Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 34 of 189
Found at i:10496725 original size:25 final size:25
Alignment explanation
Indices: 10496697--10496877 Score: 85
Period size: 25 Copynumber: 7.1 Consensus size: 25
10496687 CTTTTTTTTA
10496697 ATTATTCATAAATTACATAACTTAC
1 ATTATTCATAAATTACATAACTTAC
10496722 ATTAATGCAATACATAAATTACATAACTTA-
1 ATT-AT----T-CATAAATTACATAACTTAC
* *
10496752 ATTAATTAAT-ATTATACATAACTTAC
1 ATT-ATTCATAAAT-TACATAACTTAC
* * *
10496778 ATAACTT-ACAACTTACATAACTTAC
1 ATTA-TTCATAAATTACATAACTTAC
* ***
10496803 A--ACTTACATAACTTACATTTGTTTA-
1 ATTA-TT-CATAAATTACA-TAACTTAC
10496828 ATTATTCATAAATTACATAACTTAC
1 ATTATTCATAAATTACATAACTTAC
10496853 -TTAATTTCAT-AA-TA-ATAACTTAC
1 ATT-A-TTCATAAATTACATAACTTAC
10496876 AT
1 AT
10496878 AACTTACATT
Statistics
Matches: 124, Mismatches: 13, Indels: 39
0.70 0.07 0.22
Matches are distributed among these distances:
23 13 0.10
24 11 0.09
25 54 0.44
26 20 0.16
27 1 0.01
30 7 0.06
31 18 0.15
ACGTcount: A:0.44, C:0.15, G:0.01, T:0.39
Consensus pattern (25 bp):
ATTATTCATAAATTACATAACTTAC
Found at i:10496738 original size:115 final size:115
Alignment explanation
Indices: 10496592--10496802 Score: 395
Period size: 115 Copynumber: 1.8 Consensus size: 115
10496582 AAAATACCAG
**
10496592 AATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATA
1 AATTACATAACTTACATTAATACAATACATAAATTACATAACTTAATTAATTAATATTATACATA
10496657 ACTTACATAACTTACAACTTACATAACTTACTTTTTTTTAATTATTCATA
66 ACTTACATAACTTACAACTTACATAACTTACTTTTTTTTAATTATTCATA
*
10496707 AATTACATAACTTACATTAATGCAATACATAAATTACATAACTTAATTAATTAATATTATACATA
1 AATTACATAACTTACATTAATACAATACATAAATTACATAACTTAATTAATTAATATTATACATA
10496772 ACTTACATAACTTACAACTTACATAACTTAC
66 ACTTACATAACTTACAACTTACATAACTTAC
10496803 AACTTACATA
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 93 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.39
Consensus pattern (115 bp):
AATTACATAACTTACATTAATACAATACATAAATTACATAACTTAATTAATTAATATTATACATA
ACTTACATAACTTACAACTTACATAACTTACTTTTTTTTAATTATTCATA
Found at i:10496792 original size:16 final size:16
Alignment explanation
Indices: 10496771--10496819 Score: 98
Period size: 16 Copynumber: 3.1 Consensus size: 16
10496761 TATTATACAT
10496771 AACTTACATAACTTAC
1 AACTTACATAACTTAC
10496787 AACTTACATAACTTAC
1 AACTTACATAACTTAC
10496803 AACTTACATAACTTAC
1 AACTTACATAACTTAC
10496819 A
1 A
10496820 TTTGTTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:10496828 original size:131 final size:125
Alignment explanation
Indices: 10496655--10496979 Score: 405
Period size: 131 Copynumber: 2.6 Consensus size: 125
10496645 ATATTATACA
*
10496655 TAACTTACATAACTTACAACTTACATAACTTACTTTTTTTTAATTATTCATAAATTACATAACTT
1 TAACTTACATAACTTACAACTTACATAACTTAC-ATTTTTTAATTATTCATAAATTACATAACTT
*
10496720 ACATTAA-TGC-AATACATAAATTACATAACTTAATTAATTAATATTATACATAACTTACATAAC
65 AC-TTAATTGCAAATA-ATAAATTACATAACTT-A--AATTAATATTATACATAAATTACATAAC
10496783 T
125 T
10496784 TACAACTTACATAACTTACAACTTACATAACTTACATTTGTTTAATTATTCATAAATTACATAAC
1 T--AACTTACATAACTTACAACTTACATAACTTACATTT-TTTAATTATTCATAAATTACATAAC
* * *
10496849 TTACTTAATTTCATAATAATAACTTACATAACTTACATTAATATTATACATAAATTACATAACT
63 TTACTTAATTGCA-AATAATAAATTACATAACTTAAATTAATATTATACATAAATTACATAACT
* ** *
10496913 TAA-TTA-ATATACATA-AA-TTACATAACTTACA-TTAAT-ATTATACATAAATTACATAACTT
1 TAACTTACATA-ACTTACAACTTACATAACTTACATTTTTTAATTATTCATAAATTACATAACTT
*
10496972 AGTTAATT
65 ACTTAATT
10496980 CATATTATAC
Statistics
Matches: 179, Mismatches: 10, Indels: 22
0.85 0.05 0.10
Matches are distributed among these distances:
121 29 0.16
122 1 0.01
123 2 0.01
124 14 0.08
125 5 0.03
126 7 0.04
127 2 0.01
129 29 0.16
130 7 0.04
131 64 0.36
132 15 0.08
133 4 0.02
ACGTcount: A:0.44, C:0.15, G:0.01, T:0.40
Consensus pattern (125 bp):
TAACTTACATAACTTACAACTTACATAACTTACATTTTTTAATTATTCATAAATTACATAACTTA
CTTAATTGCAAATAATAAATTACATAACTTAAATTAATATTATACATAAATTACATAACT
Found at i:10496838 original size:66 final size:66
Alignment explanation
Indices: 10496659--10497009 Score: 258
Period size: 65 Copynumber: 5.5 Consensus size: 66
10496649 TATACATAAC
* * ** * *
10496659 TTACATAACTTACAACTTACATAACTTACTTTTTTTTA-ATTATTCATAAATTACATAACTTAC-
1 TTACATAA-TAACAACTTACATAACTTACATTAATTAATATTATACATAAATTACATAACTTACT
10496722 -A
65 AA
* * *
10496723 TTA-ATGCAATACATAAATTACATAACTTA-ATTAATTAATATTATACATAACTTACATAACTTA
1 TTACAT--AATA-ACAACTTACATAACTTACATTAATTAATATTATACATAAATTACATAACTTA
10496786 C-AA
63 CTAA
* ** * *
10496789 CTTACATAACTTACAACTTACATAACTTACATTTGTTTA-ATTATTCATAAATTACATAACTTAC
1 -TTACATAA-TAACAACTTACATAACTTACATTAATTAATATTATACATAAATTACATAACTTAC
10496853 TTAA
64 -TAA
* *
10496857 TTTCATAATAATAACTTACATAACTTAC----ATTAATATTATACATAAATTACATAAC-T--TA
1 TTACATAATAACAACTTACATAACTTACATTAATTAATATTATACATAAATTACATAACTTACTA
10496915 A
66 A
* * *
10496916 TTA-AT-ATACATAAATTACATAACTTAC----ATTAATATTATACATAAATTACATAACTTAGT
1 TTACATAATA-ACAACTTACATAACTTACATTAATTAATATTATACATAAATTACATAACTTA-C
10496975 TAA
64 TAA
* *
10496978 TT-CATATTATACATAACTTACACAACTTACAT
1 TTACATA--ATA-ACAACTTACATAACTTACAT
10497010 AACTTACAAC
Statistics
Matches: 237, Mismatches: 27, Indels: 43
0.77 0.09 0.14
Matches are distributed among these distances:
57 3 0.01
58 46 0.19
59 6 0.03
62 11 0.05
63 22 0.09
64 9 0.04
65 60 0.25
66 59 0.25
67 17 0.07
68 4 0.02
ACGTcount: A:0.44, C:0.15, G:0.01, T:0.40
Consensus pattern (66 bp):
TTACATAATAACAACTTACATAACTTACATTAATTAATATTATACATAAATTACATAACTTACTA
A
Found at i:10496999 original size:34 final size:31
Alignment explanation
Indices: 10496532--10496670 Score: 165
Period size: 31 Copynumber: 4.4 Consensus size: 31
10496522 AACTTACAAC
*
10496532 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
** *
10496563 TTACATAACTT-AATTAATTAAAATACCA-GAA
1 TTACATAACTTAAATTAA-TATTATA-CATAAA
*
10496594 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTAAATTAATATTATACATAAA
*
10496625 TTACATAACTTAATTAATTAATATTATACATAAC
1 TTACATAACTT-A--AATTAATATTATACATAAA
10496659 TTACATAACTTA
1 TTACATAACTTA
10496671 CAACTTACAT
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
30 7 0.08
31 47 0.52
32 8 0.09
33 1 0.01
34 28 0.31
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (31 bp):
TTACATAACTTAAATTAATATTATACATAAA
Found at i:10497020 original size:16 final size:17
Alignment explanation
Indices: 10496987--10497033 Score: 71
Period size: 16 Copynumber: 2.8 Consensus size: 17
10496977 ATTCATATTA
10496987 TACATAACTTACACAACT
1 TACATAACTTA-ACAACT
10497005 TACATAACTT-ACAACT
1 TACATAACTTAACAACT
10497021 TACATAAC-TAACA
1 TACATAACTTAACA
10497034 TTTTTTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.04
16 17 0.61
18 10 0.36
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.28
Consensus pattern (17 bp):
TACATAACTTAACAACT
Found at i:10497089 original size:25 final size:25
Alignment explanation
Indices: 10497083--10497194 Score: 104
Period size: 25 Copynumber: 4.6 Consensus size: 25
10497073 TTCATAATAA
* *
10497083 ATAACTTACATAACTTACATAATAC
1 ATAACTTACATAATTTTCATAATAC
* * * *
10497108 ATAACTTATATGACTTACAT-A-AC
1 ATAACTTACATAATTTTCATAATAC
* *
10497131 -TTACATAGCATAATTTTCATAATAC
1 ATAACTTA-CATAATTTTCATAATAC
* *
10497156 ACAACTTACATAATTTTCATAATAA
1 ATAACTTACATAATTTTCATAATAC
10497181 ATAACTTACATAAT
1 ATAACTTACATAAT
10497195 ACATAACTTA
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
22 5 0.07
23 10 0.14
24 2 0.03
25 49 0.70
26 4 0.06
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAACTTACATAATTTTCATAATAC
Found at i:10497092 original size:34 final size:34
Alignment explanation
Indices: 10497049--10497168 Score: 100
Period size: 34 Copynumber: 3.4 Consensus size: 34
10497039 TTAATTATTC
*
10497049 ATAAATTACATAACTTACTTAATTTTCATAATAA
1 ATAACTTACATAACTTACTTAATTTTCATAATAA
* * *
10497083 ATAACTTACATAACTTACATAA--TACATAACTTAT
1 ATAACTTACATAACTTACTTAATTTTCATAA--TAA
* *
10497117 ATGACTTACATAACTTACATAGCATAATTTTCATAATAC
1 ATAACTTACATAACTTAC-T----TAATTTTCATAATAA
*
10497156 ACAACTTACATAA
1 ATAACTTACATAA
10497169 TTTTCATAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
32 6 0.09
34 39 0.58
39 16 0.24
41 6 0.09
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.36
Consensus pattern (34 bp):
ATAACTTACATAACTTACTTAATTTTCATAATAA
Found at i:10497108 original size:16 final size:16
Alignment explanation
Indices: 10497089--10497208 Score: 96
Period size: 16 Copynumber: 7.9 Consensus size: 16
10497079 ATAAATAACT
10497089 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
10497105 TACATAACTTATATGACT
1 TACATAACTTACAT-A-A
10497123 TACATAACTTACAT-A
1 TACATAACTTACATAA
* * *
10497138 -GCATAATTTTCATAA
1 TACATAACTTACATAA
*
10497153 TACACAACTTACATAA
1 TACATAACTTACATAA
10497169 T---T---TT-CATAA
1 TACATAACTTACATAA
*
10497178 TAAATAACTTACATAA
1 TACATAACTTACATAA
10497194 TACATAACTTACATA
1 TACATAACTTACATA
10497209 GCTTAATTAT
Statistics
Matches: 80, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
9 6 0.08
10 2 0.03
12 1 0.01
14 10 0.12
15 3 0.04
16 44 0.55
17 1 0.01
18 13 0.16
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:10502741 original size:66 final size:65
Alignment explanation
Indices: 10502633--10502798 Score: 217
Period size: 66 Copynumber: 2.5 Consensus size: 65
10502623 GAGAAAATTA
* * *
10502633 CACAACTTAAAGCAGAGGCAACATCGAGAGAAGCTGAAGTTCAA-AAAAGATATGAAGAACTCCA
1 CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAAGTTCAATAAAAG-TATGAAGAACTCCA
10502697 G
65 G
* * *
10502698 CTACAACTTAAAGCAGATGCAGCAGCGAGAGAAGTTGAGGTTCAATGAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAAGTTCAATAAAAGTATGAAGAACTCCA
10502763 G
65 G
* * *
10502764 CAGCAGCTTAAAGCAGATGCGGCAGCAAGAGAAGC
1 CA-CAACTTAAAGCAGATGCAGCAGCGAGAGAAGC
10502799 AGAGGTGGCA
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
65 2 0.02
66 82 0.93
67 4 0.05
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.14
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAAGTTCAATAAAAGTATGAAGAACTCCAG
Found at i:10502800 original size:21 final size:21
Alignment explanation
Indices: 10502774--10502846 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
10502764 CAGCAGCTTA
* *
10502774 AAGCAGATGCGGCAGCAAGAG
1 AAGCAGAGGCGGCAACAAGAG
*
10502795 AAGCAGAGGTGGCAACAAGAG
1 AAGCAGAGGCGGCAACAAGAG
* * * * * *
10502816 AAGTACAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAACAAGAG
10502837 AAGCAGAGGC
1 AAGCAGAGGC
10502847 TATAGTGAGG
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.37, C:0.18, G:0.40, T:0.05
Consensus pattern (21 bp):
AAGCAGAGGCGGCAACAAGAG
Found at i:10502844 original size:42 final size:42
Alignment explanation
Indices: 10502785--10502886 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 42
10502775 AGCAGATGCG
* * *
10502785 GCAGCAAGAGAAGCAGAGG-TGGCAACAAGAGAAGTACAGGCT
1 GCAGCGAGGGAAGCAGAGGCT-ACAACAAGAGAAGTACAGGCT
* *** *
10502827 GCAGCGAGGGAAGCAGAGGCTATAGTGAGGGAAGTACAGGCT
1 GCAGCGAGGGAAGCAGAGGCTACAACAAGAGAAGTACAGGCT
*
10502869 GCAGCGTGGGAAGCAGAG
1 GCAGCGAGGGAAGCAGAG
10502887 CAGCGTCAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 49 0.98
43 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.41, T:0.09
Consensus pattern (42 bp):
GCAGCGAGGGAAGCAGAGGCTACAACAAGAGAAGTACAGGCT
Found at i:10502847 original size:21 final size:21
Alignment explanation
Indices: 10502822--10502886 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
10502812 AGAGAAGTAC
10502822 AGGCTGCAGCGAGGGAAGCAG
1 AGGCTGCAGCGAGGGAAGCAG
** * * *
10502843 AGGCTATAGTGAGGGAAGTAC
1 AGGCTGCAGCGAGGGAAGCAG
*
10502864 AGGCTGCAGCGTGGGAAGCAG
