final size:22
Alignment explanation
Indices: 9119997--9120039 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
9119987 ACACCAAAAC
*
9119997 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
9120019 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
9120040 AGCGCCGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:9120317 original size:43 final size:43
Alignment explanation
Indices: 9120103--9120498 Score: 289
Period size: 43 Copynumber: 9.2 Consensus size: 43
9120093 TAATGAATGT
* *
9120103 GCCGCTAAAGACCCTGATCTTTAACGGCGCATTTTG--CACAAAC
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGC--TTTGACCAAAAAC
* *** * * ** * *
9120146 GCCGCTGAAGACTAAGACCTTTAGCGGCACTTCCA-CTAAAGC
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAAC
* ** * *
9120188 GCCGCTAAAGACCCTGATCTTTAGCGGCGTTTTTG-GGAGAAGC
1 GCCGCTAAAGACCCTGATCTTTAGCGGCG-CTTTGACCAAAAAC
*** * * ** **
9120231 GCCGCTAAAGACAAGGGTCTTTAACGGCGCTTTCCCCTCAAAC
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAAC
* *
9120274 GCTGC-AATAGACCCTGATCTTTAGCAGCGCTTTGACCAAAAAC
1 GCCGCTAA-AGACCCTGATCTTTAGCGGCGCTTTGACCAAAAAC
* ** * ** *
9120317 GCCACTAAAGACTATGATCTTTAGTGGCGCTTTTTCCACAAAC
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAAC
* * *
9120360 GCCGCTAAAGCCCCTTATCTTTAGCGGCGCTTTGACCAAAAAT
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAAC
* ** * ** *
9120403 GCCACTAAAGACTATGATCTTTAGTGGCGCTTTTTCCACAAAC
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAAC
* *
9120446 GCCGCTAAAGCCCCTTATCTTTAGCGGCGCTTTGACCAAAAAC
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAAC
*
9120489 GCCACTAAAG
1 GCCGCTAAAG
9120499 GCCAACACCT
Statistics
Matches: 261, Mismatches: 86, Indels: 12
0.73 0.24 0.03
Matches are distributed among these distances:
41 2 0.01
42 32 0.12
43 225 0.86
44 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAAC
Found at i:9120511 original size:86 final size:86
Alignment explanation
Indices: 9120103--9120498 Score: 410
Period size: 86 Copynumber: 4.6 Consensus size: 86
9120093 TAATGAATGT
* * * * * * * *
9120103 GCCGCTAAAGACCCTGATCTTTAACGGCGCATTTTG--CACAAACGCCGCTGAAGACTAAGACCT
1 GCCGCTAAAGCCCCTTATCTTTAGCGGCGC--TTTGACCAAAAACGCCACTAAAGACTATGATCT
* *
9120166 TTAGCGGCAC---TTCCACTAAAGC
64 TTAGTGGCGCTTTTTCCAC-AAA-C
* * * ** * * * * * *
9120188 GCCGCTAAAGACCCTGATCTTTAGCGGCGTTTTTG-GGAGAAGCGCCGCTAAAGACAAGGGTCTT
1 GCCGCTAAAGCCCCTTATCTTTAGCGGCG-CTTTGACCAAAAACGCCACTAAAGACTATGATCTT
** ** *
9120252 TAACGGCGCTTTCCCCTCAAAC
65 TAGTGGCGCTTTTTCCACAAAC
* * * *
9120274 GCTGC-AATAGACCCTGATCTTTAGCAGCGCTTTGACCAAAAACGCCACTAAAGACTATGATCTT
1 GCCGCTAA-AGCCCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACTATGATCTT
9120338 TAGTGGCGCTTTTTCCACAAAC
65 TAGTGGCGCTTTTTCCACAAAC
*
9120360 GCCGCTAAAGCCCCTTATCTTTAGCGGCGCTTTGACCAAAAATGCCACTAAAGACTATGATCTTT
1 GCCGCTAAAGCCCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACTATGATCTTT
9120425 AGTGGCGCTTTTTCCACAAAC
66 AGTGGCGCTTTTTCCACAAAC
9120446 GCCGCTAAAGCCCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG
1 GCCGCTAAAGCCCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG
9120499 GCCAACACCT
Statistics
Matches: 266, Mismatches: 37, Indels: 15
0.84 0.12 0.05
Matches are distributed among these distances:
84 4 0.02
85 61 0.23
86 193 0.73
87 5 0.02
88 3 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (86 bp):
GCCGCTAAAGCCCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACTATGATCTTT
AGTGGCGCTTTTTCCACAAAC
Found at i:9120861 original size:21 final size:21
Alignment explanation
Indices: 9120835--9120923 Score: 85
Period size: 21 Copynumber: 4.4 Consensus size: 21
9120825 TTTGACGCTG
9120835 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
9120856 CTCTGCTT-CC-CGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
9120875 CTGTACTTCTCTCGCTGCCG-
1 CTCTGCTTCCCTCGCTGCAGC
* * *
9120895 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
9120916 ATCTGCTT
1 CTCTGCTT
9120924 TAAGCTGCTG
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
19 15 0.26
20 20 0.35
21 22 0.39
ACGTcount: A:0.04, C:0.43, G:0.19, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:9121006 original size:69 final size:70
Alignment explanation
Indices: 9120914--9121043 Score: 203
Period size: 69 Copynumber: 1.9 Consensus size: 70
9120904 TCTTGCTGCC
9120914 GCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGCTG
1 GCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATATCTTT-GTTGAACCTCAGCTTCTCTCGCTG
9120978 CTGTCT
65 CTGTCT
* *
9120984 GCATCTGCTTT-AGTTG-TAGCTGGAGTTCTTCATATCTTTTTTGAACCTCAGCTTCTCTCG
1 GCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATATCTTTGTTGAACCTCAGCTTCTCTCG
9121044 ATGTTGCCTC
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
68 1 0.02
69 40 0.71
70 15 0.27
ACGTcount: A:0.14, C:0.26, G:0.19, T:0.41
Consensus pattern (70 bp):
GCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATATCTTTGTTGAACCTCAGCTTCTCTCGCTGC
TGTCT
Found at i:9121559 original size:30 final size:30
Alignment explanation
Indices: 9121525--9121586 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
9121515 TTCAGGAGTC
9121525 ATAGGGTTTCCATCTTTCTTCCTATGTGTA
1 ATAGGGTTTCCATCTTTCTTCCTATGTGTA
9121555 ATAGGGTTTCCATCTTTCTTCCTATGTGTA
1 ATAGGGTTTCCATCTTTCTTCCTATGTGTA
9121585 AT
1 AT
9121587 GTCAAAAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (30 bp):
ATAGGGTTTCCATCTTTCTTCCTATGTGTA
Found at i:9126503 original size:16 final size:16
Alignment explanation
Indices: 9126482--9126598 Score: 67
Period size: 16 Copynumber: 7.8 Consensus size: 16
9126472 ACTAAGCTAC
9126482 GTAAGTTATGTATTAT
1 GTAAGTTATGTATTAT
*
9126498 GTAAGTTATTTATTAT
1 GTAAGTTATGTATTAT
9126514 G-AA---A---ATTAT
1 GTAAGTTATGTATTAT
*
9126523 GTAAGTTGTGTATTA-
1 GTAAGTTATGTATTAT
* *
9126538 GTCAAATTATG--CTAT
1 GT-AAGTTATGTATTAT
9126553 GTAAGTTATGTATGTCAT
1 GTAAGTTATGTAT-T-AT
* *
9126571 ATAAGTTATGTAAGT-T
1 GTAAGTTATGT-ATTAT
9126587 GTAAGTTATGTA
1 GTAAGTTATGTA
9126599 AGTTATTTAT
Statistics
Matches: 77, Mismatches: 10, Indels: 29
0.66 0.09 0.25
Matches are distributed among these distances:
9 6 0.08
10 2 0.03
12 1 0.01
14 9 0.12
15 7 0.09
16 37 0.48
17 1 0.01
18 13 0.17
19 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.45
Consensus pattern (16 bp):
GTAAGTTATGTATTAT
Found at i:9126544 original size:25 final size:25
Alignment explanation
Indices: 9126493--9126565 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 25
9126483 TAAGTTATGT
*
9126493 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATGTATTATGAAA
* *
9126518 ATTATGTAAGTTGTGTATTAGTCAAA
1 ATTATGTAAGTTATGTATTA-TGAAA
9126544 TTATGCTATGTAAGTTATGTAT
1 --AT--TATGTAAGTTATGTAT
9126566 GTCATATAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
25 18 0.46
26 4 0.10
28 2 0.05
30 15 0.38
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTATGAAA
Found at i:9126562 original size:9 final size:9
Alignment explanation
Indices: 9126550--9126978 Score: 111
Period size: 9 Copynumber: 49.7 Consensus size: 9
9126540 CAAATTATGC
9126550 TATGTAAGT
1 TATGTAAGT
*
9126559 TATGTATGT
1 TATGTAAGT
* *
9126568 CATATAAGT
1 TATGTAAGT
9126577 TATGTAAG-
1 TATGTAAGT
9126585 T-TGTAAGT
1 TATGTAAGT
9126593 TATGTAAGT
1 TATGTAAGT
*
9126602 TAT-TTA-T
1 TATGTAAGT
* *
9126609 TATGAAAAT
1 TATGTAAGT
*
9126618 TAAGTAAGT
1 TATGTAAGT
*
9126627 TATGTAATT
1 TATGTAAGT
*
9126636 TACG-AA-T
1 TATGTAAGT
* **
9126643 AAT-TAAAA
1 TATGTAAGT
*
9126651 AATTGTAAGT
1 TA-TGTAAGT
9126661 TATGTAAG-
1 TATGTAAGT
9126669 T-TGTAAGT
1 TATGTAAGT
9126677 TATGTAAG-
1 TATGTAAGT
9126685 T-TGTAAGT
1 TATGTAAGT
*
9126693 TATGTAATT
1 TATGTAAGT
*
9126702 TATGTATAATAT
1 TATG--TAA-GT
9126714 TAAT-TAA-T
1 T-ATGTAAGT
9126722 TAAT-TAAGT
1 T-ATGTAAGT
*
9126731 TATGTAATT
1 TATGTAAGT
9126740 TATGT-A--
1 TATGTAAGT
*
9126746 TAT-TAACT
1 TATGTAAGT
*
9126754 AAT-TAAGT
1 TATGTAAGT
*
9126762 TATGTAATT
1 TATGTAAGT
9126771 TATG-AA-T
1 TATGTAAGT
* **
9126778 AAT-TAAAAA
1 TATGT-AAGT
*
9126787 AATGTAAGT
1 TATGTAAGT
9126796 TATGTAAG-
1 TATGTAAGT
9126804 T-TGTAAGT
1 TATGTAAGT
*
9126812 TATGTATA-A
1 TATGTA-AGT
9126821 TAT-TAA-T
1 TATGTAAGT
**
9126828 TAACTAAGT
1 TATGTAAGT
*
9126837 TATGTAATT
1 TATGTAAGT
*
9126846 TATGTATCATAT
1 TATGTA--A-GT
9126858 TAATGTAAGT
1 T-ATGTAAGT
**
9126868 TATGTAACA
1 TATGTAAGT
*
9126877 TATGTATA-A
1 TATGTA-AGT
9126886 TAT-TAA-T
1 TATGTAAGT
**
9126893 TAACTAAGT
1 TATGTAAGT
*
9126902 TATGTAATT
1 TATGTAAGT
*
9126911 TATGTATCATAT
1 TATGTA--A-GT
9126923 TAATGTAAGT
1 T-ATGTAAGT
*
9126933 TATGTAACT
1 TATGTAAGT
9126942 TATGT-A--
1 TATGTAAGT
9126948 TAT-TAA-T
1 TATGTAAGT
9126955 TAAT-TAAGT
1 T-ATGTAAGT
*
9126964 TATGTAATT
1 TATGTAAGT
9126973 TATGTA
1 TATGTA
9126979 TAATATTAAT
Statistics
Matches: 321, Mismatches: 52, Indels: 94
0.69 0.11 0.20
Matches are distributed among these distances:
5 2 0.01
6 8 0.02
7 42 0.13
8 56 0.17
9 174 0.54
10 14 0.04
11 7 0.02
12 6 0.02
13 12 0.04
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (9 bp):
TATGTAAGT
Found at i:9126590 original size:34 final size:33
Alignment explanation
Indices: 9126552--9126699 Score: 108
Period size: 34 Copynumber: 4.4 Consensus size: 33
9126542 AATTATGCTA
* * *
9126552 TGTAAGTTATGTATGTCATATAAGTTATGTAAGT
1 TGTAAGTTATGTAAGTCATATAA-TTATGAAAAT
* *
9126586 TGTAAGTTATGTAAGTTAT-TTATTATGAAAAT
1 TGTAAGTTATGTAAGTCATATAATTATGAAAAT
* *
9126618 TAAGTAAGTTATGTAATTTACGA-ATAATTA-AAAAAT
1 T--GTAAGTTATGTAA-GT-C-ATATAATTATGAAAAT
* * *
9126654 TGTAAGTTATGTAAGT--TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGTCATATAA-TTATGAAAAT
9126686 TGTAAGTTATGTAA
1 TGTAAGTTATGTAA
9126700 TTTATGTATA
Statistics
Matches: 91, Mismatches: 14, Indels: 20
0.73 0.11 0.16
Matches are distributed among these distances:
30 3 0.03
31 3 0.03
32 26 0.29
33 3 0.03
34 43 0.47
35 1 0.01
36 6 0.07
37 6 0.07
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.43
Consensus pattern (33 bp):
TGTAAGTTATGTAAGTCATATAATTATGAAAAT
Found at i:9126599 original size:16 final size:16
Alignment explanation
Indices: 9126552--9126699 Score: 104
Period size: 16 Copynumber: 8.9 Consensus size: 16
9126542 AATTATGCTA
*
9126552 TGTAAGTTATGTATGT
1 TGTAAGTTATGTAAGT
*
9126568 CATATAAGTTATGTAAGT
1 --TGTAAGTTATGTAAGT
9126586 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
* * * *
9126602 TATTTA-TTATGAAAAT
1 T-GTAAGTTATGTAAGT
*
9126618 TAAGTAAGTTATGTAATT
1 T--GTAAGTTATGTAAGT
** *
9126636 TACGAATAA-TTA-AAAAAT
1 T--G--TAAGTTATGTAAGT
9126654 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
9126670 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
9126686 TGTAAGTTATGTAA
1 TGTAAGTTATGTAA
9126700 TTTATGTATA
Statistics
Matches: 105, Mismatches: 18, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
14 3 0.03
15 3 0.03
16 59 0.56
17 5 0.05
18 29 0.28
19 3 0.03
20 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.43
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:9126870 original size:22 final size:22
Alignment explanation
Indices: 9126838--9127048 Score: 107
Period size: 22 Copynumber: 10.1 Consensus size: 22
9126828 TAACTAAGTT
9126838 ATGTAATTTATGTATCATATTA
1 ATGTAATTTATGTATCATATTA
* *
9126860 ATGTAAGTTATGTAACATATGT-
