Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 48 of 189
Found at i:13881242 original size:18 final size:19
Alignment explanation
Indices: 13881205--13881256 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
13881195 TTTTAAAAAA
*
13881205 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
13881223 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
13881241 TAAAAATTATTTTGAA
1 TATAAA-TATTTTGAA
13881257 ATTATTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:13890566 original size:31 final size:32
Alignment explanation
Indices: 13890531--13890594 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
13890521 GATTCTTTGA
* **
13890531 GGAAAAG-CTATATCATGTTATTTTCTAATTT
1 GGAAAAGACAATATCATGTTATTCCCTAATTT
13890562 GGAAAAGAACAATATCATGTTATTCCCTAATTT
1 GGAAAAG-ACAATATCATGTTATTCCCTAATTT
13890595 TTTGAGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 7 0.25
33 21 0.75
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (32 bp):
GGAAAAGACAATATCATGTTATTCCCTAATTT
Found at i:13893640 original size:22 final size:24
Alignment explanation
Indices: 13893613--13893657 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
13893603 AAGTGTTAAT
13893613 AAAATT-T-AGATATTTTTATAAA
1 AAAATTATCAGATATTTTTATAAA
13893635 AAAATTATCAGATATTTTTATAA
1 AAAATTATCAGATATTTTTATAA
13893658 TCTATTGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.29
23 1 0.05
24 14 0.67
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (24 bp):
AAAATTATCAGATATTTTTATAAA
Found at i:13895745 original size:64 final size:64
Alignment explanation
Indices: 13895644--13895771 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
13895634 TCCAATTTCA
*
13895644 ATTTGGATTGAAGTCATGGAAATACATTGGTTGAAAATTATATTAAGGAGAATTAGAATTTTAG
1 ATTTGGATTGAAGTCATGGAAATACATTGGTTGAAAATTATATTAACGAGAATTAGAATTTTAG
* **
13895708 ATTTGGATTGAAGTTATGGAAATAGGTTGGTTGAAAATTATATTAACGAGAATTAGAATTTTAG
1 ATTTGGATTGAAGTCATGGAAATACATTGGTTGAAAATTATATTAACGAGAATTAGAATTTTAG
13895772 CCACAATTGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (64 bp):
ATTTGGATTGAAGTCATGGAAATACATTGGTTGAAAATTATATTAACGAGAATTAGAATTTTAG
Found at i:13902891 original size:12 final size:12
Alignment explanation
Indices: 13902874--13902900 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
13902864 CTCTGAGGAA
13902874 TCACAGTCTCAT
1 TCACAGTCTCAT
13902886 TCACAGTCTCAT
1 TCACAGTCTCAT
13902898 TCA
1 TCA
13902901 AAGTACTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.33, G:0.07, T:0.33
Consensus pattern (12 bp):
TCACAGTCTCAT
Found at i:13903800 original size:15 final size:15
Alignment explanation
Indices: 13903780--13903810 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13903770 CAAACATCAC
13903780 TCATAGCAACTTTAT
1 TCATAGCAACTTTAT
*
13903795 TCATAGCAATTTTAT
1 TCATAGCAACTTTAT
13903810 T
1 T
13903811 GAATTTGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.45
Consensus pattern (15 bp):
TCATAGCAACTTTAT
Found at i:13904881 original size:15 final size:15
Alignment explanation
Indices: 13904861--13904889 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
13904851 ATGGAAAGCA
13904861 ATTTTGACCATAGCT
1 ATTTTGACCATAGCT
13904876 ATTTTGACCATAGC
1 ATTTTGACCATAGC
13904890 CATACTGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (15 bp):
ATTTTGACCATAGCT
Found at i:13909055 original size:25 final size:25
Alignment explanation
Indices: 13909016--13909093 Score: 79
Period size: 25 Copynumber: 3.0 Consensus size: 25
13909006 TCGAAAACTA
13909016 AAAAAGTAT-AAATTTAAAATTATAT
1 AAAAA-TATAAAATTTAAAATTATAT
*
13909041 AAGAATATAAAATTTAGAAATATATATT
1 AAAAATATAAAATTTA-AAAT-TATA-T
* *
13909069 AAAAATATAAAA-ATGAAATTATAT
1 AAAAATATAAAATTTAAAATTATAT
13909093 A
1 A
13909094 TAGTTGGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
24 5 0.11
25 15 0.33
26 8 0.18
27 5 0.11
28 12 0.27
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (25 bp):
AAAAATATAAAATTTAAAATTATAT
Found at i:13910154 original size:9 final size:9
Alignment explanation
Indices: 13910155--13910200 Score: 76
Period size: 9 Copynumber: 5.2 Consensus size: 9
13910145 TCGGGTATTT
13910155 TTCG-GTAA
1 TTCGGGTAA
*
13910163 TTCGGTTAA
1 TTCGGGTAA
13910172 TTCGGGTAA
1 TTCGGGTAA
13910181 TTCGGGTAA
1 TTCGGGTAA
13910190 TTCGGGTAA
1 TTCGGGTAA
13910199 TT
1 TT
13910201 TTTAACCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
8 4 0.11
9 31 0.89
ACGTcount: A:0.22, C:0.11, G:0.28, T:0.39
Consensus pattern (9 bp):
TTCGGGTAA
Found at i:13911151 original size:17 final size:17
Alignment explanation
Indices: 13911129--13911179 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
13911119 AGCAAATACT
13911129 TATTTTCGTAATTAATC
1 TATTTTCGTAATTAATC
*
13911146 TATTTTC--CA-TAA-C
1 TATTTTCGTAATTAATC
13911159 T-TTTTCGTAATTAAT-
1 TATTTTCGTAATTAATC
13911174 TATTTT
1 TATTTT
13911180 TAAATTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 11
0.68 0.05 0.28
Matches are distributed among these distances:
12 5 0.19
13 2 0.07
14 4 0.15
15 5 0.19
16 4 0.15
17 7 0.26
ACGTcount: A:0.27, C:0.12, G:0.04, T:0.57
Consensus pattern (17 bp):
TATTTTCGTAATTAATC
Found at i:13912426 original size:148 final size:148
Alignment explanation
Indices: 13912128--13912416 Score: 431
Period size: 148 Copynumber: 2.0 Consensus size: 148
13912118 AAGTTTTGAT
* * *
13912128 TTTTTTTTAAAAATAGAAAGTTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAAAG
1 TTTTTTTAAAAAAGAGAAAATTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAAAG
13912193 GAAAGTTTAAAATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTGAT
66 GAAAGTTTAAAATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTGAT
13912258 TTTTAAGAAAAATAACGA
131 TTTTAAGAAAAATAACGA
* * **
13912276 TTTTTTTAAAAAAGGAGAAAATTTAGATTTTTAAAATAAAAATCT-ATTTTTTAGTCATTTTTAA
1 TTTTTTTAAAAAA-GAGAAAATTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAAA
* * *
13912340 GGAAAAGTTTAAATTTTTTAAAATAAATTTTTTA-TTTTT-TAACTATTTCGAAATAAAAGCTTT
65 GG-AAAGTTTAAA-ATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTT
*
13912403 GGTTTTTAAGAAAA
128 GATTTTTAAGAAAA
13912417 GTAGTGATTT
Statistics
Matches: 127, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
148 67 0.53
149 42 0.33
150 18 0.14
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (148 bp):
TTTTTTTAAAAAAGAGAAAATTTAGATTTTAAAAATAAAAATATAATTTTTTAGTCATTTCAAAG
GAAAGTTTAAAATTTTAAAATAAAATTTTTATTTTTTGTAACTATTTCGAAATAAAAACTTTGAT
TTTTAAGAAAAATAACGA
Found at i:13912940 original size:24 final size:23
Alignment explanation
Indices: 13912913--13912967 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
13912903 CCCTTTCATT
13912913 TGTATTTATACATTATATATTTAA
1 TGTATTTATACATTATAT-TTTAA
* * *
13912937 TGTAAATTATGCATTTTATTTTAA
1 TGT-ATTTATACATTATATTTTAA
13912961 TGT-TTTA
1 TGTATTTA
13912968 CATTTATTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 3 0.12
24 11 0.42
25 12 0.46
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (23 bp):
TGTATTTATACATTATATTTTAA
Found at i:13913773 original size:4 final size:4
Alignment explanation
Indices: 13913764--13913793 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
13913754 GTTCAACATT
13913764 ATTA ATTA ATTA ATTA ATTA ATTA ATTA AT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA AT
13913794 AATAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:13919312 original size:21 final size:21
Alignment explanation
Indices: 13919281--13919329 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
13919271 CTAAGTCATA
13919281 AGGAGATTGTTAGCTTGTTAGT
1 AGGAG-TTGTTAGCTTGTTAGT
*
13919303 AGGAGTTGTTAGTTTGTTAGT
1 AGGAGTTGTTAGCTTGTTAGT
*
13919324 AAGAGT
1 AGGAGT
13919330 AGGAAGCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.24, C:0.02, G:0.33, T:0.41
Consensus pattern (21 bp):
AGGAGTTGTTAGCTTGTTAGT
Found at i:13919348 original size:35 final size:35
Alignment explanation
Indices: 13919302--13919387 Score: 131
Period size: 35 Copynumber: 2.5 Consensus size: 35
13919292 AGCTTGTTAG
* *
13919302 TAGGAGTTGTTAGTTTGTTAGTAAGAGTAGGAAGC
1 TAGGAGTTGTTAGCTTGTTAGTAAGAGTAAGAAGC
13919337 TAGGAGTTGTTAGCTTGTTAGTAAGAGTAAGAAGC
1 TAGGAGTTGTTAGCTTGTTAGTAAGAGTAAGAAGC
13919372 TA--AGTTTGTTAGCTTG
1 TAGGAG-TTGTTAGCTTG
13919388 AGTCATGTAT
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
33 2 0.04
34 11 0.23
35 35 0.73
ACGTcount: A:0.28, C:0.05, G:0.31, T:0.36
Consensus pattern (35 bp):
TAGGAGTTGTTAGCTTGTTAGTAAGAGTAAGAAGC
Found at i:13921116 original size:22 final size:22
Alignment explanation
Indices: 13921090--13921132 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
13921080 CAACAAAAAC
13921090 CAAGAATAATCAACACACTATG
1 CAAGAATAATCAACACACTATG
13921112 CAAGAATAATCAACACACTAT
1 CAAGAATAATCAACACACTAT
13921133 ACATACAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.23, G:0.07, T:0.19
Consensus pattern (22 bp):
CAAGAATAATCAACACACTATG
Found at i:13922226 original size:19 final size:21
Alignment explanation
Indices: 13922194--13922240 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
13922184 ATAATTTTAA
*
13922194 AATTTTTTATAAA-TATTTTG
1 AATTTTTGATAAATTATTTTG
13922214 AATTTTTGA-AAATTATTTTG
1 AATTTTTGATAAATTATTTTG
*
13922234 ATTTTTT
1 AATTTTT
13922241 TGTTGAAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (21 bp):
AATTTTTGATAAATTATTTTG
Found at i:13923435 original size:3 final size:3
Alignment explanation
Indices: 13923427--13923500 Score: 148
Period size: 3 Copynumber: 24.7 Consensus size: 3
13923417 GAGCCAAAGA
13923427 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
13923475 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
13923501 AGCTTGATAC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 71 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:13929015 original size:29 final size:29
Alignment explanation
Indices: 13928973--13929030 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
13928963 TTCGAGGTCC
13928973 TATGTGGTGTATTTGGTTGGATGAGCTTA
1 TATGTGGTGTATTTGGTTGGATGAGCTTA
13929002 TATGTGGTGTATTTGGTTGGATGAGCTTA
1 TATGTGGTGTATTTGGTTGGATGAGCTTA
13929031 AACAACTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.03, G:0.34, T:0.45
Consensus pattern (29 bp):
TATGTGGTGTATTTGGTTGGATGAGCTTA
Found at i:13932300 original size:17 final size:17
Alignment explanation
Indices: 13932253--13932301 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 17
13932243 ATTACCAAAA
*
13932253 AATATATTT-ATTTAAT
1 AATATATTTAATTTTAT
**
13932269 AATA-A-TTAAAATTAT
1 AATATATTTAATTTTAT
13932284 AATATATTTAATTTTAT
1 AATATATTTAATTTTAT
13932301 A
1 A
13932302 TAAATTTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 5
0.71 0.14 0.14
Matches are distributed among these distances:
14 2 0.08
15 9 0.36
16 5 0.20
17 9 0.36
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AATATATTTAATTTTAT
Found at i:13936030 original size:30 final size:28
Alignment explanation
Indices: 13935947--13936034 Score: 86
Period size: 31 Copynumber: 2.9 Consensus size: 28
13935937 GATAAATATC
*
13935947 AAAATTATACATTAAATTTGATTTAGTGT
1 AAAATTATACA-TAAATTTGATTTTGTGT
** *
13935976 GTAATTTTACGTATAAACTTTGATTTTGTGT
1 AAAATTATAC--ATAAA-TTTGATTTTGTGT
13936007 AAAATTATACATGAAATTTTGATTTTGT
1 AAAATTATACAT-AAA-TTTGATTTTGT
13936035 TTAATTCTCA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
29 9 0.19
30 18 0.38
31 20 0.43
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.48
Consensus pattern (28 bp):
AAAATTATACATAAATTTGATTTTGTGT
Found at i:13936191 original size:31 final size:29
Alignment explanation
Indices: 13936156--13936221 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 29
13936146 ATTTCTTTAA
13936156 ATGTATACAATTGAATCAAAATCAAAGTTTC
1 ATGTATACAATTGAA-CAAAATCAAAG-TTC
** * *
13936187 ATGTATGTAATTGCACCAAATCAAAGTTC
1 ATGTATACAATTGAACAAAATCAAAGTTC
13936216 ATGTAT
1 ATGTAT
13936222 CATATTGCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 9 0.29
30 10 0.32
31 12 0.39