1 AGGCTGCAGCGAGGGAAGCAG
10502885 AG
1 AG
10502887 CAGCGTCAAA
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.15, G:0.45, T:0.11
Consensus pattern (21 bp):
AGGCTGCAGCGAGGGAAGCAG
Found at i:10503313 original size:87 final size:86
Alignment explanation
Indices: 10503201--10503401 Score: 233
Period size: 87 Copynumber: 2.3 Consensus size: 86
10503191 AAATTTAGTG
* * * *
10503201 GCGTTTTTGGTAAAAGCGCCGCTAAATATGAAGG-TCTTTAACGGTGTTTGTGGAAAAAGCACCA
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGAT-AAGGTTCTTTAACGGCGTTTGTGGAAAAAGCACCA
*
10503265 CTAAAGATCATGGTCTTTAGCA
65 CTAAAGATCAGGGTCTTTAGCA
* ** *** *
10503287 GCGTTTGTGGGGAAAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTCGAAGCACCG
1 GCGTTTGT-GGGAAAAGCGCCGCTAAAGATAAGGTTCTTTAACGGCGTTTGTGGAAAAAGCACCA
* * * *
10503352 CTAGAGTTCAGGGTCTTTTGCG
65 CTAAAGATCAGGGTCTTTAGCA
10503374 GCGTTTGTGGGAAAAGCGCCGCTAAAGA
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGA
10503402 CCCTGATCTT
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
86 30 0.31
87 67 0.69
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (86 bp):
GCGTTTGTGGGAAAAGCGCCGCTAAAGATAAGGTTCTTTAACGGCGTTTGTGGAAAAAGCACCAC
TAAAGATCAGGGTCTTTAGCA
Found at i:10503412 original size:43 final size:43
Alignment explanation
Indices: 10503194--10503525 Score: 209
Period size: 43 Copynumber: 7.7 Consensus size: 43
10503184 ATCTGCCAAA
* * * * * * *
10503194 TTTAGTGGCGTTTTTGGTAAAAGCGCCGCTAAATATGAAGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGATC
* * * * * *
10503237 TTTAACGGTGTTTGTGGAAAAAGCACCACTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGATC
* * * *
10503280 TTTAGCAGCGTTTGTGGGGAAAAGCGCCGCTAAAGATTAGGTTC
1 TTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGATCATGATC
* *** * * * * *
10503324 TTTAGTGGCGTTTGTGGTCGAAGCACCGCTAGAGTTCAGGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGATC
* * *
10503367 TTTTGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCCTGATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGATC
* * * * * * * *
10503410 TTTAGTGGCGCTTGTCGCAAAAACGCCGCTAAAGACCCTGACC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGATC
* * * * * *
10503453 TTTAGCGGCGCTTCT-AGCAAAGCGCCGCTAAAGGT-ATTAGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGA-TC
* ** *
10503495 TTCAGCGGCGTTTGTGCTAGAAGCGCCGCTA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTA
10503526 TAGACCAACA
Statistics
Matches: 220, Mismatches: 66, Indels: 6
0.75 0.23 0.02
Matches are distributed among these distances:
41 2 0.01
42 27 0.12
43 156 0.71
44 35 0.16
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCATGATC
Found at i:10503672 original size:22 final size:22
Alignment explanation
Indices: 10503644--10503686 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10503634 TTGCGGCGCT
* *
10503644 AAAAAGCACTGCTAAAGGCCTA
1 AAAAAGCACCGCTAAAAGCCTA
*
10503666 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCACCGCTAAAAGCCT
10503687 GTTTTGGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.44, C:0.26, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAAAGCACCGCTAAAAGCCTA
Found at i:10507617 original size:5 final size:5
Alignment explanation
Indices: 10507607--10507635 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
10507597 GACTTGGTTT
10507607 TTATA TTATA TTATA TTATA TTATA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTAT
10507636 TGTTATCTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:10511538 original size:23 final size:23
Alignment explanation
Indices: 10511512--10511563 Score: 95
Period size: 23 Copynumber: 2.2 Consensus size: 23
10511502 GTGTGTATGT
10511512 ACAAATATATAATGAAGCTTGTG
1 ACAAATATATAATGAAGCTTGTG
10511535 ACAAATATATAATGAAGCTTGTG
1 ACAAATATATAATGAAGCTTGTG
10511558 ATCAAA
1 A-CAAA
10511564 AAGTATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 24 0.86
24 4 0.14
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (23 bp):
ACAAATATATAATGAAGCTTGTG
Found at i:10511597 original size:3 final size:3
Alignment explanation
Indices: 10511589--10511748 Score: 65
Period size: 3 Copynumber: 52.7 Consensus size: 3
10511579 CATAGTGATC
* * *
10511589 ATA ATA ATA ACTA AGA ATA ATA ATAA ATA ATC AT- ATA TTA ATA A-A
1 ATA ATA ATA A-TA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
** * * * * *
10511634 CGA ATA ATA GTA GTAA ATAA ATAA ATA AGA GTA ATA TTA ATA ATA ATA
1 ATA ATA ATA ATA AT-A AT-A AT-A ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * * **
10511682 ATG GTA GTA AAA ATA CTA ATA GTA ATA ACA GTA ATA ATA GTA ACG A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10511729 ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
10511749 TTGAAAATAT
Statistics
Matches: 116, Mismatches: 35, Indels: 12
0.71 0.21 0.07
Matches are distributed among these distances:
2 4 0.03
3 96 0.83
4 16 0.14
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:10511660 original size:21 final size:19
Alignment explanation
Indices: 10511636--10511740 Score: 72
Period size: 18 Copynumber: 5.4 Consensus size: 19
10511626 TTAATAAACG
10511636 AATAATAGTAGTAAATAAAT
1 AATAATAGTAGTAAAT-AAT
* *
10511656 AAATAAGAGTAATATTAATAAT
1 -AATAATAGTAGTA--AATAAT
*
10511678 AATAATGGTAGTAAA-AAT
1 AATAATAGTAGTAAATAAT
* * * *
10511696 ACTAATAGTAAT-AACAGT
1 AATAATAGTAGTAAATAAT
10511714 AATAATAGTAACG-AAATAAT
1 AATAATAGT-A-GTAAATAAT
10511734 AATAATA
1 AATAATA
10511741 ATAATAATTT
Statistics
Matches: 65, Mismatches: 13, Indels: 13
0.71 0.14 0.14
Matches are distributed among these distances:
17 2 0.03
18 22 0.34
19 3 0.05
20 11 0.17
21 21 0.32
22 3 0.05
23 3 0.05
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.29
Consensus pattern (19 bp):
AATAATAGTAGTAAATAAT
Found at i:10511798 original size:15 final size:16
Alignment explanation
Indices: 10511778--10511824 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
10511768 GAAAAGCAAG
10511778 AATTAAATAATA-AAT
1 AATTAAATAATACAAT
*
10511793 AATTAAATGATACAAT
1 AATTAAATAATACAAT
*
10511809 AAGATAAATATATACA
1 AA-TTAAATA-ATACA
10511825 TATACATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 11 0.42
16 5 0.19
17 5 0.19
18 5 0.19
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (16 bp):
AATTAAATAATACAAT
Found at i:10511849 original size:7 final size:7
Alignment explanation
Indices: 10511837--10511862 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10511827 TACATATATA
10511837 TAAAAAC
1 TAAAAAC
10511844 TAAAAAC
1 TAAAAAC
10511851 TAAAAAC
1 TAAAAAC
10511858 TAAAA
1 TAAAA
10511863 TATAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (7 bp):
TAAAAAC
Found at i:10511868 original size:14 final size:14
Alignment explanation
Indices: 10511834--10511869 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
10511824 ATATACATAT
10511834 ATATAAAAACTAAA
1 ATATAAAAACTAAA
10511848 A-ACTAAAAACTAAA
1 ATA-TAAAAACTAAA
10511862 ATATAAAA
1 ATATAAAA
10511870 TATAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 1 0.05
14 18 0.90
15 1 0.05
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.19
Consensus pattern (14 bp):
ATATAAAAACTAAA
Found at i:10511929 original size:4 final size:4
Alignment explanation
Indices: 10511920--10511945 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
10511910 AATAATGATG
10511920 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
10511946 AGGGAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:10519166 original size:20 final size:20
Alignment explanation
Indices: 10519141--10519182 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
10519131 CAAAATAAAC
10519141 TTTAATCAAAATAAGAGGCA
1 TTTAATCAAAATAAGAGGCA
10519161 TTTAATCAAAATAAGAGGCA
1 TTTAATCAAAATAAGAGGCA
10519181 TT
1 TT
10519183 CTCTCATAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.29
Consensus pattern (20 bp):
TTTAATCAAAATAAGAGGCA
Found at i:10519300 original size:23 final size:23
Alignment explanation
Indices: 10519269--10519315 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
10519259 ATATATATTG
*
10519269 TTAAATTTTTTTAATGTTAAATT
1 TTAAATTTTTATAATGTTAAATT
* * *
10519292 TTAATTTTTTATAATTTTATATT
1 TTAAATTTTTATAATGTTAAATT
10519315 T
1 T
10519316 ATCTTTACTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTAAATTTTTATAATGTTAAATT
Found at i:10522441 original size:3 final size:3
Alignment explanation
Indices: 10522435--10522475 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
10522425 ACTTTTACCA
10522435 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10522476 AGGAATTTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10529351 original size:11 final size:11
Alignment explanation
Indices: 10529299--10529358 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
10529289 TAGTAAAATT
*
10529299 TAAAGTAAAAA
1 TAAAATAAAAA
10529310 TAAAA-AAGAATA
1 TAAAATAA-AA-A
*
10529322 GAAAATAAAAGA
1 TAAAATAAAA-A
*
10529334 GTAAAATTAAAA
1 -TAAAATAAAAA
10529346 TAAAATAAAAA
1 TAAAATAAAAA
10529357 TA
1 TA
10529359 TAGGGACCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.05
11 18 0.46
12 9 0.23
13 10 0.26
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.18
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:10529737 original size:19 final size:19
Alignment explanation
Indices: 10529713--10529750 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10529703 TTTCCTTTGT
10529713 TTCTTTTTTTCTCTGAAGC
1 TTCTTTTTTTCTCTGAAGC
10529732 TTCTTTTTTTCTCTGAAGC
1 TTCTTTTTTTCTCTGAAGC
10529751 CACCCTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.21, G:0.11, T:0.58
Consensus pattern (19 bp):
TTCTTTTTTTCTCTGAAGC
Found at i:10530925 original size:94 final size:95
Alignment explanation
Indices: 10530797--10531264 Score: 486
Period size: 94 Copynumber: 5.0 Consensus size: 95
10530787 CAATTTCATT
* * * * * * *
10530797 TTGCTCCATTGCAACTTCAAGGAAATAAGATTCGTTGTTGTAATTTCAATCCGACCCACTGTAAC
1 TTGCTCTACTGCAACTTCAGGGAGATAAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAAC
10530862 TTCAAGGGTATAGGATTTGTAG-TCTC-ATC
66 TTCAAGGGTATAGGATTTGTAGCT-TCAATC
* * *
10530891 TTGCTC-ACTACAACTTCAGGGAGATAAAGATTCGTTATGGTAACTTCAATCTGACCCACTGCAA
1 TTGCTCTACTGCAACTTCAGGGAGAT-AAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAA
* * *
10530955 CTTCAGGGGTATAAGATTTGTAACTTCAATC
65 CTTCAAGGGTATAGGATTTGTAGCTTCAATC
* * * * *
10530986 -TACT-TCACCGCAACTTCAGGGAGATAAGATTCGCTATGGTAATTTCAATCCGACACACAGCAA
1 TTGCTCT-ACTGCAACTTCAGGGAGATAAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAA
*
10531049 CTTCAAAGGTATAGGATTTGTAGCTTCAAT-
65 CTTCAAGGGTATAGGATTTGTAGCTTCAATC
* * ** *
10531079 TTGCTCTACTGCAACTTTAGGGAGATAAGATTCATTATGGTAGA-TTCAATTTGACCCACTACAA
1 TTGCTCTACTGCAACTTCAGGGAGATAAGATTCGTTATGGTA-ATTTCAATCCGACCCACTGCAA
* * *
10531143 TTTCAGGGGTATAGGATCTGTAGCTTC-ATC
65 CTTCAAGGGTATAGGATTTGTAGCTTCAATC
* * ** * ** *
10531173 TTGCTCTACTGTAACTTCAGAGAGATAAGATTCACTATGGTGGA-CGCAATCTGACCCACTGCAA
1 TTGCTCTACTGCAACTTCAGGGAGATAAGATTCGTTATGGT-AATTTCAATCCGACCCACTGCAA
* * *
10531237 CTTTAAGGGTGTAAGATTTGTAGCTTCA
65 CTTCAAGGGTATAGGATTTGTAGCTTCA
10531265 TTGATCTGTT
Statistics
Matches: 310, Mismatches: 53, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
93 17 0.05
94 270 0.87
95 23 0.07
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (95 bp):
TTGCTCTACTGCAACTTCAGGGAGATAAGATTCGTTATGGTAATTTCAATCCGACCCACTGCAAC
TTCAAGGGTATAGGATTTGTAGCTTCAATC
Found at i:10530999 original size:44 final size:44
Alignment explanation
Indices: 10530930--10531016 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