1 ATGTAATTTATGTATCATAT-TA
*
9126882 A--TAATATTAAT-TAAC-TAAGTT-
1 ATGTAAT-TT-ATGTATCAT-A-TTA
9126903 ATGTAATTTATGTATCATATTA
1 ATGTAATTTATGTATCATATTA
* * *
9126925 ATGTAAGTTATGTAACTTATGTA
1 ATGTAATTTATGTATCATAT-TA
* *
9126948 TAT-TAATTAAT-TA--A-GTT-
1 -ATGTAATTTATGTATCATATTA
*
9126965 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATCATATTA
* *
9126987 AT-TAATTAAT-TA--A-GTT-
1 ATGTAATTTATGTATCATATTA
*
9127003 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATCATATTA
* *
9127025 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTATGTATCATATTA
9127047 AT
1 AT
9127049 TAACTAAGTT
Statistics
Matches: 147, Mismatches: 18, Indels: 48
0.69 0.08 0.23
Matches are distributed among these distances:
16 4 0.03
17 16 0.11
18 6 0.04
19 1 0.01
20 8 0.05
21 24 0.16
22 72 0.49
23 14 0.10
24 2 0.01
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.47
Consensus pattern (22 bp):
ATGTAATTTATGTATCATATTA
Found at i:9126881 original size:65 final size:64
Alignment explanation
Indices: 9126805--9127422 Score: 466
Period size: 65 Copynumber: 9.8 Consensus size: 64
9126795 TTATGTAAGT
* *
9126805 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATATTAATGTAAGTTA
1 TGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATATTAAT-TAAGTTA
** *
9126870 TGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATATTAATGTAAGTTA
1 TGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATATTAAT-TAAGTTA
* *
9126935 TGTAACTTATG--T-ATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAA-TTAA
1 TGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATATTAATTAAGTT-A
* * * * *
9126996 T-TAAGTTATG--TAAT-TT-ATGTATAAT-ATTAATGTAAGTTATGTATAATATTAATTAACTA
1 TGTAATTTATGTATAATATTAAT-TA-ACTAAGTTATGTAATTTATGTATAATATTAA-T---TA
9127055 AGTTA
60 AGTTA
* * **
9127060 TGTAATTTATGTATCATATTAA-T--GTAAGTTATGTAACATATGTATAATATTAATTAACTAAG
1 TGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATATTAA-T---TAAG
9127122 TTA
62 TTA
* * *
9127125 TGTAATTTATGTATCATATTAATGTAAC----TTATGTAACTTATGTATATTAATTAATTAAGTT
1 TGTAATTTATGTATAATATTAAT-TAACTAAGTTATGTAATTTATGTATAAT-ATTAATTAAGTT
9127186 A
64 A
* * *
9127187 TGTAATTTATGTATAATATTAA-T--GTAAGTTATGT-A--TA---ATAACATAAAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATAT-TAATTAAGTTA
*
9127243 TGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTATGTAT-A-A-T-ATT-A-
1 TGTAATTTATGTAT-A-A-T-ATTAATTAACTAAGTTATGTAATTTATGTATAATATTAATTAAG
9127302 --A
62 TTA
* * *
9127303 TGTAAGTTATGTATAATCTTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAAT
1 TGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATG-----TA-TAA-T-ATTAAT
9127368 TAAGTTA
58 TAAGTTA
*
9127375 TGTAATTTATGTATAATATTAATGT-A-T--GTTATGTAATTTATGAATAAT
1 TGTAATTTATGTATAATATTAAT-TAACTAAGTTATGTAATTTATGTATAAT
9127423 TAAAAAAATG
Statistics
Matches: 466, Mismatches: 32, Indels: 113
0.76 0.05 0.18
Matches are distributed among these distances:
55 2 0.00
56 54 0.12
57 2 0.00
58 2 0.00
59 6 0.01
60 59 0.13
61 14 0.03
62 76 0.16
63 16 0.03
64 11 0.02
65 159 0.34
66 8 0.02
67 7 0.02
68 6 0.01
69 19 0.04
71 1 0.00
72 23 0.05
73 1 0.00
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.47
Consensus pattern (64 bp):
TGTAATTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATAATATTAATTAAGTTA
Found at i:9127015 original size:9 final size:9
Alignment explanation
Indices: 9126836--9127416 Score: 83
Period size: 9 Copynumber: 62.6 Consensus size: 9
9126826 ATTAACTAAG
9126836 TTATGTAAT
1 TTATGTAAT
9126845 TTATGTATCAT
1 TTATGTA--AT
*
9126856 ATTAATGTAAG
1 -TT-ATGTAAT
*
9126867 TTATGTAAC
1 TTATGTAAT
*
9126876 ATATGT-AT
1 TTATGTAAT
*
9126884 AATAT-TAA-
1 -TTATGTAAT
** *
9126892 TTAACTAAG
1 TTATGTAAT
9126901 TTATGTAAT
1 TTATGTAAT
9126910 TTATGTATCAT
1 TTATGTA--AT
*
9126921 ATTAATGTAAG
1 -TT-ATGTAAT
*
9126932 TTATGTAAC
1 TTATGTAAT
9126941 TTATGT-A-
1 TTATGTAAT
9126948 -TAT-TAAT
1 TTATGTAAT
* *
9126955 TAAT-TAAG
1 TTATGTAAT
9126963 TTATGTAAT
1 TTATGTAAT
9126972 TTATGTATAAT
1 TTATG--TAAT
9126983 ATTAAT-TAAT
1 -TT-ATGTAAT
* *
9126993 TAAT-TAAG
1 TTATGTAAT
9127001 TTATGTAAT
1 TTATGTAAT
9127010 TTATGTATAAT
1 TTATG--TAAT
*
9127021 ATTAATGTAAG
1 -TT-ATGTAAT
9127032 TTATGT-AT
1 TTATGTAAT
*
9127040 AATAT-TAA-
1 -TTATGTAAT
** *
9127048 TTAACTAAG
1 TTATGTAAT
9127057 TTATGTAAT
1 TTATGTAAT
9127066 TTATGTATCAT
1 TTATGTA--AT
*
9127077 ATTAATGTAAG
1 -TT-ATGTAAT
*
9127088 TTATGTAAC
1 TTATGTAAT
*
9127097 ATATGT-AT
1 TTATGTAAT
*
9127105 AATAT-TAA-
1 -TTATGTAAT
** *
9127113 TTAACTAAG
1 TTATGTAAT
9127122 TTATGTAAT
1 TTATGTAAT
9127131 TTATGTATCAT
1 TTATGTA--AT
*
9127142 ATTAATGTAAC
1 -TT-ATGTAAT
*
9127153 TTATGTAAC
1 TTATGTAAT
9127162 TTATGT-A-
1 TTATGTAAT
9127169 -TAT-TAAT
1 TTATGTAAT
* *
9127176 TAAT-TAAG
1 TTATGTAAT
9127184 TTATGTAAT
1 TTATGTAAT
9127193 TTATGTATAAT
1 TTATG--TAAT
*
9127204 ATTAATGTAAG
1 -TT-ATGTAAT
*
9127215 TTATGTATAA
1 TTATGTA-AT
* **
9127225 TAACATAA-
1 TTATGTAAT
* *
9127233 -AAT-TAAG
1 TTATGTAAT
9127240 TTATGTAAT
1 TTATGTAAT
9127249 TTATGTATAAT
1 TTATG--TAAT
9127260 ATTAAT-TAAT
1 -TT-ATGTAAT
* *
9127270 TAAT-TAAG
1 TTATGTAAT
9127278 TTATGTAAT
1 TTATGTAAT
9127287 TTATGTATAAT
1 TTATG--TAAT
*
9127298 ATTAATGTAAG
1 -TT-ATGTAAT
9127309 TTATGT-A-
1 TTATGTAAT
* *
9127316 TAATCTTAAT
1 TTAT-GTAAT
* *
9127326 TAAT-TAAG
1 TTATGTAAT
9127334 TTATGTAAT
1 TTATGTAAT
9127343 TTATGTATAAT
1 TTATG--TAAT
9127354 ATTAAT-TAAT
1 -TT-ATGTAAT
* *
9127364 TAAT-TAAG
1 TTATGTAAT
9127372 TTATGTAAT
1 TTATGTAAT
9127381 TTATGTATAAT
1 TTATG--TAAT
9127392 ATTAATGT-AT
1 -TT-ATGTAAT
9127402 GTTATGTAAT
1 -TTATGTAAT
9127412 TTATG
1 TTATG
9127417 AATAATTAAA
Statistics
Matches: 432, Mismatches: 64, Indels: 152
0.67 0.10 0.23
Matches are distributed among these distances:
5 2 0.00
6 11 0.03
7 11 0.03
8 67 0.16
9 190 0.44
10 41 0.09
11 50 0.12
12 22 0.05
13 38 0.09
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (9 bp):
TTATGTAAT
Found at i:9127042 original size:221 final size:222
Alignment explanation
Indices: 9126716--9127510 Score: 866
Period size: 221 Copynumber: 3.5 Consensus size: 222
9126706 TATAATATTA
* * *
9126716 ATTAATTAATTAAGTTATGTAATTTATGTATATTAACTAATTAAGTT-ATGTAATTTATGAATAA
1 ATTAATTAATTAAGTTATGTAATTTATGTATAAT-ATTAATTAA-TTAAT-TAAGTTATG--TAA
* * *
9126780 TTAAAAAAATGTAAGTTATGTAAGTTGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAAT
61 TT---TAAGTATAA-TTAT-TAA--TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAAT
9126845 TTATGTATCATATTAATGTAAGTTATGTAACATATGTATAATATTAATTAACTAAGTTATGTAAT
119 TTATGTATCATATTAATGTAAGTTATGTAACATATGTATAATATTAATTAACTAAGTTATGTAAT
9126910 TTATGTATCATATTAATGTAAGTTATGTAACTTATGTAT
184 TTATGTATCATATTAATGTAAGTTATGTAACTTATGTAT
*
9126949 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTAT
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTAA
9127014 GTATAA-TATTAATGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATA
66 GTATAATTATTAATGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATA
9127078 TTAATGTAAGTTATGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATA
131 TTAATGTAAGTTATGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATA
*
9127143 TTAATGTAACTTATGTAACTTATGTAT
196 TTAATGTAAGTTATGTAACTTATGTAT
9127170 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTT-A-T--G-TA--TAA--T
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAAT-TAA-TTAATTAAGTTATGTAATTT
* * * *
9127226 AACATAAAATTAAGTT-ATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTA
64 AA-GTATAATT-A-TTAATGTAAGTTATGTAT-A-A-T-ATTAATTAACTAAGTTATGTAATTTA
* * * ** *
9127290 TGTATAATATTAATGTAAGTTATGTATA-ATCT-TA-ATTAATTAAGTTATGTAATTTATGT-AT
122 TGTATCATATTAATGTAAGTTATGTA-ACATATGTATAAT-ATTAA-TTAACTAAGTTATGTAAT
* * *
9127351 AATAT-TAATTA-ATTAAT-TAAGTTATGTAATTTATGTAT
184 -TTATGT-ATCATATTAATGTAAGTTATGTAACTTATGTAT
* * * *
9127389 AAT-ATTAATGTATGTTATGTAATTTATGAAT-A-ATTAA--AA-AAATGTAAGTTATGTAAGTT
1 ATTAATTAAT-TAAGTTATGTAATTTATGTATAATATTAATTAATTAAT-TAAGTTATGTAA-TT
*
9127448 GTAAGTTATAAGTTATGTAAGTTGTCAGTTATGTATAATATTAATTAACTAAGTTATGTAATT
63 -TAAG-TATAA-TTAT-TAA--TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATT
9127511 AGAGATGGGT
Statistics
Matches: 495, Mismatches: 32, Indels: 80
0.82 0.05 0.13
Matches are distributed among these distances:
213 1 0.00
214 4 0.01
215 5 0.01
216 4 0.01
217 21 0.04
218 14 0.03
219 44 0.09
220 20 0.04
221 255 0.52
222 5 0.01
223 29 0.06
224 13 0.03
225 4 0.01
226 6 0.01
227 12 0.02
229 5 0.01
231 10 0.02
232 10 0.02
233 33 0.07
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (222 bp):
ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTTAA
GTATAATTATTAATGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATA
TTAATGTAAGTTATGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATA
TTAATGTAAGTTATGTAACTTATGTAT
Found at i:9127057 original size:25 final size:22
Alignment explanation
Indices: 9127010--9127063 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 22
9127000 GTTATGTAAT
*
9127010 TTATGTATAATATTAATGTAAG
1 TTATGTATAATATTAATCTAAG
9127032 TTATGTATAATATTAATTAACTAAG
1 TTATGTATAATATTAA-T--CTAAG
9127057 TTATGTA
1 TTATGTA
9127064 ATTTATGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 16 0.57
23 1 0.04
25 11 0.39
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (22 bp):
TTATGTATAATATTAATCTAAG
Found at i:9127066 original size:94 final size:94
Alignment explanation
Indices: 9126947--9127409 Score: 607
Period size: 94 Copynumber: 5.0 Consensus size: 94
9126937 TAACTTATGT
9126947 ATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTT
1 ATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTT
9127012 ATGTATAATATTAATGTAAGTTATGTATA
66 ATGTATAATATTAATGTAAGTTATGTATA
* * * **
9127041 ATATTAATTAACTAAGTTATGTAATTTATGTAT--CA-T-ATTAA-T--GTAAGTTATGTAACAT
1 ATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTT
*
9127099 ATGTATAATATTAATTAACTAAGTTATG--TA
66 ATGTATAATATTAA-T--GTAAGTTATGTATA
* * *
9127129 AT-TT-ATGT-ATCATA-TTAATGTAACTTATGTA-ACTTATGTATATTAATTAATTAAGTTATG
1 ATATTAAT-TAATTA-AGTT-ATGTAATTTATGTATA-ATAT-TA-ATTAATTAATTAAGTTATG
9127189 TAATTTATGTATAATATTAATGTAAGTTATGTATA
60 TAATTTATGTATAATATTAATGTAAGTTATGTATA
*
9127224 ATA--ACATAAAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAAT
1 ATATTA-AT-TAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAAT
9127287 TTATGTATAATATTAATGTAAGTTATGTATA
64 TTATGTATAATATTAATGTAAGTTATGTATA
*
9127318 ATCTTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTT
1 ATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTT
*
9127383 ATGTATAATATTAATGTATGTTATGTA
66 ATGTATAATATTAATGTAAGTTATGTA
9127410 ATTTATGAAT
Statistics
Matches: 321, Mismatches: 22, Indels: 52
0.81 0.06 0.13
Matches are distributed among these distances:
86 6 0.02
87 44 0.14
88 5 0.02
89 2 0.01
90 14 0.04
91 2 0.01
92 1 0.00
93 14 0.04
94 171 0.53
95 9 0.03
96 47 0.15
97 6 0.02
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.48
Consensus pattern (94 bp):
ATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATTAATTAATTAAGTTATGTAATTT
ATGTATAATATTAATGTAAGTTATGTATA
Found at i:9127091 original size:22 final size:22
Alignment explanation
Indices: 9127059--9127222 Score: 91
