Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 49 of 189
Found at i:14105629 original size:10 final size:10
Alignment explanation
Indices: 14105614--14105638 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14105604 AGACATAAAG
14105614 AAACTCAATA
1 AAACTCAATA
14105624 AAACTCAATA
1 AAACTCAATA
14105634 AAACT
1 AAACT
14105639 TCGAAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (10 bp):
AAACTCAATA
Found at i:14107679 original size:18 final size:18
Alignment explanation
Indices: 14107656--14107696 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
14107646 TTTGACAAAC
* *
14107656 AATGTGGCGGACTGTCCA
1 AATGTGGCAGACAGTCCA
14107674 AATGTGGCAGACAGTCCA
1 AATGTGGCAGACAGTCCA
14107692 AATGT
1 AATGT
14107697 AAGGTAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (18 bp):
AATGTGGCAGACAGTCCA
Found at i:14109306 original size:25 final size:24
Alignment explanation
Indices: 14109261--14109346 Score: 75
Period size: 25 Copynumber: 3.5 Consensus size: 24
14109251 TAAACATGTA
* *
14109261 AACGGGAAGCTCTTTTAAGTCTTAT
1 AACGGGAAGCT-TTGTAAGTCATAT
* *
14109286 AACGGGAAGCTTATGTGAGTCATGT
1 AACGGGAAGCTT-TGTAAGTCATAT
* *
14109311 AATGGGAAGCTTTGGAGAGTCAT-T
1 AACGGGAAGCTTTGTA-AGTCATAT
14109335 AATCGGGAAGCT
1 AA-CGGGAAGCT
14109347 CATGAGGAGC
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
24 6 0.12
25 44 0.88
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (24 bp):
AACGGGAAGCTTTGTAAGTCATAT
Found at i:14112004 original size:21 final size:21
Alignment explanation
Indices: 14111978--14112017 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14111968 TTTGACTCAA
*
14111978 TATTCTCATATATCATGTGTT
1 TATTCTCATATAACATGTGTT
*
14111999 TATTCTCTTATAACATGTG
1 TATTCTCATATAACATGTG
14112018 ACCATTATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (21 bp):
TATTCTCATATAACATGTGTT
Found at i:14114352 original size:27 final size:27
Alignment explanation
Indices: 14114322--14114418 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
14114312 ACCGGGACAA
* * *
14114322 TAAACACGGGGTAGTCTATTGAGATAG
1 TAAACACAGAGTAGTCTATCGAGATAG
* *
14114349 TAAACACAGAGTAGCCCATCGAGATAG
1 TAAACACAGAGTAGTCTATCGAGATAG
* * *
14114376 TAAACA-TGAGGTAGTCTATCGAAACAG
1 TAAACACAGA-GTAGTCTATCGAGATAG
14114403 TAAACACAGAGTAGTC
1 TAAACACAGAGTAGTC
14114419 CGTTGGGACA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 2 0.04
27 53 0.93
28 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (27 bp):
TAAACACAGAGTAGTCTATCGAGATAG
Found at i:14114434 original size:54 final size:54
Alignment explanation
Indices: 14114314--14114437 Score: 149
Period size: 54 Copynumber: 2.3 Consensus size: 54
14114304 TAGAGTCCAC
* * * *
14114314 CGGGACAATAAACACGGGGTAGTCTATTGAGATAGTAAACACAGAGTAGCCCAT
1 CGGGACAATAAACACGAGGTAGTCTATCGAAACAGTAAACACAGAGTAGCCCAT
* * * * * *
14114368 CGAGATAGTAAACATGAGGTAGTCTATCGAAACAGTAAACACAGAGTAGTCCGT
1 CGGGACAATAAACACGAGGTAGTCTATCGAAACAGTAAACACAGAGTAGCCCAT
*
14114422 TGGGACAATAAACACG
1 CGGGACAATAAACACG
14114438 GGGATTACGA
Statistics
Matches: 55, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.19
Consensus pattern (54 bp):
CGGGACAATAAACACGAGGTAGTCTATCGAAACAGTAAACACAGAGTAGCCCAT
Found at i:14117445 original size:13 final size:13
Alignment explanation
Indices: 14117429--14117455 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14117419 ACATTATAAA
14117429 ATAAAATTATTTT
1 ATAAAATTATTTT
14117442 ATAAAATTATTTT
1 ATAAAATTATTTT
14117455 A
1 A
14117456 ATTATATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATAAAATTATTTT
Found at i:14127145 original size:108 final size:109
Alignment explanation
Indices: 14126868--14127292 Score: 669
Period size: 109 Copynumber: 3.9 Consensus size: 109
14126858 AAAATTCAAG
* * * * * *
14126868 AGGATATTTAGCAATTTGG-CTAAATGTGAAATCAAAACCCAGTACCTTAGGGCACGTTTCTCGA
1 AGGATATTTAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
14126932 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTCTTTAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTT-TTTAAA
14126978 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
* * *
14127043 TTTCCAAATGCAAAATATTGCCTTA-TTTTGAAAAGTTTTGAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
* * *
14127086 AGGATATTAAG-TCATTTGGTGGAACAAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTTAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
14127150 ATTTCCAAACGCAAAACATTGTCTTATTTTTGAAAAGTTTTTAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
14127195 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
*
14127260 TTTCCAAACGCAAAATATTGCCTTA-TTTTGAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAA
14127293 TATTTTTCTT
Statistics
Matches: 290, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
107 1 0.00
108 95 0.33
109 112 0.39
110 81 0.28
111 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.30
Consensus pattern (109 bp):
AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
Found at i:14127263 original size:217 final size:218
Alignment explanation
Indices: 14126895--14127292 Score: 753
Period size: 217 Copynumber: 1.8 Consensus size: 218
14126885 GGCTAAATGT
*
14126895 GAAATCAAAACCCAGTACCTTAGGGCACGTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 GAAATCAAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
14126960 TTTGAAAAGTTCTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
66 TTTGAAAAGTTCTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
*
14127025 TAGGGCACGTTCCTCGAATTTCCAAATGCAAAATATTGCCTTATTTTGAAAAGTTTTGAAAAGGA
131 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAAGTTTTGAAAAGGA
14127090 TATTAAGTCATTTGGTGGAACAA
196 TATTAAGTCATTTGGTGGAACAA
* *
14127113 GAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGTCTTATT
1 GAAATCAAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
14127178 TTTGAAAAGTT-TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
66 TTTGAAAAGTTCTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
14127242 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAA
131 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAA
14127293 TATTTTTCTT
Statistics
Matches: 176, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
217 103 0.59
218 73 0.41
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (218 bp):
GAAATCAAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTTGAAAAGTTCTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAAGTTTTGAAAAGGA
TATTAAGTCATTTGGTGGAACAA
Found at i:14127790 original size:3 final size:3
Alignment explanation
Indices: 14127720--14127779 Score: 52
Period size: 3 Copynumber: 19.7 Consensus size: 3
14127710 TTAAAATTAC
* * *
14127720 ATA ATA ATTA TTA ATGA A-A AT- ATA ATG ATG ATA ATA ATA ATA ATA
1 ATA ATA A-TA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14127765 ATA ATA ATAA ATA AT
1 ATA ATA AT-A ATA AT
14127780 GCACATAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
2 4 0.08
3 37 0.77
4 7 0.15
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:14128522 original size:17 final size:17
Alignment explanation
Indices: 14128485--14128523 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
14128475 AAATAAATCG
* * *
14128485 GAAATAAAAAAACTTGC
1 GAAATAAAAAAAATAGA
14128502 GAAATAAAAAAAATAGA
1 GAAATAAAAAAAATAGA
14128519 GAAAT
1 GAAAT
14128524 CAAGTGGCGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.67, C:0.05, G:0.13, T:0.15
Consensus pattern (17 bp):
GAAATAAAAAAAATAGA
Found at i:14129618 original size:44 final size:44
Alignment explanation
Indices: 14129512--14130151 Score: 241
Period size: 44 Copynumber: 14.6 Consensus size: 44
14129502 CTCGGCCTGT
* ** * *
14129512 TCCACTGTAATCTCAGGGAGATAAGA-CC-TGA-TGCATTCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * *
14129553 TCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGT
1 TCCACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * *
14129597 TCCACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTTAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTTAATCTGC
* * **
14129641 TCCACTGTATTCTCAGGGAGATAAGA-CCTGATACGATCTTTGGTCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATCCT--T--TAT-TTTAATCTGC
* *** *
14129689 TCCACTGTAATCTCAGGGAGATAAGA-CC-TGA-TGCGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * ** *
14129730 TCTACTG-AAACTTCAGAGAGATAAGATCCTTGGTTTTAATCCGC
1 TCCACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * * *
14129774 TCCACTGTAATCTCATGGAAGATAGGAT--TACTAGCTTCAATCTGC
1 TCCACTGTAATCTCA-GGGAGATAAGATCCT-TTA-TTTTAATCTGC
* * ** **
14129819 TTCGCTGTAATCTCAGGGAGATAAGAT-CTGAAATCTTTCGGTCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATCCT-TTAT-TTT-AATCTGC
** * * * *
14129865 TCCACTGTAATCTCAGGGAGATAAGA-CC--TGGTGTGACCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * **
14129906 TCTACTGTAA-CTTCAGAGAGATAAGATCCTTCATTTTAATCCAC
1 TCCACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * * * *
14129950 TCCACTGTAATCTCAGGGAGATAGGATTAC-TAACTTCAAACTGC
1 TCCACTGTAATCTCAGGGAGATAAGA-TCCTTTATTTTAATCTGC
* * **** *
14129994 TCCGCTGTAATCTCAGGGAGATAAGAT-C-TGA-CACGATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
* * * * **
14130035 TCTATTGTAA-CTTCAGAGAGATAATATCCTTGGT-TTTTAATCCAC
1 TCCACTGTAATC-TCAGGGAGATAAGATCCTT--TATTTTAATCTGC
* * * * * *
14130080 TCCACTGTAATCTCAGGGAGATAGGATTAC-TAACTTCAATTTGC
1 TCCACTGTAATCTCAGGGAGATAAGA-TCCTTTATTTTAATCTGC
*
14130124 TCCGCTGTAATCTCAGGGAGATAAGATC
1 TCCACTGTAATCTCAGGGAGATAAGATC
14130152 AGAAATTCTT
Statistics
Matches: 438, Mismatches: 121, Indels: 78
0.69 0.19 0.12
Matches are distributed among these distances:
40 6 0.01
41 98 0.22
42 13 0.03
43 12 0.03
44 171 0.39
45 68 0.16
46 34 0.08
48 36 0.08
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCTGC
Found at i:14129696 original size:48 final size:48
Alignment explanation
Indices: 14129597--14129894 Score: 176
Period size: 48 Copynumber: 6.6 Consensus size: 48
14129587 TTTAATCCGT
* * * **
14129597 TCCACTGTAATCTCAGGGAGATAGGA--T--TACTAGCTTTAATCTGC
1 TCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTTTGGTCTGC
*
14129641 TCCACTGTATTCTCAGGGAGATAAGACCTGATACGATCTTTGGTCTGC
1 TCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTTTGGTCTGC
* *
14129689 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC--T--ACT-C
1 TCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTTTGGTCTGC
* * * ** *
14129732 T--ACTG-AAACTTCAGAGAGATAAGATCCT--T--GGT-TTTAATCCGC
1 TCCACTGTAATC-TCAGGGAGATAAGA-CCTGATACGATCTTTGGTCTGC
* * * * ***
14129774 TCCACTGTAATCTCATGGAAGATAGGA--T--TACTAGCTTCAATCTGC
1 TCCACTGTAATCTCA-GGGAGATAAGACCTGATACGATCTTTGGTCTGC
* * *
14129819 TTCGCTGTAATCTCAGGGAGATAAGATCTGA-A--ATCTTTCGGTCTGC
1 TCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTTT-GGTCTGC
14129865 TCCACTGTAATCTCAGGGAGATAAGACCTG
1 TCCACTGTAATCTCAGGGAGATAAGACCTG
14129895 GTGTGACCTA
Statistics
Matches: 197, Mismatches: 34, Indels: 44
0.72 0.12 0.16
Matches are distributed among these distances:
38 2 0.01
39 1 0.01
40 4 0.02
41 18 0.09
42 7 0.04
43 2 0.01
44 42 0.21
45 36 0.18
46 35 0.18
47 1 0.01
48 49 0.25
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (48 bp):
TCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTTTGGTCTGC
