Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 55 of 189
Found at i:15686303 original size:14 final size:14
Alignment explanation
Indices: 15686283--15686357 Score: 62
Period size: 14 Copynumber: 5.4 Consensus size: 14
15686273 GTTAATTGAC
*
15686283 GGGTTTAGGGTTTA
1 GGGTTTAAGGTTTA
*
15686297 AGGTTTAAGGTTTA
1 GGGTTTAAGGTTTA
* *
15686311 CGGTTTGAGGTTTA
1 GGGTTTAAGGTTTA
* *
15686325 GGGTTCATA-GTTTG
1 GGGTTTA-AGGTTTA
*
15686339 GGGTTTAAGATTTA
1 GGGTTTAAGGTTTA
*
15686353 CGGTT
1 GGGTT
15686358 AAGACTTATA
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
13 1 0.02
14 45 0.96
15 1 0.02
ACGTcount: A:0.19, C:0.04, G:0.35, T:0.43
Consensus pattern (14 bp):
GGGTTTAAGGTTTA
Found at i:15686309 original size:21 final size:21
Alignment explanation
Indices: 15686284--15686357 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
15686274 TTAATTGACG
*
15686284 GGTTTAGGGTTTAAGGTTTAA
1 GGTTTACGGTTTAAGGTTTAA
* *
15686305 GGTTTACGGTTTGAGGTTTAG
1 GGTTTACGGTTTAAGGTTTAA
* ** **
15686326 GGTTCATAGTTTGGGGTTTAA
1 GGTTTACGGTTTAAGGTTTAA
*
15686347 GATTTACGGTT
1 GGTTTACGGTT
15686358 AAGACTTATA
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.19, C:0.04, G:0.34, T:0.43
Consensus pattern (21 bp):
GGTTTACGGTTTAAGGTTTAA
Found at i:15686501 original size:15 final size:15
Alignment explanation
Indices: 15686481--15686510 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15686471 GATATTTTAG
*
15686481 AATATAAATGTAAAT
1 AATATAAATATAAAT
15686496 AATATAAATATAAAT
1 AATATAAATATAAAT
15686511 TATTATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
AATATAAATATAAAT
Found at i:15686757 original size:21 final size:20
Alignment explanation
Indices: 15686717--15686754 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
15686707 AATATATTGA
*
15686717 TGTATTTATTTTTTAAAATG
1 TGTAATTATTTTTTAAAATG
15686737 TGTAATTATTTTTTAAAA
1 TGTAATTATTTTTTAAAA
15686755 ATGCATTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TGTAATTATTTTTTAAAATG
Found at i:15687297 original size:19 final size:19
Alignment explanation
Indices: 15687275--15687319 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
15687265 CTGTCATCTC
*
15687275 CCCCAAATCCCTAAAATTT
1 CCCCAAATCCCTAAAAGTT
* * *
15687294 CCCCTAATTCCTAATAGTT
1 CCCCAAATCCCTAAAAGTT
15687313 CCCCAAA
1 CCCCAAA
15687320 CCCGACGTAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.38, G:0.02, T:0.27
Consensus pattern (19 bp):
CCCCAAATCCCTAAAAGTT
Found at i:15689350 original size:30 final size:30
Alignment explanation
Indices: 15689316--15689501 Score: 162
Period size: 30 Copynumber: 6.1 Consensus size: 30
15689306 ATTAAGATAA
15689316 AATTTCTAATTACATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
* * * * *
15689346 AATTTCTAATTTC-TAAGTACACATCAATTTCT
1 AATTTCTAATTACATAACT-TATAT-AATAT-T
* * * * * *
15689378 AATTT-TATATAACTTATGC-AATATTAAGATAA
1 AATTTCTA-ATTACATA-ACTTATA-TAATAT-T
*
15689410 AATTTCGAATTACATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
*
15689440 AATTTCTAATAACATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
*
15689470 AATTTCTCATTACATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
15689500 AA
1 AA
15689502 GATAAAATTT
Statistics
Matches: 121, Mismatches: 26, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
29 4 0.03
30 73 0.60
31 12 0.10
32 28 0.23
33 4 0.03
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (30 bp):
AATTTCTAATTACATAACTTATATAATATT
Found at i:15689357 original size:37 final size:37
Alignment explanation
Indices: 15689268--15689366 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
15689258 ATCACACATC
*
15689268 AATTTCTAATTTCATAAAATTAAGATAACTTATATAATATT
1 AATTTCTAATTTC-T--AATT-ACATAACTTATATAATATT
** **
15689309 AAGATAAAATTTCTAATTACATAACTTATATAATATT