Period size: 22 Copynumber: 7.7 Consensus size: 22
9127049 TAACTAAGTT
9127059 ATGTAATTTATGTATCATATTA
1 ATGTAATTTATGTATCATATTA
* *
9127081 ATGTAAGTTATGTAACATATGT-
1 ATGTAATTTATGTATCATAT-TA
*
9127103 A--TAATATTAAT-TAAC-TAAGTT-
1 ATGTAAT-TT-ATGTATCAT-A-TTA
9127124 ATGTAATTTATGTATCATATTA
1 ATGTAATTTATGTATCATATTA
* * *
9127146 ATGTAACTTATGTAACTTATGTA
1 ATGTAATTTATGTATCATAT-TA
* *
9127169 TAT-TAATTAAT-TA--A-GTT-
1 -ATGTAATTTATGTATCATATTA
*
9127186 ATGTAATTTATGTATAATATTA
1 ATGTAATTTATGTATCATATTA
*
9127208 ATGTAAGTTATGTAT
1 ATGTAATTTATGTAT
9127223 AATAACATAA
Statistics
Matches: 110, Mismatches: 14, Indels: 36
0.69 0.09 0.22
Matches are distributed among these distances:
16 2 0.02
17 7 0.06
18 3 0.03
19 1 0.01
20 5 0.05
21 15 0.14
22 61 0.55
23 14 0.13
24 2 0.02
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.47
Consensus pattern (22 bp):
ATGTAATTTATGTATCATATTA
Found at i:9127363 original size:38 final size:38
Alignment explanation
Indices: 9127321--9127397 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
9127311 ATGTATAATC
9127321 TTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
1 TTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
9127359 TTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
1 TTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
9127397 T
1 T
9127398 GTATGTTATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.51
Consensus pattern (38 bp):
TTAATTAATTAAGTTATGTAATTTATGTATAATATTAA
Found at i:9127434 original size:94 final size:93
Alignment explanation
Indices: 9126887--9127443 Score: 568
Period size: 94 Copynumber: 5.9 Consensus size: 93
9126877 TATGTATAAT
* * *
9126887 ATTAATTAACTAAGTTATGTAATTTATGTATCATATTAATGTAAGTTATGTAACTTATGTATATT
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGT-A---AT-T-TATG
*
9126952 AATTAATTAAGTTATGTAATTTATGTATAATATTA
60 AA-TAATTAAGTAATGTAATTTATGTATAATATTA
* *
9126987 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGT-ATAATATTAATTA
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAAT-TTATGAA-TA
* * *
9127051 ACTAAGTTATGTAATTTATGTAT--CA-T-
64 ATTAAGTAATGTAATTTATGTATAATATTA
* ** * *
9127077 ATTAA-T--GTAAGTTATGTAACATATGTATAATATTAATTAACTAAGTTATGTAATTTATGTAT
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAA-T--GTAAGTTATGTAATTTATGAAT
* * * *
9127139 CA-T-ATTAATGTAACTTATGTA-ACTTATGTA
63 AATTAAGTAATGTAATTTATGTATA-ATAT-TA
* *
9127169 TATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGT-A-TAATAACATA
1 -ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGA-AT-
*
9127232 AAATTAAGTTATGTAATTTATGTATAATATTA
63 -AATTAAGTAATGTAATTTATGTATAATATTA
*
9127264 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATCTTA--ATT
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATG--TAAT-TTATGAAT
*
9127327 AATTAAGTTATGTAATTTATGTATAATATTA
63 AATTAAGTAATGTAATTTATGTATAATATTA
*
9127358 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTATGTTATGTAATTTATGAATAAT
1 ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGAATAAT
** *
9127423 TAAAAAAATGTAAGTTATGTA
66 T-AAGTAATGTAATTTATGTA
9127444 AGTTGTAAGT
Statistics
Matches: 391, Mismatches: 38, Indels: 62
0.80 0.08 0.13
Matches are distributed among these distances:
87 42 0.11
88 2 0.01
89 4 0.01
90 19 0.05
91 10 0.03
92 8 0.02
93 21 0.05
94 178 0.46
95 6 0.02
96 47 0.12
97 3 0.01
99 2 0.01
100 49 0.13
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.47
Consensus pattern (93 bp):
ATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTAATTTATGAATAAT
TAAGTAATGTAATTTATGTATAATATTA
Found at i:9127452 original size:16 final size:16
Alignment explanation
Indices: 9127430--9127482 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
9127420 AATTAAAAAA
9127430 ATGTAAGTTATGTAAG-T
1 ATGTAAG-T-TGTAAGTT
*
9127447 -TGTAAGTTATAAGTT
1 ATGTAAGTTGTAAGTT
*
9127462 ATGTAAGTTGTCAGTT
1 ATGTAAGTTGTAAGTT
9127478 ATGTA
1 ATGTA
9127483 TAATATTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 5 0.16
15 2 0.06
16 24 0.77
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (16 bp):
ATGTAAGTTGTAAGTT
Found at i:9127460 original size:23 final size:23
Alignment explanation
Indices: 9127433--9127479 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
9127423 TAAAAAAATG
9127433 TAAGTTATGTAAGTTGTAAGTTA
1 TAAGTTATGTAAGTTGTAAGTTA
*
9127456 TAAGTTATGTAAGTTGTCAGTTA
1 TAAGTTATGTAAGTTGTAAGTTA
9127479 T
1 T
9127480 GTATAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (23 bp):
TAAGTTATGTAAGTTGTAAGTTA
Found at i:9130472 original size:37 final size:38
Alignment explanation
Indices: 9130431--9130502 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 38
9130421 CATAACCCCC
* *
9130431 TAACCCTTTACCCCTAAAT-CCCCTAACCCCTAAAGCA
1 TAACCCTTAAACCCTAAATCCCCCTAACCCCTAAAGCA
9130468 TAACCCTTAAACCCTAAATCCCCCTAACCCCTAAA
1 TAACCCTTAAACCCTAAATCCCCCTAACCCCTAAA
9130503 CATCAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 17 0.53
38 15 0.47
ACGTcount: A:0.35, C:0.43, G:0.01, T:0.21
Consensus pattern (38 bp):
TAACCCTTAAACCCTAAATCCCCCTAACCCCTAAAGCA
Found at i:9132395 original size:41 final size:41
Alignment explanation
Indices: 9132331--9132650 Score: 237
Period size: 41 Copynumber: 7.8 Consensus size: 41
9132321 TTTTGTTACT
* * *
9132331 ATTAGCGGCGCTTCGGTAAAAACGCCGCTAAAGGTCAATAC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGATCAATAC
* * * *
9132372 ATTAGCGGCGCTTAGATACAAACGCCGCTGAAGA-CAAGAGA
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGATCAATA-C
* * * *
9132413 ATTAGTGGCGCTCAGTTAAAAACGCCGCTAAAGATCCGAGT--
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGAT-C-AATAC
*
9132454 ATTAGCGGCGCTT-GTATAAAAACGCCGCTAAAGATCCAA-GC
1 ATTAGCGGCGCTTAG-ATAAAAACGCCGCTAAAGAT-CAATAC
* *
9132495 ATTAGCGGCGCATAGACAAAAACGCCGCTAAAGATC--TGAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGATCAAT-A-C
* * ** * * *
9132536 ATTAGCGGCGCCTACACGAAAACTCCGCTAAAGACTCGA-GC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGA-TCAATAC
* * *
9132577 ATTAGCGGCGCCTAGACAAAAATGCCGCTAAAGATC--TGAGC
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGATCAAT-A-C
* * *
9132618 ATTAGCGGCCCTTACACAAAAACGCCGCTAAAG
1 ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAG
9132651 GTTTAAAAAA
Statistics
Matches: 227, Mismatches: 35, Indels: 34
0.77 0.12 0.11
Matches are distributed among these distances:
40 9 0.04
41 213 0.94
42 3 0.01
43 1 0.00
44 1 0.00
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.17
Consensus pattern (41 bp):
ATTAGCGGCGCTTAGATAAAAACGCCGCTAAAGATCAATAC
Found at i:9132477 original size:82 final size:82
Alignment explanation
Indices: 9132331--9132650 Score: 317
Period size: 82 Copynumber: 3.9 Consensus size: 82
9132321 TTTTGTTACT
** * * * * * *
9132331 ATTAGCGGCGCTTC-GGTAAAAACGCCGCTAAAGGT-CAATACATTAGCGGCGCTTAGATACAAA
1 ATTAGCGGCGC-TCAGACAAAAACGCCGCTAAAGATCCGA-GCATTAGCGGCGCTTACACAAAAA
* *
9132394 CGCCGCTGAAGACAAGAGA
64 CGCCGCTAAAGACAAGAGC
* ** * ** *
9132413 ATTAGTGGCGCTCAGTTAAAAACGCCGCTAAAGATCCGAGTATTAGCGGCGCTTGTATAAAAACG
1 ATTAGCGGCGCTCAGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAACG
*
9132478 CCGCTAAAGATCCA-AGC
66 CCGCTAAAGA-CAAGAGC
* * *
9132495 ATTAGCGGCGCAT-AGACAAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCCTACACGAAAAC
1 ATTAGCGGCGC-TCAGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAAC
* **
9132559 TCCGCTAAAGACTCGAGC
65 GCCGCTAAAGACAAGAGC
* * *
9132577 ATTAGCGGCGC-CTAGACAAAAATGCCGCTAAAGATCTGAGCATTAGCGGCCCTTACACAAAAAC
1 ATTAGCGGCGCTC-AGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAAC
9132641 GCCGCTAAAG
65 GCCGCTAAAG
9132651 GTTTAAAAAA
Statistics
Matches: 201, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
81 3 0.01
82 193 0.96
83 5 0.02
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.17
Consensus pattern (82 bp):
ATTAGCGGCGCTCAGACAAAAACGCCGCTAAAGATCCGAGCATTAGCGGCGCTTACACAAAAACG
CCGCTAAAGACAAGAGC
Found at i:9132558 original size:123 final size:120
Alignment explanation
Indices: 9132330--9132650 Score: 344
Period size: 123 Copynumber: 2.6 Consensus size: 120
9132320 TTTTTGTTAC
* * * * *
9132330 TATTAGCGGCGCTTCGGTAAAAACGCCGCTAAAGGT-CAATACATTAGCGGCGCTTAGATACAAA
1 TATTAGCGGCGCTT-GATAAAAACGCCGCTAAAGATCCAA-GCATTAGCGGCGCTTAGACAAAAA
* *
9132394 CGCCGCTGAAGACAAGAGAATTAGTGGCGCTCAGTTAAAAACGCCGCTAAAGA-TCCGAG
64 CGCCGCTAAAGACAAGAGAATTAGCGGCGCTCAG-T-AAAACGCCGCTAAAGACT-CGAG
*
9132453 TATTAGCGGCGCTTGTATAAAAACGCCGCTAAAGATCCAAGCATTAGCGGCGCATAGACAAAAAC
1 TATTAGCGGCGCTTG-ATAAAAACGCCGCTAAAGATCCAAGCATTAGCGGCGCTTAGACAAAAAC
* * *
9132518 GCCGCTAAAGATC-TGAGCATTAGCGGCGCCTACACG-AAAACTCCGCTAAAGACTCGAG
65 GCCGCTAAAGA-CAAGAGAATTAGCGGCG-CT-CA-GTAAAACGCCGCTAAAGACTCGAG
* * * * ** * *
9132576 CATTAGCGGCGCCTAGACAAAAATGCCGCTAAAGATCTGAGCATTAGCGGCCCTTACACAAAAAC
1 TATTAGCGGCG-CTTGATAAAAACGCCGCTAAAGATCCAAGCATTAGCGGCGCTTAGACAAAAAC
9132641 GCCGCTAAAG
65 GCCGCTAAAG
9132651 GTTTAAAAAA
Statistics
Matches: 170, Mismatches: 20, Indels: 16
0.83 0.10 0.08
Matches are distributed among these distances:
122 1 0.01
123 156 0.92
124 10 0.06
125 2 0.01
126 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.17
Consensus pattern (120 bp):
TATTAGCGGCGCTTGATAAAAACGCCGCTAAAGATCCAAGCATTAGCGGCGCTTAGACAAAAACG
CCGCTAAAGACAAGAGAATTAGCGGCGCTCAGTAAAACGCCGCTAAAGACTCGAG
Found at i:9133084 original size:15 final size:14
Alignment explanation
Indices: 9133057--9133087 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
9133047 AACTTATTTC
9133057 ATAATAATAATATA
1 ATAATAATAATATA
9133071 ATAATAATTAATATA
1 ATAATAA-TAATATA
9133086 AT
1 AT
9133088 TTATTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATAATAATAATATA
Found at i:9135545 original size:15 final size:16
Alignment explanation
Indices: 9135527--9135564 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
9135517 AAAGTATGTC
9135527 GAAC-TCTATTATGAG
1 GAACATCTATTATGAG
9135542 GAACAGTTCTATTATGAG
1 GAACA--TCTATTATGAG
9135560 GAACA
1 GAACA
9135565 GTTGCTCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 4 0.20
18 16 0.80
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (16 bp):
GAACATCTATTATGAG
Found at i:9135554 original size:18 final size:18
Alignment explanation
Indices: 9135531--9135567 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
9135521 TATGTCGAAC
9135531 TCTATTATGAGGAACAGT
1 TCTATTATGAGGAACAGT
9135549 TCTATTATGAGGAACAGT
1 TCTATTATGAGGAACAGT
9135567 T
1 T
9135568 GCTCCTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (18 bp):
TCTATTATGAGGAACAGT
Found at i:9141393 original size:19 final size:19
Alignment explanation
Indices: 9141369--9141405 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9141359 GTACTTTCAT
**
9141369 CAAATTAATCAAAAAAACC
1 CAAATTAAAAAAAAAAACC
9141388 CAAATTAAAAAAAAAAAC
1 CAAATTAAAAAAAAAAAC
9141406 AAATACCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.16, G:0.00, T:0.14
Consensus pattern (19 bp):
CAAATTAAAAAAAAAAACC
Found at i:9145015 original size:3 final size:3
Alignment explanation
Indices: 9145007--9145042 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
9144997 ATTTAACCAA
9145007 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9145043 GTACTAAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:9145780 original size:24 final size:25