Found at i:14129920 original size:176 final size:176
Alignment explanation
Indices: 14129503--14130024 Score: 807
Period size: 176 Copynumber: 3.0 Consensus size: 176
14129493 CTGAAATTCC
* * *
14129503 TCGGCCTGTTCCACTGTAATCTCAGGGAGATAAGACCTGATGCATTCTACTCTACTGTAACTTCA
1 TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGGA-TCTACTCTACTGTAACTTCA
* *
14129568 GAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTT
65 GAGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTT
* * * *
14129633 TAATCTGCTCCACTGTATTCTCAGGGAGATAAGACCTGATACGATCTT
130 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATAC-ATCTT
*
14129681 T-GGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCA
1 TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATG-GATCTACTCTACTGTAACTTCA
** *
14129745 GAGAGATAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCATGGAAGATAGGATTACTAGCT
65 GAGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCA-GGGAGATAGGATTACTAGCT
*
14129810 TCAATCTGCTTCGCTGTAATCTCAGGGAGATAAGATCTGA-A-ATCTT
129 TCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATACATCTT
* *
14129856 TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTGTGACCTACTCTACTGTAACTTCA
1 TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATG-GATCTACTCTACTGTAACTTCA
* *
14129921 GAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTT
65 GAGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTT
*
14129986 CAAACTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
130 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
14130025 CACGATCTAC
Statistics
Matches: 317, Mismatches: 24, Indels: 9
0.91 0.07 0.03
Matches are distributed among these distances:
175 62 0.20
176 100 0.32
177 99 0.31
178 56 0.18
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (176 bp):
TCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGGATCTACTCTACTGTAACTTCAG
AGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATACATCTT
Found at i:14130125 original size:130 final size:129
Alignment explanation
Indices: 14129861--14130151 Score: 456
Period size: 130 Copynumber: 2.2 Consensus size: 129
14129851 ATCTTTCGGT
* * ****
14129861 CTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTGTGACCTACTCTACTGTAACTTCAGAGAG
1 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGACCTACTCTACTGTAACTTCAGAGAG
14129926 ATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAA
66 ATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAA
* *
14129990 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTATTGTAACTTCAGAGAG
1 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGACCTACTCTACTGTAACTTCAGAGAG
* ** *
14130055 ATAATATCCTTGGTTTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAT
66 ATAAGATCCTT-CATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAA
*
14130120 TTGCTCCGCTGTAATCTCAGGGAGATAAGATC
1 CTGCTCCGCTGTAATCTCAGGGAGATAAGATC
14130152 AGAAATTCTT
Statistics
Matches: 148, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
129 67 0.45
130 81 0.55
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (129 bp):
CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGACCTACTCTACTGTAACTTCAGAGAG
ATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAA
Found at i:14130166 original size:305 final size:305
Alignment explanation
Indices: 14129685--14130370 Score: 1070
Period size: 305 Copynumber: 2.2 Consensus size: 305
14129675 GATCTTTGGT
* * ** *
14129685 CTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAGAGAG
1 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAG
* *
14129750 ATAAGATCCTTGGTTTTAATCCGCTCCACTGTAATCTCATGGAAGATAGGATTACTAGCTTCAAT
66 ATAAGATCCTTGGTTTTAATCCACTCCACTGTAATCTCATGGAAGATAGGATTACTAACTTCAAT
* * *
14129815 CTGCTTCGCTGTAATCTCAGGGAGATAAGATCTGAAATCTTTCGGTCTGCTCCACTGTAATCTCA
131 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCAGAAATCTTTCGGTCTACTCCACTGTAATCTCA
* * * ****
14129880 GGGAGATAAGACCTGGTGTGACCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAA
196 GAGAAATAAGACCAGACACGACCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAA
14129945 TCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAA
261 TCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAA
*
14129990 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTATTGTAACTTCAGAGAG
1 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAG
* *
14130055 ATAATATCCTTGGTTTTTAATCCACTCCACTGTAATCTCA-GGGAGATAGGATTACTAACTTCAA
66 ATAAGATCCTTGG-TTTTAATCCACTCCACTGTAATCTCATGGAAGATAGGATTACTAACTTCAA
* *
14130119 TTTGCTCCGCTGTAATCTCAGGGAGATAAGATCAGAAAT-TCTTCGGTCTATTCCACTGTAATCT
130 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCAGAAATCT-TTCGGTCTACTCCACTGTAATCT
** ** *
14130183 CAGAGAAATAAGACCAGACACGATTTACTCTGTTGTAACTTCAGAGAGATAAGATCTTTCATTTT
194 CAGAGAAATAAGACCAGACACGACCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTT
*
14130248 AATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAT
259 AATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAA
* *
14130295 CTACTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAAAG
1 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAG
14130360 ATAAGATCCTT
66 ATAAGATCCTT
14130371 TATTCAATCA
Statistics
Matches: 347, Mismatches: 32, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
304 1 0.00
305 321 0.93
306 25 0.07
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (305 bp):
CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAG
ATAAGATCCTTGGTTTTAATCCACTCCACTGTAATCTCATGGAAGATAGGATTACTAACTTCAAT
CTGCTCCGCTGTAATCTCAGGGAGATAAGATCAGAAATCTTTCGGTCTACTCCACTGTAATCTCA
GAGAAATAAGACCAGACACGACCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAA
TCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAAA
Found at i:14130283 original size:175 final size:176
Alignment explanation
Indices: 14129998--14130326 Score: 543
Period size: 175 Copynumber: 1.9 Consensus size: 176
14129988 AACTGCTCCG
* * * * *
14129998 CTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTATTGTAACTTCAGAGAGATAATATC
1 CTGTAATCTCAGAGAAATAAGACCAGACACGATCTACTCTATTGTAACTTCAGAGAGATAAGATC
** * *
14130063 CTTGGTTTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATTTGCTCCG
66 CTTGCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCG
14130128 CTGTAATCTCAGGGAGATAAGATCAGAAATTCTTCGGTCTATTCCA
131 CTGTAATCTCAGGGAGATAAGATCAGAAATTCTTCGGTCTATTCCA
* *
14130174 CTGTAATCTCAGAGAAATAAGACCAGACACGATTTACTCTGTTGTAACTTCAGAGAGATAAGAT-
1 CTGTAATCTCAGAGAAATAAGACCAGACACGATCTACTCTATTGTAACTTCAGAGAGATAAGATC
*
14130238 CTTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCG
66 CTTGCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCG
14130303 CTGTAATCTCAGGGAGATAAGATC
131 CTGTAATCTCAGGGAGATAAGATC
14130327 TGACACGATC
Statistics
Matches: 141, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
175 84 0.60
176 57 0.40
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (176 bp):
CTGTAATCTCAGAGAAATAAGACCAGACACGATCTACTCTATTGTAACTTCAGAGAGATAAGATC
CTTGCATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTACTCCG
CTGTAATCTCAGGGAGATAAGATCAGAAATTCTTCGGTCTATTCCA
Found at i:14130341 original size:129 final size:130
Alignment explanation
Indices: 14130123--14130367 Score: 321
Period size: 129 Copynumber: 1.9 Consensus size: 130
14130113 CTTCAATTTG
* * ** *
14130123 CTCCGCTGTAATCTCAGGGAGATAAGATCAGAAATTCTTCGGTCTATTCCACTGTAATCTCAGAG
1 CTCCACTGTAATCTCAGGGAGATAAGATCACAAA-TCTTCAATCTACTCCACTGTAATCTCAGAG
* ** *
14130188 AAATAAGACCAGACACGATTTACTCTGTTGTAACTTCAGAGAGATAAGATCTTTCATTTTAATCC
65 AAATAAGACCAGACACGATCTACTCTACTGTAACTTCAGAAAGATAAGATCTTTCATTTTAATCC
14130253 A
130 A
* * * * *
14130254 CTCCACTGTAATCTCAGGGAGATAGGATTACTAA-CTTCAATCTACTCCGCTGTAATCTCAGGGA
1 CTCCACTGTAATCTCAGGGAGATAAGATCACAAATCTTCAATCTACTCCACTGTAATCTCAGAGA
* * *
14130318 GATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAAAGATAAGATC
66 AATAAGACCAGACACGATCTACTCTACTGTAACTTCAGAAAGATAAGATC
14130368 CTTTATTCAA
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
129 68 0.70
131 29 0.30
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (130 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCACAAATCTTCAATCTACTCCACTGTAATCTCAGAGA
AATAAGACCAGACACGATCTACTCTACTGTAACTTCAGAAAGATAAGATCTTTCATTTTAATCCA
Found at i:14130620 original size:86 final size:86
Alignment explanation
Indices: 14130389--14130715 Score: 431
Period size: 87 Copynumber: 3.8 Consensus size: 86
14130379 CAGCTTCACT
* * * * * *
14130389 GCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTCAACGCAGGAAGGCAAGATCT
1 GCAACCGATGGAGACAAAGC-TTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCCAGATCT
* * *
14130454 GCTATCTTCAATCAGCTCCACTA
65 GCTATCTTCAACCAGTTCCAC-C
*
14130477 G-AACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCCAGATCT
1 GCAACCGATGGAGACAAAGC-TTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCCAGATCT
14130541 GCTATCTTCAACCAGTTCCACC
65 GCTATCTTCAACCAGTTCCACC
* * *
14130563 GCAACTGGTGGAGACAAAGCTTGTTTTCAATCTGCTTCGCTGTTAACGCGGGAAGGCCAGATCTG
1 GCAACCGATGGAGACAAAGCTTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCCAGATCTG
14130628 CTATCTTCAACCAGTTCCACC
66 CTATCTTCAACCAGTTCCACC
* * * * * *
14130649 GCAACCGATGGAGACAAAGCTTGTATCTTCGATCTGCTTCACTGTCAATGCAAGAAGGCAAGATC
1 GCAACCGATGGAGACAAAGCTTGT-T-TTCAATCTGCTTCGCTGTTAACGCAGGAAGGCCAGATC
14130714 TG
64 TG
14130716 TTGTCTTTGA
Statistics
Matches: 215, Mismatches: 21, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
86 88 0.41
87 93 0.43
88 34 0.16
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (86 bp):
GCAACCGATGGAGACAAAGCTTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCCAGATCTG
CTATCTTCAACCAGTTCCACC
Found at i:14130755 original size:45 final size:45
Alignment explanation
Indices: 14130674--14130760 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
14130664 AAAGCTTGTA
* * *
14130674 TCTTCGATCTGCTTCACTGTCAATGCAAGAAGGCAAGATCTGTTG
1 TCTTCGATCTGCTTCACAGTCAATACAAGAAAGCAAGATCTGTTG
* * * *
14130719 TCTTTGATCTGCTTCGCAGTCAGTACAGGAAAGCAAGATCTG
1 TCTTCGATCTGCTTCACAGTCAATACAAGAAAGCAAGATCTG
14130761 ACGTCTTCAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (45 bp):
TCTTCGATCTGCTTCACAGTCAATACAAGAAAGCAAGATCTGTTG
Found at i:14142705 original size:108 final size:109
Alignment explanation
Indices: 14142435--14142859 Score: 660
Period size: 109 Copynumber: 3.9 Consensus size: 109
14142425 AAAATTCAAG
* * * * * *
14142435 AGGATATTTAGCAATTTGG-CTAAACGTGAAATCGAAACCCAGCACCTTAGGGCACATTTCTCGA
1 AGGATATTTAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
14142499 ATTTCCAAACGTAAAACATTGCCTTATTTTTGAAAAGTTTTTTAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAG-TTTTTAAA
14142545 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
* * * *
14142610 TTTCCAAACGTAAAATATTGCCATA-TTTTGAAAAGTTTTGAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
* * *
14142653 AGGATATTAAG-TCATTTGGTGGAACAAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTTAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
14142717 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
65 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
14142762 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
*