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (29 bp):
ATGTATACAATTGAACAAAATCAAAGTTC
Found at i:13936228 original size:29 final size:30
Alignment explanation
Indices: 13936156--13936231 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 30
13936146 ATTTCTTTAA
* * *
13936156 ATGTATACAATTGAATCAAAATCAAAGTTTC
1 ATGTATATAATTGCA-CCAAATCAAAGTTTC
*
13936187 ATGTATGTAATTGCACCAAATCAAAG-TTC
1 ATGTATATAATTGCACCAAATCAAAGTTTC
13936216 ATGTATCAT-ATTGCAC
1 ATGTAT-ATAATTGCAC
13936232 ATTGAATCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 16 0.41
30 11 0.28
31 12 0.31
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (30 bp):
ATGTATATAATTGCACCAAATCAAAGTTTC
Found at i:13939312 original size:16 final size:16
Alignment explanation
Indices: 13939293--13939323 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
13939283 ATAAAATAAT
13939293 AATAAAATATTTTTTG
1 AATAAAATATTTTTTG
13939309 AATAAAATATTTTTT
1 AATAAAATATTTTTT
13939324 TATATTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
AATAAAATATTTTTTG
Found at i:13939443 original size:27 final size:27
Alignment explanation
Indices: 13939413--13939479 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
13939403 CCTATCAGGT
13939413 AGGCGCCAATGAAGGTGCCTCATAGAG
1 AGGCGCCAATGAAGGTGCCTCATAGAG
*
13939440 AGGCGCCAATGAAGGTGCCTTATAGAG
1 AGGCGCCAATGAAGGTGCCTCATAGAG
*
13939467 AGGCGCTAATGAA
1 AGGCGCCAATGAA
13939480 ATTTATGTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.31, C:0.19, G:0.33, T:0.16
Consensus pattern (27 bp):
AGGCGCCAATGAAGGTGCCTCATAGAG
Found at i:13939541 original size:11 final size:11
Alignment explanation
Indices: 13939527--13939570 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
13939517 CATTTAATTT
*
13939527 ATTAGTAATAA
1 ATTACTAATAA
13939538 ATTAC--A-AA
1 ATTACTAATAA
13939546 ATTACTAATAA
1 ATTACTAATAA
13939557 ATTACTAATAA
1 ATTACTAATAA
13939568 ATT
1 ATT
13939571 TATAACATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
8 7 0.24
9 1 0.03
10 1 0.03
11 20 0.69
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (11 bp):
ATTACTAATAA
Found at i:13939715 original size:22 final size:26
Alignment explanation
Indices: 13939660--13939732 Score: 100
Period size: 22 Copynumber: 2.9 Consensus size: 26
13939650 ATATCCCGAC
13939660 ATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAA-TATAAT
13939687 ATTACAATATTCATAC-AAA-A-AA-
1 ATTACAATATTCATACAAAATATAAT
*
13939709 ATTACAATATTCATACTAAATATA
1 ATTACAATATTCATACAAAATATA
13939733 GATAATCTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
22 16 0.37
23 5 0.12
24 2 0.05
25 1 0.02
26 3 0.07
27 16 0.37
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (26 bp):
ATTACAATATTCATACAAAATATAAT
Found at i:13939803 original size:27 final size:27
Alignment explanation
Indices: 13939765--13939821 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
13939755 ATAACAAAAA
13939765 AATATTGCAATTTTATATGAATATTGT
1 AATATTGCAATTTTATATGAATATTGT
* * *
13939792 AATATTGTAATTTTGTGTGAATATTGT
1 AATATTGCAATTTTATATGAATATTGT
13939819 AAT
1 AAT
13939822 GTCGGGATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (27 bp):
AATATTGCAATTTTATATGAATATTGT
Found at i:13940009 original size:19 final size:19
Alignment explanation
Indices: 13939985--13940036 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
13939975 ACAAACACAA
13939985 AAATTTATAACATAATCCT
1 AAATTTATAACATAATCCT
13940004 AAATTTATAACATAATCCT
1 AAATTTATAACATAATCCT
13940023 AAATTT-TAA-ATAAT
1 AAATTTATAACATAAT
13940037 TTGTATGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.15
18 3 0.09
19 25 0.76
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTTATAACATAATCCT
Found at i:13940271 original size:19 final size:19
Alignment explanation
Indices: 13940247--13940287 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
13940237 ACAAACACAA
*
13940247 AAATTTATAACATAATCCT
1 AAATTTATAACATAACCCT
13940266 AAATTTATAACATAACCCT
1 AAATTTATAACATAACCCT
13940285 AAA
1 AAA
13940288 CTCAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATTTATAACATAACCCT
Found at i:13940342 original size:27 final size:27
Alignment explanation
Indices: 13940304--13940406 Score: 197
Period size: 27 Copynumber: 3.8 Consensus size: 27
13940294 AAAATCAGAG
13940304 CATTGGCGCCTCCCAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
13940331 CATTGGCGCCTCCCAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
13940358 CATTGGCGCCTCCCAGATAGGCACCAC
1 CATTGGCGCCTCCCAGATAGGCACCAC
*
13940385 CATTGGCGCCTCCCAAATAGGC
1 CATTGGCGCCTCCCAGATAGGC
13940407 GCCAATACTA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.22, C:0.40, G:0.22, T:0.16
Consensus pattern (27 bp):
CATTGGCGCCTCCCAGATAGGCACCAC
Found at i:13941175 original size:394 final size:393
Alignment explanation
Indices: 13940448--13941237 Score: 1553
Period size: 394 Copynumber: 2.0 Consensus size: 393
13940438 TGACCCGGGA
13940448 AAGTATAAAATTATATTTTATTCAAAAAAATTATTATTATTTTATTCATTGGCGCCTATCTAATA
1 AAGTATAAAATTATATTTTATTCAAAAAAATTATTATTATTTTATTCATTGGCGCCTATCTAATA
13940513 GGCTCCAATGAAAAAGTAACTTATTTTGATAAATTTTTTTTTGACATCCTATTTCAGTATTTTTT
66 GGCTCCAATGAAAAAGTAACTTATTTTGATAAATTTTTTTTTGACATCCTATTTCAGTATTTTTT
13940578 TTCCTATATTATTTAGGTAAAAAACCCAATGGATGGAATAAGAAAATTATAGGCCATAGATGTTG
131 TTCCTATATTATTTAGGTAAAAAACCCAATGGATGGAATAAGAAAATTATAGGCCATAGATGTTG
13940643 GTCAAACGTAGAATGAGATAGAATACCAAACTGGCGGCGAATTCAAAAGAGGGCAGTGAGAATCA
196 GTCAAACGTAGAATGAGATAGAATACCAAACTGGCGGCGAATTCAAAAGAGGGCAGTGAGAATCA
*
13940708 ACTGACTAGAAGATCGAGATCCAGGGTGCTTAGCAAAAATTAGAGGTTATGATTGGGAAGAATTT
261 ACTGACTAGAAGATCGAGATCCAGCGTGCTTAGCAAAAATTAGAGGTTATGATTGGGAAGAATTT
13940773 AAATGGTGTAATTGAGAGAGAGGAAATTAAGGATTTTGGAGAGCGAACTAGGATAAAGAAAAATT
326 AAATGGTGTAATTGAGAGAGAGGAAATTAAGGATTTTGGAGAGCGAACTAGGATAAAGAAAAATT
13940838 GGC
391 GGC
13940841 AAGTATAAAATTATATTTTATTCAAAAAAATTATTATTATTTTATTCATTGGCGCCTATCTAATA
1 AAGTATAAAATTATATTTTATTCAAAAAAATTATTATTATTTTATTCATTGGCGCCTATCTAATA
13940906 GGCTCCAATGAAAAAGTAACTTATTTTGATAAATTTTTTTTCTGACATCCTATTTCAGTATTTTT
66 GGCTCCAATGAAAAAGTAACTTATTTTGATAAATTTTTTTT-TGACATCCTATTTCAGTATTTTT
*
13940971 TTTCCTATATTATTTAGGTAAAAAATCCAATGGATGGAATAAGAAAATTATAGGCCATAGATGTT
130 TTTCCTATATTATTTAGGTAAAAAACCCAATGGATGGAATAAGAAAATTATAGGCCATAGATGTT
13941036 GGTCAAACGTAGAATGAGATAGAATACCAAACTGGCGGCGAATTCAAAAGAGGGCAGTGAGAATC
195 GGTCAAACGTAGAATGAGATAGAATACCAAACTGGCGGCGAATTCAAAAGAGGGCAGTGAGAATC
13941101 AACTGACTAGAAGATCGAGATCCAGCGTGCTTAGCAAAAATTAGAGGTTATGATTGGGAAGAATT
260 AACTGACTAGAAGATCGAGATCCAGCGTGCTTAGCAAAAATTAGAGGTTATGATTGGGAAGAATT
13941166 TAAATGGTGTAATTGAGAGAGAGGAAATTAAGGATTTTGGAGAGCGAACTAGGATAAAGAAAAAT
325 TAAATGGTGTAATTGAGAGAGAGGAAATTAAGGATTTTGGAGAGCGAACTAGGATAAAGAAAAAT
13941231 TGGC
390 TGGC
13941235 AAG
1 AAG
13941238 GGTGGAAAAG
Statistics
Matches: 394, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
393 106 0.27
394 288 0.73
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (393 bp):
AAGTATAAAATTATATTTTATTCAAAAAAATTATTATTATTTTATTCATTGGCGCCTATCTAATA
GGCTCCAATGAAAAAGTAACTTATTTTGATAAATTTTTTTTTGACATCCTATTTCAGTATTTTTT
TTCCTATATTATTTAGGTAAAAAACCCAATGGATGGAATAAGAAAATTATAGGCCATAGATGTTG
GTCAAACGTAGAATGAGATAGAATACCAAACTGGCGGCGAATTCAAAAGAGGGCAGTGAGAATCA
ACTGACTAGAAGATCGAGATCCAGCGTGCTTAGCAAAAATTAGAGGTTATGATTGGGAAGAATTT
AAATGGTGTAATTGAGAGAGAGGAAATTAAGGATTTTGGAGAGCGAACTAGGATAAAGAAAAATT
GGC
Found at i:13947884 original size:15 final size:15
Alignment explanation
Indices: 13947864--13947902 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
13947854 TTTATACCAT
13947864 TTACCAACTGATTTG
1 TTACCAACTGATTTG
13947879 TTACCAACTGATTTG
1 TTACCAACTGATTTG
13947894 TTACCAACT
1 TTACCAACT
13947903 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.38
Consensus pattern (15 bp):
TTACCAACTGATTTG
Found at i:13948028 original size:157 final size:157
Alignment explanation
Indices: 13947742--13948037 Score: 565
Period size: 157 Copynumber: 1.9 Consensus size: 157
13947732 TCAAGCATCA
13947742 AACTTATATATATACATGAGCATATTAGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
1 AACTTATATATATACATGAGCATATTAGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
*
13947807 ACTATTTCCATGCTATATCAAAAATAATCTCACCACATTTGACCACATTTATACCATTTACCAAC
66 ACTATTTCCATGCTATATCAAAAATAATCTCACCACATTTAACCACATTTATACCATTTACCAAC
13947872 TGATTTGTTACCAACTGATTTGTTACC
131 TGATTTGTTACCAACTGATTTGTTACC
*
13947899 AACTTATATATATACATGAGCATATTTGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
1 AACTTATATATATACATGAGCATATTAGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
*
13947964 ACTATTTCCATGCTATATCAAAAATAATCTCAGCACATTTAACCACATTTATACCATTTACCAAC
66 ACTATTTCCATGCTATATCAAAAATAATCTCACCACATTTAACCACATTTATACCATTTACCAAC
13948029 TGATTTGTT
131 TGATTTGTT
13948038 TCCATACCAA
Statistics
Matches: 136, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
157 136 1.00
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.35
Consensus pattern (157 bp):
AACTTATATATATACATGAGCATATTAGTTCAAACCTTAACCATACATACCTAATTAATCTCAAT
ACTATTTCCATGCTATATCAAAAATAATCTCACCACATTTAACCACATTTATACCATTTACCAAC
TGATTTGTTACCAACTGATTTGTTACC
Found at i:13951355 original size:96 final size:96
Alignment explanation
Indices: 13951191--13951368 Score: 320
Period size: 96 Copynumber: 1.9 Consensus size: 96
13951181 TGAAAAAAAA
*
13951191 ATTCGGTAAAATCTGGTAATGCCTCATACTATATTTCAGCGACGAATACGGGTAGGCGGTATTAC
1 ATTCGGTAAAATCTGGTAACGCCTCATACTATATTTCAGCGACGAATACGGGTAGGCGGTATTAC
13951256 ATTTGTTGGTATCAGAGTTACGGTTTAGCCG
66 ATTTGTTGGTATCAGAGTTACGGTTTAGCCG
* * *
13951287 ATTCGGTAAAATTTGGTAACGCCTCATACTATATTTCGGCGACGAATACGGGTAGGGGGTATTAC
1 ATTCGGTAAAATCTGGTAACGCCTCATACTATATTTCAGCGACGAATACGGGTAGGCGGTATTAC
13951352 ATTTGTTGGTATCAGAG
66 ATTTGTTGGTATCAGAG
13951369 CTACTTCTGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 78 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (96 bp):
ATTCGGTAAAATCTGGTAACGCCTCATACTATATTTCAGCGACGAATACGGGTAGGCGGTATTAC
ATTTGTTGGTATCAGAGTTACGGTTTAGCCG
Found at i:13963240 original size:42 final size:42
Alignment explanation
Indices: 13963181--13963265 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
13963171 TTTTGAGTTC
13963181 ATCACATAAAACTTTAAGTAATAAAAAACAAGCCATCGTGTA
1 ATCACATAAAACTTTAAGTAATAAAAAACAAGCCATCGTGTA
13963223 ATCACATAAAACTTTAAGTAATAAAAAACAAGCCATCGTGTA
1 ATCACATAAAACTTTAAGTAATAAAAAACAAGCCATCGTGTA
13963265 A
1 A
13963266 GTTGGTATAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.51, C:0.16, G:0.09, T:0.24
Consensus pattern (42 bp):
ATCACATAAAACTTTAAGTAATAAAAAACAAGCCATCGTGTA
Found at i:13965130 original size:57 final size:56
Alignment explanation
Indices: 13965043--13965150 Score: 171
Period size: 57 Copynumber: 1.9 Consensus size: 56
13965033 CGGATTGCTC
*
13965043 GTCCGGGCTAAATCCATTTCCACATATTCTTTGGGAGGGCTATATCAAGATCACCT
1 GTCCGGGCTAAATCCATTTCCACATATTCTTCGGGAGGGCTATATCAAGATCACCT
* **
13965099 GTCCGGGCTAGATCTTTTTCACACATATTCTTCGGGAGGGCTATATCAAGAT
1 GTCCGGGCTAAATCCATTTC-CACATATTCTTCGGGAGGGCTATATCAAGAT
13965151 AGGATCACCC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
56 17 0.36
57 30 0.64
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (56 bp):
GTCCGGGCTAAATCCATTTCCACATATTCTTCGGGAGGGCTATATCAAGATCACCT
Found at i:13966136 original size:21 final size:19
Alignment explanation
Indices: 13966071--13966164 Score: 152
Period size: 19 Copynumber: 4.8 Consensus size: 19
13966061 AATTTTTGAG
13966071 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13966090 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
13966109 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
13966128 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
13966149 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
13966165 AGATATGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
19 51 0.73
21 19 0.27
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13966146 original size:40 final size:38
Alignment explanation