Alignment explanation
Indices: 9145742--9145789 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
9145732 TTTTTACTTT
* *
9145742 TGAAAAAATTATTAATAATTTTAGA
1 TGAAAAAAATATTAAGAATTTTAGA
9145767 TGAAAAAAAT-TTAAGAATTTTAG
1 TGAAAAAAATATTAAGAATTTTAG
9145790 TTTATTGGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (25 bp):
TGAAAAAAATATTAAGAATTTTAGA
Found at i:9145914 original size:15 final size:15
Alignment explanation
Indices: 9145896--9145929 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9145886 TTGTATATAT
*
9145896 AAAATTTATTTATTA
1 AAAAGTTATTTATTA
*
9145911 AAAAGTTATTTTTTA
1 AAAAGTTATTTATTA
9145926 AAAA
1 AAAA
9145930 AATTGACATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
AAAAGTTATTTATTA
Found at i:9152619 original size:29 final size:29
Alignment explanation
Indices: 9152577--9152632 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
9152567 GTCTTAAAGG
* * *
9152577 GGTGGAGGAGATGTGTTAGGCGACACTCA
1 GGTGGACGAGATGTGTCAAGCGACACTCA
9152606 GGTGGACGAGATGTGTCAAGCGACACT
1 GGTGGACGAGATGTGTCAAGCGACACT
9152633 GGGCCCTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.39, T:0.20
Consensus pattern (29 bp):
GGTGGACGAGATGTGTCAAGCGACACTCA
Found at i:9157647 original size:20 final size:20
Alignment explanation
Indices: 9157622--9157661 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9157612 CGTAAAATGA
*
9157622 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
9157642 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
9157662 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:9157651 original size:34 final size:35
Alignment explanation
Indices: 9157607--9157673 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
9157597 CAATAAAATA
*
9157607 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
9157641 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
9157674 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:9157677 original size:14 final size:15
Alignment explanation
Indices: 9157601--9157677 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
9157591 GATTGCCAAT
* *
9157601 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
9157615 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
9157629 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
9157649 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
9157664 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
9157678 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:9172427 original size:6 final size:6
Alignment explanation
Indices: 9172416--9172455 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
9172406 AAAGGACATA
*
9172416 TATATC TATATC TATATC TATATC TATATC TATATA TATA
1 TATATC TATATC TATATC TATATC TATATC TATATC TATA
9172456 AATTCTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (6 bp):
TATATC
Found at i:9187563 original size:37 final size:37
Alignment explanation
Indices: 9187502--9187647 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
9187492 TACGTATGAT
* *
9187502 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
9187537 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
9187574 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
**
9187611 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
9187648 TAAAGCTATC
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 91 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:9187662 original size:46 final size:46
Alignment explanation
Indices: 9187611--9187833 Score: 284
Period size: 52 Copynumber: 4.6 Consensus size: 46
9187601 TAAGTGTAGC
**
9187611 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
9187657 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
9187703 CACTTATCACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
9187755 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
9187807 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
9187834 AGTACTCAAA
Statistics
Matches: 161, Mismatches: 9, Indels: 14
0.88 0.05 0.08
Matches are distributed among these distances:
46 68 0.42
49 1 0.01
50 1 0.01
51 3 0.02
52 88 0.55
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:9187712 original size:7 final size:7
Alignment explanation
Indices: 9187700--9187733 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
9187690 TAGCCGAAGC
9187700 TATCACT
1 TATCACT
9187707 TATCACT
1 TATCACT
*
9187714 TTTCACT
1 TATCACT
9187721 TATCACT
1 TATCACT
9187728 TGATCA
1 T-ATCA
9187734 GATAAGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.44
Consensus pattern (7 bp):
TATCACT
Found at i:9191013 original size:49 final size:49
Alignment explanation
Indices: 9190958--9191152 Score: 309
Period size: 49 Copynumber: 4.0 Consensus size: 49
9190948 TTCGTTTTCT
* * *
9190958 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* * *
9191007 CGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* *
9191056 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
9191105 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACA-AATCACAT
9191153 GTTCACATGT
Statistics
Matches: 137, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 131 0.96
50 6 0.04
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
Found at i:9192466 original size:37 final size:37
Alignment explanation
Indices: 9192405--9192550 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
9192395 TACGTATGAT
* *
9192405 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
9192440 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
9192477 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
**
9192514 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
9192551 TAAAGCTATC
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 91 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:9192565 original size:46 final size:46
Alignment explanation
Indices: 9192514--9192736 Score: 266
Period size: 52 Copynumber: 4.6 Consensus size: 46
9192504 TAAGTGTAGC
*
9192514 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* * *
9192560 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* *
9192606 CACTTATCACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
9192658 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
9192710 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
9192737 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
46 67 0.42
49 1 0.01
50 1 0.01
51 3 0.02
52 87 0.55
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
Found at i:9192615 original size:7 final size:7
Alignment explanation
Indices: 9192603--9192636 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
9192593 TAGCCGAAGC
9192603 TATCACT
1 TATCACT
9192610 TATCACT
1 TATCACT
*
9192617 TTTCACT
1 TATCACT
9192624 TATCACT
1 TATCACT
9192631 TGATCA
1 T-ATCA
9192637 GATAAGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.44
Consensus pattern (7 bp):
TATCACT
Found at i:9192702 original size:98 final size:98
Alignment explanation
Indices: 9192514--9192736 Score: 260
Period size: 98 Copynumber: 2.3 Consensus size: 98
9192504 TAAGTGTAGC
* * * *
9192514 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCACT
*
9192579 TGATCAGATAAGTATAGCCGAAGCTATCA-CTTAT
66 TGATCAGATAAGTATAGCCGAAGCTA-AAGC-TAT
* *
9192613 CACTTTTCAC-TTATCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT-CCACT
1 CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCACT
* * *
9192676 TG-TCACTTGATCAG-ATAAG-TGTAGCTAAAGCTAT
66 TGATCA---GATAAGTAT-AGCCGAAGCTAAAGCTAT
9192710 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTATCACTTGATCAGA
9192737 AGTACTCAAA
Statistics
Matches: 107, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
96 3 0.03
97 18 0.17
98 70 0.65
99 16 0.15
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTATCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCACT
TGATCAGATAAGTATAGCCGAAGCTAAAGCTAT
Found at i:9195528 original size:88 final size:86
Alignment explanation
Indices: 9195391--9195610 Score: 223
Period size: 88 Copynumber: 2.5 Consensus size: 86
9195381 CCACTTCCTA
* * * * * *
9195391 CCAATATAGGAAGACAGGACCTACTATCTTCGATCTACTT-C-ACGTCAATACATGAAGACAAGA
1 CCAATACAGGAAGACAAGATCTGC-ATCTTCGATCCACTTCCTAC--CAATACAAGAAGACAAGA
*
9195454 TCTGCTTTCTTCGATTTACTTC-G
63 TCTGCTTTCTTCGATCTACTTCAG
** * * *
9195477 CCACCAGTATGGGAAGACAAGATCTGCA-CATTTGATCCACTTCCTACCAATATAAGAAGACATG
1 CCA--A-TACAGGAAGACAAGATCTGCATC-TTCGATCCACTTCCTACCAATACAAGAAGACAAG
9195541 ATCTGCTTTCTTCGATCTACTTCATG
62 ATCTGCTTTCTTCGATCTACTTCA-G
*
9195567 CCAATACATGAAGACAAGATCTGCATCTTCGATCCACTTCCTAC
1 CCAATACAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTAC
9195611 TAAAAAAAAG
Statistics
Matches: 111, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
86 3 0.03
87 35 0.32
88 50 0.45
89 17 0.15
90 6 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (86 bp):
CCAATACAGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATACAAGAAGACAAGATCT
GCTTTCTTCGATCTACTTCAG
Found at i:9195580 original size:44 final size:44
Alignment explanation
Indices: 9195375--9195606 Score: 186
Period size: 44 Copynumber: 5.3 Consensus size: 44
9195365 GGATCTATTT
* * * * *
9195375 TTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTACTATC
1 TTCGATCCACTTCATGCCAATATAGGAAGACAAGATCTGCTATC
* * * * * *
9195419 TTCGATCTACTTCACGTCAATACATGAAGACAAGATCTGCTTTC
1 TTCGATCCACTTCATGCCAATATAGGAAGACAAGATCTGCTATC
** *
9195463 TTCGATTTACTTC--GCCACCAGTATGGGAAGACAAGATCTGC-A-C
1 TTCGATCCACTTCATGCCA--A-TATAGGAAGACAAGATCTGCTATC
* * * * * *
9195506 ATTTGATCCACTTCCTACCAATATAAGAAGACATGATCTGCTTTC
1 -TTCGATCCACTTCATGCCAATATAGGAAGACAAGATCTGCTATC
* * *
9195551 TTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGC-ATC
1 TTCGATCCACTTCATGCCAATATAGGAAGACAAGATCTGCTATC
9195594 TTCGATCCACTTC
1 TTCGATCCACTTC
9195607 CTACTAAAAA
Statistics
Matches: 146, Mismatches: 34, Indels: 17
0.74 0.17 0.09
Matches are distributed among these distances:
42 3 0.02
43 32 0.22
44 90 0.62
45 18 0.12
46 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (44 bp):
TTCGATCCACTTCATGCCAATATAGGAAGACAAGATCTGCTATC
Found at i:9202691 original size:29 final size:29
Alignment explanation
Indices: 9202621--9202696 Score: 95
Period size: 29 Copynumber: 2.6 Consensus size: 29
9202611 TAAAATATTA
*
9202621 TTTT-CTAATTTTTAATGGGCCTAAATTTT
1 TTTTACTAATTTTTAA-GGGCCCAAATTTT
9202650 TTTTA-TCAATTTTTAAGGGCCCAAA-TTT
1 TTTTACT-AATTTTTAAGGGCCCAAATTTT
9202678 TTTTACTAACTTTTTAAGG
1 TTTTACTAA-TTTTTAAGG
9202697 AACCTAAAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
28 10 0.24
29 23 0.55
30 9 0.21
ACGTcount: A:0.26, C:0.12, G:0.11, T:0.51
Consensus pattern (29 bp):
TTTTACTAATTTTTAAGGGCCCAAATTTT
Found at i:9217642 original size:7 final size:7
Alignment explanation
Indices: 9217630--9217696 Score: 53
Period size: 7 Copynumber: 8.7 Consensus size: 7
9217620 AACTTAAGTT
9217630 TATTTAA
1 TATTTAA
9217637 TATTTAA
1 TATTTAA
*
9217644 TGATTTTA
1 T-ATTTAA
*
9217652 TATTTAT
1 TATTTAA
9217659 TATTTATTA
1 TATTTA--A
*
9217668 TAATTTTA
1 T-ATTTAA
9217676 TATTTAA
1 TATTTAA
9217683 TCATTTTAA
1 T-A-TTTAA
9217692 TATTT
1 TATTT