14142827 TTTCCAAACGCAAAATATTGCCTTA-TTTTGAAA
66 TTTCCAAACGCAAAACATTGCCTTATTTTTGAAA
14142860 TATTTTCCTT
Statistics
Matches: 291, Mismatches: 20, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
107 1 0.00
108 97 0.33
109 111 0.38
110 81 0.28
111 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (109 bp):
AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTAAA
Found at i:14142834 original size:217 final size:218
Alignment explanation
Indices: 14142462--14142859 Score: 735
Period size: 217 Copynumber: 1.8 Consensus size: 218
14142452 GGCTAAACGT
* *
14142462 GAAATCGAAACCCAGCACCTTAGGGCACATTTCTCGAATTTCCAAACGTAAAACATTGCCTTATT
1 GAAATCGAAACCCAGCACCTTAGGGCACATTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
14142527 TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
66 TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
*
14142592 TAGGGCACGTTCCTCGAATTTCCAAACGTAAAATATTGCCATATTTTGAAAAGTTTTGAAAAGGA
131 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCATATTTTGAAAAGTTTTGAAAAGGA
14142657 TATTAAGTCATTTGGTGGAACAA
196 TATTAAGTCATTTGGTGGAACAA
* *
14142680 GAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 GAAATCGAAACCCAGCACCTTAGGGCACATTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
14142745 TTTGAAAAG-TTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
66 TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
*
14142809 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAA
131 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCATATTTTGAAA
14142860 TATTTTCCTT
Statistics
Matches: 174, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
217 104 0.60
218 70 0.40
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (218 bp):
GAAATCGAAACCCAGCACCTTAGGGCACATTCCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCATATTTTGAAAAGTTTTGAAAAGGA
TATTAAGTCATTTGGTGGAACAA
Found at i:14143358 original size:3 final size:3
Alignment explanation
Indices: 14143288--14143347 Score: 52
Period size: 3 Copynumber: 19.7 Consensus size: 3
14143278 TTAAAATTAC
* * *
14143288 ATA ATA ATTA TTA ATGA A-A AT- ATA ATG ATG ATA ATA ATA ATA ATA
1 ATA ATA A-TA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14143333 ATA ATA ATAA ATA AT
1 ATA ATA AT-A ATA AT
14143348 GCACATAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
2 4 0.08
3 37 0.77
4 7 0.15
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:14146352 original size:27 final size:26
Alignment explanation
Indices: 14146285--14146382 Score: 133
Period size: 28 Copynumber: 3.6 Consensus size: 26
14146275 TAATGAGATT
14146285 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATT-AA
*
14146312 ATGCACTAAGTGTGCGAGTATAATGTAA
1 A-GCACTAAGTGTGCGAGTTTAAT-TAA
*
14146340 AGCACTAAGTGTGCGAGTTTGATTATTA
1 AGCACTAAGTGTGCGAGTTTAATTA--A
14146368 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
14146383 TACTTATTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
26 2 0.03
27 21 0.33
28 40 0.62
29 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGAGTTTAATTAA
Found at i:14147435 original size:47 final size:47
Alignment explanation
Indices: 14147369--14147703 Score: 415
Period size: 47 Copynumber: 7.1 Consensus size: 47
14147359 CCAAATTTGA
14147369 TGTCC-ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* *
14147415 TGTCCAATTTTGAATGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * *
14147462 TGTCCAATTTTGAGTGTACTAATGCTGTCCATTTTAATGTATGATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
*
14147509 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * * * *
14147556 TGTCCGATTATGAGTATATTTAAGCTGTCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * *
14147603 TGTCCAATTTTGAGTATATTTAAGCTGTCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * ** *
14147650 TGTCC-ATTTTGAGCATATT-ATTGCTGTCCAATTTGTTGAATAATTGC
1 TGTCCAATTTTGAGTATATTGA-TGCTGTCCATTTTAATGTATAA-TGC
14147697 TGTCCAA
1 TGTCCAA
14147704 AACAGGGTTG
Statistics
Matches: 261, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.00
46 36 0.14
47 223 0.85
48 1 0.00
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (47 bp):
TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
Found at i:14147699 original size:23 final size:23
Alignment explanation
Indices: 14147390--14147703 Score: 121
Period size: 22 Copynumber: 13.4 Consensus size: 23
14147380 AGTATATTGA
* * *
14147390 TGCTGTCCATTTTAATGTATAA-
1 TGCTGTCCAATTTGATGAATAAT
* *
14147412 TGCTGTCCAATTTTGAATGTATTGA-
1 TGCTGTCCAA-TTTG-ATG-AATAAT
* * *
14147437 TGCTGTCCATTTTAATGTATAA-
1 TGCTGTCCAATTTGATGAATAAT
*
14147459 TGCTGTCCAATTTTGAGTGTACTAA-
1 TGCTGTCCAA-TTTGA-TG-AATAAT
* * * *
14147484 TGCTGTCCATTTTAATGTATGA-
1 TGCTGTCCAATTTGATGAATAAT
* *
14147506 TGCTGTCCAATTTTGAGTGTATTGA-
1 TGCTGTCCAA-TTTGA-TG-AATAAT
* * *
14147531 TGCTGTCCATTTTAATGTATAA-
1 TGCTGTCCAATTTGATGAATAAT
* * *
14147553 TGCTGTCCGATTATGA-GTATATT
1 TGCTGTCCAATT-TGATGAATAAT
* *
14147576 TAAGCTGTCTAATTTGATGTATAA-
1 T--GCTGTCCAATTTGATGAATAAT
* *
14147600 TGCTGTCCAATTTTGA-GTATATT
1 TGCTGTCCAA-TTTGATGAATAAT
* *
14147623 TAAGCTGTCTAATTTGATGTATAA-
1 T--GCTGTCCAATTTGATGAATAAT
* *
14147647 TGCTGTCCATTTTGA-GCATATTAT
1 TGCTGTCCAATTTGATG-A-ATAAT
*
14147671 TGCTGTCCAATTTGTTGAATAAT
1 TGCTGTCCAATTTGATGAATAAT
14147694 TGCTGTCCAA
1 TGCTGTCCAA
14147704 AACAGGGTTG
Statistics
Matches: 223, Mismatches: 46, Indels: 45
0.71 0.15 0.14
Matches are distributed among these distances:
21 1 0.00
22 73 0.33
23 44 0.20
24 42 0.19
25 63 0.28
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (23 bp):
TGCTGTCCAATTTGATGAATAAT
Found at i:14159685 original size:23 final size:24
Alignment explanation
Indices: 14159636--14159686 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
14159626 TTTTTAGAAG
**
14159636 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGTATTTATTAACATAATAT
*
14159660 ATTTAGTATTT-TTAACATAATTT
1 ATTTAGTATTTATTAACATAATAT
14159683 ATTT
1 ATTT
14159687 GACCTACGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (24 bp):
ATTTAGTATTTATTAACATAATAT
Found at i:14160396 original size:25 final size:23
Alignment explanation
Indices: 14160355--14160414 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
14160345 TATGCGGAAT
14160355 AACATGAGCACAAAAGTACTAAGA
1 AACATGAGCACAAAAGTACT-AGA
** * *
14160379 AATCATGAGCACTGAAGTGCTGGA
1 AA-CATGAGCACAAAAGTACTAGA
14160403 AACATGAGCACA
1 AACATGAGCACA
14160415 TGAGTATCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 9 0.30
24 6 0.20
25 15 0.50
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (23 bp):
AACATGAGCACAAAAGTACTAGA
Found at i:14161662 original size:46 final size:46
Alignment explanation
Indices: 14161561--14161859 Score: 507
Period size: 46 Copynumber: 6.6 Consensus size: 46
14161551 TACGTATGAT
* * *
14161561 CACTTATCAC-TTGTC-CCTAATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14161604 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
14161650 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14161696 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
14161742 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
14161788 CACTTATCATTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14161834 CACTTATCACTTTGTCAC-TGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
14161860 AGTATTCAAA
Statistics
Matches: 245, Mismatches: 8, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
43 10 0.04
44 5 0.02
45 27 0.11
46 203 0.83
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:14162701 original size:14 final size:14
Alignment explanation
Indices: 14162682--14162712 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
14162672 CAAATAGTAC
14162682 AGTTTATTCTTTAA
1 AGTTTATTCTTTAA
14162696 AGTTTATTCTTTAA
1 AGTTTATTCTTTAA
14162710 AGT
1 AGT
14162713 CTCCCCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.55
Consensus pattern (14 bp):
AGTTTATTCTTTAA
Found at i:14194524 original size:24 final size:24
Alignment explanation
Indices: 14194497--14194548 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
14194487 TTAGTAAGTC
*
14194497 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
14194521 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
14194545 AAAT
1 AAAT
14194549 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:14196494 original size:24 final size:24
Alignment explanation
Indices: 14196467--14196518 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
14196457 TTAGTAAGTC
*
14196467 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
14196491 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
14196515 AAAT
1 AAAT
14196519 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:14196877 original size:46 final size:45
Alignment explanation
Indices: 14196810--14197053 Score: 207
Period size: 46 Copynumber: 5.6 Consensus size: 45
14196800 TTTGAGTACT
* * *
14196810 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGATAG-TTTAGCTACACTTA
14196856 TCTGATCAAGTGAAAAAGTG---A-T-A-AG--T-GCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGATAGTTTAGCTACACTTA
* *
14196892 TCTGATCAAGTGACAAAGTGATAAGTGATAGTTTCGGCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGATAGTTT-AGCTACACTTA
14196938 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTG---A---AAAAGTGATAAGTGATAG-TTTAGCTACACTTA
* *
14196990 TCTGATCAAGAGACAAAGTGATAA--G-T-G----GCTACACTTA
1 TCTGATCAAGTGAAAAAGTGATAAGTGATAGTTTAGCTACACTTA
* *
14197027 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGAAAAAGTGATAAGTG
14197054 GCTACACTTA
Statistics
Matches: 171, Mismatches: 8, Indels: 45
0.76 0.04 0.20
Matches are distributed among these distances:
36 29 0.17
37 35 0.20
39 2 0.01
40 3 0.02
41 1 0.01
42 4 0.02
43 2 0.01
44 2 0.01
46 50 0.29
49 2 0.01
52 38 0.22
53 3 0.02
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (45 bp):
TCTGATCAAGTGAAAAAGTGATAAGTGATAGTTTAGCTACACTTA
Found at i:14196887 original size:36 final size:36
Alignment explanation
Indices: 14196846--14196918 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
14196836 GGTAGCTTTA
14196846 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
14196882 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
14196918 G
1 G
14196919 ATAGTTTCGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:14196964 original size:52 final size:52
Alignment explanation
Indices: 14196898--14197016 Score: 177
Period size: 52 Copynumber: 2.2 Consensus size: 52
14196888 CTTATCTGAT
* *
14196898 CAAGTGACAAAGTGATAAGTGATAG-TTTCGGCTACACTTATCTGATCAAGTGA
1 CAAGTGA-AAAGTGATAAGTGATAGCTTT-AGCTACACTTATCTGATCAAGAGA
14196951 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
*
14197003 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
14197017 GCTACACTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
52 40 0.66
53 21 0.34
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (52 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
Found at i:14197024 original size:37 final size:37
Alignment explanation
Indices: 14196980--14197125 Score: 251
Period size: 37 Copynumber: 4.0 Consensus size: 37
14196970 GATAGCTTTA
14196980 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