10530920 ATTCGTTATG
*
10530930 GTAACTTCAATCTGACCCACTGCAACTTCAGGG-GTATAAGATTT
1 GTAACTTCAATCTGACCCACCGCAACTTCAGGGAG-ATAAGATTT
*
10530974 GTAACTTCAATCT-ACTTCACCGCAACTTCAGGGAGATAAGATT
1 GTAACTTCAATCTGAC-CCACCGCAACTTCAGGGAGATAAGATT
10531017 CGCTATGGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 2 0.05
44 36 0.92
45 1 0.03
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (44 bp):
GTAACTTCAATCTGACCCACCGCAACTTCAGGGAGATAAGATTT
Found at i:10547894 original size:50 final size:49
Alignment explanation
Indices: 10547788--10547980 Score: 188
Period size: 50 Copynumber: 3.7 Consensus size: 49
10547778 GGGAATAAGA
*
10547788 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCT-GGACATGGCATTGGCA-C--CGAG---ATGAGAGG
*
10547844 TCCCATGTAAGACCATGTCTGGTACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGG-ACATGGCATTGGCACCGAGATGAGAGG
** * * * **
10547894 TCCCCCGTAAGACCATGTCTAGGACATGGCATAGGCATCGATATGAGAAC
1 TCCCATGTAAGACCATGTCT-GGACATGGCATTGGCACCGAGATGAGAGG
* * *
10547944 TCCCATGTAAGACCATATCTGGGATATGACATTGGCA
1 TCCCATGTAAGACCATGTCT-GGACATGGCATTGGCA
10547981 GTACAGAAAA
Statistics
Matches: 118, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
50 77 0.65
51 2 0.02
53 3 0.03
55 3 0.03
56 33 0.28
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:10547979 original size:100 final size:102
Alignment explanation
Indices: 10547794--10547980 Score: 243
Period size: 100 Copynumber: 1.8 Consensus size: 102
10547784 AAGATCCCAT
* * **
10547794 GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCATGTAAGACCA
1 GTAAGACCATGTCTAGGACATGGCATAGGCATC----AGATTATGAGAACTCCCATGTAAGACCA
* * * *
10547859 TGTCTGGTACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
62 TATCTGGGACATGACATTGGCACCGAGATGAGAGGTCCCCC
10547900 GTAAGACCATGTCTAGGACATGGCATAGGCATC-GA-TATGAGAACTCCCATGTAAGACCATATC
1 GTAAGACCATGTCTAGGACATGGCATAGGCATCAGATTATGAGAACTCCCATGTAAGACCATATC
*
10547963 TGGGATATGACATTGGCA
66 TGGGACATGACATTGGCA
10547981 GTACAGAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
100 39 0.54
101 2 0.03
106 31 0.43
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (102 bp):
GTAAGACCATGTCTAGGACATGGCATAGGCATCAGATTATGAGAACTCCCATGTAAGACCATATC
TGGGACATGACATTGGCACCGAGATGAGAGGTCCCCC
Found at i:10548238 original size:4 final size:4
Alignment explanation
Indices: 10548229--10548267 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
10548219 ATGAGTTATT
* * *
10548229 TAAG TAAG TAAG TAAG TAAA CAAG TAAG TGAG TAAG TAA
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAA
10548268 AGAAGCGAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.51, C:0.03, G:0.23, T:0.23
Consensus pattern (4 bp):
TAAG
Found at i:10548255 original size:20 final size:20
Alignment explanation
Indices: 10548230--10548268 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
10548220 TGAGTTATTT
10548230 AAGTAAGTAAGTAAGTAAAC
1 AAGTAAGTAAGTAAGTAAAC
*
10548250 AAGTAAGTGAGTAAGTAAA
1 AAGTAAGTAAGTAAGTAAA
10548269 GAAGCGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.21
Consensus pattern (20 bp):
AAGTAAGTAAGTAAGTAAAC
Found at i:10551172 original size:382 final size:382
Alignment explanation
Indices: 10550466--10551230 Score: 1205
Period size: 382 Copynumber: 2.0 Consensus size: 382
10550456 TGTTCTGTTC
* **
10550466 ATGTAATCCACAGACTTAGGCGGATCGGTGTGACGAAGCCTTGCGGTAACCACGAGTTCATAAAC
1 ATGTAATCCACAGACTTAGGCGGATCGGTGTAACGAAGCCTCACGGTAACCACGAGTTCATAAAC
*
10550531 TATTAAAAATCGTGGATTTCATTTTTGTTAAGGTTTATTTCTTGGATTTTTGGAATAATTAGACT
66 TATTAAAAATCGTAGATTTCATTTTTGTTAAGGTTTATTTCTTGGATTTTTGGAATAATTAGACT
* * * *
10550596 TTCCAGATAGTTCGGATTTTGGGATTTATGTTTTAACATTTTATCTGCTACGGGTATTCAAAACG
131 CTCCAGATAGTTCGGATTTTAGGATTTATGTTTTAACATTTTATCTGCGACGGGTATTAAAAACG
* * *
10550661 TGGCTTTTACTAAAACAAAGTTTTTCCAAAAATATGAATGCGATTTCCAAAAATAACGTTTTCTA
196 TAGCTTTTACTAAAACAAAGTTTTTCCAAAAATATGAATACGATTTCCAAAAATAACATTTTCTA
* * *
10550726 TGACTTTCGCTATAAATTACATTTTGGCAAATCAAATAATGAAATAACACTTCCGATAAATTGAT
261 TGACTTTCACTATAAACTACATTTTGGCAAATCAAATAATGAAATAACACTTCCGAAAAATTGAT
*
10550791 ATAAATAATTATGGGTTACAAAATTTGGATGGTTTACCGAACAACTTTACAAGTTTT
326 ATAAATAATTATGGGTTACAAAAATTGGATGGTTTACCGAACAACTTTACAAGTTTT
*
10550848 ATGTAATCCACAGACTTAGGCGGATCGGTGTAACGAAGCCTCACGGTGACCACGAGTTCATAAAC
1 ATGTAATCCACAGACTTAGGCGGATCGGTGTAACGAAGCCTCACGGTAACCACGAGTTCATAAAC
* * *
10550913 TATTAAATATCGTAGATTTTATTTTTGTTAAGGTTTATTT-TTGGGATTTTTGGAATAATTGGAC
66 TATTAAAAATCGTAGATTTCATTTTTGTTAAGGTTTATTTCTT-GGATTTTTGGAATAATTAGAC
* *
10550977 TCTCCGGACT-GTTTGGATTTTAGGATTTATGTTTTAACATTTTATCTGCGACGGGTATTAAAAA
130 TCTCCAGA-TAGTTCGGATTTTAGGATTTATGTTTTAACATTTTATCTGCGACGGGTATTAAAAA
* *
10551041 CGTAGTTTTTA-TAAAACAAAGGTTTTT-TAAAAATATGAATACGATTTCCAAAAATAACATTTT
194 CGTAGCTTTTACTAAAACAAA-GTTTTTCCAAAAATATGAATACGATTTCCAAAAATAACATTTT
* *
10551104 CTATGACTTTCACTGTAAACTACGTTTTGGCAAATCAAATAATGAAATAACACTTCCGAAAAAAT
258 CTATGACTTTCACTATAAACTACATTTTGGCAAATCAAATAATGAAATAACACTTCCG-AAAAAT
* * * *
10551169 TGATATACATAATTATGGGTTTCAAAAATTGGATGGTTTATCGAACAACTTTATAAGTTTT
322 TGATATAAATAATTATGGGTTACAAAAATTGGATGGTTTACCGAACAACTTTACAAGTTTT
10551230 A
1 A
10551231 CTGAAATAAC
Statistics
Matches: 350, Mismatches: 29, Indels: 8
0.90 0.07 0.02
Matches are distributed among these distances:
381 98 0.28
382 251 0.72
383 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (382 bp):
ATGTAATCCACAGACTTAGGCGGATCGGTGTAACGAAGCCTCACGGTAACCACGAGTTCATAAAC
TATTAAAAATCGTAGATTTCATTTTTGTTAAGGTTTATTTCTTGGATTTTTGGAATAATTAGACT
CTCCAGATAGTTCGGATTTTAGGATTTATGTTTTAACATTTTATCTGCGACGGGTATTAAAAACG
TAGCTTTTACTAAAACAAAGTTTTTCCAAAAATATGAATACGATTTCCAAAAATAACATTTTCTA
TGACTTTCACTATAAACTACATTTTGGCAAATCAAATAATGAAATAACACTTCCGAAAAATTGAT
ATAAATAATTATGGGTTACAAAAATTGGATGGTTTACCGAACAACTTTACAAGTTTT
Found at i:10563006 original size:6 final size:6
Alignment explanation
Indices: 10562995--10563021 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10562985 TTTAATATTT
10562995 TAAATA TAAATA TAAATA TAAATA TAA
1 TAAATA TAAATA TAAATA TAAATA TAA
10563022 TAAAAGAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
TAAATA
Found at i:10570048 original size:3 final size:3
Alignment explanation
Indices: 10570040--10570068 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10570030 AAACCAACAG
10570040 CAC CAC CAC CAC CAC CAC CAC CAC CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CA
10570069 TCTCCATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.66, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:10573269 original size:24 final size:23
Alignment explanation
Indices: 10573225--10573269 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
10573215 CAATGAAGAA
* *
10573225 AACGTGAATAAATAATTAAAAGG
1 AACGTGAAAAAATAATAAAAAGG
*
10573248 AACGTGAACAAAATTATAAAAA
1 AACGTGAA-AAAATAATAAAAA
10573270 TACAAGAGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 8 0.44
24 10 0.56
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (23 bp):
AACGTGAAAAAATAATAAAAAGG
Found at i:10573348 original size:37 final size:39
Alignment explanation
Indices: 10573288--10573413 Score: 116
Period size: 39 Copynumber: 3.2 Consensus size: 39
10573278 TATAAATATG
* *
10573288 TATATATGTATGCATATGGAAATTAT-AAA-GTATATAAAA
1 TATATATGTAT--ATATAGAAATTATAAAATATATATAAAA
* *
10573327 TATATATGTATATATATAAATTGTAAAATATATATAAAA
1 TATATATGTATATATAGAAATTATAAAATATATATAAAA
* *
10573366 AATATATGTGTATAT-G-AATTATAAAAAAATATATATATAAA
1 TATATATGTATATATAGAAATTAT---AAAATATATATA-AAA
10573407 TATATAT
1 TATATAT
10573414 ATATGTAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
37 15 0.21
38 3 0.04
39 33 0.46
40 12 0.17
41 9 0.12
ACGTcount: A:0.52, C:0.01, G:0.08, T:0.39
Consensus pattern (39 bp):
TATATATGTATATATAGAAATTATAAAATATATATAAAA
Found at i:10573406 original size:16 final size:16
Alignment explanation
Indices: 10573385--10573424 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
10573375 GTATATGAAT
10573385 TATAAAAAAATATATA
1 TATAAAAAAATATATA
* *
10573401 TATAAATATATATATA
1 TATAAAAAAATATATA
*
10573417 TGTAAAAA
1 TATAAAAA
10573425 TGGTATATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
TATAAAAAAATATATA
Found at i:10573407 original size:12 final size:12
Alignment explanation
Indices: 10573392--10573416 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10573382 AATTATAAAA
10573392 AAATATATATAT
1 AAATATATATAT
10573404 AAATATATATAT
1 AAATATATATAT
10573416 A
1 A
10573417 TGTAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AAATATATATAT
Found at i:10574485 original size:13 final size:12
Alignment explanation
Indices: 10574463--10574498 Score: 56
Period size: 13 Copynumber: 3.0 Consensus size: 12
10574453 TTTCCGTATG
10574463 TAAAAAATAAAA
1 TAAAAAATAAAA
10574475 TAAATAAATAAAA
1 TAAA-AAATAAAA
10574488 T-AAAAATAAAA
1 TAAAAAATAAAA
10574499 GTAGACTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.35
12 6 0.26
13 9 0.39
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
TAAAAAATAAAA
Found at i:10575105 original size:6 final size:6
Alignment explanation
Indices: 10575087--10575124 Score: 67
Period size: 6 Copynumber: 6.2 Consensus size: 6
10575077 TTTTAAACTA
10575087 ATAATT ATAAATT ATAATT ATAATT ATAATT ATAATT A
1 ATAATT AT-AATT ATAATT ATAATT ATAATT ATAATT A
10575125 CTACAACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
ATAATT
Found at i:10581704 original size:21 final size:22
Alignment explanation
Indices: 10581679--10581721 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
10581669 ACGGCGAAAT
10581679 ATACACAA-AAAAACAA-TCAAA
1 ATACACAATAAAAA-AATTCAAA
*
10581700 ATACAGAATAAAAAAATTCAAA
1 ATACACAATAAAAAAATTCAAA
10581722 GGTGATCCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.70, C:0.14, G:0.02, T:0.14
Consensus pattern (22 bp):
ATACACAATAAAAAAATTCAAA
Found at i:10585581 original size:19 final size:19
Alignment explanation
Indices: 10585557--10585595 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
10585547 TAAGGCCGTA
* *
10585557 TATGTAAATATATTTGTTT
1 TATGTAAAGAGATTTGTTT
10585576 TATGTAAAGAGATTTGTTT
1 TATGTAAAGAGATTTGTTT
10585595 T
1 T
10585596 CTATTAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (19 bp):
TATGTAAAGAGATTTGTTT
Found at i:10592230 original size:19 final size:19
Alignment explanation
Indices: 10592206--10592243 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10592196 TCATCATAAT
10592206 TCATAAACTTTTAATACTA
1 TCATAAACTTTTAATACTA
10592225 TCATAAACTTTTAATACTA
1 TCATAAACTTTTAATACTA
10592244 ACATTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (19 bp):
TCATAAACTTTTAATACTA
Found at i:10593055 original size:23 final size:24
Alignment explanation
Indices: 10593011--10593056 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
10593001 TTTCTCACAT
* **
10593011 TTTCAATTCAATCATTTTTCCACC
1 TTTCAATTCAATAATTAATCCACC
10593035 TTTCAA-TCAATAATTAATCCAC
1 TTTCAATTCAATAATTAATCCAC
10593057 AAATTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTCAATTCAATAATTAATCCACC
Found at i:10593653 original size:16 final size:18
Alignment explanation
Indices: 10593632--10593665 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
10593622 CTTATAGTTT
10593632 CTTTTA-CAATT-TAATC
1 CTTTTATCAATTCTAATC
10593648 CTTTTATCAATTCTAATC
1 CTTTTATCAATTCTAATC
10593666 AAAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 5 0.31
18 5 0.31
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (18 bp):
CTTTTATCAATTCTAATC
Found at i:10594014 original size:5 final size:5
Alignment explanation
Indices: 10593965--10594002 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