9217697 GCTTATAGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
7 27 0.56
8 10 0.21
9 7 0.15
10 4 0.08
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (7 bp):
TATTTAA
Found at i:9217678 original size:24 final size:22
Alignment explanation
Indices: 9217630--9217693 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 22
9217620 AACTTAAGTT
*
9217630 TATTTAATATTTAATGATTTTA
1 TATTTAATATTTAATAATTTTA
*
9217652 TATTTATTATTTATTATAATTTTA
1 TATTTAATATTTA--ATAATTTTA
9217676 TATTTAATCATTTTAATA
1 TATTTAAT-A-TTTAATA
9217694 TTTGCTTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
22 12 0.34
24 18 0.51
25 1 0.03
26 4 0.11
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
TATTTAATATTTAATAATTTTA
Found at i:9223656 original size:22 final size:20
Alignment explanation
Indices: 9223620--9223678 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
9223610 GGCCCAGCCC
9223620 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
9223642 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
**
9223663 AAGTATTTTAAAAATA
1 ATTTATTTTAAAAATA
9223679 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 7 0.21
23 8 0.24
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:9223680 original size:11 final size:11
Alignment explanation
Indices: 9223660--9223726 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 11
9223650 TAAAAATTAA
9223660 AAAAAGTATTTT
1 AAAAA-TATTTT
9223672 AAAAATATTTT
1 AAAAATATTTT
*
9223683 --AAA-A-TTA
1 AAAAATATTTT
* *
9223690 AAAAATA-ATA
1 AAAAATATTTT
9223700 AAAAAGTATTTT
1 AAAAA-TATTTT
9223712 AAAAATATTTT
1 AAAAATATTTT
9223723 AAAA
1 AAAA
9223727 TTAAAAAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
7 2 0.04
8 1 0.02
9 6 0.13
10 8 0.17
11 18 0.39
12 11 0.24
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:9223744 original size:40 final size:39
Alignment explanation
Indices: 9223651--9223744 Score: 161
Period size: 40 Copynumber: 2.4 Consensus size: 39
9223641 AATTTATTTT
9223651 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTA
1 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTA
*
9223690 AAAAATAATAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTA-AAAAAAGTATTTTAAAAATATTTTAAAATT-A
9223731 AAAAATTAAAAAAA
1 AAAAATTAAAAAAA
9223745 TAAATATATT
Statistics
Matches: 51, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
39 7 0.14
40 36 0.71
41 8 0.16
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (39 bp):
AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTA
Found at i:9225451 original size:66 final size:66
Alignment explanation
Indices: 9225356--9225488 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
9225346 TTATTTCCTG
9225356 TTTTGTTGTAAAAAAATAATAAAAGAGAACAGAAAAATAGGATCTTGAAGGGCCTTTTATTTTTT
1 TTTTGTTGTAAAAAAATAATAAAAGAGAACAGAAAAATAGGATCTTGAAGGGCCTTTTATTTTTT
9225421 T
66 T
9225422 TTTTGTTGTAAAAAAATAATAAAAGAGAACAGAAAAATAGGATCTTGAAGGGCCTTTTATTTTTT
1 TTTTGTTGTAAAAAAATAATAAAAGAGAACAGAAAAATAGGATCTTGAAGGGCCTTTTATTTTTT
9225487 T
66 T
9225488 T
1 T
9225489 CTTTCTTTCG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.41, C:0.06, G:0.17, T:0.37
Consensus pattern (66 bp):
TTTTGTTGTAAAAAAATAATAAAAGAGAACAGAAAAATAGGATCTTGAAGGGCCTTTTATTTTTT
T
Found at i:9226144 original size:3 final size:3
Alignment explanation
Indices: 9226138--9226189 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
9226128 TTAGTTTTTG
* * *
9226138 TTA TTA TTA TTA TTA CTA TTA TCA TTA TTA -TA TTA TATA GTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
9226183 TAA TTA T
1 TTA TTA T
9226190 ACTTACATAT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.90
4 2 0.05
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:9226181 original size:24 final size:24
Alignment explanation
Indices: 9226138--9226189 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
9226128 TTAGTTTTTG
*
9226138 TTATTATTATTATTACTATTATCA
1 TTATTATTATTATTACTATTATAA
*
9226162 TTATTA-TATTATATAGTATTATAA
1 TTATTATTATTAT-TACTATTATAA
9226186 TTAT
1 TTAT
9226190 ACTTACATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (24 bp):
TTATTATTATTATTACTATTATAA
Found at i:9228183 original size:13 final size:13
Alignment explanation
Indices: 9228165--9228190 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9228155 AAAGAGATTT
9228165 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
9228178 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
9228191 AAATTGAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTAGTAAA
Found at i:9231112 original size:7 final size:7
Alignment explanation
Indices: 9231090--9231159 Score: 88
Period size: 7 Copynumber: 9.7 Consensus size: 7
9231080 TGAGTCATTA
9231090 AAAAATG
1 AAAAATG
*
9231097 ATGAAATG
1 A-AAAATG
9231105 AAAAATG
1 AAAAATG
9231112 AAAAAGTG
1 AAAAA-TG
*
9231120 -AAAAGG
1 AAAAATG
9231126 AAAAATG
1 AAAAATG
9231133 AAAAATG
1 AAAAATG
9231140 AAAAATG
1 AAAAATG
9231147 AAAAATGG
1 AAAAAT-G
9231155 AAAAA
1 AAAAA
9231160 GTAAAATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
6 1 0.02
7 40 0.73
8 14 0.25
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.13
Consensus pattern (7 bp):
AAAAATG
Found at i:9231166 original size:21 final size:20
Alignment explanation
Indices: 9231100--9231166 Score: 89
Period size: 21 Copynumber: 3.2 Consensus size: 20
9231090 AAAAATGATG
9231100 AAATGAAAAATGAAAAAGTGA
1 AAATGAAAAATGAAAAAGT-A
* *
9231121 AAAGGAAAAATGAAAAATGAA
1 AAATGAAAAATGAAAAA-GTA
9231142 AAATGAAAAATGGAAAAAGTA
1 AAATGAAAAAT-GAAAAAGTA
9231163 AAAT
1 AAAT
9231167 AGAGAGGCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
21 33 0.82
22 7 0.17
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (20 bp):
AAATGAAAAATGAAAAAGTA
Found at i:9232597 original size:132 final size:132
Alignment explanation
Indices: 9232360--9233008 Score: 994
Period size: 132 Copynumber: 4.9 Consensus size: 132
9232350 CTGCATAGAC
* * * * *
9232360 AGTGGGGCAGATCAAAGATGGCGGATTTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGTCA
1 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
9232425 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
*
9232490 AT
131 GT
*
9232492 AGTGGGGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
9232557 GTAATTCTACTTCCTTGGGCAGCAGTGAAATGGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
9232622 GT
131 GT
* * *
9232624 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCCGTGGTTACAGTAGAGTACATTGAAGCGA
1 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
9232689 GTAATTCTACTTCCCTAGGAAGCAATGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
9232754 GT
131 GT
* * *
9232756 AGTGGAGCAGATCAAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAAGCTA
1 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
9232821 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTTAGATCTTGTGTCCCTAAGTA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
9232886 GT
131 GT
* * *
9232888 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGCGGAGTACATTAAAACCA
1 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * * * **
9232953 ATAATTGTA-TCTCCCTAGGCAGTAGTGGAATAGATTAAAGATAACAGATCTTGTCT
66 GTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCT
9233009 TCCCATACTG
Statistics
Matches: 472, Mismatches: 44, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
131 1 0.00
132 471 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (132 bp):
AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
GT
Found at i:9233229 original size:44 final size:44
Alignment explanation
Indices: 9233181--9233391 Score: 147
Period size: 44 Copynumber: 4.8 Consensus size: 44
9233171 CCAGTAATTC
* *
9233181 TATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATAACAAATCA
1 TATCTCCCTGGGCAGTAGTGGAGTAGATCAAAGATAACAAATCA
** * * * **
9233225 TATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGACAGATTT
1 TATCTCCCTGGGCAGTAGTGGAGTAGATCAAAGATAACAAATCA
* * ** * * * ** ** *
9233269 TACCTCCTTATGGTTA-CAGTGGAGTACATTAAAGCCAGTAATTC-
1 TATCTCC--CTGGGCAGTAGTGGAGTAGATCAAAGATAACAAATCA
* ** *
9233313 TATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTACAAATCA
1 TATCTCCCTGGGCAGTAGTGGAGTAGATCAAAGATAACAAATCA
* *
9233357 TATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGAT
1 TATCTCCCTGGGCAGTAGTGGAGTAGATCAAAGAT
9233392 GGCAGATTTT
Statistics
Matches: 119, Mismatches: 44, Indels: 8
0.70 0.26 0.05
Matches are distributed among these distances:
42 4 0.03
43 18 0.15
44 79 0.66
45 16 0.13
46 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGGGCAGTAGTGGAGTAGATCAAAGATAACAAATCA
Found at i:9233309 original size:132 final size:131
Alignment explanation
Indices: 9233072--9233451 Score: 539
Period size: 132 Copynumber: 2.9 Consensus size: 131
9233062 TGGCATGAAG
* ** * * **
9233072 TAGATCAAAGATAACAGATTTTATTTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGTGAATTT
1 TAGATCAAAGATAACAAATCATATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCAG-ATTT
* *
9233137 TACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
65 TACCTCCTTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
9233202 AA
130 AA
*
9233204 TAGATCAAAGATAACAAATCATATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGACAGATTT
1 TAGATCAAAGATAACAAATCATATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG-CAGATTT
* *
9233269 TACCTCCTTATGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCTGGGCAGTAGTGG
65 TACCTCCTTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGG
9233334 AA
130 AA
** * * *
9233336 TAGATTGAAGATTACAAATCATATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTT
1 TAGATCAAAGATAACAAATCATATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAT-GCAGATTT
*
9233401 TACCTCCCTGA-GGTTACAGTGGAGTACATTGAAGCCAGT-ATTCCTATCTCC
65 TACCT-CCTTATGGTTACAGTGGAGTACATTGAAGCCAGTAATT-CTATCTCC
9233452 TTGAAGTTGC
Statistics
Matches: 224, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
131 3 0.01
132 215 0.96
133 6 0.03
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (131 bp):
TAGATCAAAGATAACAAATCATATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCAGATTTT
ACCTCCTTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGA
A
Found at i:9233493 original size:132 final size:129
Alignment explanation
Indices: 9233097--9233499 Score: 393
Period size: 132 Copynumber: 3.1 Consensus size: 129
9233087 AGATTTTATT
* * *
9233097 TCCCTAAGCAATAGTGGAGCAGATCGAAGATGG-TGAATTTTACCTCCCTGTGGTTACAGTGGAG
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAG-ATTTTACCTCCCTGAGGTTACAGTGGAG
* * ** * * * *
9233161 TACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATCAAAGATAACAA-ATCA
65 TACATTGAAGCCAGTAATTCTATCTCCTTGAGTTGCAATAGAATGGAT--TA-A-AACAAGATCA
9233225 TATC
126 TATC
* * *
9233229 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGACAGATTTTACCT-CCTTATGGTTACAGTGGAG
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGA-GGTTACAGTGGAG
* * * ** * * * *
9233293 TACATTAAAGCCAGTAATTCTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTACAA-ATCA
65 TACATTGAAGCCAGTAATTCTATCTCCTTGAGTTGCAATAGAATGGATT-AA-A--ACAAGATCA
9233357 TATC
126 TATC
* *
9233361 TCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGT
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGT
* *
9233426 ACATTGAAGCCAGT-ATTCCTATCTCCTTGAAGTTGCAATAGAGTGGATTAAAACCAGAGATCTT
66 ACATTGAAGCCAGTAATT-CTATCTCCTTG-AGTTGCAATAGAATGGATTAAAA-CA-AGATCAT
9233490 ATC
127 ATC
*
9233493 TCTCTAA
1 TCCCTAA
9233500 AGTTGCAGTA
Statistics
Matches: 232, Mismatches: 28, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
129 1 0.00
130 4 0.02
131 9 0.04
132 202 0.87
133 16 0.07
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (129 bp):
TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGT
ACATTGAAGCCAGTAATTCTATCTCCTTGAGTTGCAATAGAATGGATTAAAACAAGATCATATC
Found at i:9235016 original size:3 final size:3
Alignment explanation
Indices: 9235010--9235061 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
9235000 TTAGTTTTTG
* * *
9235010 TTA TTA TTA TTA TTA CTA TTA TCA TTA TTA -TA TTA TATA GTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
9235055 TAA TTA T
1 TTA TTA T
9235062 ACTTACATAT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 35 0.90
4 2 0.05
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:9235053 original size:24 final size:24
Alignment explanation
Indices: 9235010--9235061 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
9235000 TTAGTTTTTG
*
9235010 TTATTATTATTATTACTATTATCA
1 TTATTATTATTATTACTATTATAA
*
9235034 TTATTA-TATTATATAGTATTATAA
1 TTATTATTATTAT-TACTATTATAA
9235058 TTAT
1 TTAT
9235062 ACTTACATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (24 bp):
TTATTATTATTATTACTATTATAA
Found at i:9258173 original size:28 final size:27
Alignment explanation
Indices: 9258122--9258175 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
9258112 AACTTGATAC
*
9258122 TTTTTTCTAATTTGTTATCTAAACTTT
1 TTTTTTCTAATTTGGTATCTAAACTTT
9258149 TTTTTATCTAATTTGGTA-CTCAAACTT
1 TTTTT-TCTAATTTGGTATCT-AAACTT
9258176 GACAAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.24, C:0.13, G:0.06, T:0.57
Consensus pattern (27 bp):
TTTTTTCTAATTTGGTATCTAAACTTT
Found at i:9264050 original size:20 final size:21
Alignment explanation
Indices: 9264025--9264066 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
9264015 AAATCATATT
9264025 ATTTGGTTCAATT-TTATTTA
1 ATTTGGTTCAATTATTATTTA
**
9264045 ATTTGGTTTGATTATTATTTA
1 ATTTGGTTCAATTATTATTTA
9264066 A
1 A
9264067 ATATATTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (21 bp):
ATTTGGTTCAATTATTATTTA
Found at i:9267944 original size:3 final size:3
Alignment explanation
Indices: 9267936--9267970 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
9267926 CAAATATCTT
9267936 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
9267971 TCTAGTGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:9275736 original size:125 final size:125
Alignment explanation
Indices: 9275496--9275777 Score: 426
Period size: 125 Copynumber: 2.3 Consensus size: 125
9275486 TTATTTCGAG
* * **
9275496 TTGATGTTTCTG-GTCAAATAGTATAAAATTGCTTCTACCAGGATGCTATCAGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTAATACCAGGATGCTATCAGAGAAGAAATTGT
*
9275560 GAAATCGTGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATT-TTTT
65 GAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
*
9275620 TTGACGTTTTTTGAGCAAATAGTATAAAATCGCTAATACCAGGATGCTAT-ATGAGAAGAAATTG
1 TTGACG-TTTCTGAGCAAATAGTATAAAATCGCTAATACCAGGATGCTATCA-GAGAAGAAATTG
*
9275684 TGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAGGAAATAATTATTTT
64 TGAAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
* * *
9275746 TTGATGTTTCTGAGCAAATAGTGTCAAATCGC
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGC
9275778 ACCCTCGTGG
Statistics
Matches: 143, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
124 6 0.04
125 127 0.89
126 10 0.07
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (125 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTAATACCAGGATGCTATCAGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
Found at i:9280215 original size:856 final size:856
Alignment explanation
Indices: 9277648--9280218 Score: 4881
Period size: 856 Copynumber: 3.0 Consensus size: 856
9277638 GGAGTCGTCT
9277648 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
1 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
*
9277713 TATTTCAGATCGGGGCGCCGATATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
66 TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
* *
9277778 CACACTATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGCAATTTTCATCTAAGACC
131 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
9277843 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
196 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
*
9277908 AATTAGTTTAATTGGTTGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
261 AATTAGTTTAATTGGTAGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
9277973 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
326 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
*
9278038 CTACCTTTGCAACATACGTTTCGAACAGTAGGCACAAGCATACGACGGAGGCCTACGATATGGCC
391 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
9278103 ATATGACATCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
456 ATATGACATCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
* *
9278168 ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTTCAAAGCGAGCGACAACTTA
521 ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
9278233 TGCAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
586 TGCAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
9278298 ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
651 ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
9278363 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
716 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
9278428 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
781 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
*
9278493 AACTCCGCCTA
846 AACTCCGCCTG
9278504 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
1 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
9278569 TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
66 TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
9278634 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
131 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
*
9278699 GAACGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
196 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
9278764 AATTAGTTTAATTGGTAGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
261 AATTAGTTTAATTGGTAGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
9278829 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
326 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
9278894 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
391 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
9278959 ATATGACATCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
456 ATATGACATCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
*
9279024 ACAGAGATTGTGCGAGAGACATATTTCCGTTTGACGGCGCTATTTCCAAAGCGAGCGGCAACTTA
521 ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
*
9279089 TACAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
586 TGCAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
* *
9279154 ACGTGAGGCCAAACATCATGCACGCAGTGTGCCACGATCAAGACAATTTATGGTTTCGCGTGACG
651 ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
*
9279219 GAGTTTGACAGACTGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
716 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
* * *
9279284 TTGTGACTATGGGAAGTTCGATGCACTTCATTATCCATGTGCTCATGCTATTGCAGCCTGTCAGA
781 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
9279349 AACTCCGCCTG
846 AACTCCGCCTG
9279360 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
1 GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
*
9279425 TATTTCAGATCGGGGCACCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
66 TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
*
9279490 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGTAATTTTCATCTAAGACC
131 CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
9279555 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
196 GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
*
9279620 AATTAGTTTAATTGGTCGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
261 AATTAGTTTAATTGGTAGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
* * *
9279685 ATGAATAAAGATCGTTTTCACGAGATGTTGACAATCTTACGATTCTAAAACGGAGAAGGGGCGGA
326 ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
*
9279750 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGTATACGACGGAGGCCTACGATATGGCC
391 CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
* *
9279815 ATATGACGTCGAACCTGGCAGAATGCATAAATTCTGTTCTGAAAGGAACGCGCCATCTACCGATA
456 ATATGACATCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
* *
9279880 ACAGAGATTGTGCGAGAGGCATATTTCCGTTTGGCGACGCTATTTCCAAAGCGAGCGGCAACTTA
521 ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
9279945 TGCAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
586 TGCAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
9280010 ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
651 ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
*
9280075 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCAGAACATGAC
716 GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
9280140 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
781 TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
9280205 AACTCCGCCTG
846 AACTCCGCCTG
9280216 GAT
1 GAT
9280219 CCGCTGAGTT
Statistics
Matches: 1677, Mismatches: 38, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
856 1677 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (856 bp):
GATGACTGGGATTTCTTTCTCTCTAGGTTAAGGAGGCATGTGTGCCCCCAACCTGATATCTGTGT
TATTTCAGATCGGGGCGCCGGTATACTAGCTGCATTTGATCGAGAGGAAAGCTTGTGGCAGCGTA
CACACCATAGATATTGCCTGAGACACGTTGCTTCGAACTACTACAGGAAATTTTCATCTAAGACC
GAATGACGACAAGTGACCAACATGGGTATTTACTATATAACTGTATTATTTCGTTTGTCATTTTG
AATTAGTTTAATTGGTAGAAGTGGTATAAAATATTCGTTATGTTCTTATATTGGTAGGGTATGAA
ATGAATAAAGATCGTTTTCACAAGATGTTGGCAATCTTACGATTCCAAAACGGAGAAGGGGCGGA
CTACCTTTGCAACATACGTTTCGAACAGTGGGCACAAGCATACGACGGAGGCCTACGATATGGCC
ATATGACATCGAACCTGGCAGAATGCATAAATTCTGTTCTTAAAGGAACGCGCCATCTACCGATA
ACAGAGATTGTGCGAGAGACATATTTCCGTTTGGCGGCGCTATTTCCAAAGCGAGCGGCAACTTA
TGCAGGCCAGATGCAGGGTGGGCATGTATGGTGCAGTAAGGTAGTTCAAGAAATTAACAAGGCGA
ACGTGAGGGCAAACATCATGCACGCAGTGTGTCACGATCAAGACAATTTATGGTTTCGCGTGACG
GAGTTTGACAGACCGCACCAAGGTGTTGTTGGCGGGCAATATCGTGTACACTTGCGGAACATGAC
TTGTGACTGTGGGAAGTTCGATGCACTTCGTTATCCATGCGCTCATGCTATTGCAGCCTGTCAGA
AACTCCGCCTG
Found at i:9280685 original size:29 final size:29
Alignment explanation
Indices: 9280633--9281033 Score: 507
Period size: 29 Copynumber: 13.7 Consensus size: 29
9280623 CGAAATTAGG
* *
9280633 TTAGGGTTTAGGGTTCTTAGTTAAATTAAA
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAA
9280663 TTAGGGTTAGGGTTTTTAATTAAATTAAA
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* **
9280692 TTAGGGTTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* *
9280721 TTAGGTTTTAGGGTTCTTAATTAAATTAAA
1 TTAGG-GTTAGGGTTTTTAATTAAATTAAA