14197017 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
14197054 GCTACACTTATCTGATCAAGAAATAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
14197091 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
14197126 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 12 0.12
36 3 0.03
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:14198755 original size:3 final size:3
Alignment explanation
Indices: 14198747--14198778 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14198737 TTAAAAGAGT
14198747 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14198779 TTGAAAACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14199687 original size:14 final size:15
Alignment explanation
Indices: 14199663--14199703 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
14199653 TTTCGAAAAG
14199663 AGAAA-AAAAATA-A
1 AGAAAGAAAAATAGA
14199676 AGAAAGAAAAATAGA
1 AGAAAGAAAAATAGA
14199691 A-AAAG-AAAATAGA
1 AGAAAGAAAAATAGA
14199704 TATACCGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 13 0.50
14 11 0.42
15 2 0.08
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (15 bp):
AGAAAGAAAAATAGA
Found at i:14202140 original size:9 final size:9
Alignment explanation
Indices: 14202126--14202171 Score: 56
Period size: 9 Copynumber: 4.7 Consensus size: 9
14202116 TTTGAGCCAA
14202126 AAAAAAAAG
1 AAAAAAAAG
14202135 AAAAAAAGAG
1 AAAAAAA-AG
14202145 ATGAAAAAAATG
1 A--AAAAAAA-G
14202157 AAAAAAAAG
1 AAAAAAAAG
14202166 AAAAAA
1 AAAAAA
14202172 TAAAAAAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
9 14 0.42
10 10 0.30
11 1 0.03
12 8 0.24
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:14202151 original size:23 final size:22
Alignment explanation
Indices: 14202124--14202185 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
14202114 ACTTTGAGCC
14202124 AAAAAAAAAAG-AAAAAAAGAGA
1 AAAAAAAAAAGAAAAAAAAGA-A
** *
14202146 TGAAAAAAATGAAAAAAAAGAA
1 AAAAAAAAAAGAAAAAAAAGAA
*
14202168 AAAATAAAAAAGTAAAAA
1 AAAA-AAAAAAGAAAAAA
14202186 TGGAGAGGCT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
22 11 0.35
23 20 0.65
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.06
Consensus pattern (22 bp):
AAAAAAAAAAGAAAAAAAAGAA
Found at i:14203779 original size:44 final size:43
Alignment explanation
Indices: 14203662--14204431 Score: 384
Period size: 44 Copynumber: 17.8 Consensus size: 43
14203652 TCGTGTCAAG
* ** * *
14203662 TCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGTA-GT-A-A
*
14203708 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-TAGTAA
* * * * *
14203752 TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGT--AGTAA
* * * * * * *
14203796 TCTTATCTCTCT-AAAGTTATAGTAGAGTAGATCG-TGTCAG--A
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGT-AGTAA
*
14203837 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-TAGTAA
** * * *
14203881 TCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATT-GAA-GTAGTAA
* ** * * * *
14203925 TCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCG-CGTCAG--G
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGT-AGTAA
* * * * *
14203966 TCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGTA-GT-A-A
*
14204012 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-TAGTAA
* * * * * *
14204056 TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAATGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGT-AGTAA
* * * * *
14204100 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-TGTCAG--A
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGT-AGTAA
* *
14204141 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAATAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-TAGTAA
* ** * * *
14204185 TCATATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGT--AGTAA
* * * * *
14204229 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCG-TGTCA--AA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGT-AGTAA
* **
14204270 TCTTATCTTCCTGAGATTACAGCAGAG-ACGATTGAAGATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCA-GATTGAAG-TAGTAA
** * * * *
14204314 TCCCATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG-GA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGT--AGTAA
* * * * * * *
14204358 TCTTATCTCTCT-AAAGTTACAGTAGAGAAGATCGTA-TCAG--G
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGT-AGTAA
*
14204399 TCTTATCTCCCTGATATTACAGTGGAGCAGATT
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATT
14204432 AAAACAAAGG
Statistics
Matches: 543, Mismatches: 139, Indels: 89
0.70 0.18 0.12
Matches are distributed among these distances:
40 1 0.00
41 131 0.24
42 22 0.04
43 19 0.03
44 288 0.53
45 11 0.02
46 69 0.13
47 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGTAGTAA
Found at i:14203858 original size:129 final size:128
Alignment explanation
Indices: 14203703--14204044 Score: 495
Period size: 129 Copynumber: 2.6 Consensus size: 128
14203693 CCGAAGAATT
*
14203703 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-TAGTAATCTTATCTCCCTGAGA
* * *
14203768 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTATAGTAGAGTAGATCGTG
65 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCG
14203832 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCTTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-TAGTAATCTTATCTCCCTGAGA
* * *
14203897 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCG
65 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCG
* * * * * * *
14203961 TCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATTTCAGATCTTATCTCCCTGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTA-GT-A-ATCTTATCTCCCTGA
* *
14204026 GATTACAGCGGAGCAGATT
63 GATTACAGTGGAGCGGATT
14204045 GAAGCTAGTA
Statistics
Matches: 192, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
128 1 0.01
129 159 0.83
130 1 0.01
131 31 0.16
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (128 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTAGTAATCTTATCTCCCTGAGAT
TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGCAGAGTAGATCGCG
Found at i:14203984 original size:85 final size:85
Alignment explanation
Indices: 14203881--14204510 Score: 433
Period size: 85 Copynumber: 7.3 Consensus size: 85
14203871 AAGTTAGTAA
** *
14203881 TCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
* *
14203946 GCAGAGTAGATCGCGTCAGG
66 GTAGAGTAGATCGAGTCAGG
* * * ** *
14203966 TCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATTTCA-GATCTTATCTCCCTG-AGAT
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA-TAAAGGATCTTATCTCTCTGAAG-T
** * * *
14204029 TACAGCGGAGCAGATTGAAG-CTAGTAA
62 TACAGTAGAGTAGATCG-AGTC-AG--G
* * *
14204056 TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
* *
14204121 GTAGAGTAGATCGTGTCAGA
66 GTAGAGTAGATCGAGTCAGG
* * * * ** * *
14204141 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAATAATCATATCTCCCTG-AGATTAC
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAG-TTAC
* * ** * *
14204205 AGTGGAGTGGATTAAAATAAAGG
65 AGTAGAGTAGA-TCGAGT-CAGG
* * * **** *
14204228 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCGTGTCAA--ATCTTATCT-TCCTG-AGAT
1 -TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCT-CTGAAG-T
* * *
14204287 TACAGCAGAG-ACGATTGAAGAT-AGTAA
62 TACAGTAGAGTA-GATCG-AG-TCAG--G
** * *
14204314 TCCCATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
*
14204379 GTAGAGAAGATCGTA-TCAGG
66 GTAGAGTAGATCG-AGTCAGG
* * *
14204399 TCTTATCTCCCTGATATTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
*
14204464 GTAGCGTAGATCGCA-TCAGG
66 GTAGAGTAGATCG-AGTCAGG
* * * *
14204484 TTTTACCTCCCTGTGGTTACAGTGGAG
1 TCTTATCTCCCTGAGATTACAGTGGAG
14204511 TACATTGAAG
Statistics
Matches: 424, Mismatches: 91, Indels: 60
0.74 0.16 0.10
Matches are distributed among these distances:
84 5 0.01
85 235 0.55
86 14 0.03
87 47 0.11
88 87 0.21
89 9 0.02
90 27 0.06
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (85 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACA
GTAGAGTAGATCGAGTCAGG
Found at i:14204013 original size:175 final size:174
Alignment explanation
Indices: 14203832--14204211 Score: 586
Period size: 175 Copynumber: 2.2 Consensus size: 174
14203822 GTAGATCGTG
* *
14203832 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCTTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* *
14203897 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
* * *
14203962 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATT-
131 CAGATCTTATCTCCCTGAGATTACAGCGGAACAGACTGAAG--TTA
14204007 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* * *
14204072 TTACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGT
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
* *
14204137 CAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAA
131 CAGATCTTATCTCCCTGAGATTACAGCGGAACAGACTGAAGTT-A
* *
14204182 T-A-ATCATATCTCCCTGAGATTACAGTGGAG
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAG
14204212 TGGATTAAAA
Statistics
Matches: 189, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
173 28 0.15
174 1 0.01
175 160 0.85
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (174 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
CAGATCTTATCTCCCTGAGATTACAGCGGAACAGACTGAAGTTA
Found at i:14204164 original size:129 final size:129
Alignment explanation
Indices: 14204007--14204431 Score: 690
Period size: 129 Copynumber: 3.3 Consensus size: 129
14203997 CTGAAGAATT
*
14204007 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
*
14204072 TTACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * *
14204136 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAATAATCATATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
*
14204201 TTACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * * *
14204265 TCAAATCTTATCTTCCTGAGATTACAGCAGAG-ACGATTGAAGATAGTAATCCCATCTCCCTGAG
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCA-GATTGAAGATAGTAATCCTATCTCCCTGAG
* * *
14204329 ATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGAAGATCGTA
65 ATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * *
14204394 TCAGGTCTTATCTCCCTGATATTACAGTGGAGCAGATT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATT
14204432 AAAACAAAGG
Statistics
Matches: 272, Mismatches: 22, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
128 1 0.00
129 270 0.99
130 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30
Consensus pattern (129 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
Found at i:14204165 original size:304 final size:304
Alignment explanation
Indices: 14203615--14204291 Score: 1230
Period size: 304 Copynumber: 2.2 Consensus size: 304
14203605 GGAGCGGAAG
*
14203615 AAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTGTCAAGTCTTATCTCCCTGAGATT
1 AAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTGTCAAGTCTTATTTCCCTGAGATT
14203680 ACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
66 ACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
14203745 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAA
131 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAA
*
14203810 AGTTATAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
196 AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