10593955 ATTTGCTTTC
10593965 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
10594003 ACTTTATGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:10594333 original size:21 final size:21
Alignment explanation
Indices: 10594309--10594351 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10594299 AATAATAACT
10594309 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
10594330 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
10594351 A
1 A
10594352 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:10594452 original size:3 final size:3
Alignment explanation
Indices: 10594444--10594506 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
10594434 TTACTTTATT
** **
10594444 TAA TAA TAA TAA TAA TAA T-A TAA -AA CCA TAA TAA TGGT TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
*
10594488 TTA TAA TAA TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TAA TA
10594507 TTTATGTATA
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
2 6 0.13
3 40 0.85
4 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10596673 original size:44 final size:44
Alignment explanation
Indices: 10596610--10597303 Score: 541
Period size: 44 Copynumber: 15.6 Consensus size: 44
10596600 TATCATTGAG
* **
10596610 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* * * *
10596654 AATCTTATCTCCCTAAAGTTACAATGGAGCAGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATA-CA
* *
10596699 AATCTTATCTCTCTGAAGTTGCCA-TAGAGCAGATTAAAGATACA
1 AATCTTATCTCCCTGAAGTTG-CAGTGGAGCAGATTAAAGATACA
* * * * * *
10596743 AACCTTATCTCTCTGAAATTGCAGTGGAACAGATTGAA-ATGGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAT-ACA
* ** * *
10596787 ATTCTTATCTCCCTGGGGTTGCAGTGGAGTAGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* * * *
10596831 AATCTTATTTCCCTGAAGCTGCAGTGGAACAGATTAAAGCTACAAATTTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATAC------A
* * * * * * * *
10596881 AATCTTATCTCCATAAAGTTACAGTAGAGTAGATTGAATATACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* * * *
10596925 AGTCTCATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* * * * *
10596969 AACCTTATCTCCCTGAAGTTGCAGTAGAGCTGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* ** * * * *
10597013 AATCTCATCTCCCTGAAGTTATAGTGAAGTAGATTGAAGATACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* * * * * *
10597057 AGTCTCATCTTCTTAAAGTTGCAGTGGAGCAGATTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* * * * * *
10597101 AACCTTAGCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* * * * * *
10597145 AATCTCATCTCCCTGAAGTTGTAGTGAAGTAGATTGAAGATACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* * * * *
10597189 AGTCTCATCTCCCAGAAGTTGCAGTGGAGCAGATTGAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
* * * * * * *
10597233 AGTCTAATCTCCCTGAAGTTACAATAGAGTAGATTGAAGCA-ACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-ATACA
* *
10597277 AATCCTATAC-CTCTGAAGTTGCAGTGG
1 AATCTTAT-CTCCCTGAAGTTGCAGTGG
10597304 GTTAGAATGA
Statistics
Matches: 511, Mismatches: 126, Indels: 26
0.77 0.19 0.04
Matches are distributed among these distances:
43 4 0.01
44 434 0.85
45 38 0.07
46 2 0.00
50 33 0.06
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATACA
Found at i:10598996 original size:15 final size:16
Alignment explanation
Indices: 10598964--10598998 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
10598954 TATTTATTCA
10598964 TTTATTTATTACTTTT
1 TTTATTTATTACTTTT
*
10598980 TTTATTT-TTATTTTT
1 TTTATTTATTACTTTT
10598995 TTTA
1 TTTA
10598999 CATATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTATTTATTACTTTT
Found at i:10603971 original size:35 final size:35
Alignment explanation
Indices: 10603930--10604001 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
10603920 CTATTAAATA
*
10603930 ATTTAATTTTTTGCTAAATCCGTTAAGAGAGAATG
1 ATTTAATTTTTTGCTAAATCCATTAAGAGAGAATG
* *
10603965 ATTTAATTTTTTGCTAACTCCATTAAGAGATAATG
1 ATTTAATTTTTTGCTAAATCCATTAAGAGAGAATG
10604000 AT
1 AT
10604002 GTGGCATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.42
Consensus pattern (35 bp):
ATTTAATTTTTTGCTAAATCCATTAAGAGAGAATG
Found at i:10610513 original size:45 final size:44
Alignment explanation
Indices: 10610360--10611299 Score: 561
Period size: 44 Copynumber: 20.8 Consensus size: 44
10610350 TAGTAGATTT
* **
10610360 AATCTGAC-CCACTGCAACTTCAAAG-GTATAAGATTTGTCGCTTC
1 AATCTG-CTCCACTGCAACTTCAGAGAG-ATAAGATTTGTAACTTC
* * * ***
10610404 AATCTACTTCACTGCAACTTCAGGGAGATAAGGCCTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTC
* * *
10610448 AATCTGCTCCACTGCAACTTCAGATAGATAAGCTTCAT-TACCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATT--TGTAACTTC
* *
10610493 AATCTGCTCCACTGCCACTTCAGGGAGATAAGATTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTC
* *
10610537 AATCTGCTCCACTTCAACTTCA-AGGAGATAAGATTTATAACTCGTAGC
1 AATCTGCTCCACTGCAACTTCAGA-GAGATAAGATTTGTAACT--T--C
* * * * * * * *
10610585 TTTAATCTGTTCCACTGTAACTTTAGGGAAATGAGATTAGCTATCTTC
1 ---AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAACTTC
* * * * * *
10610633 AATCTGCTCCACTTCAACTTCAGGGAAATGAGATTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTC
* * *
10610677 AA-CTTGCTCCAATGCAACTTCAG-GAAGATGAA-ATTTGTGACTTT
1 AATC-TGCTCCACTGCAACTTCAGAG-AGAT-AAGATTTGTAACTTC
* ** * *
10610721 AACCTTTTCCACTGTC-ACTTCAGAG-GCATAGAATTTGTGACTTGTAACTTT
1 AATCTGCTCCACTG-CAACTTCAGAGAG-AT--AA-----GATTTGTAACTTC
** * * * * * * * *
10610772 AATCTATTCCATTGTAACTTTAGGGAAATAAGATTCGCATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTC
* * * * * *
10610816 AACCTGCTCCATTGCAACTTCAGGGAGATAAGATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTC
* * * *
10610860 AATCTACTCTACTGCAACTTCAGAAAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAACTTC
* * * *
10610905 AATCT-TTCCATTGCAATTTCA-AGGAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGA-GAGATAAGATTTG-TAACTTC
* ** * *
10610949 AATATTTTCCACTGCAACTTCAGAGAGATAAGATTTATAACTTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTC
* * *
10610993 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCCTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAACTTC
** * * *
10611038 AATCTGCTCCACTGCAGTTTCAGGGAGATAAGATTTATAACTTT
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTC
* *
10611082 AATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAACTTC
* ** * * * *
10611127 AATCTGCTCTACTATAGCTTCAGGGAGATAAGATTTATATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTC
* * * * * *
10611171 AATCTACCCCAGTGCCACTTCAGGGAGATAATATTTGTAACTTGTAGC
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAAC-T-T--C
* * * * ** * *
10611219 TTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTATCTTT
1 ---AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG-TAACTTC
* *
10611267 AATCTACTCCACTGCAACTTCAGGGAGATAAGA
1 AATCTGCTCCACTGCAACTTCAGAGAGATAAGA
10611300 CTTGCATCTT
Statistics
Matches: 699, Mismatches: 152, Indels: 89
0.74 0.16 0.09
Matches are distributed among these distances:
43 6 0.01
44 374 0.54
45 216 0.31
46 4 0.01
48 3 0.00
49 2 0.00
50 2 0.00
51 85 0.12
52 7 0.01
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTC
Found at i:10610564 original size:133 final size:132
Alignment explanation
Indices: 10610360--10611389 Score: 664
Period size: 133 Copynumber: 7.6 Consensus size: 132
10610350 TAGTAGATTT
* * ** * *
10610360 AATCTGAC-CCACTGCAACTTCAAAGG-TATAAGATTTGTCGCTTCAATCTACTTCACTGCAACT
1 AATCTG-CTCCACTGCAACTTC-AGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACT
*** * * * * *
10610423 TCAGGGAGATAAGGCCTGTAACTTCAATCTGCTCCACTGCAACTTCAGATAGATAAGCTTCATTA
64 TCA-GGAGATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTACTA
*
10610488 CCTTC
128 TCTTC
* *
10610493 AATCTGCTCCACTGCCACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTTCAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTC
* * * * * * *
10610558 AAGGAGATAAGATTTATAACTCGTAGCTTTAATCTGTTCCACTGTAACTTTAGGGAAATGAGA-T
66 -AGGAGATAAGA--T-T---T-GTAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATT
10610622 TAGCTATCTTC
123 TA-CTATCTTC
* * * * * *
10610633 AATCTGCTCCACTTCAACTTCAGGGAAATGAGATTTGTAGCTTTAA-CTTGCTCCAATGCAACTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAATC-TGCTCCACTGCAACTT
* * **
10610697 CAGGAAGATGAA-ATTTGTGACTTTAACCTTTTCCACTGTC-ACTTCAGAG-GCAT-AGAATTTG
65 CAGG-AGAT-AAGATTTGTAACTTTAATCTGCTCCACTG-CAACTTCAGAGAG-ATAAG-A-TT-
* *
10610758 TGACTTGTAACTTT
123 T-AC---TATCTTC
** * * * * * * * * *
10610772 AATCTATTCCATTGTAACTTTAGGGAAATAAGATTCGCATCTTCAACCTGCTCCATTGCAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTC
* * * * * *
10610837 AGGGAGATAAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAGAAAGATAAGATTTGCTATC
66 A-GGAGATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTACTATC
10610902 TTC
130 TTC
* * * * * * **
10610905 AATCT-TTCCATTGCAATTTCAAGGAGATAAGATTTGCTATCTTCAATATTTTCCACTGCAACTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTCAATCTGCTCCACTGCAACTT
* * *
10610969 CAGAGAGATAAGATTTATAACTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTAT
65 CAG-GAGATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTACTAT
*
10611034 CCTC
129 CTTC
** * * *
10611038 AATCTGCTCCACTGCAGTTTCAGGGAGATAAGATTTATAACTTTAATCTGCTCTACTGCAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTC
* * * ** * *
10611103 AGAGAGATAAGATTTGCTATCTTCAATCTGCTCTACTATAGCTTCAGGGAGATAAGATTTA-TAT
66 AG-GAGATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTACTAT
10611167 CTTC
129 CTTC
* * * * * * *
10611171 AATCTACCCCAGTGCCACTTCAGGGAGATAATATTTGTAACTTGTAGCTTTAATTTGTTCCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAAC-T-T--C---AATCTGCTCCACTG
* ** * * * *
10611236 CAACTTCAGGGAAATAAGATCCGCTATCTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGAC
59 CAACTTCA-GGAGATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGAT
* *
10611301 TTGC-ATCTTT
122 TTACTATCTTC
* * * * * ** ** * *
10611311 AATATACTCTACAT-CAACTTCAGGGAGATGAA-ATTTGTGACTTTAAAATTTTCCATTGGAACT
1 AATCTGCTCCAC-TGCAACTTCAGGGAGAT-AAGATTTGTAACTTCAATCTGCTCCACTGCAACT
10611374 TCAGGCAGATAAGATT
64 TCAGG-AGATAAGATT
10611390 CGCCACGGTA
Statistics
Matches: 712, Mismatches: 139, Indels: 92
0.76 0.15 0.10
Matches are distributed among these distances:
132 34 0.05
133 288 0.40
134 66 0.09
135 2 0.00
136 3 0.00
137 3 0.00
138 7 0.01
139 99 0.14
140 204 0.29
141 6 0.01
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (132 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTC
AGGAGATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTACTATCT
TC
Found at i:10610566 original size:89 final size:89
Alignment explanation
Indices: 10610360--10611299 Score: 526
Period size: 89 Copynumber: 10.4 Consensus size: 89
10610350 TAGTAGATTT
* * * * * *
10610360 AATCTGAC-CCACTGCAACTTCAAAGG-TATAAGATTT-GTCGCTTCAATCTACTTCACTGCAAC
1 AATCTG-CTCCACTTCAACTTC-AAGGAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAAC
***
10610422 TTCAGGGAGATAAGGCCTGTAACTTC
64 TTCAGGGAGATAAGATTTGTAACTTC
* * * * * *
10610448 AATCTGCTCCACTGCAACTTC-AGATAGATAAGCTTCATTACCTTCAATCTGCTCCACTGCCACT
1 AATCTGCTCCACTTCAACTTCAAG-GAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACT
10610512 TCAGGGAGATAAGATTTGTAACTTC
65 TCAGGGAGATAAGATTTGTAACTTC
* *
10610537 AATCTGCTCCACTTCAACTTCAAGGAGATAAGATTTATAACTCGTAGCTTTAATCTGTTCCACTG
1 AATCTGCTCCACTTCAACTTCAAGGAGATAAGA-TT-T-A-T--TAGCTTCAATCTGCTCCACTG
* * * * * *
10610602 TAACTTTAGGGAAATGAGATTAGCTATCTTC
60 CAACTTCAGGGAGATAAGATTTG-TAACTTC
* * * * * *