Indices: 13966071--13966171 Score: 152
Period size: 40 Copynumber: 2.7 Consensus size: 38
13966061 AATTTTTGAG
13966071 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
*
13966109 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
*
13966149 GATATGTAATCTTAGA-A-GATATG
1 GATATGCAATCTTAGATATGATATG
13966172 ATTTTGTAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
36 5 0.08
38 21 0.36
39 1 0.02
40 32 0.54
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:13966183 original size:23 final size:22
Alignment explanation
Indices: 13966103--13966188 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 22
13966093 ATGCAATCCT
*
13966103 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
13966124 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
13966143 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
13966165 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
13966188 A
1 A
13966189 ATTTAATTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
18 2 0.04
19 14 0.25
21 15 0.27
22 10 0.18
23 14 0.25
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.38
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:13966808 original size:27 final size:26
Alignment explanation
Indices: 13966778--13966828 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
13966768 TATGTACACA
13966778 TATATATATTTTAAACGAATATTTTTC
1 TATAT-TATTTTAAACGAATATTTTTC
* * *
13966805 TATATTCTTTTTAATGAATATTTT
1 TATATTATTTTAAACGAATATTTT
13966829 CATATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (26 bp):
TATATTATTTTAAACGAATATTTTTC
Found at i:13967598 original size:98 final size:98
Alignment explanation
Indices: 13967494--13967688 Score: 327
Period size: 98 Copynumber: 2.0 Consensus size: 98
13967484 TTAAAAATAA
* ** *
13967494 TAAAGGAAATATTTCGAATTTGGGATTTTAAAGGAATTTTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAATTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
*
13967559 TTAAATCTTGGATAAGTGGGTGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
13967592 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTTGGTGTGATTTA
1 TAAAGGAAATATTCCGAATTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
13967657 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
13967689 ATTTTATTGT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAATTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:13973224 original size:132 final size:132
Alignment explanation
Indices: 13972987--13973771 Score: 1347
Period size: 132 Copynumber: 5.9 Consensus size: 132
13972977 CTGCATTGAC
*
13972987 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13973052 GTTATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13973117 GT
131 GT
* *
13973119 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTATGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
13973184 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCTTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13973249 GT
131 GT
*
13973251 AGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13973316 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATGGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13973381 GT
131 GT
*
13973383 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
** * *
13973448 GTAATTCTACTTTTCTGGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
13973513 GT
131 GT
13973515 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13973580 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATTTTATCTTCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
*
13973645 AT
131 GT
* * * *
13973647 AGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGGGTACATTGAAGCTA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
13973712 GTAATTCTACTTCCCTAGGCAACAGTGGAATAGATTGAAGATTGTAAG-TCTTATCTCCCT
66 GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATT-TCAGATCTTATCTCCCT
13973772 GCAGTTGCAG
Statistics
Matches: 620, Mismatches: 32, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
132 617 1.00
133 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
GT
Found at i:13973617 original size:43 final size:43
Alignment explanation
Indices: 13973560--13973751 Score: 127
Period size: 44 Copynumber: 4.4 Consensus size: 43
13973550 CTGTGGTTAT
* * *
13973560 AGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGCTAGTAATTCTACTTCCCTAGGCAAC
* * * * * *
13973603 AGTGGAATAGATTGAAGAT-TTCAGATTTTATCTT-CCTAAGCAAT
1 AGTGGAGTAGATTGAAGCTAGT-A-ATTCTA-CTTCCCTAGGCAAC
* * * ** * * * **
13973647 AGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTAC
1 AGTGGAGTAGATTGAAGCTAG-TAATTCTACTTCCCT-AGGCAAC
* *
13973692 AGTGGGGTACATTGAAGCTAGTAATTCTACTTCCCTAGGCAAC
1 AGTGGAGTAGATTGAAGCTAGTAATTCTACTTCCCTAGGCAAC
*
13973735 AGTGGAATAGATTGAAG
1 AGTGGAGTAGATTGAAG
13973752 ATTGTAAGTC
Statistics
Matches: 107, Mismatches: 35, Indels: 14
0.69 0.22 0.09
Matches are distributed among these distances:
42 1 0.01
43 36 0.34
44 49 0.46
45 21 0.20
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (43 bp):
AGTGGAGTAGATTGAAGCTAGTAATTCTACTTCCCTAGGCAAC
Found at i:13973674 original size:44 final size:44
Alignment explanation
Indices: 13973070--13973683 Score: 204
Period size: 44 Copynumber: 14.0 Consensus size: 44
13973060 ACTTCCCTGG
* * *** *
13973070 GCAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAA
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAA
* * * * *
13973114 GCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTATG
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTA-A
** * *** * * **
13973159 GTTATAGTGGAGTACATTGAAGCCAGTA-ATTCTA-CTTCCCTGG
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATC-TCCCTAA
* * ** * *
13973202 GCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCTTAA
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAA
* * * ** * **
13973246 GCAGTAGTGGAGCAGATCGAAGATGGTGGATTTTACCTCCCTGTG
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCT-AA
** * *** * * *
13973291 GTTATAGTGGAGTACATTGAAGCCAGTA-ATTCTA-CTTCCCT-G
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATC-TCCCTAA
* * * ** *
13973333 GACAACAGTGGAATAGATGGAAGATTTCAGATCTTATCTCCCTAA
1 G-CAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAA
* * * * * **
13973378 GCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTG
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCT-AA
** * * * * * ** *
13973423 GTTATAGTGGAGTACATTGAAGCTAGTA-ATTCTA-CTTTTCT-G
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATC-TCCCTAA
* ** *
13973465 GACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAA
1 G-CAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAA
* * * * * **
13973510 GCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTG
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCT-AA
** * *** * * **
13973555 GTTATAGTGGAGTACATTGAAGCCAGTA-ATTCTA-CTTCCCTGG
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATC-TCCCTAA
* * ** *
13973598 GCAACAGTGGAATAGATTGAAGATTTCAGATTTTATCTTCCTAA
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAA
* * *
13973642 GCAATAGTGGAGTAGATCGAAGATGGCGGATTTTACCTCCCT
1 GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCT
13973684 GTGGTTACAG
Statistics
Matches: 389, Mismatches: 161, Indels: 40
0.66 0.27 0.07
Matches are distributed among these distances:
42 4 0.01
43 77 0.20
44 231 0.59
45 77 0.20
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (44 bp):
GCAATAGTGGAGTAGATTGAAGATGGCAGATTTTATCTCCCTAA
Found at i:13974024 original size:19 final size:19
Alignment explanation
Indices: 13974000--13974072 Score: 128
Period size: 19 Copynumber: 3.8 Consensus size: 19
13973990 AATTTTTGAG
13974000 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13974019 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
13974038 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
13974057 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
13974073 AGATATGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 51 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:13974098 original size:22 final size:22
Alignment explanation
Indices: 13974032--13974095 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 22
13974022 ATGCAATCCT
*
13974032 AGATATGATATGCAATCTT---
1 AGATATGATATGTAATCTTAGA
13974051 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
13974073 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
13974096 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.46
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:13974105 original size:22 final size:23
Alignment explanation
Indices: 13974061--13974105 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
13974051 AGATATGATA
*
13974061 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
13974084 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
13974106 GTAGATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:13974715 original size:27 final size:26
Alignment explanation
Indices: 13974685--13974735 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
13974675 TATGTACACA
13974685 TATATATATTTTAAACGAATATTTTTC
1 TATAT-TATTTTAAACGAATATTTTTC
* * *
13974712 TATATTCTTTTTAATGAATATTTT
1 TATATTATTTTAAACGAATATTTT
13974736 CATATTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (26 bp):
TATATTATTTTAAACGAATATTTTTC
Found at i:13975526 original size:98 final size:98
Alignment explanation
Indices: 13975399--13975593 Score: 327
Period size: 98 Copynumber: 2.0 Consensus size: 98
13975389 TTAAAAATAA
* * ** *
13975399 TAAAGGAAATATTTCGAATTTGGGATTTTAAAGGAATTTTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAATCTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
13975464 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
13975497 TAAATGAAATATTCCGAGTCTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
1 TAAAGGAAATATTCCGAATCTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
13975562 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
13975594 ATTTTATTGT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAATCTGGGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTA
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:13977455 original size:8 final size:8
Alignment explanation
Indices: 13977442--13977470 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
13977432 TATATATACT
13977442 AAATAATA
1 AAATAATA
13977450 AAATAATA
1 AAATAATA
13977458 AAATAATA
1 AAATAATA
13977466 AAATA
1 AAATA
13977471 TCATTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:13980211 original size:13 final size:13
Alignment explanation
Indices: 13980193--13980229 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
13980183 ACTAGGGATA
13980193 GTTCTGCGTACAG
1 GTTCTGCGTACAG
13980206 GTTCTGCGTACAG
1 GTTCTGCGTACAG
13980219 GTTCTGC-TACA
1 GTTCTGCGTACA
13980230 ACAATGCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.16, C:0.24, G:0.27, T:0.32
Consensus pattern (13 bp):
GTTCTGCGTACAG
Found at i:13985828 original size:52 final size:52
Alignment explanation
Indices: 13985714--13985912 Score: 230
Period size: 52 Copynumber: 3.9 Consensus size: 52
13985704 ATATCACATA
* * * *
13985714 CCGAGGCCATAGCCCAGCCATGGTCTTATA-CGGATCACATATCACA---CT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
* * * *
13985762 --GATGCCATATCCCAGATATGGTCTTATACCGTAGCACATATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
* *
13985812 CCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAGCACAAATCACATTTCT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
* * *
13985864 CCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAATCACATTTCACAT
1 CCGAAGCCATAGCCCAGCTATGGTCTTATACCG-AAGCACATATCACAT
13985913 GCTGCCATGG
Statistics
Matches: 129, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
46 24 0.19
47 14 0.11
50 2 0.02
52 77 0.60
53 12 0.09
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (52 bp):