* *
14203875 TAGTAATCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAAT
261 TAATAATCATATCTCCCTGAGATTACAGTGGAGTGGATTAAAAT
* * *
14203919 GAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATTTCCCTGAGATT
1 AAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTGTCAAGTCTTATTTCCCTGAGATT
*
14203984 ACAGTGGAACAGACTGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
66 ACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
* *
14204049 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGA
131 CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAA
14204114 AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
196 AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
14204179 TAATAATCATATCTCCCTGAGATTACAGTGGAGTGGATTAAAAT
261 TAATAATCATATCTCCCTGAGATTACAGTGGAGTGGATTAAAAT
* *
14204223 AAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAAATCTTATCTT-CCTGAGAT
1 AAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTGTCAAGTCTTAT-TTCCCTGAGAT
14204287 TACAG
65 TACAG
14204292 CAGAGACGAT
Statistics
Matches: 357, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
304 355 0.99
305 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (304 bp):
AAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTGTCAAGTCTTATTTCCCTGAGATT
ACAGTGGAACAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
CTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAA
AGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGT
TAATAATCATATCTCCCTGAGATTACAGTGGAGTGGATTAAAAT
Found at i:14204463 original size:44 final size:44
Alignment explanation
Indices: 14204330--14204465 Score: 129
Period size: 44 Copynumber: 3.2 Consensus size: 44
14204320 CTCCCTGAGA
* * **
14204330 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAG
1 TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAG
* * *** *
14204374 TTACAGTAGAGAAGATCGTATC--AGG-TCTTATCTC-CCTGATA-
1 TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCC-GA-AG
14204415 TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAG
1 TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAG
14204459 TTACAGT
1 TTACAGT
14204466 AGCGTAGATC
Statistics
Matches: 69, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.01
41 26 0.38
42 4 0.06
43 4 0.06
44 32 0.46
45 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (44 bp):
TTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCTCCGAAG
Found at i:14208880 original size:24 final size:24
Alignment explanation
Indices: 14208853--14208913 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
14208843 TAAATATATT
*
14208853 ATATGTTATTATTATATCATTTTA
1 ATATGTTATTATTATATAATTTTA
**
14208877 ATATGAAAATT-TTATATAATTTTA
1 ATATG-TTATTATTATATAATTTTA
*
14208901 ATATATTATTATT
1 ATATGTTATTATT
14208914 TAAAATAACA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
23 3 0.10
24 23 0.79
25 3 0.10
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (24 bp):
ATATGTTATTATTATATAATTTTA
Found at i:14210915 original size:13 final size:13
Alignment explanation
Indices: 14210899--14210946 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
14210889 ATTTATTTGA
*
14210899 TTTAATTATTGTT
1 TTTAATTATTATT
* *
14210912 TTTAAATATTATA
1 TTTAATTATTATT
14210925 TTTAATATATTATT
1 TTTAAT-TATTATT
14210939 TTT-ATTAT
1 TTTAATTAT
14210947 ATTCAATAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 3 0.10
13 17 0.59
14 9 0.31
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (13 bp):
TTTAATTATTATT
Found at i:14210936 original size:14 final size:14
Alignment explanation
Indices: 14210898--14210949 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
14210888 TATTTATTTG
*
14210898 ATTTAAT-TATTGT
1 ATTTAATATATTAT
*
14210911 TTTTAA-ATATTAT
1 ATTTAATATATTAT
14210924 ATTTAATATATTAT
1 ATTTAATATATTAT
* *
14210938 TTTTATTATATT
1 ATTTAATATATT
14210950 CAATAGAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
13 15 0.47
14 17 0.53
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (14 bp):
ATTTAATATATTAT
Found at i:14211288 original size:9 final size:9
Alignment explanation
Indices: 14211274--14211298 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14211264 ATTTTTAAAA
14211274 ATTAAAATT
1 ATTAAAATT
14211283 ATTAAAATT
1 ATTAAAATT
14211292 ATTAAAA
1 ATTAAAA
14211299 AAGTATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
ATTAAAATT
Found at i:14217436 original size:143 final size:143
Alignment explanation
Indices: 14217178--14217449 Score: 499
Period size: 143 Copynumber: 1.9 Consensus size: 143
14217168 TTTACCTTGA
*
14217178 TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTGATGGTGGACAC
1 TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTAATGGTGGACAC
*
14217243 TTGATTCAAGTGTTTGATTGTCTTATGTTGCCCCACTCGAGCTTTAGGTTTATTGGTTATTAGGG
66 TTGATTCAAGTGTTTGATTGTCTTATGTTGCCCCACTCGAGCTTTAGGTTTATTGGCTATTAGGG
14217308 CCTTGTTTTGTAT
131 CCTTGTTTTGTAT
*
14217321 TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTAATGGTGGAGAC
1 TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTAATGGTGGACAC
* *
14217386 TTGATTCTAGTGTTTGATTGTCTTATGTTGCCCCACTCGCGCTTTAGGTTTATTGGCTATTAGG
66 TTGATTCAAGTGTTTGATTGTCTTATGTTGCCCCACTCGAGCTTTAGGTTTATTGGCTATTAGG
14217450 AGCATTGGCT
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
143 124 1.00
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.42
Consensus pattern (143 bp):
TGGTTGTCTACCATTGTAATGGCTGAGTCATCCTTAGCTCCCTTTCGATGTTTAATGGTGGACAC
TTGATTCAAGTGTTTGATTGTCTTATGTTGCCCCACTCGAGCTTTAGGTTTATTGGCTATTAGGG
CCTTGTTTTGTAT
Found at i:14224020 original size:18 final size:19
Alignment explanation
Indices: 14223960--14224021 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
14223950 AAAAATATAA
14223960 ATTTTGAAATTTTTATAAAT
1 ATTTTG-AATTTTTATAAAT
* *
14223980 ATTTTGAATTTTAAAAAAT
1 ATTTTGAATTTTTATAAAT
* *
14223999 ATTTTGATTTTTTTTAAA-
1 ATTTTGAATTTTTATAAAT
14224017 ATTTT
1 ATTTT
14224022 TTAAATTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
18 5 0.14
19 25 0.69
20 6 0.17
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
ATTTTGAATTTTTATAAAT
Found at i:14224052 original size:10 final size:11
Alignment explanation
Indices: 14224025--14224053 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14224015 AAATTTTTTA
14224025 AATTTTTTTGT
1 AATTTTTTTGT
14224036 AATTTTTTTGT
1 AATTTTTTTGT
14224047 AATTTTT
1 AATTTTT
14224054 GTTGAGAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (11 bp):
AATTTTTTTGT
Found at i:14226038 original size:25 final size:25
Alignment explanation
Indices: 14226010--14226138 Score: 93
Period size: 25 Copynumber: 5.2 Consensus size: 25
14226000 CACTCTCTCA
** *
14226010 AGCCATATAATGGGAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGAG
* * * **
14226035 AGCCATGTAACAGGAGGCTTATCCG
1 AGCCATATAACAGGAAGCTCATGAG
* *
14226060 AGCCTTATAACAGGAAGCTCATAAG
1 AGCCATATAACAGGAAGCTCATGAG
* * *
14226085 AGCCATA-ATCAGAAAGCTCATGTG
1 AGCCATATAACAGGAAGCTCATGAG
* *
14226109 AGCCA-ATAACGGGTAGCTC-TGAAG
1 AGCCATATAACAGGAAGCTCATG-AG
14226133 AGCCAT
1 AGCCAT
14226139 GAATCGGGAA
Statistics
Matches: 78, Mismatches: 23, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
23 3 0.04
24 32 0.41
25 43 0.55
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATGAG
Found at i:14226207 original size:23 final size:23
Alignment explanation
Indices: 14226131--14226209 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 23
14226121 GTAGCTCTGA
*
14226131 AGAGCCATGAATCGGGAAGCTCC-G
1 AGAGCCAT--ATCGAGAAGCTCCAG
* * *
14226155 ATAGCCGTATATCGAGAAGTTCAAG
1 AGAGCC--ATATCGAGAAGCTCCAG
*
14226180 CGAGCCATATCGAGAAGCTCCAG
1 AGAGCCATATCGAGAAGCTCCAG
14226203 AGAGCCA
1 AGAGCCA
14226210 ATTATCATGA
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
23 21 0.49
24 15 0.35
25 5 0.12
26 2 0.05
ACGTcount: A:0.33, C:0.24, G:0.28, T:0.15
Consensus pattern (23 bp):
AGAGCCATATCGAGAAGCTCCAG
Found at i:14228193 original size:30 final size:32
Alignment explanation
Indices: 14228159--14228255 Score: 92
Period size: 32 Copynumber: 3.1 Consensus size: 32
14228149 AATTGATTTA
14228159 TATATAGATA-TT-TATAGCCAAATTGAAATG
1 TATATAGATACTTATATAGCCAAATTGAAATG
* * * *
14228189 TATATATATACTTATATTGCCGAATTGAATTG
1 TATATAGATACTTATATAGCCAAATTGAAATG
* * * *
14228221 TATGT-GTATACTTATATTGCCGAATTGAATTG
1 TATATAG-ATACTTATATAGCCAAATTGAAATG
14228253 TAT
1 TAT
14228256 TTGTATATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
30 9 0.16
31 2 0.03
32 47 0.81
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.42
Consensus pattern (32 bp):
TATATAGATACTTATATAGCCAAATTGAAATG
Found at i:14228215 original size:32 final size:32
Alignment explanation
Indices: 14228179--14228272 Score: 136
Period size: 32 Copynumber: 2.9 Consensus size: 32
14228169 TTTATAGCCA
* *
14228179 AATTGAAATGTATATATATACTTATATTGCCG
1 AATTGAATTGTATATGTATACTTATATTGCCG
*
14228211 AATTGAATTGTATGTGTATACTTATATTGCCG
1 AATTGAATTGTATATGTATACTTATATTGCCG
*
14228243 AATTGAATTGTATTTGTATA-TATATATTGC
1 AATTGAATTGTATATGTATACT-TATATTGC
14228273 TGATTTGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
31 1 0.02
32 56 0.98
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (32 bp):
AATTGAATTGTATATGTATACTTATATTGCCG
Found at i:14228444 original size:41 final size:41
Alignment explanation
Indices: 14228399--14228525 Score: 114
Period size: 41 Copynumber: 3.0 Consensus size: 41
14228389 ATTTTAGAGG
*
14228399 AGTGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCGA-
1 AGTGA-TTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
** * *
14228440 AGTGAGAAAACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 AGT--G-ATTCGTGTAAGACCATGTCTGGGACATTGGCATCG-AT
* * * *
14228485 A-TGATTCGTATAAGACCCTATCTGGGACAATGGCATCGAT
1 AGTGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
14228525 A
1 A
14228526 TATGTTAACA
Statistics
Matches: 68, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
40 3 0.04
41 30 0.44
42 1 0.01
43 30 0.44
44 3 0.04
45 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (41 bp):
AGTGATTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:14233221 original size:11 final size:11
Alignment explanation
Indices: 14233205--14233232 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
14233195 TTCATGTTTG
14233205 GTGGTGTTAAC
1 GTGGTGTTAAC
14233216 GTGGTGTTAAC
1 GTGGTGTTAAC
14233227 GTGGTG
1 GTGGTG
14233233 AACTTGCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.07, G:0.43, T:0.36
Consensus pattern (11 bp):
GTGGTGTTAAC
Found at i:14234291 original size:45 final size:45
Alignment explanation
Indices: 14234226--14234314 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
14234216 AGCCCAACTA
* *
14234226 GCATCTCAAACGGATCGATTTCTATTCTCTTCTTTTTTTAGTTTG
1 GCATCTCAAACGGATCGATTTCTATTCTCCTCTTGTTTTAGTTTG
*
14234271 GCATCTCAAACGGATTGATTTCTATTCTCCTCTTGTTTTAGTTT
1 GCATCTCAAACGGATCGATTTCTATTCTCCTCTTGTTTTAGTTT
14234315 AATTTGTGTG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.48
Consensus pattern (45 bp):
GCATCTCAAACGGATCGATTTCTATTCTCCTCTTGTTTTAGTTTG
Found at i:14241441 original size:13 final size:13
Alignment explanation
Indices: 14241423--14241447 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14241413 ATTATTAATA