10610633 AATCTGCTCCACTTCAACTTCAGGGAAATGAGATTT-GTAGCTTTAA-CTTGCTCCAATGCAACT
1 AATCTGCTCCACTTCAACTTCAAGGAGATAAGATTTATTAGCTTCAATC-TGCTCCACTGCAACT
* * *
10610696 TCAGGAAGATGAA-ATTTGTGACTTT
65 TCAGGGAGAT-AAGATTTGTAACTTC
* ** * * * **
10610721 AACCTTTTCCACTGTC-ACTTCAGAGG-CAT-AGAATTTGTGACTTGTAACTTTAATCTATTCCA
1 AATCTGCTCCACT-TCAACTTCA-AGGAGATAAG-A-TT-T-A--T-TAGCTTCAATCTGCTCCA
* * * * * * *
10610783 TTGTAACTTTAGGGAAATAAGATTCGCATCTTC
57 CTGCAACTTCAGGGAGATAAGATTTGTAACTTC
* * * * *
10610816 AACCTGCTCCA-TTGCAACTTCAGGGAGATAAGATTTA-TAGCTTTAATCTACTCTACTGCAACT
1 AATCTGCTCCACTT-CAACTTCAAGGAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACT
** *
10610879 TCAGAAAGATAAGATTTGCTATCTTC
65 TCAGGGAGATAAGATTTG-TAACTTC
* * ** * * **
10610905 AATCT-TTCCA-TTGCAATTTCAAGGAGATAAGATTTGCTATCTTCAATATTTTCCACTGCAACT
1 AATCTGCTCCACTT-CAACTTCAAGGAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACT
* * *
10610968 TCAGAGAGATAAGATTTATAACTTT
65 TCAGGGAGATAAGATTTGTAACTTC
* * ** * * **
10610993 AATCTGCTCTACTGCAACTTC-AGAGAGATAAGATTTGCTATCCTCAATCTGCTCCACTGCAGTT
1 AATCTGCTCCACTTCAACTTCAAG-GAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACT
* *
10611057 TCAGGGAGATAAGATTTATAACTTT
65 TCAGGGAGATAAGATTTGTAACTTC
* * ** * * ** *
10611082 AATCTGCTCTACTGCAACTTC-AGAGAGATAAGATTTGCTATCTTCAATCTGCTCTACTATAGCT
1 AATCTGCTCCACTTCAACTTCAAG-GAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACT
* *
10611146 TCAGGGAGATAAGATTTATATCTTC
65 TCAGGGAGATAAGATTTGTAACTTC
* * * * * * * * * *
10611171 AATCTACCCCAGTGCCACTTCAGGGAGATAATATTTGTAACTTGTAGCTTTAATTTGTTCCACTG
1 AATCTGCTCCACTTCAACTTCAAGGAGATAAGA-TT-T-A--T-TAGCTTCAATCTGCTCCACTG
* ** * *
10611236 CAACTTCAGGGAAATAAGATCCGCTATCTTT
60 CAACTTCAGGGAGATAAGATTTG-TAACTTC
* * *
10611267 AATCTACTCCACTGCAACTTCAGGGAGATAAGA
1 AATCTGCTCCACTTCAACTTCAAGGAGATAAGA
10611300 CTTGCATCTT
Statistics
Matches: 674, Mismatches: 135, Indels: 78
0.76 0.15 0.09
Matches are distributed among these distances:
86 2 0.00
87 3 0.00
88 123 0.18
89 327 0.49
90 10 0.01
91 1 0.00
92 2 0.00
93 3 0.00
94 9 0.01
95 120 0.18
96 74 0.11
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (89 bp):
AATCTGCTCCACTTCAACTTCAAGGAGATAAGATTTATTAGCTTCAATCTGCTCCACTGCAACTT
CAGGGAGATAAGATTTGTAACTTC
Found at i:10611331 original size:140 final size:140
Alignment explanation
Indices: 10611078--10611353 Score: 315
Period size: 140 Copynumber: 2.0 Consensus size: 140
10611068 AGATTTATAA
* * ** * * *
10611078 CTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCTACTATA
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAAATAAGATCCGCTATCTTCAATCTACTCCACTACA
* * * * * *
10611143 GCTTCAGGGAGATAAGATTTATATCTTCAATCTACCCCAGTGCCACTTCAGGGAGAT-AATATTT
66 ACTTCAGGGAGATAAGACTTACATCTTCAATATACCACAGTGCAACTTCAGGGAGATGAA-ATTT
10611207 GTAACTTGTAG
130 GTAACTTGTAG
* * * * *
10611218 CTTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTATCTTTAATCTACTCCACTGCA
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAAATAAGATCCGCTATCTTCAATCTACTCCACTACA
* *
10611283 ACTTCAGGGAGATAAGACTTGCATCTTTAATATACTCTACA-T-CAACTTCAGGGAGATGAAATT
66 ACTTCAGGGAGATAAGACTTACATCTTCAATATAC-C-ACAGTGCAACTTCAGGGAGATGAAATT
*
10611346 TGTGACTT
129 TGTAACTT
10611354 TAAAATTTTC
Statistics
Matches: 112, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
140 106 0.95
141 4 0.04
142 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (140 bp):
CTTTAATCTGCTCCACTGCAACTTCAGAGAAATAAGATCCGCTATCTTCAATCTACTCCACTACA
ACTTCAGGGAGATAAGACTTACATCTTCAATATACCACAGTGCAACTTCAGGGAGATGAAATTTG
TAACTTGTAG
Found at i:10611356 original size:44 final size:44
Alignment explanation
Indices: 10611229--10611339 Score: 145
Period size: 44 Copynumber: 2.5 Consensus size: 44
10611219 TTTAATTTGT
* * *
10611229 TCCACTGCAACTTCAGGGAAATAAGA-TCCGCTATCTTTAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACT-TGC-ATCTTTAATATAC
10611274 TCCACTGCAACTTCAGGGAGATAAGACTTGCATCTTTAATATAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCATCTTTAATATAC
*
10611318 TCTACAT-CAACTTCAGGGAGAT
1 TCCAC-TGCAACTTCAGGGAGAT
10611340 GAAATTTGTG
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
44 31 0.52
45 28 0.47
46 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGCATCTTTAATATAC
Found at i:10619366 original size:19 final size:20
Alignment explanation
Indices: 10619342--10619384 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
10619332 GTCTTTTTTG
* *
10619342 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCACATGAA
10619361 TGAAATGTAATGCACATGAA
1 TGAAATGTAATGCACATGAA
10619381 TGAA
1 TGAA
10619385 TGCAAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (20 bp):
TGAAATGTAATGCACATGAA
Found at i:10623261 original size:15 final size:16
Alignment explanation
Indices: 10623236--10623265 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10623226 GTAAATGGAC
10623236 TATTGTATTTGGTTTT
1 TATTGTATTTGGTTTT
10623252 TATT-TATTTGGTTT
1 TATTGTATTTGGTTT
10623266 GGTTTGGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.00, G:0.17, T:0.70
Consensus pattern (16 bp):
TATTGTATTTGGTTTT
Found at i:10624334 original size:21 final size:22
Alignment explanation
Indices: 10624305--10624345 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
10624295 TCCCTCAAAC
10624305 TTTTATTCCCCAAAACTTTTTA
1 TTTTATTCCCCAAAACTTTTTA
10624327 TTTT-TTCCCCAAAACTTTT
1 TTTTATTCCCCAAAACTTTT
10624346 ACTTCTCACC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTATTCCCCAAAACTTTTTA
Found at i:10628854 original size:6 final size:6
Alignment explanation
Indices: 10628843--10628868 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
10628833 CAAAGAACCC
10628843 CACCAT CACCAT CACCAT CACCAT CA
1 CACCAT CACCAT CACCAT CACCAT CA
10628869 TCAGCATGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.50, G:0.00, T:0.15
Consensus pattern (6 bp):
CACCAT
Found at i:10636011 original size:47 final size:47
Alignment explanation
Indices: 10635733--10636004 Score: 184
Period size: 46 Copynumber: 5.9 Consensus size: 47
10635723 TAAAGCCCTA
* * ** **
10635733 TTTAAGTACTGCAATTTTAAGTGTTTAGTTACTGGAAATTG-AGATGT
1 TTTAAGTACTGCAAATTGAAGTGTTTAAATGTTGGAAATTGAAG-TGT
* * * ** *
10635780 TTT-ATTACTG-TAATT-AAGGTGTATAAATGTTGTTAATAG-AGATG-
1 TTTAAGTACTGCAAATTGAA-GTGTTTAAATGTTGGAAATTGAAG-TGT
* * * *
10635824 TTAAAGTGCTGCAAATTGAAGTGTTTAAATTTTGTAAATTGAAGTG-
1 TTTAAGTACTGCAAATTGAAGTGTTTAAATGTTGGAAATTGAAGTGT
* ** * * **
10635870 TTAAAGTGTTACAAATTGAAGTATTTAAATACTGTG-AATTGAAGTG-
1 TTTAAGTACTGCAAATTGAAGTGTTTAAATGTTG-GAAATTGAAGTGT
* * *
10635916 TTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGT
1 TTTAAGTACTGCAAATTGAAGTGTTTAAATGTTGGAAATTGAAGTGT
* **
10635963 TTTAAGTACTGCAAATTGAATTGTTTAGTTGTTGGAAATTGA
1 TTTAAGTACTGCAAATTGAAGTGTTTAAATGTTGGAAATTGA
10636005 GATGTTTATC
Statistics
Matches: 180, Mismatches: 37, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
44 4 0.02
45 26 0.14
46 107 0.59
47 43 0.24
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.40
Consensus pattern (47 bp):
TTTAAGTACTGCAAATTGAAGTGTTTAAATGTTGGAAATTGAAGTGT
Found at i:10636100 original size:23 final size:23
Alignment explanation
Indices: 10635824--10636149 Score: 200
Period size: 23 Copynumber: 14.2 Consensus size: 23
10635814 AATAGAGATG
*
10635824 TTAAAGTGCTGCAAATTGAAGTGT
1 TTAAA-TGCTGTAAATTGAAGTGT
**
10635848 TTAAATTTTGTAAATTGAAGTG-
1 TTAAATGCTGTAAATTGAAGTGT
* ** *
10635870 TTAAAGTGTTACAAATTGAAGTAT
1 TTAAA-TGCTGTAAATTGAAGTGT
* *
10635894 TTAAATACTGTGAATTGAAGTG-
1 TTAAATGCTGTAAATTGAAGTGT
*
10635916 TTAAAGTGCTGCAAATTGAAGTGT
1 TTAAA-TGCTGTAAATTGAAGTGT
*
10635940 TTAAATGTTGTAAATTGAAGTGTT
1 TTAAATGCTGTAAATTGAAGTG-T
* * * *
10635964 TTAAGTACTGCAAATTGAATTGT
1 TTAAATGCTGTAAATTGAAGTGT
** * *
10635987 TTAGTTGTTGGAAATTG-AGATGT
1 TTAAATGCTGTAAATTGAAG-TGT
* *
10636010 TT--ATCGTTGT-AATTGAGGTGT
1 TTAAAT-GCTGTAAATTGAAGTGT
* * * *
10636031 ATAAATGTTGTTAATTG-GGATG-
1 TTAAATGCTGTAAATTGAAG-TGT
* * *
10636053 TTAAAGTGTTGTAAGTTGAGGTGT
1 TTAAA-TGCTGTAAATTGAAGTGT
* *
10636077 TTAAATGCTGTAAACTGAAATGT
1 TTAAATGCTGTAAATTGAAGTGT
* * * *
10636100 TTAATTGCTATAAATTGAGGTGC
1 TTAAATGCTGTAAATTGAAGTGT
* *
10636123 TCAAATGATGTAAATTGAAGTGT
1 TTAAATGCTGTAAATTGAAGTGT
10636146 TTAA
1 TTAA
10636150 GTACTACAAA
Statistics
Matches: 233, Mismatches: 54, Indels: 31
0.73 0.17 0.10
Matches are distributed among these distances:
21 10 0.04
22 27 0.12
23 156 0.67
24 40 0.17
ACGTcount: A:0.33, C:0.04, G:0.23, T:0.40
Consensus pattern (23 bp):
TTAAATGCTGTAAATTGAAGTGT
Found at i:10636100 original size:46 final size:46
Alignment explanation
Indices: 10635798--10636162 Score: 268
Period size: 46 Copynumber: 8.0 Consensus size: 46
10635788 TGTAATTAAG
* * * *
10635798 GTGTATAAATGTTGTTAATAGAGATGTTAAAGTGCTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAA
* * * *
10635844 GTGTTTAAATTTTGTAAATTGAAGTGTTAAAGTGTTACAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAA
* ** * *
10635890 GTATTTAAATACTGTGAATTGAAGTGTTAAAGTGCTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAA
* * *
10635936 GTGTTTAAATGTTGTAAATTGAAGTGTTTTAAGTACTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAATG-TTAAAGTGCTGCAAATTGAA
* ** * * * * * *
10635983 TTGTTTAGTTGTTGGAAATTGAGATGTT-TA-TCGTTG-TAATTGAG
1 GTGTTTAAATGTTGTAAATTGAAATGTTAAAGT-GCTGCAAATTGAA
* * ** * * * *
10636027 GTGTATAAATGTTGTTAATTGGGATGTTAAAGTGTTGTAAGTTGAG
1 GTGTTTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAA
* * * * ** *
10636073 GTGTTTAAATGCTGTAAACTGAAATGTTTAATTGCTATAAATTGAG
1 GTGTTTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAA
* * * * * * *
10636119 GTGCTCAAATGATGTAAATTGAAGTGTTTAAGTACTACAAATTG
1 GTGTTTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTG
10636163 TGGTGTACAA
Statistics
Matches: 254, Mismatches: 60, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
44 28 0.11
45 8 0.03
46 180 0.71
47 38 0.15
ACGTcount: A:0.33, C:0.04, G:0.23, T:0.39
Consensus pattern (46 bp):
GTGTTTAAATGTTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAA
Found at i:10636174 original size:46 final size:46
Alignment explanation
Indices: 10636068--10636176 Score: 121
Period size: 46 Copynumber: 2.4 Consensus size: 46
10636058 GTGTTGTAAG
* * * * * *
10636068 TTGAGGTGTTTAAATGCTGTAAACTGAAATGTTTAATTGCTATAAA
1 TTGAGGTGCTCAAATGATGTAAACTGAAATGTTTAAGTACTACAAA
* *
10636114 TTGAGGTGCTCAAATGATGTAAATTGAAGTGTTTAAGTACTACAAA
1 TTGAGGTGCTCAAATGATGTAAACTGAAATGTTTAAGTACTACAAA
*
10636160 TTGTGGTG-TACAAATGA
1 TTGAGGTGCT-CAAATGA
10636177 GTCTAAAATT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 1 0.02
46 52 0.98
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (46 bp):
TTGAGGTGCTCAAATGATGTAAACTGAAATGTTTAAGTACTACAAA
Found at i:10642096 original size:7 final size:7
Alignment explanation
Indices: 10642084--10642110 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
10642074 TCACCATATA
10642084 TCTTGAT
1 TCTTGAT
10642091 TCTTGAT
1 TCTTGAT
10642098 TCTTGAT
1 TCTTGAT
10642105 TCTTGA
1 TCTTGA
10642111 CTATTAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (7 bp):
TCTTGAT
Found at i:10643494 original size:3 final size:3
Alignment explanation
Indices: 10643486--10643528 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
10643476 AGAAGTTGAC
10643486 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10643529 CAACAACACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10665145 original size:21 final size:21
Alignment explanation
Indices: 10665109--10665169 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
10665099 TTTTTAAAAA
*
10665109 TTAAAAATCATTAAAATTA-TT