**
9280751 TTAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* **
9280780 TTAGGGTTTAGGGTTCTTAATTAAATTAGG
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAA
* *
9280810 TTAGAGTTTAGGGTTCTTAATTAAATTAAA
1 TTAG-GGTTAGGGTTTTTAATTAAATTAAA
**
9280840 TTAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* *
9280869 TTAGGGTTTAGGGTTCTTAATTAAAGTAAA
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAA
**
9280899 TTAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* *
9280928 TCAGGGTTTAGGGTTCTTAATTAAATTAAA
1 TTAGGG-TTAGGGTTTTTAATTAAATTAAA
*
9280958 TTAGGGTTAGGGGTTTTAATTAAATTAAA
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
* **
9280987 TTAGGGTTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTAGGGTTTTTAATTAAATTAAA
9281016 TTAGGGTT-GGGTTTTTAA
1 TTAGGGTTAGGGTTTTTAA
9281034 ACAAATTATA
Statistics
Matches: 325, Mismatches: 41, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
28 10 0.03
29 183 0.56
30 131 0.40
31 1 0.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (29 bp):
TTAGGGTTAGGGTTTTTAATTAAATTAAA
Found at i:9280696 original size:59 final size:59
Alignment explanation
Indices: 9280633--9281033 Score: 531
Period size: 59 Copynumber: 6.8 Consensus size: 59
9280623 CGAAATTAGG
*
9280633 TTAGGGTTTAGGGTTCTTAGTTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTAAA
1 TTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTAAA
* * ** * *
9280692 TTAGGG-TTAGGGTTTTTAATTTAATTAGGTTAGGTTTTAGGGTTCTTAATTAAATTAAA
1 TTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGG-GTTAGGGTTTTTAATTAAATTAAA
* ** * **
9280751 TTAGGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTAGG
1 TTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGG-TTAGGGTTTTTAATTAAATTAAA
* **
9280810 TTAGAGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTAAA
* **
9280869 TTAGGGTTTAGGGTTCTTAATTAAAGTAAATTAGGGTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTAAA
* *
9280928 TCAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGGTTTTAATTAAATTAAA
1 TTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTAAA
* * **
9280987 TTAGGG-TTAGGGTTTTTAATTTAATTAGGTTAGGGTT-GGGTTTTTAA
1 TTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTTAA
9281034 ACAAATTATA
Statistics
Matches: 310, Mismatches: 29, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
57 9 0.03
58 50 0.16
59 225 0.73
60 26 0.08
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (59 bp):
TTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTAAA
Found at i:9280866 original size:148 final size:146
Alignment explanation
Indices: 9280625--9281023 Score: 690
Period size: 148 Copynumber: 2.7 Consensus size: 146
9280615 ATATTTTACG
*
9280625 AAATTAGGTTAGGGTTTAGGGTTCTTAGTTAAATTAAATTAGGGTTAGGGTTTTTAATTAAATTA
1 AAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGG-TTTTAATTAAATTA
* *
9280690 AATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGTTTTAGGGTTCTTAATTAAATTAAATTAG
65 AATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTAGGGTTCTTAATTAAAGTAAATTAG
9280755 GGTTAGGGTTTTTAATT
130 GGTTAGGGTTTTTAATT
** *
9280772 AAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTAGGTTAGAGTTTAGGGTTCTTAATTAAATT
1 AAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTAAATTAG-GGTTAGGGTT-TTAATTAAATT
*
9280837 AAATTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTTCTTAATTAAAGTAAATTA
64 AAATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTAGGGTTCTTAATTAAAGTAAATTA
9280902 GGGTTAGGGTTTTTAATT
129 GGGTTAGGGTTTTTAATT
*
9280920 AAATTAGGTCAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGGTTTTAATTAAATTA
1 AAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTA-GGGTTTTAATTAAATTA
9280985 AATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTT
65 AATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTT
9281024 GGGTTTTTAA
Statistics
Matches: 237, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
147 95 0.40
148 142 0.60
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (146 bp):
AAATTAGGTTAGGGTTTAGGGTTCTTAATTAAATTAAATTAGGGTTAGGGTTTTAATTAAATTAA
ATTAGGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTAGGGTTCTTAATTAAAGTAAATTAGG
GTTAGGGTTTTTAATT
Found at i:9281351 original size:24 final size:24
Alignment explanation
Indices: 9281319--9281374 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
9281309 TGTATGTGGA
*
9281319 GGTGTTTGCATCATGAATGGCGAC
1 GGTGTTTGCATCATGAACGGCGAC
9281343 GGTGTTTGCATCATGAACGGCGAC
1 GGTGTTTGCATCATGAACGGCGAC
*
9281367 GGAGTTTG
1 GGTGTTTG
9281375 AAAGCCATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.29
Consensus pattern (24 bp):
GGTGTTTGCATCATGAACGGCGAC
Found at i:9282650 original size:39 final size:39
Alignment explanation
Indices: 9282625--9282719 Score: 163
Period size: 39 Copynumber: 2.4 Consensus size: 39
9282615 TCATACATTA
9282625 ATCCATCAACATATTTAATTTCATAACAAGATATAAATT
1 ATCCATCAACATATTTAATTTCATAACAAGATATAAATT
* *
9282664 GTCCATCAACATATTTAATTTCATAACAAAATATAAATT
1 ATCCATCAACATATTTAATTTCATAACAAGATATAAATT
*
9282703 GTCCATCAACATATTTA
1 ATCCATCAACATATTTA
9282720 GAAGGAAAGC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (39 bp):
ATCCATCAACATATTTAATTTCATAACAAGATATAAATT
Found at i:9282674 original size:22 final size:22
Alignment explanation
Indices: 9282649--9282713 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
9282639 TTAATTTCAT
*
9282649 AACAAGATATAAATTGTCCATC
1 AACAAAATATAAATTGTCCATC
* *
9282671 AAC-ATAT-TTAATT-T-CAT-
1 AACAAAATATAAATTGTCCATC
9282688 AACAAAATATAAATTGTCCATC
1 AACAAAATATAAATTGTCCATC
9282710 AACA
1 AACA
9282714 TATTTAGAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
17 3 0.09
18 6 0.18
19 6 0.18
20 6 0.18
21 6 0.18
22 7 0.21
ACGTcount: A:0.48, C:0.17, G:0.05, T:0.31
Consensus pattern (22 bp):
AACAAAATATAAATTGTCCATC
Found at i:9282677 original size:19 final size:19
Alignment explanation
Indices: 9282655--9282716 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
9282645 TCATAACAAG
9282655 ATATAAATTGTCCATCAAC
1 ATATAAATTGTCCATCAAC
* *
9282674 ATATTTAATT-T-CATAACAAA
1 ATA-TAAATTGTCCAT--CAAC
9282694 ATATAAATTGTCCATCAAC
1 ATATAAATTGTCCATCAAC
9282713 ATAT
1 ATAT
9282717 TTAGAAGGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
18 3 0.09
19 16 0.47
20 12 0.35
21 3 0.09
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.35
Consensus pattern (19 bp):
ATATAAATTGTCCATCAAC
Found at i:9282697 original size:20 final size:20
Alignment explanation
Indices: 9282635--9282697 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
9282625 ATCCATCAAC
*
9282635 ATATTTAATTTCATAACAAG
1 ATATTTAATTTCATAACAAA
* *
9282655 ATA-TAAATTGTCCAT--CAAC
1 ATATTTAATT-T-CATAACAAA
9282674 ATATTTAATTTCATAACAAA
1 ATATTTAATTTCATAACAAA
9282694 ATAT
1 ATAT
9282698 AAATTGTCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
18 3 0.09
19 12 0.35
20 16 0.47
21 3 0.09
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.38
Consensus pattern (20 bp):
ATATTTAATTTCATAACAAA
Found at i:9282773 original size:9 final size:9
Alignment explanation
Indices: 9282755--9282800 Score: 65
Period size: 9 Copynumber: 5.1 Consensus size: 9
9282745 CGAAGAAACA
*
9282755 TCATCATCC
1 TCATCGTCC
9282764 TCATCGTCC
1 TCATCGTCC
*
9282773 TCATCGTCG
1 TCATCGTCC
9282782 TCATCGTCC
1 TCATCGTCC
*
9282791 TCATTGTCC
1 TCATCGTCC
9282800 T
1 T
9282801 TTTTGCAACC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.13, C:0.39, G:0.11, T:0.37
Consensus pattern (9 bp):
TCATCGTCC
Found at i:9285299 original size:42 final size:42
Alignment explanation
Indices: 9285253--9285372 Score: 197
Period size: 42 Copynumber: 2.9 Consensus size: 42
9285243 GTTATTAAAT
9285253 ATTTTAAATTAATAACTCTTTAATTTGTTATAAATATATAGA
1 ATTTTAAATTAATAACTCTTTAATTTGTTATAAATATATAGA
***
9285295 ATTTTAAATTAATTTGT-TATTAATTTGTTATAAATATATAGA
1 ATTTTAAATTAATAACTCT-TTAATTTGTTATAAATATATAGA
9285337 ATTTTAAATTAATAACTCTTTAATTTGTTATAAATA
1 ATTTTAAATTAATAACTCTTTAATTTGTTATAAATA
9285373 ATAAAAATTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
41 1 0.01
42 68 0.97
43 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (42 bp):
ATTTTAAATTAATAACTCTTTAATTTGTTATAAATATATAGA
Found at i:9286253 original size:8 final size:8
Alignment explanation
Indices: 9286240--9286284 Score: 53
Period size: 8 Copynumber: 6.1 Consensus size: 8
9286230 TTATTTCCAG
9286240 ATATAAAC
1 ATATAAAC
9286248 ATATAAAC
1 ATATAAAC
9286256 ----AAAC
1 ATATAAAC
*
9286260 ATATAAAT
1 ATATAAAC
9286268 ATATAAAC
1 ATATAAAC
9286276 ATATAAAC
1 ATATAAAC
9286284 A
1 A
9286285 AACATTTAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
4 4 0.13
8 27 0.87
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.24
Consensus pattern (8 bp):
ATATAAAC
Found at i:9289070 original size:29 final size:29
Alignment explanation
Indices: 9289031--9289089 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
9289021 TTGAAAATAT
9289031 TAAAAATTTTAAAATTAT-TTTAAAAAAA
1 TAAAAATTTTAAAATTATCTTTAAAAAAA
*
9289059 TAAAAATATTTAAAATTTTCTTTAAAAAAA
1 TAAAAAT-TTTAAAATTATCTTTAAAAAAA
9289089 T
1 T
9289090 GAAATTGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 7 0.25
29 10 0.36
30 11 0.39
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (29 bp):
TAAAAATTTTAAAATTATCTTTAAAAAAA
Found at i:9289148 original size:22 final size:21
Alignment explanation
Indices: 9289123--9289173 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
9289113 TAATATGAAT
*
9289123 TTGAGAGATTTTTTGAAGGAAA
1 TTGAGAGA-TTTTGGAAGGAAA
*
9289145 TTGAGAGGATTTTGGAAGGAAT
1 TTGAGA-GATTTTGGAAGGAAA
9289167 TTGAGAG
1 TTGAGAG
9289174 TTTAAGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.88
23 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (21 bp):
TTGAGAGATTTTGGAAGGAAA
Found at i:9289862 original size:15 final size:16
Alignment explanation
Indices: 9289842--9289872 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
9289832 ATCTAGGATT
9289842 TTTTTGGTAT-TTTTA
1 TTTTTGGTATATTTTA
9289857 TTTTTGGTATATTTTA
1 TTTTTGGTATATTTTA
9289873 GATCAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.16, C:0.00, G:0.13, T:0.71
Consensus pattern (16 bp):
TTTTTGGTATATTTTA
Found at i:9299950 original size:60 final size:61
Alignment explanation
Indices: 9299871--9299984 Score: 176
Period size: 60 Copynumber: 1.9 Consensus size: 61
9299861 TATATGGTTT
* *
9299871 TTTCTTTTTTTGGTCACCTATCTATAAAAAGTTACAAAATGGTCACCCAACTATTAGTAAA
1 TTTCTTTTTTTGGTCACCTAACTATAAAAAGTTACAAAATGGACACCCAACTATTAGTAAA
* * *
9299932 TTTC-TTTTTTGGTCACCTAACTATGAAAAGTTATAAAATGGACACGCAACTAT
1 TTTCTTTTTTTGGTCACCTAACTATAAAAAGTTACAAAATGGACACCCAACTAT
9299985 CCAATTTTGT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
60 44 0.92
61 4 0.08
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (61 bp):
TTTCTTTTTTTGGTCACCTAACTATAAAAAGTTACAAAATGGACACCCAACTATTAGTAAA
Found at i:9300142 original size:60 final size:60
Alignment explanation
Indices: 9300048--9300195 Score: 183
Period size: 60 Copynumber: 2.5 Consensus size: 60
9300038 AAAATCTAAG
* * *
9300048 ATAGTTGAGTGACCGAAAAAGACAAA-ATTGAATAGTTGAATGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCAAAAAAGA-AAATACTGAATAGTTGAATGACCATTTTGTAACTTTTC