14241423 TTATTTTGTGTGT
1 TTATTTTGTGTGT
14241436 TTATTTTGTGTG
1 TTATTTTGTGTG
14241448 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:14242868 original size:2 final size:2
Alignment explanation
Indices: 14242861--14242891 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14242851 TTGGAACATC
14242861 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14242892 GAATAGGTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14243172 original size:41 final size:41
Alignment explanation
Indices: 14243127--14243228 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 41
14243117 GCTTAGAGCT
* *
14243127 TAGCAGGCTTATTGCTGGTGAAACACTTCAGACAAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
* * * *
14243168 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
14243209 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
14243229 TACTGAATCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 3 0.06
41 51 0.94
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
Found at i:14245031 original size:3 final size:3
Alignment explanation
Indices: 14245023--14245060 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
14245013 TCTAAACTAA
14245023 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14245061 ATCATATCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14246109 original size:27 final size:27
Alignment explanation
Indices: 14246075--14246132 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
14246065 CACTATGTTT
*
14246075 TAATTAAAATGTAGGTAACTTACTTTA
1 TAATTAAAATGTAGATAACTTACTTTA
* *
14246102 TAATTAAAATTTAGATAACTTGCTTTA
1 TAATTAAAATGTAGATAACTTACTTTA
14246129 TAAT
1 TAAT
14246133 ATTTCACACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (27 bp):
TAATTAAAATGTAGATAACTTACTTTA
Found at i:14248725 original size:19 final size:17
Alignment explanation
Indices: 14248682--14248714 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14248672 TCTTTTCCTT
14248682 TTCTATTTCTTGTTCTC
1 TTCTATTTCTTGTTCTC
*
14248699 TTCTATTTTTTGTTCT
1 TTCTATTTCTTGTTCT
14248715 TTACTCTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.18, G:0.06, T:0.70
Consensus pattern (17 bp):
TTCTATTTCTTGTTCTC
Found at i:14251496 original size:4 final size:4
Alignment explanation
Indices: 14251487--14251516 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
14251477 CCTTCCCTCT
14251487 CACC CACC CACC CACC CACC CACC CACC CA
1 CACC CACC CACC CACC CACC CACC CACC CA
14251517 AAAAAACAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.73, G:0.00, T:0.00
Consensus pattern (4 bp):
CACC
Found at i:14252047 original size:11 final size:10
Alignment explanation
Indices: 14252021--14252047 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
14252011 AAATATTTAT
14252021 AATTTTTGAA
1 AATTTTTGAA
14252031 AATTTTTGAA
1 AATTTTTGAA
14252041 AATTTTT
1 AATTTTT
14252048 ATATCCTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (10 bp):
AATTTTTGAA
Found at i:14256361 original size:14 final size:15
Alignment explanation
Indices: 14256335--14256363 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14256325 ATTATATTTA
14256335 TTTATTTACATTAAT
1 TTTATTTACATTAAT
14256350 TTTATTTA-ATTAAT
1 TTTATTTACATTAAT
14256364 CAACACTAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTATTTACATTAAT
Found at i:14256777 original size:19 final size:16
Alignment explanation
Indices: 14256736--14256785 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 16
14256726 TAAAAATTTA
14256736 AAAATAATTATAAAAT
1 AAAATAATTATAAAAT
14256752 AAGAATAATTATATTAAAT
1 AA-AATAATTATA--AAAT
14256771 ATAAATAA-TATAAAA
1 A-AAATAATTATAAAA
14256786 AAGTGCAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 5 0.17
17 10 0.33
18 4 0.13
19 10 0.33
20 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (16 bp):
AAAATAATTATAAAAT
Found at i:14258017 original size:16 final size:16
Alignment explanation
Indices: 14257982--14258022 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
14257972 AAAATATAGC
*
14257982 ATTATATCTATTGTGT
1 ATTATATCAATTGTGT
14257998 ATTATATCAATTGATG-
1 ATTATATCAATTG-TGT
14258014 ATTA-ATCAA
1 ATTATATCAA
14258023 AAGTGTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 5 0.22
16 16 0.70
17 2 0.09
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (16 bp):
ATTATATCAATTGTGT
Found at i:14264062 original size:30 final size:31
Alignment explanation
Indices: 14264036--14264094 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
14264026 GTAAATACTC
* **
14264036 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACCAATAGTGTAAATATGA
14264066 AAAATTTGAAGGACCAATAGTGTAAATAT
1 AAAATTTGAAGGACCAATAGTGTAAATAT
14264095 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACCAATAGTGTAAATATGA
Found at i:14266904 original size:36 final size:37
Alignment explanation
Indices: 14266864--14267004 Score: 115
Period size: 37 Copynumber: 3.8 Consensus size: 37
14266854 AGACAAGAGG
* * * *
14266864 GAGATGAGCAGGAGTGATTCCCTGCAAAGCAATG-CA
1 GAGATGAACAGGAATGATTCACTGCAAAGAAATGACA
* * *
14266900 GAGATGAACAAGAATGATTCACTGTAAAGAAATGACG
1 GAGATGAACAGGAATGATTCACTGCAAAGAAATGACA
* * * *
14266937 GAGATGAACAGGATTGATTCTCTACAAAGAATTGAC-
1 GAGATGAACAGGAATGATTCACTGCAAAGAAATGACA
* * * * *
14266973 GAAAATGAACTGTAAAGATTCTCTGCAAAGAA
1 G-AGATGAACAGGAATGATTCACTGCAAAGAA
14267005 GAAACAAAAT
Statistics
Matches: 84, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
36 29 0.35
37 55 0.65
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (37 bp):
GAGATGAACAGGAATGATTCACTGCAAAGAAATGACA
Found at i:14268181 original size:25 final size:24
Alignment explanation
Indices: 14268114--14268182 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 24
14268104 AGTTTTTTTC
* *
14268114 ATAATTTTTTTATTTTTAAAAATT
1 ATAATTTTTTAATTTTTTAAAATT
* *
14268138 ATATATTTTTTACTTTTTTAAATTT
1 ATA-ATTTTTTAATTTTTTAAAATT
14268163 ATAATTTCTTTAATTTTTTA
1 ATAATTT-TTTAATTTTTTA
14268183 TGTTTTTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
24 7 0.18
25 31 0.82
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (24 bp):
ATAATTTTTTAATTTTTTAAAATT
Found at i:14269077 original size:28 final size:30
Alignment explanation
Indices: 14269030--14269091 Score: 76
Period size: 28 Copynumber: 2.1 Consensus size: 30
14269020 TATTCTTTTT
14269030 AAATAATTTTAATGA-TTTTT-AATTTTAA
1 AAATAATTTTAATGATTTTTTGAATTTTAA
* *
14269058 AAATAATTTTTAT-ATTTTTTTGAATTTTCA
1 AAATAATTTTAATGA-TTTTTTGAATTTTAA
14269088 AAAT
1 AAAT
14269092 TTTTAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 1 0.03
28 12 0.41
29 5 0.17
30 11 0.38
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (30 bp):
AAATAATTTTAATGATTTTTTGAATTTTAA
Found at i:14269692 original size:11 final size:11
Alignment explanation
Indices: 14269667--14269760 Score: 64
Period size: 9 Copynumber: 9.4 Consensus size: 11
14269657 ATAAACTAAT
14269667 AAAATATT-T-
1 AAAATATTATA
14269676 AAAATATTATA
1 AAAATATTATA
14269687 AAAATATT-T-
1 AAAATATTATA
* *
14269696 AAAATATTTTT
1 AAAATATTATA
14269707 AAAA-ATTATTA
1 AAAATATTA-TA
*
14269718 AAAATA-TATT
1 AAAATATTATA
*
14269728 AAAAT-TGATA
1 AAAATATTATA
*
14269738 TAAA-ATTAT-
1 AAAATATTATA
14269747 AAAA-ATTATA
1 AAAATATTATA
14269757 AAAA
1 AAAA
14269761 AAAACTTGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
9 24 0.35
10 24 0.35
11 19 0.28
12 1 0.01
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (11 bp):
AAAATATTATA
Found at i:14269732 original size:10 final size:10
Alignment explanation
Indices: 14269636--14269732 Score: 64
Period size: 11 Copynumber: 9.8 Consensus size: 10
14269626 ATTGTTAAAA
14269636 ATTAAAAT-T
1 ATTAAAATAT
14269645 ATTAAAAT-T
1 ATTAAAATAT
*
14269654 GATATAAACTA-
1 -AT-TAAAATAT
14269665 A-TAAAATAT
1 ATTAAAATAT
14269674 -TTAAAATATT
1 ATTAAAATA-T
*
14269684 ATAAAAATAT
1 ATTAAAATAT
14269694 -TTAAAATATT
1 ATTAAAATA-T
*
14269704 TTTAAAA-ATT
1 ATTAAAATA-T
14269714 ATTAAAAATAT
1 ATT-AAAATAT
14269725 ATTAAAAT
1 ATTAAAAT
14269733 TGATATAAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 21
0.73 0.05 0.21
Matches are distributed among these distances:
8 6 0.08
9 23 0.32
10 16 0.22
11 26 0.36
12 1 0.01
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:14269753 original size:9 final size:9
Alignment explanation
Indices: 14269593--14269760 Score: 94
Period size: 10 Copynumber: 17.6 Consensus size: 9
14269583 AGAATCATGA
14269593 AAAAATTTAT
1 AAAAA-TTAT
*
14269603 AAAATATTAA
1 AAAA-ATTAT
14269613 AAAAATT-T
1 AAAAATTAT
*
14269621 ATAAAATTGTT
1 A-AAAATT-AT
14269632 AAAAA-T-T
1 AAAAATTAT
14269639 -AAAATTAT
1 AAAAATTAT
*
14269647 TAAAATTGAT
1 AAAAATT-AT
* *
14269657 ATAAACTAAT
1 A-AAAATTAT
14269667 AAAATATT-T
1 AAAA-ATTAT
14269676 AAAATATTAT
1 AAAA-ATTAT
*
14269686 AAAAATATTT
1 AAAAAT-TAT
*
14269696 AAAATATTTTT
1 AAAA-A-TTAT
14269707 AAAAATTATT
1 AAAAATTA-T
14269717 AAAAATATAT
1 AAAAAT-TAT
*
14269727 TAAAATTGAT
1 AAAAATT-AT
14269737 ATAAAATTAT
1 A-AAAATTAT
14269747 AAAAATTAT
1 AAAAATTAT
14269756 AAAAA
1 AAAAA
14269761 AAAACTTGAA
Statistics
Matches: 129, Mismatches: 11, Indels: 37
0.73 0.06 0.21
Matches are distributed among these distances:
6 4 0.03
7 2 0.02
8 2 0.02
9 46 0.36
10 51 0.40
11 23 0.18
12 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.38
Consensus pattern (9 bp):
AAAAATTAT
Found at i:14270883 original size:86 final size:86
Alignment explanation
Indices: 14270733--14270908 Score: 289
Period size: 86 Copynumber: 2.0 Consensus size: 86
14270723 TTTAGGTTTA
* * * *
14270733 TTTTTTCCATATTGTACTCTCGTTTGTTTACTCATTTAGTGAAAAGTCGATGCCTCTTTTATCCA
1 TTTTCTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAAGTCAATGCCTCATTTATCCA
* *
14270798 TGGTTTTTCTCTGTTTGAGGG
66 TGGTTTTTCCCTCTTTGAGGG
*
14270819 TTTTCTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAATTCAATGCCTCATTTATCCA
1 TTTTCTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAAGTCAATGCCTCATTTATCCA
14270884 TGGTTTTTCCCTCTTTGAGGG
66 TGGTTTTTCCCTCTTTGAGGG
14270905 TTTT
1 TTTT
14270909 TCACGTAAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (86 bp):
TTTTCTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAAGTCAATGCCTCATTTATCCA
TGGTTTTTCCCTCTTTGAGGG
Found at i:14272349 original size:19 final size:19
Alignment explanation
Indices: 14272326--14272372 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
14272316 ATTTTTAAAT
14272326 ATTTTTATAATATTT-ATA
1 ATTTTTATAATATTTCATA
*
14272344 AGTTTTTAT-ATTTTTCATA
1 A-TTTTTATAATATTTCATA
14272363 ATTTTTATAA
1 ATTTTTATAA
14272373 GTTTATATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTTTATAATATTTCATA
Found at i:14272349 original size:28 final size:28
Alignment explanation
Indices: 14272318--14272376 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
14272308 TTTATTACAT
14272318 TTTTAAATATTTTT-ATAATATTTATAAG
1 TTTT-AATATTTTTCATAATATTTATAAG
* *
14272346 TTTTTATATTTTTCATAATTTTTATAAG
1 TTTTAATATTTTTCATAATATTTATAAG
14272374 TTT
1 TTT
14272377 ATATCAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (28 bp):
TTTTAATATTTTTCATAATATTTATAAG
Found at i:14272396 original size:28 final size:26
Alignment explanation
Indices: 14272324--14272396 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 26