1 TTAAAAAT-ATAAAAATTATTT
*
10665130 TTAAAAAGTATAAAAAATATTT
1 TTAAAAA-TATAAAAATTATTT
* *
10665152 TTTAAAATTTAAAAATTA
1 TTAAAAATATAAAAATTA
10665170 ATTAAATGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 24 0.73
22 9 0.27
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
TTAAAAATATAAAAATTATTT
Found at i:10668350 original size:86 final size:85
Alignment explanation
Indices: 10668205--10668367 Score: 222
Period size: 86 Copynumber: 1.9 Consensus size: 85
10668195 ATTTAAATCA
* * * * *
10668205 TTTAAAAGATTATAAAGATGTAAACTATTAAAATAGTAAATTTGCATTTTAACTTTTATAAATTA
1 TTTAAAAGATTATAAAGATATAAACTATTAAAATAGTAAAATTACATTTTAACTCTTATAAA-AA
10668270 TATACAACTTAATATCTGTGT
65 TATACAACTTAATATCTGTGT
* *
10668291 TTTAAATA-ATTATAAAGATATAAGCTATTAAAAT-GATAAAATTACATTTTAGCTCTTATAAAA
1 TTTAAA-AGATTATAAAGATATAAACTATTAAAATAG-TAAAATTACATTTTAACTCTTATAAAA
10668354 ATATACAACTTAAT
64 ATATACAACTTAAT
10668368 TCTACTTTGC
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
85 15 0.22
86 52 0.76
87 1 0.01
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (85 bp):
TTTAAAAGATTATAAAGATATAAACTATTAAAATAGTAAAATTACATTTTAACTCTTATAAAAAT
ATACAACTTAATATCTGTGT
Found at i:10669626 original size:31 final size:31
Alignment explanation
Indices: 10669584--10669652 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
10669574 GTAACATTTC
*
10669584 ATAGTTAGGTGACCAAAAAAGAAATTTACTA
1 ATAGTTGGGTGACCAAAAAAGAAATTTACTA
*
10669615 ATAGTTGGGTGACTAAAAAAGAAATTTACTA
1 ATAGTTGGGTGACCAAAAAAGAAATTTACTA
10669646 ATAGTTG
1 ATAGTTG
10669653 ACTGACTACT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.45, C:0.07, G:0.19, T:0.29
Consensus pattern (31 bp):
ATAGTTGGGTGACCAAAAAAGAAATTTACTA
Found at i:10669659 original size:31 final size:31
Alignment explanation
Indices: 10669593--10669660 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
10669583 CATAGTTAGG
* **
10669593 TGACCAAAAAAGAAATTTACTAATAGTTGGG
1 TGACTAAAAAAGAAATTTACTAATAGTTGAC
10669624 TGACTAAAAAAGAAATTTACTAATAGTTGAC
1 TGACTAAAAAAGAAATTTACTAATAGTTGAC
10669655 TGACTA
1 TGACTA
10669661 CTAGTATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.46, C:0.10, G:0.16, T:0.28
Consensus pattern (31 bp):
TGACTAAAAAAGAAATTTACTAATAGTTGAC
Found at i:10669927 original size:16 final size:15
Alignment explanation
Indices: 10669886--10669928 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
10669876 ATTTTATTCT
10669886 AATTATAATTATTGA
1 AATTATAATTATTGA
*
10669901 AA-TATATATTATTTA
1 AATTATA-ATTATTGA
10669916 CAATTATAATTAT
1 -AATTATAATTAT
10669929 ATTTGTGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 4 0.17
15 9 0.38
16 7 0.29
17 4 0.17
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
AATTATAATTATTGA
Found at i:10677251 original size:31 final size:32
Alignment explanation
Indices: 10677195--10677256 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 32
10677185 CGTTTGTTCA
*
10677195 GGACTAAAATTTTAAAATTCAAAAAAGTACAT
1 GGACTAAAATTTAAAAATTCAAAAAAGTACAT
10677227 GGACT-AAATTTAACAAATTC-AAAAAGTACA
1 GGACTAAAATTTAA-AAATTCAAAAAAGTACA
10677257 GATACTGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 17 0.61
32 11 0.39
ACGTcount: A:0.53, C:0.11, G:0.10, T:0.26
Consensus pattern (32 bp):
GGACTAAAATTTAAAAATTCAAAAAAGTACAT
Found at i:10677276 original size:32 final size:31
Alignment explanation
Indices: 10677209--10677281 Score: 78
Period size: 32 Copynumber: 2.3 Consensus size: 31
10677199 TAAAATTTTA
*
10677209 AAATTCAAAAAAGTACATGGACTAAATTTAAC
1 AAATTC-AAAAAGTACATGGACTAAATTGAAC
* *
10677241 AAATTCAAAAAGTACA-GATACTGAAATTGATC
1 AAATTCAAAAAGTACATG-GACT-AAATTGAAC
10677273 AAATT-AAAA
1 AAATTCAAAA
10677282 TATAGGAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 1 0.03
31 17 0.47
32 18 0.50
ACGTcount: A:0.55, C:0.11, G:0.10, T:0.25
Consensus pattern (31 bp):
AAATTCAAAAAGTACATGGACTAAATTGAAC
Found at i:10679787 original size:51 final size:51
Alignment explanation
Indices: 10679711--10679814 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
10679701 CCATGCAAAA
10679711 CCTTGGAAAATAAGTAAGTTTCTCTTCTTCTATAGACGTCATGTTACCAAT
1 CCTTGGAAAATAAGTAAGTTTCTCTTCTTCTATAGACGTCATGTTACCAAT
10679762 CCTTGGAAAATAAGTAAGTTTCTCTTCTTCTATAGACGTCATGTTACCAAT
1 CCTTGGAAAATAAGTAAGTTTCTCTTCTTCTATAGACGTCATGTTACCAAT
10679813 CC
1 CC
10679815 AAAAAGAATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (51 bp):
CCTTGGAAAATAAGTAAGTTTCTCTTCTTCTATAGACGTCATGTTACCAAT
Found at i:10680206 original size:49 final size:50
Alignment explanation
Indices: 10680137--10680238 Score: 161
Period size: 53 Copynumber: 2.0 Consensus size: 50
10680127 ACATGCCACC
*
10680137 CCCATATTCTGTATTGTAAC-ATATATATAGGATTTCAAGCAGAAAACCA
1 CCCATATTCTGTATTGTAACAATATATATAGGATTTCAAGCACAAAACCA
10680186 CCCATATTCTGTATTGTAACATATATATATATAGGATTTCAAGCACAAAACCA
1 CCCATATTCTGTATTGTAAC--A-ATATATATAGGATTTCAAGCACAAAACCA
10680239 AAAATCTATC
Statistics
Matches: 48, Mismatches: 1, Indels: 4
0.91 0.02 0.08
Matches are distributed among these distances:
49 20 0.42
53 28 0.58
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (50 bp):
CCCATATTCTGTATTGTAACAATATATATAGGATTTCAAGCACAAAACCA
Found at i:10682301 original size:8 final size:9
Alignment explanation
Indices: 10682280--10682305 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
10682270 GTGGTGGAAG
10682280 AAAAAGAAC
1 AAAAAGAAC
10682289 AAAAAGAAC
1 AAAAAGAAC
10682298 AAAAAGAA
1 AAAAAGAA
10682306 AATGAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.08, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAAGAAC
Found at i:10682319 original size:15 final size:15
Alignment explanation
Indices: 10682277--10682326 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
10682267 GTGGTGGTGG
*
10682277 AAGAAAAAGAACAAA
1 AAGAAAAAGAAGAAA
10682292 AAGAACAAA-AAGAAA
1 AAGAA-AAAGAAGAAA
* *
10682307 ATGAAAAAGAAGAAG
1 AAGAAAAAGAAGAAA
10682322 AAGAA
1 AAGAA
10682327 GCACATCCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 3 0.10
15 23 0.79
16 3 0.10
ACGTcount: A:0.76, C:0.04, G:0.18, T:0.02
Consensus pattern (15 bp):
AAGAAAAAGAAGAAA
Found at i:10682327 original size:9 final size:9
Alignment explanation
Indices: 10682276--10682327 Score: 50
Period size: 9 Copynumber: 5.4 Consensus size: 9
10682266 GGTGGTGGTG
10682276 GAAGAAAAA
1 GAAGAAAAA
*
10682285 GAACAAAAA
1 GAAGAAAAA
*
10682294 GAACAAAAA
1 GAAGAAAAA
10682303 GAAAATGAAAAA
1 G--AA-GAAAAA
*
10682315 GAAGAAGAA
1 GAAGAAAAA
10682324 GAAG
1 GAAG
10682328 CACATCCATA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 27 0.73
10 2 0.05
11 2 0.05
12 6 0.16
ACGTcount: A:0.73, C:0.04, G:0.21, T:0.02
Consensus pattern (9 bp):
GAAGAAAAA
Found at i:10686785 original size:34 final size:36
Alignment explanation
Indices: 10686746--10686820 Score: 91
Period size: 38 Copynumber: 2.1 Consensus size: 36
10686736 CAAATTAAAT
**
10686746 TTATTT-A-AATCACAAAATTAAAATAATCAAAAAG
1 TTATTTAATAATCACAAAATTAAAATAAAAAAAAAG
*
10686780 TTATTTAAGATAATCTCAAAATTAAAATAAAAAAAAAG
1 TTATTT-A-ATAATCACAAAATTAAAATAAAAAAAAAG
10686818 TTA
1 TTA
10686821 CTTTGAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
34 6 0.18
37 1 0.03
38 27 0.79
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.31
Consensus pattern (36 bp):
TTATTTAATAATCACAAAATTAAAATAAAAAAAAAG
Found at i:10689933 original size:26 final size:26
Alignment explanation
Indices: 10689900--10689952 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
10689890 AAAATTTATA
*
10689900 TATAAAA-TAAATTAATATTTTTATTT
1 TATAAAATTAAAAT-ATATTTTTATTT
10689926 TATAAAATTAAAATATATTTTTATTT
1 TATAAAATTAAAATATATTTTTATTT
10689952 T
1 T
10689953 TATTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
TATAAAATTAAAATATATTTTTATTT
Found at i:10689973 original size:5 final size:6
Alignment explanation
Indices: 10689941--10689970 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
10689931 AATTAAAATA
10689941 TATTTT TATTTT TATTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT
10689971 ATTGAAAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:10690109 original size:16 final size:17
Alignment explanation
Indices: 10690084--10690126 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
10690074 AATATATATT
10690084 TTTTTATTTTAT-CAAAG
1 TTTTT-TTTTATACAAAG
10690101 TTTTTTTTTATACAAAG
1 TTTTTTTTTATACAAAG
10690118 TTTTTTTTT
1 TTTTTTTTT
10690127 TTTAATATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (17 bp):
TTTTTTTTTATACAAAG
Found at i:10691305 original size:18 final size:18
Alignment explanation
Indices: 10691265--10691321 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
10691255 ACAAGTAATA
*
10691265 ATTTTAAAATTCAAAAAATT
1 ATTTTAAAACT-AAAAAA-T
10691285 ATTTTAAAACTAAAAAAT
1 ATTTTAAAACTAAAAAAT
** *
10691303 ATTAAAAAAGTAAAAAAT
1 ATTTTAAAACTAAAAAAT
10691321 A
1 A
10691322 ATTAATATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
18 17 0.52
19 6 0.18
20 10 0.30
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.32
Consensus pattern (18 bp):
ATTTTAAAACTAAAAAAT
Found at i:10691306 original size:21 final size:20
Alignment explanation
Indices: 10691265--10691306 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
10691255 ACAAGTAATA
* *
10691265 ATTTTAAAATTCAAAAAATT
1 ATTTTAAAACTAAAAAAATT
10691285 ATTTTAAAACTAAAAAATATT
1 ATTTTAAAACTAAAAAA-ATT
10691306 A
1 A
10691307 AAAAAGTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTTTAAAACTAAAAAAATT
Found at i:10691325 original size:19 final size:18
Alignment explanation
Indices: 10691290--10691326 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
10691280 AAATTATTTT
10691290 AAAACTAAAAAATATTAA
1 AAAACTAAAAAATATTAA
*
10691308 AAAAGTAAAAAATAATTAA
1 AAAACTAAAAAAT-ATTAA
10691327 TATTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.22
Consensus pattern (18 bp):
AAAACTAAAAAATATTAA
Found at i:10698141 original size:31 final size:31
Alignment explanation
Indices: 10698074--10698141 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
10698064 TTAATAGCTC
* * * *
10698074 AGTGACTTAAATGAAAAGTTTTAAATAGTTT
1 AGTGATTTAAATGAAAACTTTCAAATAATTT
10698105 AGTGATTTAAATGAAAACTTTCAAATAATTT
1 AGTGATTTAAATGAAAACTTTCAAATAATTT
10698136 AGTGAT
1 AGTGAT
10698142 CATTTTGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.38
Consensus pattern (31 bp):
AGTGATTTAAATGAAAACTTTCAAATAATTT
Found at i:10699957 original size:20 final size:22
Alignment explanation
Indices: 10699934--10699980 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 22
10699924 ATACTTTTTG
*
10699934 AATTTTGTAGATTTTTT-AAA-
1 AATTTTATAGATTTTTTCAAAT
*
10699954 AA-TTTATATATTTTTTCAAAT
1 AATTTTATAGATTTTTTCAAAT
10699975 AATTTT
1 AATTTT
10699981 TTTATACTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 12 0.55
20 5 0.23
21 2 0.09
22 3 0.14
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (22 bp):
AATTTTATAGATTTTTTCAAAT
Found at i:10700382 original size:16 final size:16
Alignment explanation
Indices: 10700361--10700410 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 16
10700351 ATATCTAATC
10700361 ATATAATAAATTATTA
1 ATATAATAAATTATTA
10700377 ATATAAT---TTATTA
1 ATATAATAAATTATTA
* *
10700390 TTTTAATAAATTATTTA
1 ATATAATAAATTA-TTA
10700407 ATAT
1 ATAT
10700411 TTTAATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 11 0.42
16 10 0.38
17 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:10700430 original size:14 final size:14
Alignment explanation
Indices: 10700421--10700450 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10700411 TTTAATTTTA
10700421 TTTTAATAATGTTT