CCGAAGCCATAGCCCAGCTATGGTCTTATACCGAAGCACATATCACATTTCT
Found at i:13987536 original size:18 final size:19
Alignment explanation
Indices: 13987497--13987540 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
13987487 GACCCTTAAA
* *
13987497 AAATAATTTTTAAATTATC
1 AAATATTTTTTAAACTATC
13987516 AAATATTTTTTAAACTA-C
1 AAATATTTTTTAAACTATC
13987534 AAA-ATTT
1 AAATATTT
13987541 ATATATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 4 0.17
19 15 0.65
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATATTTTTTAAACTATC
Found at i:13988760 original size:29 final size:29
Alignment explanation
Indices: 13988697--13988761 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
13988687 ATTTGACTTT
* *
13988697 ATTTGATTTTTTTAATAGTACAAAGATTA
1 ATTTGATTTTTTTAATAATACAAAGACTA
* * **
13988726 AATTGATTTTTTTAATAATAGATGGACTA
1 ATTTGATTTTTTTAATAATACAAAGACTA
13988755 ATTTGAT
1 ATTTGAT
13988762 CTGATCTCTA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.37, C:0.03, G:0.12, T:0.48
Consensus pattern (29 bp):
ATTTGATTTTTTTAATAATACAAAGACTA
Found at i:13989150 original size:25 final size:25
Alignment explanation
Indices: 13989103--13989150 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
13989093 TTAATTTGAA
* *
13989103 TATTTCATTTTTTTAAAAGATAATT
1 TATTTCATATTTTTAAAAAATAATT
13989128 TATTTCA-ATTTTTAATAAAATAA
1 TATTTCATATTTTTAA-AAAATAA
13989151 AATTAACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (25 bp):
TATTTCATATTTTTAAAAAATAATT
Found at i:13991961 original size:16 final size:16
Alignment explanation
Indices: 13991937--13991974 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
13991927 TTTGGTTCGC
* *
13991937 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
13991953 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
13991969 TGTAAT
1 TGTAAT
13991975 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:13992019 original size:45 final size:44
Alignment explanation
Indices: 13991953--13992047 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 44
13991943 GGATTAGAGG
*
13991953 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTATTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTATTTGGTTGAA
* *** *
13991998 TGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTATTTGGTTGAA
13992042 TGTAAT
1 TGTAAT
13992048 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 21 0.48
45 23 0.52
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTATTTGGTTGAA
Found at i:13992228 original size:18 final size:17
Alignment explanation
Indices: 13992207--13992241 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13992197 TTATTATTAA
*
13992207 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
13992225 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13992242 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13992371 original size:16 final size:16
Alignment explanation
Indices: 13992334--13992375 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
13992324 TTAATCATAT
*
13992334 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
13992350 TT-AAATATATTATAA
1 TTAAAATATATTATAA
13992365 TTAAAATATAT
1 TTAAAATATAT
13992376 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:13992382 original size:14 final size:15
Alignment explanation
Indices: 13992343--13992384 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
13992333 TTTAAACATA
*
13992343 ATTATTATTAAATAT
1 ATTATAATTAAATAT
13992358 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
13992372 A-TATAATTTAATA
1 ATTATAATTAAATA
13992385 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:13992395 original size:147 final size:147
Alignment explanation
Indices: 13992128--13992400 Score: 512
Period size: 147 Copynumber: 1.9 Consensus size: 147
13992118 ATGATTATTG
*
13992128 TTATTATTTTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTTAAC
1 TTATTATTTTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAAC
*
13992193 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
66 ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
13992258 AAATTTGTTTTGGTAAA
131 AAATTTGTTTTGGTAAA
13992275 TTATT-TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAA
1 TTATTATT-TTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAA
13992339 CATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
65 CATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
13992401 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
146 2 0.02
147 121 0.98
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTATTTTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:13992502 original size:14 final size:15
Alignment explanation
Indices: 13992453--13992504 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
13992443 GTAAAATATA
13992453 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
13992468 TATTAAATATATTAT
1 AATTAAATATATTAT
13992483 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
13992496 AATTTAATA
1 AATTAAATA
13992505 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:13992565 original size:59 final size:59
Alignment explanation
Indices: 13992382--13992567 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 59
13992372 ATATAATTTA
* *
13992382 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACCATTATATATGATACT
1 ATAAAATTCTTAAT-ATTAATA-TCTTATATGAATTTACTCAAATCATAATATATGATACT
* * * * * * * * * * *
13992443 GTAAAA-T-ATAA-ATTAACATAATTATTATTAAATATA-TTATAATTAAAATATATAAT-TT
1 ATAAAATTCTTAATATTAATAT-CTTA-TA-TGAATTTACTCA-AATCATAATATATGATACT
13992501 AATAAAATTCTTAATATTAATATCTTATATGAATTTACTCAAATCATAATATATGATACT
1 -ATAAAATTCTTAATATTAATATCTTATATGAATTTACTCAAATCATAATATATGATACT
13992561 ATAAAAT
1 ATAAAAT
13992568 AAAATTTGAA
Statistics
Matches: 91, Mismatches: 24, Indels: 22
0.66 0.18 0.16
Matches are distributed among these distances:
56 1 0.01
57 9 0.10
58 5 0.05
59 51 0.56
60 7 0.08
61 11 0.12
62 7 0.08
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.42
Consensus pattern (59 bp):
ATAAAATTCTTAATATTAATATCTTATATGAATTTACTCAAATCATAATATATGATACT
Found at i:13992582 original size:118 final size:120
Alignment explanation
Indices: 13992337--13992624 Score: 464
Period size: 118 Copynumber: 2.4 Consensus size: 120
13992327 ATCATATTTA
13992337 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
13992402 TATTCTTATATGAATTTACTCAAACCATTATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAATT
13992457 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAT-ATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
13992521 TA-TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA-TT
* *
13992575 GAA-ATAATTAATATTAAATATATT-TAATT-AAA-ATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
13992625 TAAAATAATT
Statistics
Matches: 161, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
115 17 0.11
116 3 0.02
117 8 0.05
118 65 0.40
119 9 0.06
120 59 0.37
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAATT
Found at i:13992610 original size:15 final size:15
Alignment explanation
Indices: 13992590--13992623 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
13992580 AATTAATATT
13992590 AAATAT-ATTTAATTA
1 AAATATGATTTAA-TA
13992605 AAATATGATTTAATA
1 AAATATGATTTAATA
13992620 AAAT
1 AAAT
13992624 TTAAAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
AAATATGATTTAATA
Found at i:13992750 original size:91 final size:90
Alignment explanation
Indices: 13992640--13992846 Score: 281
Period size: 91 Copynumber: 2.3 Consensus size: 90
13992630 TAATTATAAC
* * * *
13992640 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTAT-TTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
13992704 TAATATATAATTTCATAAAATTCTTGA
64 TAATATATAATTTCATAAAATTCTTAA
* *
13992731 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTAT-TTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
13992796 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
**
13992822 TAATAAAATGGTTTATATGAATTTA
1 TAAT-AAATTATTTATATGAATTTA
13992847 CTAAAATCAA
Statistics
Matches: 103, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
91 95 0.92
92 8 0.08
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.45
Consensus pattern (90 bp):
TAATAAATTATTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:13992822 original size:47 final size:46
Alignment explanation
Indices: 13992690--13992828 Score: 126
Period size: 47 Copynumber: 3.0 Consensus size: 46
13992680 TAATTATTAC
* *
13992690 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAAT-ATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
13992737 AT-T--TTCTTATATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
13992781 ATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATA-TGATATATAATTTCATAAAATTCTTAATAATAA
13992828 A
1 A
13992829 ATGGTTTATA
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 14 0.20
47 22 0.32
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (46 bp):
ATATAATTTAATATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:13994250 original size:11 final size:11
Alignment explanation
Indices: 13994236--13994262 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
13994226 AAAAATCAAT
13994236 ACAAAAGTTTC
1 ACAAAAGTTTC
13994247 ACAAAAGTTTC
1 ACAAAAGTTTC
13994258 ACAAA
1 ACAAA
13994263 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:14001606 original size:29 final size:30
Alignment explanation
Indices: 14001553--14001612 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 30
14001543 TCCGAGACTT
*
14001553 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGTAAAAATTTA
14001583 GGGGC-AAAATCGTAATT-T-TAAAAAATTTA
1 GGGGCAAAAAT-GTAATTATGT-AAAAATTTA
14001612 G
1 G
14001613 AGTCGAGGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
28 1 0.04
29 15 0.56
30 11 0.41
ACGTcount: A:0.43, C:0.05, G:0.22, T:0.30
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGTAAAAATTTA
Found at i:14007498 original size:29 final size:30
Alignment explanation
Indices: 14007439--14007496 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
14007429 TCCGAGCCTT
*
14007439 GGGGCAAAAATATAATTATGTAAAAGTTTA
1 GGGGCAAAAATATAATTATGAAAAAGTTTA
*
14007469 GGGGC-AAAATCATAATTTTGAAAAAGTT
1 GGGGCAAAAAT-ATAATTATGAAAAAGTT
14007497 AGAGTCGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAATATAATTATGAAAAAGTTTA
Found at i:14013019 original size:17 final size:17
Alignment explanation
Indices: 14012997--14013029 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14012987 AATTTAGTAT
14012997 TGTTTTAGTTAATTTTC
1 TGTTTTAGTTAATTTTC
*
14013014 TGTTTTAGTTCATTTT
1 TGTTTTAGTTAATTTT
14013030 TAGTTAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.06, G:0.12, T:0.67
Consensus pattern (17 bp):
TGTTTTAGTTAATTTTC
Found at i:14015930 original size:14 final size:14
Alignment explanation
Indices: 14015907--14015937 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14015897 TAATAATAAA
14015907 AATGGACATTTCTC
1 AATGGACATTTCTC
*
14015921 AATGGTCATTTCTC
1 AATGGACATTTCTC
14015935 AAT
1 AAT
14015938 TTGGATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (14 bp):
AATGGACATTTCTC
Found at i:14018044 original size:20 final size:20
Alignment explanation
Indices: 14018019--14018074 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
14018009 GATTAGTACC
14018019 ATTATTATTATAAAATCGAT
1 ATTATTATTATAAAATCGAT
* * *
14018039 ATTATTATGATAAAGTTGAT
1 ATTATTATTATAAAATCGAT
*
14018059 ATTATTACTATAAAAT
1 ATTATTATTATAAAAT
14018075 TGGTATTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.45
Consensus pattern (20 bp):
ATTATTATTATAAAATCGAT
Found at i:14018081 original size:20 final size:19
Alignment explanation
Indices: 14018019--14018081 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 19
14018009 GATTAGTACC
*
14018019 ATTATTATTATAAAATCGAT
1 ATTATTA-TATAAAATTGAT
*
14018039 ATTATTATGATAAAGTTGAT
1 ATTATTAT-ATAAAATTGAT
*
14018059 ATTATTACTATAAAATTGGT
1 ATTATTA-TATAAAATTGAT
14018079 ATT
1 ATT