14272314 ACATTTTTAA
14272324 ATAT-TTTTATAATA-TTTATAAGTTT
1 ATATATTTT-TAATATTTTATAAGTTT
* *
14272349 TTATATTTTTCATAATTTTTATAAGTTT
1 ATATATTTTTAAT-A-TTTTATAAGTTT
14272377 ATATCAATTTTTAATATTTT
1 ATAT--ATTTTTAATATTTT
14272397 TTAATAGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
25 6 0.16
26 5 0.13
28 18 0.47
29 1 0.03
30 8 0.21
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (26 bp):
ATATATTTTTAATATTTTATAAGTTT
Found at i:14272424 original size:10 final size:10
Alignment explanation
Indices: 14272288--14272453 Score: 79
Period size: 10 Copynumber: 17.5 Consensus size: 10
14272278 AATATATTAA
14272288 TTTTATAATTT
1 TTTTATAA-TT
14272299 TTTGTATAATT
1 TTT-TATAATT
* *
14272310 TATTA-CA-T
1 TTTTATAATT
14272318 TTTTA-AATAT
1 TTTTATAAT-T
14272328 TTTTATAA-T
1 TTTTATAATT
* *
14272337 ATTTATAAGT
1 TTTTATAATT
14272347 TTTTAT-ATT
1 TTTTATAATT
*
14272356 TTTCATAA-T
1 TTTTATAATT
*
14272365 TTTTATAAGT
1 TTTTATAATT
*
14272375 TTATATCAATT
1 TTTTAT-AATT
*
14272386 TTTAAT-A-T
1 TTTTATAATT
*
14272394 TTTT-TAATA
1 TTTTATAATT
* *
14272403 GTTAATAA--
1 TTTTATAATT
14272411 TTTTATAATT
1 TTTTATAATT
14272421 TTTT-T-ATT
1 TTTTATAATT
14272429 TTTTATAATT
1 TTTTATAATT
* * *
14272439 GTTTCTGATT
1 TTTTATAATT
14272449 TTTTA
1 TTTTA
14272454 ATCATTTTTA
Statistics
Matches: 116, Mismatches: 24, Indels: 31
0.68 0.14 0.18
Matches are distributed among these distances:
7 1 0.01
8 24 0.21
9 29 0.25
10 41 0.35
11 16 0.14
12 5 0.04
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (10 bp):
TTTTATAATT
Found at i:14272451 original size:20 final size:18
Alignment explanation
Indices: 14272411--14272453 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
14272401 TAGTTAATAA
*
14272411 TTTTATAATTTTTTTATT
1 TTTTATAATTTTTTGATT
14272429 TTTTATAATTGTTTCTGATT
1 TTTTATAATT-TTT-TGATT
14272449 TTTTA
1 TTTTA
14272454 ATCATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 10 0.45
19 3 0.14
20 9 0.41
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (18 bp):
TTTTATAATTTTTTGATT
Found at i:14274793 original size:31 final size:31
Alignment explanation
Indices: 14274758--14274832 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
14274748 ATTTATTTAA
* *
14274758 ATTTATACAATTGAATCAAAATTAAAATTTC
1 ATTTATACAATTGAACCAAAATCAAAATTTC
* **
14274789 ATTTATACATTTGAACCGCAATCAAAATTTC
1 ATTTATACAATTGAACCAAAATCAAAATTTC
* *
14274820 ATGTATATAATTG
1 ATTTATACAATTG
14274833 CACTAAATCA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.39
Consensus pattern (31 bp):
ATTTATACAATTGAACCAAAATCAAAATTTC
Found at i:14282475 original size:19 final size:19
Alignment explanation
Indices: 14282451--14282489 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14282441 TTGATTTCTT
*
14282451 ATACTTAAATATAATAATA
1 ATACTTAAACATAATAATA
* *
14282470 ATACTTCACCATAATAATA
1 ATACTTAAACATAATAATA
14282489 A
1 A
14282490 ATCTTAGGGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (19 bp):
ATACTTAAACATAATAATA
Found at i:14285185 original size:10 final size:9
Alignment explanation
Indices: 14285157--14285187 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14285147 GTTTTCCTGG
14285157 TTAGGATTT
1 TTAGGATTT
14285166 TTAGGATTT
1 TTAGGATTT
*
14285175 TTAGGGTTT
1 TTAGGATTT
14285184 TTAG
1 TTAG
14285188 AGAAAAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (9 bp):
TTAGGATTT
Found at i:14285554 original size:126 final size:125
Alignment explanation
Indices: 14285305--14285868 Score: 803
Period size: 126 Copynumber: 4.5 Consensus size: 125
14285295 AAATCAAAGT
* * * * * * *
14285305 AGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCTCAT-GTGTACGCGCTTTTGCTACAGTAGG
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGC-CCTCGTGGACGCGCTTTTGCTACAGTAGG
* *
14285369 TCCTAGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTTAAAAAACGCTTCAAGC
65 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTAAAAAAACGCTTCAAGC
* *
14285430 AGGATGCTTTATGAGAAGAATGTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGGT
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGT
* * *
14285495 CTTGGAAGAAATAATTTCGAGTTGACGTTTGTAAGAAAATAGTTAAAAAAACGCTTCAAGC
66 CCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTAAAAAAACGCTTCAAGC
* *
14285556 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGTTTTTGCTACAGTAGGT
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGT
* * * * * *
14285621 CTTGAAAAAATAATTTCGAGTTGCCGTTTCTGAGCAAATAGTATAAAACAACGCTGCAAGC
66 CCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGT-TAAAAAAACGCTTCAAGC
14285682 AGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
1 AGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* * * * * *
14285746 TCCTGGAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAG-TATAAAATCGCTTCTAGC
65 TCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTAAAAAAACGCTTCAAGC
14285806 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCAT-GTGGACGCGCTTTTGCTACAGTAG
1 AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCC-TCGTGGACGCGCTTTTGCTACAGTAG
14285869 CATGTTTGGG
Statistics
Matches: 396, Mismatches: 37, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
123 2 0.01
124 73 0.18
125 90 0.23
126 229 0.58
127 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (125 bp):
AGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGT
CCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTTAAAAAAACGCTTCAAGC
Found at i:14286506 original size:22 final size:22
Alignment explanation
Indices: 14286480--14286552 Score: 78
Period size: 22 Copynumber: 3.2 Consensus size: 22
14286470 TTAGATATGG
14286480 ATTTGAGAGAAATTTAGAAGGA
1 ATTTGAGAGAAATTTAGAAGGA
*
14286502 ATTTGAGAGCAAATTGAG-AGGA
1 ATTTGAGAG-AAATTTAGAAGGA
*
14286524 AATTGAGAGGAAATTTGAGAGAGG-
1 ATTTGAGA-GAAATTT-AGA-AGGA
14286548 ATTTG
1 ATTTG
14286553 TTTGTGAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
22 25 0.60
23 10 0.24
24 4 0.10
25 3 0.07
ACGTcount: A:0.41, C:0.01, G:0.32, T:0.26
Consensus pattern (22 bp):
ATTTGAGAGAAATTTAGAAGGA
Found at i:14286548 original size:14 final size:11
Alignment explanation
Indices: 14286482--14286544 Score: 74
Period size: 11 Copynumber: 5.6 Consensus size: 11
14286472 AGATATGGAT
14286482 TTGAGA-GAAA
1 TTGAGAGGAAA
* *
14286492 TTTAGAAGGAAT
1 TTGAG-AGGAAA
*
14286504 TTGAGAGCAAA
1 TTGAGAGGAAA
14286515 TTGAGAGGAAA
1 TTGAGAGGAAA
14286526 TTGAGAGGAAA
1 TTGAGAGGAAA
14286537 TTTGAGAG
1 -TTGAGAG
14286545 AGGATTTGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
10 4 0.09
11 26 0.59
12 14 0.32
ACGTcount: A:0.43, C:0.02, G:0.32, T:0.24
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:14286760 original size:19 final size:19
Alignment explanation
Indices: 14286733--14286777 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
14286723 ACACAAACCG
*
14286733 TGCTTACGTGGACGTGGTT
1 TGCTGACGTGGACGTGGTT
14286752 TGCTGACGTGGACGTGGTT
1 TGCTGACGTGGACGTGGTT
14286771 TGCTGAC
1 TGCTGAC
14286778 TCGTCCCCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.11, C:0.18, G:0.38, T:0.33
Consensus pattern (19 bp):
TGCTGACGTGGACGTGGTT
Found at i:14287080 original size:11 final size:11
Alignment explanation
Indices: 14287064--14287090 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
14287054 GTTTCCCGGC
14287064 TTCAAAGAGAT
1 TTCAAAGAGAT
14287075 TTCAAAGAGAT
1 TTCAAAGAGAT
14287086 TTCAA
1 TTCAA
14287091 TGAGTTCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (11 bp):
TTCAAAGAGAT
Found at i:14290101 original size:15 final size:15
Alignment explanation
Indices: 14290083--14290112 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14290073 ATCCCGAGAT
14290083 TATTTTTTAAAAATG
1 TATTTTTTAAAAATG
14290098 TATTTTTTAAAAATG
1 TATTTTTTAAAAATG
14290113 GTTCATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (15 bp):
TATTTTTTAAAAATG
Found at i:14292411 original size:21 final size:21
Alignment explanation
Indices: 14292387--14292426 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14292377 GATTTGCTGC
* *
14292387 CTTCAGCTTTAATCTGCTCCT
1 CTTCAGCTTCAATCCGCTCCT
14292408 CTTCAGCTTCAATCCGCTC
1 CTTCAGCTTCAATCCGCTC
14292427 TACTGCAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.38, G:0.10, T:0.38
Consensus pattern (21 bp):
CTTCAGCTTCAATCCGCTCCT
Found at i:14292566 original size:46 final size:46
Alignment explanation
Indices: 14292516--14292622 Score: 151
Period size: 46 Copynumber: 2.3 Consensus size: 46
14292506 ATGCATTCTT
* *
14292516 CTTTAATCTATTGCAACACCAAGGAAACAAGATTCGCTGCCTTCAG
1 CTTTAATCTATTCCAACACCAAGGAAACAAGATTCGCCGCCTTCAG
* ** *
14292562 CTTTAATCTGTTCCAATGCCAGGGAAACAAGATTCGCCGCCTTCAG
1 CTTTAATCTATTCCAACACCAAGGAAACAAGATTCGCCGCCTTCAG
*
14292608 CTTTAATCTGTTCCA
1 CTTTAATCTATTCCA
14292623 CTAAAACTTC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (46 bp):
CTTTAATCTATTCCAACACCAAGGAAACAAGATTCGCCGCCTTCAG
Found at i:14292942 original size:24 final size:24
Alignment explanation
Indices: 14292915--14292995 Score: 126
Period size: 24 Copynumber: 3.4 Consensus size: 24
14292905 CGGATTGTCC
*
14292915 CCACTGTAATCTTTAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
* *
14292939 CCACTGTAATCTTCAAGGCTCGAT
1 CCACTGTAATCTTCAAGGTTCAAT
*
14292963 CCACTTTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAT
14292987 CCACTGTAA
1 CCACTGTAA
14292996 GTTTGGGACA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.33
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAT
Found at i:14293870 original size:14 final size:14
Alignment explanation
Indices: 14293851--14293890 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
14293841 TGGCCTCTCC
14293851 ATTTTTTTTTCTTT
1 ATTTTTTTTTCTTT
*
14293865 ATTTTTTATTTTTTT
1 ATTTTTT-TTTCTTT
14293880 ATTTTTATTTT
1 ATTTTT-TTTT
14293891 TTGGACTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 7 0.30
15 15 0.65
16 1 0.04
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (14 bp):
ATTTTTTTTTCTTT
Found at i:14293875 original size:21 final size:21
Alignment explanation
Indices: 14293851--14293892 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
14293841 TGGCCTCTCC
14293851 ATTTTTTT-TTCTTTATTTTTT
1 ATTTTTTTATT-TTTATTTTTT
14293872 ATTTTTTTATTTTTATTTTTT
1 ATTTTTTTATTTTTATTTTTT
14293893 GGACTCAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.86
Consensus pattern (21 bp):
ATTTTTTTATTTTTATTTTTT
Found at i:14293880 original size:15 final size:15
Alignment explanation
Indices: 14293851--14293892 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
14293841 TGGCCTCTCC
*
14293851 ATTTTTT-TTTCTTT
1 ATTTTTTATTTTTTT
14293865 ATTTTTTATTTTTTT
1 ATTTTTTATTTTTTT
14293880 A-TTTTTATTTTTT
1 ATTTTTTATTTTTT
14293893 GGACTCAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 19 0.73
15 7 0.27
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.86
Consensus pattern (15 bp):
ATTTTTTATTTTTTT
Found at i:14304518 original size:14 final size:14
Alignment explanation
Indices: 14304484--14304520 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
14304474 ATACCCGGTT
*
14304484 CACATAATAGCCTG
1 CACATAGTAGCCTG
14304498 CACATAGTAGCCTG
1 CACATAGTAGCCTG
14304512 CACATAGTA
1 CACATAGTA
14304521 CTACACATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (14 bp):