1 TTTTAATAATGTTT
*
10700435 TTTTAATAATATTT
1 TTTTAATAATGTTT
10700449 TT
1 TT
10700451 CATATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (14 bp):
TTTTAATAATGTTT
Found at i:10708742 original size:28 final size:28
Alignment explanation
Indices: 10708707--10708761 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
10708697 GATACTCAAA
10708707 CTTGGCTCCCTTGAGAAATAAAGCTCAG
1 CTTGGCTCCCTTGAGAAATAAAGCTCAG
* *
10708735 CTTGGCTCCTTTGAGAAATCAAGCTCA
1 CTTGGCTCCCTTGAGAAATAAAGCTCA
10708762 ACTTAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (28 bp):
CTTGGCTCCCTTGAGAAATAAAGCTCAG
Found at i:10720663 original size:24 final size:24
Alignment explanation
Indices: 10720631--10720676 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
10720621 CTAATTAAAT
* *
10720631 TTTATAAATAATTAATATTTATTG
1 TTTAAAAATAATTAAAATTTATTG
*
10720655 TTTAAAAATATTTAAAATTTAT
1 TTTAAAAATAATTAAAATTTAT
10720677 ATTTCATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTTAAAAATAATTAAAATTTATTG
Found at i:10728749 original size:24 final size:23
Alignment explanation
Indices: 10728693--10728749 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 23
10728683 AAGAACTTCT
10728693 ATTTTATTAAAAATATAAAAATA
1 ATTTTATTAAAAATATAAAAATA
10728716 ATTTACTATT-AAAATATTAAAAATAA
1 ATTT--TATTAAAAATA-TAAAAAT-A
10728742 ATTTTATT
1 ATTTTATT
10728750 TTATTAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
23 4 0.13
24 10 0.33
25 11 0.37
26 5 0.17
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTTTATTAAAAATATAAAAATA
Found at i:10728779 original size:29 final size:30
Alignment explanation
Indices: 10728700--10728780 Score: 78
Period size: 29 Copynumber: 2.7 Consensus size: 30
10728690 TCTATTTTAT
10728700 TAAAAATATAAAAATAATTTACTATTAAAATA
1 TAAAAATATAAAAATAATTT--TATTAAAATA
* ** *
10728732 TTAAAA-ATAAATTTTATTTTATT-AAATA
1 TAAAAATATAAAAATAATTTTATTAAAATA
10728760 -AAACAATATAAAAATAATTTT
1 TAAA-AATATAAAAATAATTTT
10728781 TACAAATATA
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
27 2 0.05
28 7 0.18
29 15 0.38
31 10 0.26
32 5 0.13
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (30 bp):
TAAAAATATAAAAATAATTTTATTAAAATA
Found at i:10731032 original size:32 final size:30
Alignment explanation
Indices: 10730943--10731011 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
10730933 ATTAATTAAA
*
10730943 GAGAGCTTTGAGAAATTTAAGGAGAAATTT
1 GAGAGCTTTGAGAAATTTAGGGAGAAATTT
10730973 GAGAGCTTTGAGAAATTTAGGGAGAAATTT
1 GAGAGCTTTGAGAAATTTAGGGAGAAATTT
10731003 GAGAGCTTT
1 GAGAGCTTT
10731012 TTGCTAAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.36, C:0.04, G:0.29, T:0.30
Consensus pattern (30 bp):
GAGAGCTTTGAGAAATTTAGGGAGAAATTT
Found at i:10741879 original size:17 final size:17
Alignment explanation
Indices: 10741857--10741896 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
10741847 ATTTCATTCA
10741857 TGTTTAA-AATTTTAATG
1 TGTTTAATAA-TTTAATG
*
10741874 TGTTTAATAATTTATTG
1 TGTTTAATAATTTAATG
10741891 TGTTTA
1 TGTTTA
10741897 TGTTTAAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 19 0.90
18 2 0.10
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (17 bp):
TGTTTAATAATTTAATG
Found at i:10764894 original size:39 final size:39
Alignment explanation
Indices: 10764819--10764897 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
10764809 AAATGTGAAT
10764819 ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
1 ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
10764858 ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
1 ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
10764897 A
1 A
10764898 CCATAAAAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (39 bp):
ATCTTCAAATTTCATCATCTTATAGCTAGAAACTAGCTC
Found at i:10771960 original size:23 final size:23
Alignment explanation
Indices: 10771912--10771960 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
10771902 TAAAATATAC
* *
10771912 TAAATTAAATTTTTAATAAAAAA
1 TAAATTAAATTATAAATAAAAAA
*
10771935 TAAATTAAA-TATAAATATAAATA
1 TAAATTAAATTATAAATA-AAAAA
10771958 TAA
1 TAA
10771961 GAAAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAATTAAATTATAAATAAAAAA
Found at i:10773461 original size:31 final size:31
Alignment explanation
Indices: 10773407--10773478 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 31
10773397 ATTTATATTT
10773407 ATTATAAATTATAAATATGATTTATA-TATATAA
1 ATTA-AAATTATAAATA-GATTTATATTA-ATAA
*
10773440 ATTAAAATATATAAATA-ATTTATATTAATTA
1 ATTAAAAT-TATAAATAGATTTATATTAATAA
10773471 ATTAAAAT
1 ATTAAAAT
10773479 GCATTTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
31 18 0.50
32 6 0.17
33 12 0.33
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (31 bp):
ATTAAAATTATAAATAGATTTATATTAATAA
Found at i:10779819 original size:16 final size:16
Alignment explanation
Indices: 10779794--10779828 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10779784 TTGTGTTTTG
*
10779794 TTTTGGCTGCATGACA
1 TTTTGACTGCATGACA
*
10779810 TTTTGACTGCATGGCA
1 TTTTGACTGCATGACA
10779826 TTT
1 TTT
10779829 CATCATAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (16 bp):
TTTTGACTGCATGACA
Found at i:10780287 original size:19 final size:19
Alignment explanation
Indices: 10780263--10780309 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
10780253 AACGTCTCTT
*
10780263 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
10780282 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
10780301 TATGCATTA
1 TTTGCATTA
10780310 AATACCGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:10783014 original size:19 final size:19
Alignment explanation
Indices: 10782990--10783028 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
10782980 TGAGTGAGAT
10782990 AGATGGTAAAGATTTGCCA
1 AGATGGTAAAGATTTGCCA
10783009 AGATGGTAAAGATTTGCCA
1 AGATGGTAAAGATTTGCCA
10783028 A
1 A
10783029 ACCCTGTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.26
Consensus pattern (19 bp):
AGATGGTAAAGATTTGCCA
Found at i:10784107 original size:45 final size:45
Alignment explanation
Indices: 10784057--10784540 Score: 635
Period size: 45 Copynumber: 10.8 Consensus size: 45
10784047 TTGAAAATAA
*
10784057 CAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
* * * * * *
10784102 CAGATCTTGTCTTCCTATATTAGTAGCGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
*
10784147 CAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
* * * * *
10784192 CAGATCTTGTTTTCCTGTATTGGTAGCGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
* * * * *
10784237 CAGATCTTGTCTTCCTGTATTAGCAGCGGAGTAAATCAAATATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
* * * *
10784282 CAGATTTTGTCTTCTTGTATTGGCAATGAAGTAGATCAAAGATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
* * *
10784327 CATATATTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
* * *
10784372 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAAATCAAATATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
* * * * *
10784417 CAGATTTTGTCTTCTTGTATTGGCAATGAAATAGATCAAAGATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
* * *
10784462 CATATATTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
*
10784507 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAG
1 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAG
10784541 CTTGTCTTCC
Statistics
Matches: 375, Mismatches: 64, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 375 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (45 bp):
CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCAAAGATAG
Found at i:10784207 original size:90 final size:90
Alignment explanation
Indices: 10784053--10785257 Score: 1058
Period size: 90 Copynumber: 13.6 Consensus size: 90
10784043 CAGGTTGAAA
* *
10784053 ATAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* * * *
10784118 ATATTAGTAGCGAAGTAGATCGAAG
66 GTATTGGCAGCGAAGTAGATCAAAG
* * *
10784143 ATAACAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTTTTCCT
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* *
10784208 GTATTGGTAGCGAAGTAGATCGAAG
66 GTATTGGCAGCGAAGTAGATCAAAG
* * * * * *
10784233 ATAACAGATCTTGTCTTCCTGTATTAGCAGCGGAGTAAATCAAATATAGCAGATTTTGTCTTCTT
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
**
10784298 GTATTGGCAATGAAGTAGATCAAAG
66 GTATTGGCAGCGAAGTAGATCAAAG
* *
10784323 ATAACATATATTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* *
10784388 GTATTGGCAGCGAAGTAAATCAAAT
66 GTATTGGCAGCGAAGTAGATCAAAG
* * * ** * * * *
10784413 ATAGCAGATTTTGTCTTCTTGTATTGGCAATGAAATAGATCAAAGATAACATATATTGTCTTCCT
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
10784478 GTATTGGCAGCGAAGTAGATCAAAG
66 GTATTGGCAGCGAAGTAGATCAAAG
* ** * ** * * * **
10784503 ATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAG--C-TTGTCTTCCTG-TATTG-GTAGC
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAG-ATAGCAGATCTTGTCTTCC
* * * * *
10784563 -GAAGTAG-ATC-AA--AGAT-AGCAG
65 TGTATTGGCAGCGAAGTAGATCA-AAG
* * ** * * * * *
10784584 AT--CTTG-TCTT-CCTATATTGGTAGT-GAAGTAGATCGAAGAT-----A-A-CAGATCTTGTC
1 ATAAC-AGATCTTGTCT-TCCT-GTATTGGCAG-CGA-AGTAGATCAAAGATAGCAGATCTTGTC
* *
10784637 TTCCTGAATTGGCACCGAAGTAGATCAAAG
61 TTCCTGTATTGGCAGCGAAGTAGATCAAAG
* * * ** * * * *
10784667 ATAGCAGATCTTATCTTCCTATATTGATAGTGAAATAGATCGAAGATAACAGATCTTGTCTTCCT
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
*
10784732 GTATTGACAGCGAAGTAGATCAAAG
66 GTATTGGCAGCGAAGTAGATCAAAG
* * * * * * * * *
10784757 ATATCAGATCTTATCTTCCTATATTGGTAGCAAAGTAGATCGAAGAAAACAGATCTTGTCTTCTT
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* * *
10784822 ATATTAGTAGCGAAGTAGATCAAAG
66 GTATTGGCAGCGAAGTAGATCAAAG
** * * * * * *
10784847 ATAGTAAATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCT
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* *
10784912 GTATTAGCAGTGAAGTAGATCAAAG
66 GTATTGGCAGCGAAGTAGATCAAAG
* * *
10784937 ATAACAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* * * *
10785002 ATATTGGTAGTGAAGTAGATCGAAG
66 GTATTGGCAGCGAAGTAGATCAAAG
* * * * ** * *
10785027 ATACCGGATCTTGTCTTCCTATATTGGTAGTAAAGTAAATCGAAA-ATAACAGATCTTGTCTTCC
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-AAAGATAGCAGATCTTGTCTTCC
* *
10785091 TATATTGGCA-TGAAGTAGATCAAAG
65 TGTATTGGCAGCGAAGTAGATCAAAG
** * * * * *
10785116 ATAGTAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAAC-GAATCTTGTCTTTC
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAG-ATCTTGTCTTCC
*
10785180 TATATTGGCAGCGAAGTAGATCAAAG
65 TGTATTGGCAGCGAAGTAGATCAAAG
* * * * *
10785206 ATAGCAGATCTTATTTTTCTGTATTGGCAGTGAAGTAGATCAAAGATAGCAG
1 ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAG
10785258 CCTTATCTCC
Statistics
Matches: 932, Mismatches: 149, Indels: 67
0.81 0.13 0.06
Matches are distributed among these distances:
76 2 0.00
77 4 0.00
78 4 0.00
79 15 0.02
80 10 0.01
81 13 0.01
83 14 0.02
84 9 0.01
85 13 0.01
86 4 0.00
87 6 0.01
88 8 0.01
89 77 0.08
90 749 0.80
91 4 0.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (90 bp):
ATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
GTATTGGCAGCGAAGTAGATCAAAG
Found at i:10784286 original size:135 final size:135
Alignment explanation
Indices: 10784057--10785331 Score: 1399
Period size: 135 Copynumber: 9.6 Consensus size: 135
10784047 TTGAAAATAA
* * * * *
10784057 CAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTAT
* * * *
10784122 TAGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAA
66 TGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAA
10784187 GATAG
131 GATAG
* *