14018082 TTCATTACTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 35 0.95
21 1 0.03
ACGTcount: A:0.41, C:0.03, G:0.10, T:0.46
Consensus pattern (19 bp):
ATTATTATATAAAATTGAT
Found at i:14021068 original size:23 final size:23
Alignment explanation
Indices: 14021016--14021066 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
14021006 TGCTTGTAAT
14021016 CGATTTGCAATTGTTTTTGCCAC
1 CGATTTGCAATTGTTTTTGCCAC
14021039 CGATTTGCAATTGTTTTTGCCAC
1 CGATTTGCAATTGTTTTTGCCAC
14021062 C-ATTT
1 CGATTT
14021067 TGTAGATTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 4 0.14
23 24 0.86
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.45
Consensus pattern (23 bp):
CGATTTGCAATTGTTTTTGCCAC
Found at i:14027767 original size:23 final size:22
Alignment explanation
Indices: 14027717--14027786 Score: 97
Period size: 23 Copynumber: 3.2 Consensus size: 22
14027707 CGGCCCATAT
* * *
14027717 TAAATATATATTT-AATATATA
1 TAAATATATATTTGATTAAAAA
14027738 TAAATATATATTTGATTAAAAA
1 TAAATATATATTTGATTAAAAA
14027760 TAATATATATATTTGATTAAAAA
1 TAA-ATATATATTTGATTAAAAA
14027783 TAAA
1 TAAA
14027787 AAAATATATT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 13 0.30
22 9 0.20
23 22 0.50
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (22 bp):
TAAATATATATTTGATTAAAAA
Found at i:14027793 original size:24 final size:23
Alignment explanation
Indices: 14027743--14027797 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 23
14027733 ATATATAAAT
* *
14027743 ATATATTTGATTAAAAATAATAT
1 ATATATTTGATTAAAAATAAAAA
14027766 ATATATTTGATTAAAAATAAAAAA
1 ATATATTTGATTAAAAAT-AAAAA
14027790 ATATATTT
1 ATATATTT
14027798 AATATATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 18 0.62
24 11 0.38
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (23 bp):
ATATATTTGATTAAAAATAAAAA
Found at i:14028226 original size:14 final size:14
Alignment explanation
Indices: 14028207--14028236 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14028197 TGATTGTTTT
*
14028207 TAATCTAAATTTAC
1 TAATCTAAATTAAC
14028221 TAATCTAAATTAAC
1 TAATCTAAATTAAC
14028235 TA
1 TA
14028237 CGAACGCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:14031141 original size:52 final size:51
Alignment explanation
Indices: 14031070--14031278 Score: 275
Period size: 52 Copynumber: 4.1 Consensus size: 51
14031060 ATCAAGTGAT
* *
14031070 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-G
* *
14031122 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * *
14031173 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
14031220 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGTG
14031272 ATAAGTG
1 A-AAGTG
14031279 GCTACACTTA
Statistics
Matches: 138, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
46 42 0.30
51 1 0.01
52 90 0.65
53 5 0.04
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:14031173 original size:7 final size:7
Alignment explanation
Indices: 14031156--14031189 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
14031146 TACACTTATC
14031156 TGATCAAG
1 TGAT-AAG
14031164 TGATAAG
1 TGATAAG
*
14031171 TGAAAAG
1 TGATAAG
14031178 TGATAAG
1 TGATAAG
14031185 TGATA
1 TGATA
14031190 GCTTCGGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.44, C:0.03, G:0.26, T:0.26
Consensus pattern (7 bp):
TGATAAG
Found at i:14031251 original size:46 final size:44
Alignment explanation
Indices: 14031174--14031389 Score: 190
Period size: 37 Copynumber: 5.3 Consensus size: 44
14031164 TGATAAGTGA
*
14031174 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTT--GCTACACTTATCTGATCAAGAGAC
*
14031220 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGC-TT-GCTACACTTATCTGATCAAGAGAC
*
14031266 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
*
14031303 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
*
14031340 AAAGTGAT-AG-G-T-G---GCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
14031376 -AAGTGATAAGTGAT
1 AAAGTGATAAGTGAT
14031390 CATACGTAAG
Statistics
Matches: 158, Mismatches: 7, Indels: 18
0.86 0.04 0.10
Matches are distributed among these distances:
35 7 0.04
36 7 0.04
37 88 0.56
38 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 50 0.32
47 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.27
Consensus pattern (44 bp):
AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
Found at i:14031286 original size:37 final size:37
Alignment explanation
Indices: 14031242--14031387 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
14031232 GATAGCTTTA
**
14031242 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
14031279 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
14031316 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
14031353 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
14031388 ATCATACGTA
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 88 0.85
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:14032493 original size:15 final size:14
Alignment explanation
Indices: 14032458--14032498 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
14032448 CTTTACTATT
14032458 TTATCAAAACATTAG
1 TTAT-AAAACATTAG
*
14032473 TTATAAAATATTAG
1 TTATAAAACATTAG
14032487 TTAATAAAACAT
1 TT-ATAAAACAT
14032499 AATGAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (14 bp):
TTATAAAACATTAG
Found at i:14035311 original size:16 final size:15
Alignment explanation
Indices: 14035288--14035321 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
14035278 TTTGATAAAC
*
14035288 TGAAAATTTAAGTAT
1 TGAAAAATTAAGTAT
14035303 TGAAAAATTAAGTAT
1 TGAAAAATTAAGTAT
14035318 TGAA
1 TGAA
14035322 TTTTTTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (15 bp):
TGAAAAATTAAGTAT
Found at i:14038230 original size:725 final size:725
Alignment explanation
Indices: 14036841--14039020 Score: 4234
Period size: 725 Copynumber: 3.0 Consensus size: 725
14036831 TATCGTAATA
14036841 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
1 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
*
14036906 TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACAGATGTATTGGTGGCCGAG
66 TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
14036971 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
131 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
14037036 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
196 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
14037101 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
261 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
* *
14037166 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAATAGAATTTTCACTTGAGAAGTTAGCAG
326 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
14037231 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
391 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
14037296 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
456 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
*
14037361 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTATAGGATATGTTGAGATGTTGTA
521 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
14037426 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTTTCATATAACAACAAT
586 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTTTCATATAACAACAAT
*
14037491 TATAAACCCAGTATAGAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
651 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
14037556 GTATTGGTCT
716 GTATTGGTCT
14037566 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
1 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
14037631 TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
66 TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
14037696 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
131 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
14037761 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
196 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
*
14037826 ATGGATTTTGTATCCGGTCTACCTGTGACTTTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
261 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
14037891 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
326 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
14037956 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
391 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
14038021 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
456 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
14038086 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
521 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
14038151 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTTTCATATAACAACAAT
586 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTTTCATATAACAACAAT
14038216 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
651 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
14038281 GTATTGGTCT
716 GTATTGGTCT
*
14038291 GAATTTGTGTTCTGAATAATTTGAATTTAAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
1 GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
*
14038356 TACTCTATTCATCTGGGTACTACAAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
66 TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
* *
14038421 TATGAAATGGGAAATTCGTGAATTCATAGCTAAATGTTTGATTTGTTAGCAAGTGAAAGTAGAAC
131 TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
14038486 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
196 ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
*
14038551 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGGTTGTTGA
261 ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
14038616 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
326 TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
14038681 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
391 AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
14038746 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
456 CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
*
14038811 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATATTGTA
521 TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
14038876 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTTTCATATAACAACAAT
586 TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTTTCATATAACAACAAT
**
14038941 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGATTCCATT
651 TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
14039006 GTATTGGTCT
716 GTATTGGTCT
14039016 GAATT
1 GAATT
14039021 GAGTGAATCC
Statistics
Matches: 1440, Mismatches: 15, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
725 1440 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (725 bp):
GAATTTGTGTTCTGAATAATTTGAATTTGAAAAATGATATTCTTTTTGAAGCTTATAGTAGTATG
TACTCTATTCATCTGGGTACTACGAAAATGTATAGTGATTTGAAACGGATGTATTGGTGGCCGAG
TATGAAATGGGAAATTTGTGAATTCATAGCTAAATGTTTGATTTGTCAGCAAGTGAAAGTAGAAC
ATCAGGTACCAATGGGTTTATTACAACCAGTCATGATTCCTGAATGGAAGTGGGAACATATCACG
ATGGATTTTGTATCCGGTCTACCTGTGACTCTGAGAAAGAAAGATTCGATCTAGGTGATTGTTGA
TAGATTGACTAAGTCGGCACATTTTGTCCCAGTCAGAACAGACTTTTCACTTGAGAAGTTAGCAG
AATTGTATATAGCAGAGATTGTGAGGTTACATGGGGTTCCAACATCTATCATTTCAGATCGAGAT
CCAAGATTTACATCGAGATTTTGGAGTAAACTACAAAAATCTTTGAGCATTAAGTTAACGTTTCA
TCCTCAAACCGATAGACAATCAGAATGAGTGATTCAGATTCTAGAGGATATGTTGAGATGTTGTA
TACTCAAATTTGAAGGTAGCTGGGAAAGATATTTACCATTGGCTGAATTTTCATATAACAACAAT
TATAAACCCAGTATAAAAACGGCACCGTTCGAAGCTCTTTATGGGTGGAAATGTAAGACGCCATT
GTATTGGTCT
Found at i:14041066 original size:42 final size:42
Alignment explanation
Indices: 14040979--14041135 Score: 163
Period size: 42 Copynumber: 3.7 Consensus size: 42
14040969 TCATGTTTAC
* * * * *
14040979 TTTCTGTTTAACTCTCACGAGCTTCTGTTTAACTCATT-CGAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAAC-CCTTACGAG
* * * *
14041021 TTTCCGTTCAGCTCTTTTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTACGAG
* * *
14041063 TTTCTGTTCAGCTCTAATGAGCTTCCGTTCAACCCTTACGAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTACGAG
* * *
14041105 TTTCTGTTTAGCACTTATGTGCTTCTGTTTA
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTTA
14041136 GCCTTCGGGC
Statistics
Matches: 92, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
41 3 0.03
42 89 0.97
ACGTcount: A:0.16, C:0.24, G:0.17, T:0.44
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTATGAGCTTCTGTTTAACCCTTACGAG
Found at i:14041069 original size:21 final size:21
Alignment explanation
Indices: 14040980--14041135 Score: 80
Period size: 21 Copynumber: 7.4 Consensus size: 21
14040970 CATGTTTACT
* * *
14040980 TTCTGTTTAACTCTCACGAGC
1 TTCTGTTTAACCCTTATGAGC
* * *
14041001 TTCTGTTTAACTCATT-CGAGT
1 TTCTGTTTAAC-CCTTATGAGC
* * * * *
14041022 TTCCGTTCAGCTCTTTTGAGC
1 TTCTGTTTAACCCTTATGAGC
* *
14041043 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTTAACCCTTATGAGC
* * * *
14041064 TTCTGTTCAGCTCTAATGAGC
1 TTCTGTTTAACCCTTATGAGC
* * * *
14041085 TTCCGTTCAACCCTTACGAGT
1 TTCTGTTTAACCCTTATGAGC
* * *
14041106 TTCTGTTTAGCACTTATGTGC
1 TTCTGTTTAACCCTTATGAGC
14041127 TTCTGTTTA
1 TTCTGTTTA
14041136 GCCTTCGGGC
Statistics
Matches: 96, Mismatches: 37, Indels: 4
0.70 0.27 0.03
Matches are distributed among these distances:
20 2 0.02
21 93 0.97
22 1 0.01
ACGTcount: A:0.16, C:0.24, G:0.17, T:0.44
Consensus pattern (21 bp):
TTCTGTTTAACCCTTATGAGC
Found at i:14041149 original size:19 final size:21
Alignment explanation
Indices: 14041097--14041150 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
14041087 CCGTTCAACC
* *
14041097 CTTACGAGTTTCTGTTTAGCA
1 CTTACGGGCTTCTGTTTAGCA
* *
14041118 CTTATGTGCTTCTGTTTAGC-
1 CTTACGGGCTTCTGTTTAGCA
14041138 CTT-CGGGCTTCTG
1 CTTACGGGCTTCTG
14041151 AAAATGATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
19 8 0.29
20 3 0.11
21 17 0.61
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (21 bp):
CTTACGGGCTTCTGTTTAGCA
Found at i:14045270 original size:21 final size:23
Alignment explanation
Indices: 14045244--14045295 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
14045234 TGTAGTTTTC
14045244 TAGGTGAAAAGA-T-GGATGTGA
1 TAGGTGAAAAGATTAGGATGTGA
*
14045265 TAGGTG-AAAGATTAGGATTTGA
1 TAGGTGAAAAGATTAGGATGTGA
14045287 TAGGTGAAA
1 TAGGTGAAA
14045296 GGCTGATGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 5 0.19
21 7 0.26
22 13 0.48
23 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.35, T:0.27
Consensus pattern (23 bp):
TAGGTGAAAAGATTAGGATGTGA
Found at i:14045553 original size:17 final size:17
Alignment explanation
Indices: 14045523--14045570 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
14045513 GTCTACCTGC
14045523 AAAATAAAAGTAAATATAT
1 AAAA-AAAA-TAAATATAT
14045542 AAAAAAAATAAATATAT
1 AAAAAAAATAAATATAT
* *
14045559 ATAAAAATTAAA
1 AAAAAAAATAAA
14045571 GTTAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 19 0.70
18 4 0.15
19 4 0.15
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (17 bp):
AAAAAAAATAAATATAT
Found at i:14059481 original size:42 final size:42
Alignment explanation
Indices: 14059392--14059505 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 42
14059382 TTTAACTCAT
* * * * * *
14059392 ATGAGTTTCCGTTCAACTCTAATGAGTTTCCGTTCAGGTTTT
1 ATGAGCTTCCGTTCAACCCTTACGGGTTTCCGTTCAGGTTTA
* ** * *
14059434 TTGAGCTTTTGTTTAACCCTTATGGGTTTCCGTTCA-GTTCTA
1 ATGAGCTTCCGTTCAACCCTTACGGGTTTCCGTTCAGGTT-TA
14059476 ATGAGCTTCCGTTCAACCCTTACGGGTTTC
1 ATGAGCTTCCGTTCAACCCTTACGGGTTTC
14059506 TATTTAGCAC
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 3 0.05
42 54 0.95
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.42
Consensus pattern (42 bp):
ATGAGCTTCCGTTCAACCCTTACGGGTTTCCGTTCAGGTTTA
Found at i:14060750 original size:20 final size:21
Alignment explanation
Indices: 14060725--14060774 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
14060715 AGTAGAAGAG
14060725 AATGAAAAATAAA-GAAAAAA
1 AATGAAAAATAAACGAAAAAA
**
14060745 AATGAAAGTTAAACGAAAAAA
1 AATGAAAAATAAACGAAAAAA
*
14060766 AAAGAAAAA
1 AATGAAAAA
14060775 ATTAAATTTC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AATGAAAAATAAACGAAAAAA
Found at i:14061038 original size:23 final size:23
Alignment explanation
Indices: 14061010--14061055 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14061000 TCCATAAAAG
14061010 AATGATTAATTTTGTCCTAACAA
1 AATGATTAATTTTGTCCTAACAA
14061033 AATGATTAATTTTGTCCTAACAA
1 AATGATTAATTTTGTCCTAACAA
14061056 TTTCTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (23 bp):
AATGATTAATTTTGTCCTAACAA
Found at i:14062295 original size:25 final size:25
Alignment explanation
Indices: 14062267--14062350 Score: 71
Period size: 25 Copynumber: 3.2 Consensus size: 25
14062257 CAATACCTAA
14062267 TAAACCTAAACTTAAAAATTGAGTT
1 TAAACCTAAACTTAAAAATTGAGTT
* ** *
14062292 TAAACAATTTAAAACTTAAAAATT-CCTAA
1 TAAAC---CT-AAACTTAAAAATTGAGT-T
*
14062321 TAAACCTAAACATAAAAATTGAGTT
1 TAAACCTAAACTTAAAAATTGAGTT
14062346 TAAAC
1 TAAAC
14062351 AATTTAAAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
25 22 0.50
26 2 0.05
28 2 0.05
29 18 0.41
ACGTcount: A:0.52, C:0.13, G:0.05, T:0.30
Consensus pattern (25 bp):
TAAACCTAAACTTAAAAATTGAGTT
Found at i:14062297 original size:54 final size:54
Alignment explanation
Indices: 14062223--14062360 Score: 231
Period size: 54 Copynumber: 2.5 Consensus size: 54
14062213 TCCTTTGCGT
* *
14062223 TTAAACAATTGAGATTAAACAATTTAAAACTTAACAATACCTAATAAACCTAAAC
1 TTAAA-AATTGAGTTTAAACAATTTAAAACTTAAAAATACCTAATAAACCTAAAC
*
14062278 TTAAAAATTGAGTTTAAACAATTTAAAACTTAAAAATTCCTAATAAACCTAAAC
1 TTAAAAATTGAGTTTAAACAATTTAAAACTTAAAAATACCTAATAAACCTAAAC
*
14062332 ATAAAAATTGAGTTTAAACAATTTAAAAC
1 TTAAAAATTGAGTTTAAACAATTTAAAAC
14062361 AATTCAGTTT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
54 74 0.94
55 5 0.06
ACGTcount: A:0.53, C:0.13, G:0.04, T:0.30
Consensus pattern (54 bp):
TTAAAAATTGAGTTTAAACAATTTAAAACTTAAAAATACCTAATAAACCTAAAC
Found at i:14062369 original size:24 final size:24
Alignment explanation
Indices: 14062337--14062384 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
14062327 TAAACATAAA
*
14062337 AATTGAGTTTAAACAATTTAAAAC
1 AATTCAGTTTAAACAATTTAAAAC
14062361 AATTCAGTTTAAACAATTTAAAAC
1 AATTCAGTTTAAACAATTTAAAAC
14062385 TTAAAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.33
Consensus pattern (24 bp):
AATTCAGTTTAAACAATTTAAAAC
Found at i:14063234 original size:4 final size:4
Alignment explanation
Indices: 14063225--14063263 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
14063215 CAGTAAAGAT
14063225 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
14063264 AGTTGCTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:14067841 original size:17 final size:18
Alignment explanation
Indices: 14067811--14067856 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
14067801 ATTTAAATTG
14067811 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
14067829 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
14067845 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
14067857 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:14069667 original size:14 final size:14
Alignment explanation
Indices: 14069629--14069671 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
14069619 TAAAATGTAC
14069629 AATATAATTAAA-T
1 AATATAATTAAATT
14069642 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
14069657 AA-ATAATTTAATT
1 AATATAATTAAATT
14069670 AA
1 AA
14069672 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:14072116 original size:3 final size:3
Alignment explanation
Indices: 14072108--14072157 Score: 64
Period size: 3 Copynumber: 16.3 Consensus size: 3
14072098 TTAAACAATT
** *
14072108 TAA TAA TAA TAA TAA TAA TAA TAA TGG TAA TAA TAAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
14072154 TAA T
1 TAA T
14072158 GATGATGATG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:14072162 original size:3 final size:3
Alignment explanation
Indices: 14072156--14072181 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14072146 AATAGTAATA
14072156 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
14072182 AATAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:14074367 original size:151 final size:153
Alignment explanation
Indices: 14073988--14074654 Score: 979
Period size: 151 Copynumber: 4.4 Consensus size: 153
14073978 AACATGTTTG
* * * * * *
14073988 TATTTCAGCCCTTTATTCATATTTTTTTCCCGAATTTTATTACTTTAAAAAAAAAATATTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAAAAAAATATACTATTTT
*
14074053 CTAATTTTATTATTTTACATTATTTTAGTAGATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
66 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
**
14074118 TTATTTAAATTTTAAAAAAAAACCCT
131 TTAAATAAA-TTT--AAAAAAACCCT
* *
14074144 TATTTCGGCCCTTTGTTCGTATTTTTTTCTCGGATTTTATTACTTT-AAAAAAATATACTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAAAAAAATATACTATTTT
* * *
14074208 CTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGAAATGTATTAATTTACTGTGTTTT
66 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
*
14074273 TTAAATAAA-TTAAAAGAACCCT
131 TTAAATAAATTTAAAAAAACCCT
* *
14074295 TATTTTGGCCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTT-AAAAAAATATACTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAAAAAAATATACTATTTT
14074359 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
66 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
* *
14074424 TTAAATAAATTTTAAAAAAATCAT
131 TTAAATAAA-TTTAAAAAAACCCT
*
14074448 TATTTCGGCCCTTTGTTCGTA--TTTTTCCC-AGATTTTATTACTTTCAATAAAAATATATTATT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGA-ATTTTATTACTTTCAA-AAAAATATACTATT
* *
14074510 TTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATCCATTTAGTGTGTG
64 TTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTT
*
14074575 TTTTAAATAAATTTTAAAAAGACCCT
129 TTTTAAATAAA-TTTAAAAAAACCCT
* * *
14074601 TATTTCAGCCCTTTGTTCGTA-TTTTTTCTCGGATTTTATTACTTTCAATAAAAA
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAA-AAAAA
14074655 ACACACTAAA
Statistics
Matches: 469, Mismatches: 35, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
150 1 0.00
151 162 0.35
152 2 0.00
153 150 0.32
154 29 0.06
155 84 0.18
156 41 0.09
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.51
Consensus pattern (153 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTCAAAAAAATATACTATTTT
CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
TTAAATAAATTTAAAAAAACCCT
Found at i:14074602 original size:306 final size:305
Alignment explanation
Indices: 14073988--14074655 Score: 1013
Period size: 306 Copynumber: 2.2 Consensus size: 305
14073978 AACATGTTTG
* * * *
14073988 TATTTCAGCCCTTTATTCATATTTTTTTCCCGAATTTTATTACTTTAAAAAAAAAATATTATTTT
1 TATTTCAGCCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAAAAATACTATTTT
*
14074053 CTAATTTTATTATTTTACATTATTTTAGTAGATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
66 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
** * * *
14074118 TTATTTAAATTTTAAAAAAAAACCCTTATTTCGGCCCTTTGTTCGTATTTTTTTCTCGGATTTTA
131 TTAAATAAATTTT-AAAAAAAACCATTATTTCGGCCCTTTGTTCGTA-TTTTTTCCCAGATTTTA
14074183 TTACTTTAAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTT
194 TTACTTTAAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTT
* *
14074248 GAAATGTATTAATTTACTGTGTTTTTTAAATAAATTAAAAGAACCCT
259 GAAATGTATCAATTTACTGTGTGTTTTAAATAAATTAAAAGAACCCT
** *
14074295 TATTTTGGCCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTT-AAAAAAATATACTATTTT
1 TATTTCAGCCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAAAAATACTATTTT
14074359 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
66 CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
*
14074424 TTAAATAAATTTT-AAAAAAATCATTATTTCGGCCCTTTGTTCGTA-TTTTTCCCAGATTTTATT
131 TTAAATAAATTTTAAAAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTCCCAGATTTTATT
* *
14074487 ACTTTCAATAAAAATATATTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTT
196 ACTTT-AA-AAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTT
* *
14074552 GAAATGTATCCATTTAGTGTGTGTTTTAAATAAATTTTAAAA-AGACCCT
259 GAAATGTATCAATTTACTGTGTGTTTTAAATAAA--TTAAAAGA-ACCCT
* * * * *
14074601 TATTTCAGCCCTTTGTTCGTA-TTTTTTCTCGGATTTTATTACTTTCAATAAAAAA
1 TATTTCAGCCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAAAAA
14074656 CACACTAAAT
Statistics
Matches: 328, Mismatches: 27, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
302 21 0.06
303 2 0.01
304 114 0.35
305 23 0.07
306 127 0.39
307 41 0.12
ACGTcount: A:0.30, C:0.11, G:0.08, T:0.51
Consensus pattern (305 bp):
TATTTCAGCCATTTGTTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAAAAATACTATTTT
CTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTGTGTTTT
TTAAATAAATTTTAAAAAAAACCATTATTTCGGCCCTTTGTTCGTATTTTTTCCCAGATTTTATT
ACTTTAAAAAAATATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGCTTGA
AATGTATCAATTTACTGTGTGTTTTAAATAAATTAAAAGAACCCT
Found at i:14074827 original size:116 final size:120
Alignment explanation
Indices: 14074681--14074907 Score: 347
Period size: 116 Copynumber: 1.9 Consensus size: 120
14074671 CATTTCAAGC
*
14074681 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATATTA-ATATTTT-AAAGTAATAAA
1 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATATTTTAAAAGTAATAAA
* *
14074744 A-TCTA-GG-AAAAAATACGAACATAGGGCCAAAATAAGGATTTTTTTTAAAATTT
66 ATTC-AGGGAAAAAAATACGAACAAAAGGCCAAAATAAGGATTTTTTTTAAAATTT
*
14074797 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAAA
1 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATATTTTAAAAGTAATAAA
* * *
14074862 ATTCAGGGAAAAAAATACGAATAAAAGGCCGAAATAAGGGTTTTTT
66 ATTCAGGGAAAAAAATACGAACAAAAGGCCAAAATAAGGATTTTTT
14074908 AATTTATTTA
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
116 44 0.44
117 6 0.06
118 13 0.13
119 4 0.04
120 32 0.32
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.31
Consensus pattern (120 bp):
ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATATTTTAAAAGTAATAAA
ATTCAGGGAAAAAAATACGAACAAAAGGCCAAAATAAGGATTTTTTTTAAAATTT
Found at i:14075130 original size:150 final size:148
Alignment explanation
Indices: 14074796--14075194 Score: 559
Period size: 150 Copynumber: 2.7 Consensus size: 148
14074786 TTTTAAAATT
14074796 TATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAA
1 TATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAA
* * ** *
14074861 AATTCAGGGAAAAAAATACGAATAAAAGGCCGAAATAAGGGTTTTTTAATTTATTTAAAAAATAC
66 AA-TC--CGAAAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTTAATTTAAATAAAAAACAC
* * *
14074926 AATAAATTAATACATTTCAAG
128 AACAAATGAATACATTTCAAA
*
14074947 CATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAA
1 TATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAA
* *
14075012 AATCCGAAAAAAATACGAACAAAAGGTCGAAATAAGGATTTTTTTAAATTTAAATAAAAAACACA
66 AATCCGAAAAAAATACGAACAAAAGGCCGAAATAAGG-GTTTTTT-AATTTAAATAAAAAACACA
* *
14075077 CCAAATGAATACCTTTCAAA
129 ACAAATGAATACATTTCAAA
* *
14075097 TATAATCTACTAAAATAATGTAAAATTAA-AAAATTAAAAAATAGTATATTTTTT-AAAGTAATA
1 TATAATGTACTAAAATAATGTAAAA-TAATAAAATTAGAAAATAGTATATTTTTTAAAAGTAATA
** * *
14075160 AAATCTAAAAAAAATACGAACAAAAGACTGAAATA
65 AAATCCGAAAAAAATACGAACAAAAGGCCGAAATA
14075195 TGAACATGTT
Statistics
Matches: 224, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
148 30 0.13
149 45 0.20
150 80 0.36
151 69 0.31
ACGTcount: A:0.55, C:0.07, G:0.09, T:0.30
Consensus pattern (148 bp):
TATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAA
AATCCGAAAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTTAATTTAAATAAAAAACACAAC
AAATGAATACATTTCAAA
Found at i:14075308 original size:29 final size:27
Alignment explanation
Indices: 14075266--14075343 Score: 83
Period size: 29 Copynumber: 2.9 Consensus size: 27
14075256 TTCAGCTGTC
*
14075266 TTTTTTT-TGTATTATTTTAGTAAATAAA
1 TTTTTTTGTATATTATTTTAGTAAAT--A
*
14075294 TTTTTTTGTATATTATTTT-GATAAATT
1 TTTTTTTGTATATTATTTTAG-TAAATA
14075321 TTTTTTTGTA-A-TATTTTAGTAAA
1 TTTTTTTGTATATTATTTTAGTAAA
14075344 AAACAGTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
25 10 0.22
26 2 0.04
27 10 0.22
28 8 0.18
29 15 0.33
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (27 bp):
TTTTTTTGTATATTATTTTAGTAAATA
Found at i:14075335 original size:25 final size:26
Alignment explanation
Indices: 14075266--14075343 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 26
14075256 TTCAGCTGTC
*
14075266 TTTTTTTTGTATTATTTTAGTAAATAA
1 TTTTTTTTGTAATATTTTAGTAAAT-A
*
14075293 ATTTTTTTGTATATTATTTT-GATAAAT-
1 TTTTTTTTGTA-A-TATTTTAG-TAAATA
14075320 TTTTTTTTGTAATATTTTAGTAAA
1 TTTTTTTTGTAATATTTTAGTAAA
14075344 AAACAGTTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
25 10 0.23
26 2 0.05
27 20 0.45
28 1 0.02
29 11 0.25
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (26 bp):
TTTTTTTTGTAATATTTTAGTAAATA
Found at i:14079559 original size:18 final size:18
Alignment explanation
Indices: 14079517--14079560 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
14079507 CCAACCACGA
14079517 TAGCTTCTAATATTCCAG
1 TAGCTTCTAATATTCCAG
* *
14079535 TATCTTCTACTATTCC-G
1 TAGCTTCTAATATTCCAG
14079552 TCAGCTTCT
1 T-AGCTTCT
14079561 TTGCCCCTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.20, C:0.27, G:0.09, T:0.43
Consensus pattern (18 bp):
TAGCTTCTAATATTCCAG
Found at i:14094584 original size:36 final size:36
Alignment explanation
Indices: 14094537--14094609 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
14094527 TGTCATATGG
14094537 TTAGCATTCCCAACAAGACAGTTGAGAACGAAAAAT
1 TTAGCATTCCCAACAAGACAGTTGAGAACGAAAAAT
14094573 TTAGCATTCCCAACAAGACAGTTGAGAACGAAAAAT
1 TTAGCATTCCCAACAAGACAGTTGAGAACGAAAAAT
14094609 T
1 T
14094610 AGCTACTGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (36 bp):
TTAGCATTCCCAACAAGACAGTTGAGAACGAAAAAT
Found at i:14097860 original size:125 final size:124
Alignment explanation
Indices: 14097500--14097998 Score: 513
Period size: 125 Copynumber: 4.0 Consensus size: 124
14097490 ATTTTTCCGA
* * * * * *
14097500 TCTTGAAAAAATTATTTCGTGTTGACATTTCTGAGCCAATTGTATAAAAAAACGCTTCAAGCAGA
1 TCTTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT--AAAAACGCTTCAAGCAGG
* **** * * *
14097565 ATGCTATT-TGAGAAGAATTTCTGAAATAGCGGTTGCATGGACACGCTTTTGCTACAGTTGG
64 ATGC-ATTATGAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGG
* * * * * * *
14097626 TCCTGGAAGAAATAATTTTGAGTTGACGTTTCTAAGCAAATAGTAT-AAATC-CTTTCTACCAGG
1 T-CTTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGC-TTCAAGCAGG
* * * *
14097689 ATGCTTTATGAGAAGAATTTGTAAAATCGCGCCCACGTGGATGCGCTTTTGCTACAGTAGG
64 ATGCATTATGAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGG
*
14097750 TCTTGAAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGA
1 TCTTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAAACGCTTCAAGCAGGA
* * * * *
14097815 TACGATT-TGAGAAGATTTTCTGAAATCGCACCCTCGTGGACGCGCTTTTGCTACAGTTGG
65 TGC-ATTATGAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGG
* * * ** *
14097875 TCCTGAAAAAAATAATTTCGAGTTGATGTTTCTGAGTAAATAGTATAAAATTGCTTCTA-CTAGG
1 TCTTG-AAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAGC-AGG
* * **
14097939 ATGCTTTATGAGAAGAATTTATGAAATCATGCCCACGTGGACGCGCTTTTGCTACAGTAG
64 ATGCATTATGAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAG
14097999 CATGTTTGGG
Statistics
Matches: 305, Mismatches: 58, Indels: 21
0.79 0.15 0.05
Matches are distributed among these distances:
123 42 0.14
124 61 0.20
125 126 0.41
126 41 0.13
127 35 0.11
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (124 bp):
TCTTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAGCAGGAT
GCATTATGAGAAGAATTTCTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGG
Found at i:14097987 original size:250 final size:250
Alignment explanation
Indices: 14097500--14097998 Score: 707
Period size: 250 Copynumber: 2.0 Consensus size: 250
14097490 ATTTTTCCGA
* * *
14097500 TCTTGAAAAAATTATTTCGTGTTGACATTTCTGAGCCAATTGTATAAAAAAACGCTTCAAGCAGA
1 TCTTGAAAAAATTATTTCGAGTTGACATTTCTGAGCAAATAGTATAAAAAAACGCTTCAAGCAGA
* * ***
14097565 ATGCTATTTGAGAAGAATTTCTGAAATAGCGGTTGCATGGACACGCTTTTGCTACAGTTGGTCCT
66 ATACGATTTGAGAAGAATTTCTGAAATAGCCCCTGCATGGACACGCTTTTGCTACAGTTGGTCCT
* * *
14097630 GGAAGAAATAATTTTGAGTTGACGTTTCTAAGCAAATAGTATAAATCCTTTCTACCAGGATGCTT
131 GAAAAAAATAATTTCGAGTTGACGTTTCTAAGCAAATAGTATAAATCCTTTCTACCAGGATGCTT
* * *
14097695 TATGAGAAGAATTTGTAAAATCGCGCCCACGTGGATGCGCTTTTGCTACAGTAGG
196 TATGAGAAGAATTTATAAAATCACGCCCACGTGGACGCGCTTTTGCTACAGTAGG
* *
14097750 TCTTGAAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAAAACGCTTCAAGCAGG
1 TCTTGAAAAAATTATTTCGAGTTGACATTTCTGAGCAAATAGTATAAAAAAACGCTTCAAGCAGA
* * * *
14097814 ATACGATTTGAGAAGATTTTCTGAAATCGCACCCT-CGTGGACGCGCTTTTGCTACAGTTGGTCC
66 ATACGATTTGAGAAGAATTTCTGAAATAGC-CCCTGCATGGACACGCTTTTGCTACAGTTGGTCC
* * * * *
14097878 TGAAAAAAATAATTTCGAGTTGATGTTTCTGAGTAAATAGTATAAAATTGC-TTCTACTAGGATG
130 TGAAAAAAATAATTTCGAGTTGACGTTTCTAAGCAAATAGTAT-AAA-TCCTTTCTACCAGGATG
* *
14097942 CTTTATGAGAAGAATTTATGAAATCATGCCCACGTGGACGCGCTTTTGCTACAGTAG
193 CTTTATGAGAAGAATTTATAAAATCACGCCCACGTGGACGCGCTTTTGCTACAGTAG
14097999 CATGTTTGGG
Statistics
Matches: 219, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
249 108 0.49
250 109 0.50
251 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (250 bp):
TCTTGAAAAAATTATTTCGAGTTGACATTTCTGAGCAAATAGTATAAAAAAACGCTTCAAGCAGA
ATACGATTTGAGAAGAATTTCTGAAATAGCCCCTGCATGGACACGCTTTTGCTACAGTTGGTCCT
GAAAAAAATAATTTCGAGTTGACGTTTCTAAGCAAATAGTATAAATCCTTTCTACCAGGATGCTT
TATGAGAAGAATTTATAAAATCACGCCCACGTGGACGCGCTTTTGCTACAGTAGG
Found at i:14101261 original size:22 final size:22
Alignment explanation
Indices: 14101197--14102262 Score: 785
Period size: 22 Copynumber: 48.5 Consensus size: 22
14101187 TTTTTAAGCC
* **
14101197 TTTAGGTTAAGGGTTTATGGAA
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101219 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101241 TTTAGGTTAAGGGTTAAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14101263 TATAGGTTTTAAGTTTAAAGTTTAGGGTT
1 TTTAGG--TTAAG-----GGTTTAGGGTT
* *
14101292 TCTAGGTTAAAGG-TTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101313 TTTAGGTTAAGGGTTTA-TGTGT
1 TTTAGGTTAAGGGTTTAGGGT-T
* * *
14101335 TTTAAGTTTAGGGTTTATGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101357 TTTAGGTTAAGGGTTTAGGGGT
1 TTTAGGTTAAGGGTTTAGGGTT
* * *
14101379 TTTAAGTTAAGAG-TTATGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14101400 TTTAGCTTAAGGGTTTATGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101422 TTTAGGTTTAGGGTTTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* * *
14101444 TTTAAGTTAAGTG-TTAGGTTT
1 TTTAGGTTAAGGGTTTAGGGTT
* **
14101465 TTTAGGTTAAGGGTTTATGGAA
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14101487 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101509 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* * ***
14101530 TTTAGGTTAAGGTTTTATGAAA
1 TTTAGGTTAAGGGTTTAGGGTT
**
14101552 TTTAATTTAAGGGTTTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101574 TCTAGGTTAAGGG-TTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14101595 TTTAGGTTAAGGATTTATGTGTT
1 TTTAGGTTAAGGGTTTA-GGGTT
* *
14101618 TTAAGCTTAA-GGTTTAGGG-T
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101638 TTTAGGTTAAGAGTTTAGGG-T
1 TTTAGGTTAAGGGTTTAGGGTT
* * *
14101659 TTTAAGTTAAGGG-TTAAGATT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101680 TTTAGCTTAAGGGTTTTTA-GGTT
1 TTTAGGTTAAGGG--TTTAGGGTT
** * * * *
14101703 TAGAGTTTATGGAATTTA-AGTT
1 TTTAGGTTAAGG-GTTTAGGGTT
** *
14101725 AAT-GGTTTAAGGTTTTTA-GGTT
1 TTTAGG-TTAAGG-GTTTAGGGTT
* **** *
14101747 AAGGGTTAGGGTTTTTAGGTTAAGGGTT
1 ----TTTA-GGTTAAGGGTTT-AGGGTT
* * ****
14101775 TATGGGTTTTAAGTTTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*****
14101797 TTTAGGTTAAGGGTTTATAAAA