CACATAGTAGCCTG
Found at i:14304574 original size:51 final size:50
Alignment explanation
Indices: 14304498--14304634 Score: 177
Period size: 50 Copynumber: 2.7 Consensus size: 50
14304488 TAATAGCCTG
*
14304498 CACATAGTAGCCTGCACATAGTACTACACATGTGATCGAAGC-TATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA-CCAAGCAT-TCCGGTA
* * *
14304549 CACATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCAAGCATTCCGGTA
* * * *
14304599 CACGTAGTTGCCTGCAAATATTACTACACATGTGAC
1 CACATAGTAGCCTGCACATAGTACTACACATGTGAC
14304635 TTAGCAACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
50 41 0.54
51 35 0.46
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCAAGCATTCCGGTA
Found at i:14304579 original size:26 final size:26
Alignment explanation
Indices: 14304498--14304579 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
14304488 TAATAGCCTG
14304498 CACATAGTAGCCTGCACATAGTACTA
1 CACATAGTAGCCTGCACATAGTACTA
* * *
14304524 CACAT-GT-G-ATCGAAGC-TA-TCCGGTA
1 CACATAGTAGCCT-GCA-CATAGTAC--TA
14304549 CACATAGTAGCCTGCACATAGTACTA
1 CACATAGTAGCCTGCACATAGTACTA
14304575 CACAT
1 CACAT
14304580 GCGACCTATC
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
23 3 0.07
24 5 0.12
25 10 0.24
26 15 0.37
27 5 0.12
28 3 0.07
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (26 bp):
CACATAGTAGCCTGCACATAGTACTA
Found at i:14306695 original size:16 final size:16
Alignment explanation
Indices: 14306674--14306707 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14306664 TTTTAGGATG
* *
14306674 AAATGCTATGCAGTCA
1 AAATGCCATGCAATCA
14306690 AAATGCCATGCAATCA
1 AAATGCCATGCAATCA
14306706 AA
1 AA
14306708 GCAAAACACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (16 bp):
AAATGCCATGCAATCA
Found at i:14307382 original size:13 final size:13
Alignment explanation
Indices: 14307364--14307388 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14307354 CCTTGAGATT
14307364 AATCATTTTAATA
1 AATCATTTTAATA
14307377 AATCATTTTAAT
1 AATCATTTTAAT
14307389 TTATTAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
AATCATTTTAATA
Found at i:14307791 original size:15 final size:15
Alignment explanation
Indices: 14307773--14307802 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14307763 ATCCCGAGAT
14307773 TATTTTTTAAAAATG
1 TATTTTTTAAAAATG
14307788 TATTTTTTAAAAATG
1 TATTTTTTAAAAATG
14307803 GTTCATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (15 bp):
TATTTTTTAAAAATG
Found at i:14323044 original size:48 final size:48
Alignment explanation
Indices: 14322986--14323097 Score: 188
Period size: 48 Copynumber: 2.3 Consensus size: 48
14322976 ATAAATTTTG
* *
14322986 TTTGTAATATAAATTAAATACATTACAACACTAAAAATTGTAACAAAT
1 TTTGTAATATAAATTAAATACATTACAACACTAAAAATTGGAACAAAC
* *
14323034 TTTGTTATATAAATTAAATACATTACAACATTAAAAATTGGAACAAAC
1 TTTGTAATATAAATTAAATACATTACAACACTAAAAATTGGAACAAAC
14323082 TTTGTAATATAAATTA
1 TTTGTAATATAAATTA
14323098 GGTATATTGG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (48 bp):
TTTGTAATATAAATTAAATACATTACAACACTAAAAATTGGAACAAAC
Found at i:14326907 original size:23 final size:23
Alignment explanation
Indices: 14326877--14326944 Score: 127
Period size: 23 Copynumber: 3.0 Consensus size: 23
14326867 CCACACAAAT
14326877 ATGTAGCCGAAGCTACCACTGAA
1 ATGTAGCCGAAGCTACCACTGAA
14326900 ATGTAGCCGAAGCTACCACTGAA
1 ATGTAGCCGAAGCTACCACTGAA
*
14326923 ATGTAGCTGAAGCTACCACTGA
1 ATGTAGCCGAAGCTACCACTGA
14326945 TCAATAACAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.19
Consensus pattern (23 bp):
ATGTAGCCGAAGCTACCACTGAA
Found at i:14330460 original size:87 final size:87
Alignment explanation
Indices: 14330314--14330479 Score: 271
Period size: 87 Copynumber: 1.9 Consensus size: 87
14330304 AACTTTAGGA
*
14330314 AAGTAAGATTCGCCATTGTGACTTTAATCTTTTTAACTACAATGTCGGGGAAGCATGATTCGCTG
1 AAGTAAGATTCGCCATTGTGACTTTAATCTTTTTAACTACAATGTCGAGGAAGCATGATTCGCTG
14330379 TTGTGGCTTTAATCCACCTGGG
66 TTGTGGCTTTAATCCACCTGGG
** **
14330401 AAGTAAGATTCGCTGTTGT-AGCTTTAATCTTTTTAACTGTAATGTCGAGGAAGCATGATTCGCT
1 AAGTAAGATTCGCCATTGTGA-CTTTAATCTTTTTAACTACAATGTCGAGGAAGCATGATTCGCT
14330465 GTTGTGGCTTTAATC
65 GTTGTGGCTTTAATC
14330480 TATTCCACTG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
86 1 0.01
87 72 0.99
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (87 bp):
AAGTAAGATTCGCCATTGTGACTTTAATCTTTTTAACTACAATGTCGAGGAAGCATGATTCGCTG
TTGTGGCTTTAATCCACCTGGG
Found at i:14330461 original size:50 final size:50
Alignment explanation
Indices: 14330398--14330780 Score: 331
Period size: 50 Copynumber: 7.7 Consensus size: 50
14330388 TAATCCACCT
* *
14330398 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
* * * * ** * *
14330448 AGGAAGCATGATTCGCTGTTGTGGCTTTAATCTATTCCACTGC-ATCGCCT
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAT-GTCG
* *
14330498 GGGAGGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACCGCAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
* * * * * ** * *
14330548 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTAC-ATCGCCTG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAT-GTC-G
* *
14330599 GGG-AGTAAGATTCGCTGTTGTAGTTTTAATCTTTTTAACTGCAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
* * * ** * ** **** *
14330648 GGGAAGCAAGATTCACCGATGGGGCTTTAATCTGTTCCACTGCACCACCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
* **
14330698 GAGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
* * * *
14330748 GGGAAGCAAGATTCACCGATGTGGCTTTAATCT
1 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCT
14330781 GTTCCACTGC
Statistics
Matches: 247, Mismatches: 80, Indels: 12
0.73 0.24 0.04
Matches are distributed among these distances:
49 8 0.03
50 231 0.94
51 8 0.03
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (50 bp):
GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
Found at i:14330571 original size:100 final size:100
Alignment explanation
Indices: 14330395--14330812 Score: 638
Period size: 100 Copynumber: 4.2 Consensus size: 100
14330385 CTTTAATCCA
* * *
14330395 CCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGAGGAAGCATGAT
1 CCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGAT
* * * * *
14330460 TCGCTGTTGTGGCTTTAATCTATTCCACTGCATCG
66 TCACCGATGTGGCTTTAATCTGTTCCACTGCACCG
* * *
14330495 CCTGGGAGGCAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACCGCAATGTCGGGGAAGCAAGAT
1 CCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGAT
* *
14330560 TCACCGATGTGGCTTTAATCTGTTCCACTACATCG
66 TCACCGATGTGGCTTTAATCTGTTCCACTGCACCG
* *
14330595 CCTGGGGAGTAAGATTCGCTGTTGTAGTTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGAT
1 CCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGAT
* *
14330660 TCACCGATGGGGCTTTAATCTGTTCCACTGCACCA
66 TCACCGATGTGGCTTTAATCTGTTCCACTGCACCG
* * *
14330695 CCAGAGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGAT
1 CCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGAT
14330760 TCACCGATGTGGCTTTAATCTGTTCCACTGCACCG
66 TCACCGATGTGGCTTTAATCTGTTCCACTGCACCG
* *
14330795 CCAGGGAAATAAGATTCG
1 CCTGGGAAGTAAGATTCG
14330813 TTGTCTTCAC
Statistics
Matches: 290, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 290 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (100 bp):
CCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGAT
TCACCGATGTGGCTTTAATCTGTTCCACTGCACCG
Found at i:14332161 original size:47 final size:47
Alignment explanation
Indices: 14332093--14332186 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
14332083 TCATTTTTCA
* * *
14332093 TTTTTTGGATTCAAAGTGCCCTTTAAGGGTTTTCACTTTGATCCTTT
1 TTTTTTGGACTCAAAGCGCCCTTTAAGGGTTTTCACCTTGATCCTTT
**
14332140 TTTTTTGGACTCAAAGCGCCCTTTGTGGGTTTTCACCTTGATCCTTT
1 TTTTTTGGACTCAAAGCGCCCTTTAAGGGTTTTCACCTTGATCCTTT
14332187 CTCTTTTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (47 bp):
TTTTTTGGACTCAAAGCGCCCTTTAAGGGTTTTCACCTTGATCCTTT
Found at i:14340998 original size:12 final size:13
Alignment explanation
Indices: 14340974--14341021 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
14340964 TGAGGAAGGA
*
14340974 AATATTTAATAAT
1 AATATATAATAAT
14340987 AATATA-AATAAT
1 AATATATAATAAT
14340999 AACATATATACATAAT
1 -A-ATATATA-ATAAT
14341015 AATATAT
1 AATATAT
14341022 TAAAGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 6 0.20
13 6 0.20
14 11 0.37
15 2 0.07
16 5 0.17
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATATAATAAT
Found at i:14341013 original size:16 final size:16
Alignment explanation
Indices: 14340988--14341025 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14340978 TTTAATAATA
14340988 ATATAAATAATAACAT
1 ATATAAATAATAACAT
* *
14341004 ATATACATAATAATAT
1 ATATAAATAATAACAT
14341020 AT-TAAA
1 ATATAAA
14341026 GTTGAAGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATAAATAATAACAT
Found at i:14341267 original size:16 final size:16
Alignment explanation
Indices: 14341222--14341268 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
14341212 TTAAAATAAT
14341222 ATTATATAATAAAATA
1 ATTATATAATAAAATA
*
14341238 ATGCATATACATAAAA-A
1 AT-TATATA-ATAAAATA
14341255 ATTATATAGATAAA
1 ATTATATA-ATAAA
14341269 TATATGAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (16 bp):
ATTATATAATAAAATA
Found at i:14341302 original size:3 final size:3
Alignment explanation
Indices: 14341285--14341328 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
14341275 AACTAATATA
* * * *
14341285 AAT AAT AAC ACT AAT AAT AAT AGT AAT AAT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14341329 ATTAATATTA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:14347911 original size:16 final size:16
Alignment explanation
Indices: 14347888--14347930 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
14347878 GTGCTGTCAT
*
14347888 TTTTTTAATTTTTA-A
1 TTTTTTAATTTATATA
*
14347903 TTATTTTAATATATATA
1 TT-TTTTAATTTATATA
14347920 TTTTTTAATTT
1 TTTTTTAATTT
14347931 CAATTTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 2 0.09
16 18 0.78
17 3 0.13
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTTTAATTTATATA
Found at i:14348189 original size:3 final size:3
Alignment explanation
Indices: 14348183--14348216 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
14348173 AAAAAAGCTA
14348183 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14348217 CTTGGCCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14350397 original size:23 final size:23
Alignment explanation
Indices: 14350370--14350439 Score: 104
Period size: 23 Copynumber: 3.0 Consensus size: 23
14350360 AAAGAAAGAC
14350370 GAACAATGAAGATTCTCTGCAAT
1 GAACAATGAAGATTCTCTGCAAT
* *
14350393 GAACAGTGAAGATTCTCTACAAT
1 GAACAATGAAGATTCTCTGCAAT
* *
14350416 GAACAATGAAAATTCTTTGCAAT
1 GAACAATGAAGATTCTCTGCAAT
14350439 G
1 G
14350440 CACTTTAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (23 bp):
GAACAATGAAGATTCTCTGCAAT
Found at i:14350475 original size:5 final size:5
Alignment explanation
Indices: 14350465--14350489 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14350455 AAAAATAGAT
14350465 TTTAA TTTAA TTTAA TTTAA TTTAA
1 TTTAA TTTAA TTTAA TTTAA TTTAA
14350490 AATATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTTAA
Done.