**
9300108 ATAGTTGGGTGACCAAAAAAGAAAATCACT-AATAGTTGGTTGACCATTTTGTAACTTTTC
1 ATAGTTGGGTGACCAAAAAAGAAAAT-ACTGAATAGTTGAATGACCATTTTGTAACTTTTC
* * *
9300168 ATAGCTAGGTGACCAAAACAGGAAAATA
1 ATAGTTGGGTGACCAAAA-AAGAAAATA
9300196 GTTGGAATAC
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
59 3 0.04
60 65 0.84
61 9 0.12
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (60 bp):
ATAGTTGGGTGACCAAAAAAGAAAATACTGAATAGTTGAATGACCATTTTGTAACTTTTC
Found at i:9303383 original size:30 final size:30
Alignment explanation
Indices: 9303349--9303405 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
9303339 TATTAATTAT
9303349 TTTTTAAAATTT-AAAATATATTTTTAATAC
1 TTTTTAAAATTTCAAAAT-TATTTTTAATAC
**
9303379 TTTTTAATTTTTCAAAATTATTTTTAA
1 TTTTTAAAATTTCAAAATTATTTTTAA
9303406 AAAATTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.58
Consensus pattern (30 bp):
TTTTTAAAATTTCAAAATTATTTTTAATAC
Found at i:9305199 original size:30 final size:29
Alignment explanation
Indices: 9305163--9305226 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
9305153 TTTTTTTATA
* *
9305163 AAAATAATATTAAAAAATAAATTAATTACG
1 AAAATAATA-CAAAAAACAAATTAATTACG
*
9305193 AAAATAATACGAAAAACAAATTAATTACG
1 AAAATAATACAAAAAACAAATTAATTACG
*
9305222 GAAAT
1 AAAAT
9305227 GAGATGTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 21 0.70
30 9 0.30
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.25
Consensus pattern (29 bp):
AAAATAATACAAAAAACAAATTAATTACG
Found at i:9306127 original size:19 final size:19
Alignment explanation
Indices: 9306076--9306129 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
9306066 AATCTTCAAG
*
9306076 GATATGCAATCATAGATAT
1 GATATGCAATCTTAGATAT
* *
9306095 GATATGTAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
9306114 GATATGCAACCTTAGA
1 GATATGCAATCTTAGA
9306130 AGATATGATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9306380 original size:23 final size:23
Alignment explanation
Indices: 9306336--9306380 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
9306326 TCTTATTTTG
* *
9306336 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
9306359 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
9306381 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:9312109 original size:88 final size:88
Alignment explanation
Indices: 9311953--9312603 Score: 955
Period size: 88 Copynumber: 7.4 Consensus size: 88
9311943 AAGATAACAA
* * * * * *
9311953 ATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCTTAGGCTGTA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9312018 GCGGAGCAGGTTAAAAATAGCAA
66 GCGGAGCAGGTTAAAAATAGCAG
* * * * * *
9312041 ATCTTGCTTTCCTGCGCCAACAGCAAAGCAGATCGAAGACACTAGCCTTTCCTCCCTGGGTTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
9312106 GCGGAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
* *
9312129 ATCTTACCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
* *
9312194 ACGGAGCAAGTTAAAAATTA-CAG
66 GCGGAGCAGGTTAAAAA-TAGCAG
* **
9312217 ATCTTGCCTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAATTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9312282 GCGAAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
* * * * *
9312305 ATCTTGCCTTCCTGCACCAACAGCGAAGCAAATAGAAGACACCAACCTTGCCT-CCTGGGTTGTA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9312369 GCGAAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
* *
9312392 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTCCCTGGGTTACA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9312457 GCAGAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
* * * *
9312480 ATCTTACCTTCCTGTACCGACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGGGTTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
*
9312545 GCGAAGCAGGTTAAAAATAGCAG
66 GCGGAGCAGGTTAAAAATAGCAG
*
9312568 ATCTTGCCTTTCTGCACCGACAGCGAAGCAGATCGA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
9312604 TGACCCCAAC
Statistics
Matches: 502, Mismatches: 58, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
87 81 0.16
88 419 0.83
89 2 0.00
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (88 bp):
ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCA
GCGGAGCAGGTTAAAAATAGCAG
Found at i:9312472 original size:263 final size:264
Alignment explanation
Indices: 9311953--9312597 Score: 954
Period size: 263 Copynumber: 2.4 Consensus size: 264
9311943 AAGATAACAA
* * * * *
9311953 ATCTTGCCTTCCTGCACCAACAGCGAAGCAGATCGAAGACACCAACCTTGCCT-CCTTAGGCTGT
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGA-GTTGC
* * * * * * *
9312017 AGCGGAGCAGGTTAAAAATAGCAAATCTTGCTTTCCTGCGCCAACAGCAAAGCAGATCGAAGACA
65 AGCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAAATAGAAGACA
* * * *
9312082 CTAGCCTTTCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACC
130 CCAACCTTGCCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACC
** *
9312147 GACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAACGGAGCAAGTTAAAAAT
195 GACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAACAGAGCAAGTTAAAAA-
9312212 TA-CAG
259 TAGCAG
* *
9312217 ATCTTGCCTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAATTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTGCA
9312282 GCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAAATAGAAGACAC
66 GCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAAATAGAAGACAC
* *
9312347 CAACCTTGCCT-CCTGGGTTGTAGCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCG
131 CAACCTTGCCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCG
* * *
9312411 ACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTCCCTGGGTTACAGCAGAGCAGGTTAAAAATA
196 ACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAACAGAGCAAGTTAAAAATA
9312476 GCAG
261 GCAG
* * * * *
9312480 ATCTTACCTTCCTGTACCGACAACGAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGGGTTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTGCA
* *
9312545 GCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTTCTGCACCGACAGCGAAGCA
66 GCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCA
9312598 GATCGATGAC
Statistics
Matches: 344, Mismatches: 35, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
262 2 0.01
263 219 0.64
264 119 0.35
265 4 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.20
Consensus pattern (264 bp):
ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAGTTGCA
GCGAAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCAACAGCGAAGCAAATAGAAGACAC
CAACCTTGCCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCG
ACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTACAACAGAGCAAGTTAAAAATA
GCAG
Found at i:9312681 original size:43 final size:44
Alignment explanation
Indices: 9312614--9312734 Score: 149
Period size: 43 Copynumber: 2.8 Consensus size: 44
9312604 TGACCCCAAC
**
9312614 CCTATCTTTCTGGACAGCAGTGGAATAGGTTGAAGATTGT-AAGT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAA-T
*
9312658 CCTATCTCCCTGGTCAG-AGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
9312701 CCTATCTCCCT-GAGCAACAGTGGAGTAAGTTGAA
1 CCTATCTCCCTGGA-CAGCAGTGGAATAGGTTGAA
9312735 AATAGTAGAT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
42 1 0.01
43 36 0.54
44 30 0.45
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:9312756 original size:351 final size:351
Alignment explanation
Indices: 9311963--9312617 Score: 891
Period size: 351 Copynumber: 1.9 Consensus size: 351
9311953 ATCTTGCCTT
* * * *** * *
9311963 CCTGCACCAACAGCGAAGCAGATCGAAGACACCAACCTTGCCTCCTTAGGCTGTAGCGGAGCAGG
1 CCTGCACCAACAGCGAAGCAAATAGAAGACACCAACCTTGCCTCCTGA-GCAACAGCGAAGCAAG
* * * * * * * *
9312028 TTAAAAATAGCAAATCTTGCTTTCCTGCGCCAACAGCAAAGCAGATCGAAGACACTAGCCTTTCC
65 TTAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGTCTTGCC
* * *
9312093 TCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCGACAGCGAAGC
130 TCCCTGGGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCGACAACGAAGC
* *
9312158 AGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAACGGAGCAAGTTAAAAATTACAGATCTTG
195 AGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAACGAAGCAAGTTAAAAATTACAGATCTTG
* * * **
9312223 CCTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGAATTGCAGCGAAG
260 CCTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAACCCTACCTCCCTGAACAGCAGCGAAG
* * * *
9312288 CAGGTTAAAAATAGCAGATCTTGCCTT
325 CAGGTTAAAAATAGAAGATCCTACCTC
* **** *
9312315 CCTGCACCAACAGCGAAGCAAATAGAAGACACCAACCTTGCCTCCTGGGTTGTAGCGAAGCAGGT
1 CCTGCACCAACAGCGAAGCAAATAGAAGACACCAACCTTGCCTCCTGAGCAACAGCGAAGCAAGT
9312380 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGTCTTGCCT
66 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGTCTTGCCT
*
9312445 CCCTGGGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGTACCGACAACGAAGCA
131 CCCTGGGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCGACAACGAAGCA
* * *
9312510 GATCGAAGACACCAGCCTTGCCTCTCTGGGTTGCAGCGAAGCAGGTTAAAAA-TAGCAGATCTTG
196 GATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAACGAAGCAAGTTAAAAATTA-CAGATCTTG
* *
9312574 CCTTTC-TGCACCGACAGCGAAGCAGATCGATGACCCCAACCCTA
260 CC-TTCATGCACCGACAGCGAAGCAGATCGAAGACACCAACCCTA
9312618 TCTTTCTGGA
Statistics
Matches: 273, Mismatches: 28, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
350 2 0.01
351 224 0.82
352 47 0.17
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.19
Consensus pattern (351 bp):
CCTGCACCAACAGCGAAGCAAATAGAAGACACCAACCTTGCCTCCTGAGCAACAGCGAAGCAAGT
TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGTCTTGCCT
CCCTGGGTTACAGCAGAGCAGGTTAAAAATAGCAGATCTTACCTTCCTGCACCGACAACGAAGCA
GATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAACGAAGCAAGTTAAAAATTACAGATCTTGC
CTTCATGCACCGACAGCGAAGCAGATCGAAGACACCAACCCTACCTCCCTGAACAGCAGCGAAGC
AGGTTAAAAATAGAAGATCCTACCTC
Found at i:9313408 original size:44 final size:44
Alignment explanation
Indices: 9313311--9313408 Score: 99
Period size: 44 Copynumber: 2.2 Consensus size: 44
9313301 GAAGATGGCG
* * *
9313311 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCAAT
1 AATCTTATCTCCCTAAAGTTACAGTGGAACAGATTAAAACCAAT
* * *** *
9313355 AATCCTATCTTCCTAAAGTTACAGTGGAGTGGATTAAAATCACA-
1 AATCTTATCTCCCTAAAGTTACAGTGGAACAGATTAAAACCA-AT
9313399 AATCTTATCT
1 AATCTTATCT
9313409 ATCTGAAGTT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
44 42 0.98
45 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTAAAGTTACAGTGGAACAGATTAAAACCAAT
Found at i:9313491 original size:45 final size:45
Alignment explanation
Indices: 9313440--9313599 Score: 171
Period size: 45 Copynumber: 3.6 Consensus size: 45
9313430 ATCGCATTGG
* *
9313440 GTCTTATCTCCCTGAAGTTGCAGTTGAGCAGACCCAAGAAAGCGA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAA
* * *
9313485 GTCTTATCTCCCTGAAGTTGCAGTGGAGCACACTCAAGAAATCAA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAA
* * ** *
9313530 GTCTTATC-CCCTTGAAATTGCAGTGGGGCAGACTAAATAAA-CAA
1 GTCTTATCTCCC-TGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAA
* * * *
9313574 ATCTCATCTCCCTAAAGTTGTAGTGG
1 GTCTTATCTCCCTGAAGTTGCAGTGG
9313600 CCAGGAATGA
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
44 23 0.23
45 75 0.77
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCAA
Done.