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14101819 TTTAAGTTAAAGGTTTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14101841 TTTAAGTTAAGGG-TTAAGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
14101862 TTTAGGTTAAGGGTTTATGGG-T
1 TTTAGGTTAAGGGTTTA-GGGTT
* * *
14101884 TTTAAGTTTAGTGTTTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101906 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* **
14101927 TTTAGGTTAAGGGTTTATGGAA
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14101949 TTTAAGTTAAGGGTTTATGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14101971 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
14101992 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* **
14102013 TTTAGGTTAAGGGTTTATGGAA
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14102035 TTTAAGTTAAGGGTTTAGTGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* * *
14102057 TTTAAGTTTAGGGTTTAGTGTT
1 TTTAGGTTAAGGGTTTAGGGTT
14102079 TTTAGGTTTAA-GGTTTAGGG-T
1 TTTAGG-TTAAGGGTTTAGGGTT
* * **
14102100 TGTAGGTTAAGGGTTTATGGAA
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14102122 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* * *
14102144 TTTATGTTAATGG-TTAAGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
14102165 TTTAGGTTAAGGGTTTATGGG-T
1 TTTAGGTTAAGGGTTTA-GGGTT
*
14102187 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14102209 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
* *
14102231 TTTAAGTGAAGGG-TTAGGGTT
1 TTTAGGTTAAGGGTTTAGGGTT
*
14102252 TTTAAGTTAAG
1 TTTAGGTTAAG
14102263 AGTTAGGATT
Statistics
Matches: 833, Mismatches: 170, Indels: 83
0.77 0.16 0.08
Matches are distributed among these distances:
20 17 0.02
21 263 0.32
22 472 0.57
23 42 0.05
24 9 0.01
26 3 0.00
27 7 0.01
28 6 0.01
29 14 0.02
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (22 bp):
TTTAGGTTAAGGGTTTAGGGTT
Found at i:14101265 original size:51 final size:51
Alignment explanation
Indices: 14101200--14101318 Score: 154
Period size: 51 Copynumber: 2.4 Consensus size: 51
14101190 TTAAGCCTTT
* *
14101200 AGGTTAAGGGTTTAT-GGAATTTAAG-TTAAGGGTTTAGGGTTTTTAGGTTAA
1 AGGTTAAGGGTTTATAGG-ATTTAAGTTTAA-AGTTTAGGGTTTCTAGGTTAA
* *
14101251 GGGTTAAGGGTTTATAGGTTTTAAGTTTAAAGTTTAGGGTTTCTAGGTTAA
1 AGGTTAAGGGTTTATAGGATTTAAGTTTAAAGTTTAGGGTTTCTAGGTTAA
*
14101302 AGGTT-AGGGTTTTTAGG
1 AGGTTAAGGGTTTATAGG
14101319 TTAAGGGTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
50 11 0.18
51 43 0.72
52 6 0.10
ACGTcount: A:0.25, C:0.01, G:0.32, T:0.42
Consensus pattern (51 bp):
AGGTTAAGGGTTTATAGGATTTAAGTTTAAAGTTTAGGGTTTCTAGGTTAA
Found at i:14101327 original size:65 final size:64
Alignment explanation
Indices: 14101252--14102262 Score: 796
Period size: 65 Copynumber: 15.8 Consensus size: 64
14101242 TTAGGTTAAG
* * *
14101252 GGTTAAGGGTTTATAGGTTTTAAGTTTAAAGTTTAGGGTTTCTAGGTTAAAGG-TTAGGGTTTTT
1 GGTTAAGGGTTTAT-GGTTTTAAG-TTAAGGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTT
14101316 A
64 A
* * *
14101317 GGTTAAGGGTTTATGTGTTTTAAGTTTAGGGTTTATGGTTTTTAGGTTAAGGGTTTAGGGGTTTT
1 GGTTAAGGGTTTATG-GTTTTAAG-TTAAGGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTT
14101382 A
64 A
* * * * *
14101383 AGTTAAGAG-TTATGGTTTTTAGCTTAAGGGTTTATGGTTTTTAGGTTTAGGGTTTAGGGTTTTT
1 GGTTAAGGGTTTATGGTTTTAAG-TTAA-GGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTT
14101447 A
64 A
* * * * ** * *
14101448 AGTTAAGTG-TTA-GGTTTTTTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAAGGTTTT
1 GGTTAAGGGTTTATGG--TTTTAAGTTAA-GGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTT
14101511 TA
63 TA
* * * * *** ** *
14101513 AGTTAAGGG-TTAGGGTTTTTAGGTTAAGGTTTTATGAAATTTAATTTAAGGGTTTAGGGTTTCT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGG-TTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTT
14101577 A
64 A
* * * * *
14101578 GGTTAAGGG-TTAGGGTTTTTAGGTTAAGGATTTATGTGTTTTAAGCTTAA-GGTTTAGGG-TTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGG-TTTA-GGGTTTTTAGGTTAAGGGTTTAGGGTTTT
14101640 TA
63 TA
* * * * * *
14101642 GGTTAAGAGTTTAGGGTTTTAAGTTAAGGGTTAAGATTTTTAGCTT-A------AGGGTTTTTA
1 GGTTAAGGGTTTATGGTTTTAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTTA
* * * *
14101699 GGTTTAGAGTTTATGGAATTTAAGTTAATGGTTTAAGGTTTTTAGGTTAAGGG-TTAGGGTTTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAA-GGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTT
14101763 A
64 A
* *****
14101764 GGTTAAGGGTTTATGG-GTT---TTAA-GTTTAGGGTTTTTAGGTTAAGGGTTTATAAAATTTA
1 GGTTAAGGGTTTATGGTTTTAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTTA
* * * * *
14101823 AGTTAAAGGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTATGGG-TTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTTA-GGGTTTTT
14101887 A
64 A
* * * * * * **
14101888 AGTTTAGTGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTTTATGGAATTTA
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTTA
* *
14101953 AGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGG-TTAGGGTTTTTA
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTTA
* * * * *
14102017 GGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAGTGTTTTTAAGTTTAGGGTTTAGTGTTTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAA-GGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTT
14102082 A
64 A
* * * * ** * *
14102083 GGTTTAA-GGTTTAGGGTTGTAGGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAAGGTTTTT
1 GG-TTAAGGGTTTATGGTTTTAAGTTAA-GGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTT
14102147 A
64 A
* * * * *
14102148 TGTTAATGG-TTAAGGTTTTTAGGTTAAGGGTTTATGGG-TTTTAAGTTAAGGGTTTAGGGTTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAA-GGTTTA-GGGTTTTTAGGTTAAGGGTTTAGGGTTTT
14102211 TA
63 TA
* * * * *
14102213 AGTTAAGGGTTTAGGGTTTTTAAGTGAAGGGTTAGGGTTTTTAAGTTAAG
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGTTTAGGGTTTTTAGGTTAAG
14102263 AGTTAGGATT
Statistics
Matches: 799, Mismatches: 112, Indels: 70
0.81 0.11 0.07
Matches are distributed among these distances:
56 4 0.01
57 19 0.02
58 32 0.04
59 36 0.05
60 5 0.01
61 3 0.00
62 9 0.01
63 5 0.01
64 91 0.11
65 521 0.65
66 70 0.09
67 4 0.01
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (64 bp):
GGTTAAGGGTTTATGGTTTTAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTTAGGGTTTTTA
Found at i:14101348 original size:87 final size:87
Alignment explanation
Indices: 14101252--14102262 Score: 931
Period size: 87 Copynumber: 11.8 Consensus size: 87
14101242 TTAGGTTAAG
* * * *
14101252 GGTTAAGGGTTTATAGGTTTTAAGTTTAA-AGTTTAGGGTTTCTAGGTTAAAGG-TTAGGGTTTT
1 GGTTAAGGGTTTAT-GGTTTTAAG-TTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTT
*
14101315 TAGGTTAAGGGTTTA-TGTGTTTTA
64 TAGGTTAAGGGTTTAGGGT-TTTTA
* * * * * *
14101339 AGTTTAGGGTTTATGGTTTTTAGGTTAAGGGTTTAGGGGTTTTAAGTTAAGAG-TTATGGTTTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTT
* *
14101403 AGCTTAAGGGTTTATGGTTTTTA
65 AGGTTAAGGGTTTAGGGTTTTTA
* * * * * * **
14101426 GGTTTAGGGTTTAGGGTTTTTAAGTTAAGTG-TTAGGTTTTTTAGGTTAAGGGTTTATGGAATTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTT
* *
14101490 AAGTTAAGGGTTTAAGGTTTTTA
65 AGGTTAAGGGTTTAGGGTTTTTA
* * * * * *** * *
14101513 AGTTAAGGG-TTAGGGTTTTTAGGTTAAGGTTTTATGAAATTTAATTTAAGGGTTTAGGGTTTCT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTT
14101577 AGGTTAAGGG-TTAGGGTTTTTA
65 AGGTTAAGGGTTTAGGGTTTTTA
* * *
14101599 GGTTAAGGATTTATGTGTTTTAAGCTTAA-GGTTTAGGG-TTTTAGGTTAAGAGTTTAGGG-TTT
1 GGTTAAGGGTTTATG-GTTTTAAG-TTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTT
* * *
14101661 TAAGTTAAGGG-TTAAGATTTTTA
64 TAGGTTAAGGGTTTAGGGTTTTTA
* * * ** * *
14101684 GCTTAAGGGTTTTTAGG-TTT-AG---A--GTTTATGGAATTTAAGTTAATGGTTTAAGGTTTTT
1 GGTTAAGGGTTTAT-GGTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTT
14101742 AGGTTAAGGG-TTAGGGTTTTTA
65 AGGTTAAGGGTTTAGGGTTTTTA
* * *****
14101764 GGTTAAGGGTTTATGG-GTT---TTAA--GTTTAGGGTTTTTAGGTTAAGGGTTTATAAAATTTA
1 GGTTAAGGGTTTATGGTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTA
* *
14101823 AGTTAAAGGTTTAGGGTTTTTA
66 GGTTAAGGGTTTAGGGTTTTTA
* * * * *
14101845 AGTTAAGGG-TTAAGGTTTTTAGGTTAAGGGTTTATGGG-TTTTAAGTTTAGTGTTTAGGGTTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGGTTTA-GGGTTTTTAAGTTAAGGGTTTAGGGTTTT
*
14101908 TAAGTTAAGGG-TTAGGGTTTTTA
64 TAGGTTAAGGGTTTAGGGTTTTTA
* *
14101931 GGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGG-TTAGGGTTTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTT
14101995 AGGTTAAGGG-TTAGGGTTTTTA
65 AGGTTAAGGGTTTAGGGTTTTTA
* * * *
14102017 GGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAGTGTTTTTAAGTTTAGGGTTTAGTGTTTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTT
*
14102082 AGGTTTAA-GGTTTAGGG-TTGTA
65 AGG-TTAAGGGTTTAGGGTTTTTA
* * * * *
14102104 GGTTAAGGGTTTATGGAATTTAAGTTAAGGGTTTAAGGTTTTTATGTTAATGG-TTAAGGTTTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTT
14102168 AGGTTAAGGGTTTATGGG-TTTTA
65 AGGTTAAGGGTTTA-GGGTTTTTA
* * *
14102191 AGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTGAAGGG-TTAGGGTTTTT
1 GGTTAAGGGTTTATGG-TTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTT
*
14102255 AAGTTAAG
65 AGGTTAAG
14102263 AGTTAGGATT
Statistics
Matches: 766, Mismatches: 128, Indels: 60
0.80 0.13 0.06
Matches are distributed among these distances:
78 7 0.01
79 21 0.03
80 74 0.10
81 20 0.03
82 2 0.00
83 2 0.00
84 3 0.00
85 42 0.05
86 199 0.26
87 376 0.49
88 20 0.03
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (87 bp):
GGTTAAGGGTTTATGGTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTA
GGTTAAGGGTTTAGGGTTTTTA
Found at i:14101372 original size:29 final size:29
Alignment explanation
Indices: 14101228--14101376 Score: 87
Period size: 29 Copynumber: 5.1 Consensus size: 29
14101218 ATTTAAGTTA
* *
14101228 AGGGTTTAGGGTTTTTAGGTTAAGGGTTA
1 AGGGTTTATGGTTTTTAGGTTAAGGGTTT
* * *
14101257 AGGGTTTATAGGTTTTAAGTTTAA-AGTTT
1 AGGGTTTAT-GGTTTTTAGGTTAAGGGTTT
* **
14101286 AGGGTTTCTAGG-TTAAAGGTT-AGGGTTTTT
1 AGGGTTTAT-GGTTTTTAGGTTAAGGG--TTT
* * *
14101316 A-GGTTAAGGGTTTATGT-GTTTTAA--GTTT
1 AGGGTTTATGGTTT-T-TAG-GTTAAGGGTTT
14101344 AGGGTTTATGGTTTTTAGGTTAAGGGTTT
1 AGGGTTTATGGTTTTTAGGTTAAGGGTTT
14101373 AGGG
1 AGGG
14101377 GTTTTAAGTT
Statistics
Matches: 89, Mismatches: 18, Indels: 26
0.67 0.14 0.20
Matches are distributed among these distances:
27 6 0.07
28 16 0.18
29 46 0.52
30 18 0.20
31 2 0.02
32 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (29 bp):
AGGGTTTATGGTTTTTAGGTTAAGGGTTT
Found at i:14101823 original size:37 final size:37
Alignment explanation
Indices: 14101752--14101826 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
14101742 AGGTTAAGGG
****
14101752 TTAGGGTTTTTAGGTTAAGGGTTTATGGGTTTTAAGT
1 TTAGGGTTTTTAGGTTAAGGGTTTATAAAATTTAAGT
14101789 TTAGGGTTTTTAGGTTAAGGGTTTATAAAATTTAAGT
1 TTAGGGTTTTTAGGTTAAGGGTTTATAAAATTTAAGT
14101826 T
1 T
14101827 AAAGGTTTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (37 bp):
TTAGGGTTTTTAGGTTAAGGGTTTATAAAATTTAAGT
Found at i:14101834 original size:37 final size:37
Alignment explanation
Indices: 14101756--14101834 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
14101746 TAAGGGTTAG
**** * *
14101756 GGTTTTTAGGTTAAGGGTTTATGGGTTTTAAGTTTAG
1 GGTTTTTAGGTTAAGGGTTTATAAAATTTAAGTTAAA
14101793 GGTTTTTAGGTTAAGGGTTTATAAAATTTAAGTTAAA
1 GGTTTTTAGGTTAAGGGTTTATAAAATTTAAGTTAAA
14101830 GGTTT
1 GGTTT
14101835 AGGGTTTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (37 bp):
GGTTTTTAGGTTAAGGGTTTATAAAATTTAAGTTAAA
Found at i:14104656 original size:11 final size:12
Alignment explanation
Indices: 14104640--14104683 Score: 58
Period size: 11 Copynumber: 3.8 Consensus size: 12
14104630 ATTAAATATG
14104640 AATTTGAGA-GA
1 AATTTGAGAGGA
14104651 AATTTG-GAAGGA
1 AATTTGAG-AGGA
14104663 AA-TTGAGAGGA
1 AATTTGAGAGGA
14104674 AATTTGAGAG
1 AATTTGAGAG
14104684 AGGATTTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 16 0.55
12 12 0.41
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (12 bp):
AATTTGAGAGGA
Done.