10784192 CAGATCTTGTTTTCCTGTATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTAT
* * * * * *
10784257 TAGCAGCGGAGTAAATCAAATATAGCAGATTTTGTCTTCTTGTATTGGCAATGAAGTAGATCAAA
66 TGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAA
*
10784322 GATAA
131 GATAG
* * * *
10784327 CATATATTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTAT
* * * * *
10784392 TGGCAGCGAAGTAAATCAAATATAGCAGATTTTGTCTTCTTGTATTGGCAATGAAATAGATCAAA
66 TGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAA
*
10784457 GATAA
131 GATAG
* * * *
10784462 CATATATTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTAT
* * *
10784527 TGGCAGC------G----AAG-T---AG--CTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAA
66 TGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAA
10784576 GATAG
131 GATAG
* * * *
10784581 CAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGAAT
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTAT
* * * * ** * *
10784646 TGGCACCGAAGTAGATCAAAGATAGCAGATCTTATCTTCCTATATTGATAGTGAAATAGATCGAA
66 TGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAA
*
10784711 GATAA
131 GATAG
** * * *
10784716 CAGATCTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAGATATCAGATCTTATCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTAT
* * * * * * * * *
10784781 TGGTAGCAAAGTAGATCGAAGAAAACAGATCTTGTCTTCTTATATTAGTAGCGAAGTAGATCAAA
66 TGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAA
10784846 GATAG
131 GATAG
* * * * *
10784851 TAAATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTAT
* * * * * *
10784916 TAGCAGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAA
66 TGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAA
10784981 GATAG
131 GATAG
* * * * * *
10784986 CAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATACCGGATCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTAT
* ** * * * *
10785051 TGGTAGTAAAGTAAATCGAAA-ATAACAGATCTTGTCTTCCTATATTGGCA-TGAAGTAGATCAA
66 TGGCAGCGAAGTAGATC-AAAGATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAA
10785114 AGATAG
130 AGATAG
* * * * *
10785120 TAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAAC-GAATCTTGTCTTTCTATA
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAG-ATCTTGTCTTCCTGTA
* *
10785184 TTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTAT-TTTTCTGTATTGGCAGTGAAGTAGATCA
65 TTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCT-TGTATTGGCAGTGAAGTAGATCA
10785248 AAGATAG
129 AAGATAG
* * * *** * * * * *
10785255 CAG-CCTTATCTCCCTGT-GCAGTAGTGAAGTAGGTTGAAA-ATAGCAGGTCTTGTCTTCCTGTA
1 CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTA-GATCAAAGATAACAGATCTTGTCTTCCTGTA
**
10785317 ACGGCAGCGAAGTAG
65 TTGGCAGCGAAGTAG
10785332 GTTGAAGATA
Statistics
Matches: 984, Mismatches: 133, Indels: 48
0.84 0.11 0.04
Matches are distributed among these distances:
119 96 0.10
121 2 0.00
124 1 0.00
125 3 0.00
129 3 0.00
130 1 0.00
133 49 0.05
134 128 0.13
135 698 0.71
136 3 0.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.32
Consensus pattern (135 bp):
CAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGTAT
TGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTGGCAGTGAAGTAGATCAAA
GATAG
Found at i:10784554 original size:29 final size:29
Alignment explanation
Indices: 10784512--10784569 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
10784502 GATAGCAGAT
10784512 CTTGTCTTCCTGTATTGGCAGCGAAGTAG
1 CTTGTCTTCCTGTATTGGCAGCGAAGTAG
*
10784541 CTTGTCTTCCTGTATTGGTAGCGAAGTAG
1 CTTGTCTTCCTGTATTGGCAGCGAAGTAG
10784570 ATCAAAGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.19, G:0.28, T:0.36
Consensus pattern (29 bp):
CTTGTCTTCCTGTATTGGCAGCGAAGTAG
Found at i:10784589 original size:74 final size:74
Alignment explanation
Indices: 10784468--10784614 Score: 258
Period size: 74 Copynumber: 2.0 Consensus size: 74
10784458 ATAACATATA
*
10784468 TTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTATTGGCAG
1 TTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATATTGGCAG
10784533 CGAAGTAGC
66 CGAAGTAGC
* *
10784542 TTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
1 TTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATATTGGCAG
*
10784607 TGAAGTAG
66 CGAAGTAG
10784615 ATCGAAGATA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (74 bp):
TTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATATTGGCAG
CGAAGTAGC
Found at i:10784634 original size:119 final size:119
Alignment explanation
Indices: 10784423--10784659 Score: 339
Period size: 119 Copynumber: 2.0 Consensus size: 119
10784413 ATAGCAGATT
* * * *
10784423 TTGTCTTCTTGTATTGGCAATGAAATAGATCAAAGATAACATATATTGTCTTCCTGTATTGGCAG
1 TTGTCTTCCTGTATTGGCAACGAAATAGATCAAAGATAACAGATATTGTCTTCCTATATTGGCAG
* * *
10784488 CGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGC
66 CGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGAATTGGCACCGAAGTAGC
* * * * * *
10784542 TTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATATTGGTAG
1 TTGTCTTCCTGTATTGGCAACGAAATAGATCAAAGATAACAGATATTGTCTTCCTATATTGGCAG
* *
10784607 TGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGAATTGGCACCGAAGTAG
66 CGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGAATTGGCACCGAAGTAG
10784660 ATCAAAGATA
Statistics
Matches: 103, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
119 103 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (119 bp):
TTGTCTTCCTGTATTGGCAACGAAATAGATCAAAGATAACAGATATTGTCTTCCTATATTGGCAG
CGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTGAATTGGCACCGAAGTAGC
Found at i:10785257 original size:45 final size:45
Alignment explanation
Indices: 10784541--10785253 Score: 903
Period size: 45 Copynumber: 15.9 Consensus size: 45
10784531 AGCGAAGTAG
* * *
10784541 CTTGTCTTCCTGTATTGGTAGCGAAGTAGATCAAAGATAGCAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
*
10784586 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATAACAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* ** *
10784631 CTTGTCTTCCTGA-ATTGGCACCGAAGTAGATCAAAGATAGCAGAT
1 CTTGTCTTCCT-ATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* * * *
10784676 CTTATCTTCCTATATTGATAGTGAAATAGATCGAAGATAACAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* ** * *
10784721 CTTGTCTTCCTGTATTGACAGCGAAGTAGATCAAAGATATCAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* ** * *
10784766 CTTATCTTCCTATATTGGTAGCAAAGTAGATCGAAGAAAACAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* * * ** *
10784811 CTTGTCTTCTTATATTAGTAGCGAAGTAGATCAAAGATAGTAAAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* * *
10784856 CTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAAAACAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* * *
10784901 CTTGTCTTCCTGTATTAGCAGTGAAGTAGATCAAAGATAACAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
*
10784946 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAGCAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* * *
10784991 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCGAAGATACCGGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* *
10785036 CTTGTCTTCCTATATTGGTAGTAAAGTAAATCGAAA-ATAACAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATC-AAAGATAACAGAT
* **
10785081 CTTGTCTTCCTATATTGGCA-TGAAGTAGATCAAAGATAGTAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
10785125 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAAC-GAAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAG-AT
* * * *
10785170 CTTGTCTTTCTATATTGGCAGCGAAGTAGATCAAAGATAGCAGAT
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
* * * * *
10785215 CTTATTTTTCTGTATTGGCAGTGAAGTAGATCAAAGATA
1 CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATA
10785254 GCAGCCTTAT
Statistics
Matches: 579, Mismatches: 82, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
43 3 0.01
44 37 0.06
45 535 0.92
46 4 0.01
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (45 bp):
CTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAACAGAT
Found at i:10787092 original size:2 final size:2
Alignment explanation
Indices: 10787085--10787113 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
10787075 ATTGCAAACT
10787085 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10787114 CTTTCAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10788065 original size:31 final size:31
Alignment explanation
Indices: 10788030--10788088 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
10788020 AATAGCCTAG
*
10788030 TAACTTAAATAAAAACTTTCGAATAATTTAA
1 TAACTTAAATAAAAACTTTCAAATAATTTAA
* * *
10788061 TAACTTAAATGAAATCTTTTAAATAATT
1 TAACTTAAATAAAAACTTTCAAATAATT
10788089 CAATGACTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.39
Consensus pattern (31 bp):
TAACTTAAATAAAAACTTTCAAATAATTTAA
Found at i:10788479 original size:78 final size:76
Alignment explanation
Indices: 10788383--10788570 Score: 313
Period size: 78 Copynumber: 2.4 Consensus size: 76
10788373 TTGATTGATG
* * *
10788383 AAAAAATTAGTCTGATCCATATAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGA
1 AAAAAATTAATCCGATCCATGTAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGA
10788448 TAAAAAATATTTA
66 T-AAAAATA-TTA
10788461 AAAAAATTAATCCGATCCATGTAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGA
1 AAAAAATTAATCCGATCCATGTAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGA
10788526 TAAAAATATTA
66 TAAAAATATTA
* *
10788537 AAAAATTTAATCCGATCCATGTTGGTTATGTTTA
1 AAAAAATTAATCCGATCCATGTAGGTTATGTTTA
10788571 TATCTGACTT
Statistics
Matches: 105, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
76 35 0.33
77 7 0.07
78 63 0.60
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (76 bp):
AAAAAATTAATCCGATCCATGTAGGTTATGTTTAGATTTATTTTGATTTAATTTTCATCATGTGA
TAAAAATATTA
Found at i:10791449 original size:26 final size:26
Alignment explanation
Indices: 10791397--10791449 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
10791387 TTATATTTAA
* * *
10791397 AATTTTAAAATATTTTATGTATCATT
1 AATTTTAAAATAATTTATGAATAATT
10791423 AATTTTACAAATAATTTAT-AATAATT
1 AATTTTA-AAATAATTTATGAATAATT
10791449 A
1 A
10791450 TTTATACTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (26 bp):
AATTTTAAAATAATTTATGAATAATT
Found at i:10796307 original size:14 final size:15
Alignment explanation
Indices: 10796271--10796300 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10796261 ATTTCCGTCA
10796271 AATAT-ATAAAAATG
1 AATATAATAAAAATG
10796285 AATATAATAAAAATG
1 AATATAATAAAAATG
10796300 A
1 A
10796301 TTAAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (15 bp):
AATATAATAAAAATG
Found at i:10800852 original size:20 final size:20
Alignment explanation
Indices: 10800827--10800890 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
10800817 TATACTAAAC
10800827 AAAATAATAATAAAATAATA
1 AAAATAATAATAAAATAATA
*
10800847 AAAATAATATTTAAAAATCAAATA
1 AAAATAATA-AT-AAAAT--AATA
* *
10800871 AAAATATTAATAAACTAATA
1 AAAATAATAATAAAATAATA
10800891 TTTATTTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
20 13 0.36
21 1 0.03
22 9 0.25
23 1 0.03
24 12 0.33
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAATAATAATAAAATAATA
Found at i:10801366 original size:23 final size:23
Alignment explanation
Indices: 10801336--10801381 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
10801326 CTTTCTTATT
*
10801336 GTAGTAATTTTCGGGGTATTACA
1 GTAGTAATTTTCGGGATATTACA
10801359 GTAGTAATTTTCGGGATATTACA
1 GTAGTAATTTTCGGGATATTACA
10801382 TATATTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (23 bp):
GTAGTAATTTTCGGGATATTACA
Done.