1 AATTTCTAATTTCTAATTACATAACTTATATAATATT
*
15689346 AATTTCTAATTTCTAAGTACA
1 AATTTCTAATTTCTAATTACA
15689367 CATCAATTTC
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
37 34 0.71
38 4 0.08
40 1 0.02
41 9 0.19
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.42
Consensus pattern (37 bp):
AATTTCTAATTTCTAATTACATAACTTATATAATATT
Found at i:15689696 original size:16 final size:16
Alignment explanation
Indices: 15689595--15689965 Score: 113
Period size: 16 Copynumber: 23.1 Consensus size: 16
15689585 AATTAATATT
15689595 ATACATAACTTACAT-
1 ATACATAACTTACATA
*
15689610 AT--ATAACTCACATA
1 ATACATAACTTACATA
* *
15689624 ACTTACATAGCTTACATT
1 A--TACATAACTTACATA
* *
15689642 CTACACAACTTACATAA
1 ATACATAACTTACAT-A
15689659 CATACATAA--TACATA
1 -ATACATAACTTACATA
*
15689674 ACTTACATAACTAACATA
1 A--TACATAACTTACATA
*
15689692 ATACATAGCTTACATA
1 ATACATAACTTACATA
*
15689708 ATAC---AC-AAC-T-
1 ATACATAACTTACATA
*
15689718 -TACATAGCTTACATA
1 ATACATAACTTACATA
*
15689733 ATAAATAACTTACATA
1 ATACATAACTTACATA
* * *
15689749 AAATACAACTTACATA
1 ATACATAACTTACATA
* *
15689765 GCTTACATGA--TACATA
1 --ATACATAACTTACATA
* *
15689781 ACTTACGTAGCTTACATA
1 A--TACATAACTTACATA
* *
15689799 GTAAATAACTTACATA
1 ATACATAACTTACATA
* * *
15689815 AAATACAACTTACATA
1 ATACATAACTTACATA
15689831 A-A-A-AAGTCTATGACATA
1 ATACATAA--CT-T-ACATA
*
15689848 GCTTACATAA--TACATA
1 --ATACATAACTTACATA
*
15689864 ACTTACATAGCTTACATA
1 A--TACATAACTTACATA
*
15689882 ATAAATAACTTACATAAA
1 ATACATAACTTACAT--A
15689900 ATACA-AA-TTACATA
1 ATACATAACTTACATA
* *
15689914 GCTTACATAA--TACGTA
1 --ATACATAACTTACATA
*
15689930 ACTTACATAACTTATATA
1 A--TACATAACTTACATA
15689948 ATACATAACTTACATA
1 ATACATAACTTACATA
15689964 AT
1 AT
15689966 TTACTTAATA
Statistics
Matches: 259, Mismatches: 51, Indels: 91
0.65 0.13 0.23
Matches are distributed among these distances:
9 3 0.01
11 1 0.00
12 3 0.01
13 15 0.06
14 5 0.02
15 6 0.02
16 165 0.64
17 10 0.04
18 47 0.18
20 1 0.00
21 1 0.00
22 2 0.01
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.30
Consensus pattern (16 bp):
ATACATAACTTACATA
Found at i:15689697 original size:25 final size:25
Alignment explanation
Indices: 15689514--15689749 Score: 139
Period size: 25 Copynumber: 9.4 Consensus size: 25
15689504 TAAAATTTCG
* *
15689514 TAATACATAACTTAAATAACTTACA
1 TAATACATAACTTACATAACTAACA
* *
15689539 TAATACATAACTTTCATAACTTACA
1 TAATACATAACTTACATAACTAACA
* * * * * *
15689564 TTATTCACAACTTGGCCGATTAATTAATA
1 TAATACATAACTT--AC-A-TAACTAACA
*
15689593 TTATACATAACTTACATATA-TAAC-
1 TAATACATAACTTACATA-ACTAACA
* * *
15689617 T--CACATAACTTACATAGCTTACA
1 TAATACATAACTTACATAACTAACA
** *
15689640 TTCTACACAACTTACATAAC-ATACA
1 TAATACATAACTTACATAACTA-ACA
15689665 TAATACATAACTTACATAACTAACA
1 TAATACATAACTTACATAACTAACA
*
15689690 TAATACATAGCTTACATAA-TACACA
1 TAATACATAACTTACATAACTA-ACA
* *
15689715 -ACTTACATAGCTTACATAA-TAA-A
1 TA-ATACATAACTTACATAACTAACA
15689738 TAACTTACATAA
1 TAA--TACATAA
15689750 AATACAACTT
Statistics
Matches: 168, Mismatches: 27, Indels: 32
0.74 0.12 0.14
Matches are distributed among these distances:
22 17 0.10
23 2 0.01
24 6 0.04
25 120 0.71
26 3 0.02
27 2 0.01
28 1 0.01
29 17 0.10
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.32
Consensus pattern (25 bp):
TAATACATAACTTACATAACTAACA
Found at i:15689704 original size:66 final size:66
Alignment explanation
Indices: 15689612--15689964 Score: 264
Period size: 66 Copynumber: 5.1 Consensus size: 66
15689602 ACTTACATAT
* ** * * *
15689612 ATAACTCACATAACTTACATAGCTTACATTCTACACAACTTACATAACATACATAATACATAACT
1 ATAACTAACATAA--TACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACT
15689677 TAC
64 TAC
15689680 ATAACTAACATAATACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACTTA
1 ATAACTAACATAATACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACTTA
15689745 C
66 C
* * * * * *
15689746 ATAA-AATACA-ACTTACATAGCTTACATGATACATAACTTACGTAGCTTACATAGTAAATAACT
1 ATAACTA-ACATA-ATACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACT
15689809 TAC
64 TAC
* * * * *
15689812 ATAAAATACAACTTACATAAAAAAGTCTATGACATAGCTTACATAATACATAACTTACATAGCTT
1 -----AT--AACTAACATAATACA---TA-G-CTT-----ACATAATACACAACTTACATAGCTT
15689877 ACATAATAAATAACTTAC
49 ACATAATAAATAACTTAC
* ** * * *
15689895 ATAA-AATACA-AATTACATAGCTTACATAATACGTAACTTACATAACTTATATAATACATAACT
1 ATAACTA-ACATAA-TACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACT
15689958 TAC
64 TAC
15689961 ATAA
1 ATAA
15689965 TTTACTTAAT
Statistics
Matches: 232, Mismatches: 30, Indels: 48
0.75 0.10 0.15
Matches are distributed among these distances:
65 2 0.01
66 147 0.63
68 12 0.05
71 4 0.02
72 1 0.00
73 9 0.04
74 1 0.00
75 2 0.01
76 9 0.04
77 1 0.00
78 4 0.02
83 40 0.17
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.30
Consensus pattern (66 bp):
ATAACTAACATAATACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACTTA
C
Found at i:15689755 original size:25 final size:25
Alignment explanation
Indices: 15689702--15689755 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
15689692 ATACATAGCT
* ***
15689702 TACATAATACACAACTTACATAGCT
1 TACATAATAAACAACTTACATAAAA
*
15689727 TACATAATAAATAACTTACATAAAA
1 TACATAATAAACAACTTACATAAAA
15689752 TACA
1 TACA
15689756 ACTTACATAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.52, C:0.19, G:0.02, T:0.28
Consensus pattern (25 bp):
TACATAATAAACAACTTACATAAAA
Found at i:15689769 original size:25 final size:24
Alignment explanation
Indices: 15689741--15689897 Score: 72
Period size: 25 Copynumber: 6.0 Consensus size: 24
15689731 TAATAAATAA
15689741 CTTACATAAAATACAACTTACATAG
1 CTTACATAAAATA-AACTTACATAG
* *
15689766 CTTACATGATACAT-AACTTACGTAG
1 CTTACAT-A-AAATAAACTTACATAG
*
15689791 CTTACATAGTAAAT-AACTTACATAAAATACAA
1 CTTACATA--AAATAAACTTAC-----AT--AG
*
15689823 CTTACATAAAA-AAGTCTATGACATAG
1 CTTACATAAAATAA-ACT-T-ACATAG
15689849 CTTACATAATACAT-AACTTACATAG
1 CTTACATAA-A-ATAAACTTACATAG
15689874 CTTACATAATAA-ATAACTTACATA
1 CTTACATAA-AATA-AACTTACATA
15689898 AAATACAAAT
Statistics
Matches: 105, Mismatches: 8, Indels: 38
0.70 0.05 0.25
Matches are distributed among these distances:
24 2 0.02
25 62 0.59
26 12 0.11
27 6 0.06
28 4 0.04
30 5 0.05
31 2 0.02
32 10 0.10
33 2 0.02
ACGTcount: A:0.46, C:0.18, G:0.06, T:0.30
Consensus pattern (24 bp):
CTTACATAAAATAAACTTACATAG
Found at i:15689783 original size:41 final size:41
Alignment explanation
Indices: 15689652--15689965 Score: 192
Period size: 41 Copynumber: 7.4 Consensus size: 41
15689642 CTACACAACT
* * * *
15689652 TACATAACATACATAATACATAACTTACATAACTAACATAA
1 TACATAACTTACATAATACACAACTTACATAGCTTACATAA
*
15689693 TACATAGCTTACATAATACACAACTTACATAGCTTACATAA
1 TACATAACTTACATAATACACAACTTACATAGCTTACATAA
* * * *
15689734 TAAATAACTTACATAAAATACAACTTACATAGCTTACATGA
1 TACATAACTTACATAATACACAACTTACATAGCTTACATAA
* * * * * *
15689775 TACATAACTTACGTAGCTTACA-TA-GTAAATAACTTACATAA
1 TACATAACTTACATA--ATACACAACTTACATAGCTTACATAA
* * *
15689816 AATACAACTTACATAA-A-A-AAGTCTATGACATAGCTTACATAA
1 TACATAACTTACATAATACACAA--CT-T-ACATAGCTTACATAA
* * * *
15689858 TACATAACTTACATAGCTTACATAA--TAAATAACTTACATAAAA
1 TACATAACTTACATA--ATACACAACTTACATAGCTTACAT--AA
** * *
15689901 TACAAATTACATAGCTTACATAATACGTAACTTACATAACTTATATAA
1 TAC--A-T--A-A-CTTACATAATACACAACTTACATAGCTTACATAA
15689949 TACATAACTTACATAAT
1 TACATAACTTACATAAT
15689966 TTACTTAATA
Statistics
Matches: 211, Mismatches: 39, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
37 2 0.01
38 1 0.00
41 131 0.62
42 28 0.13
43 8 0.04
45 3 0.01
46 3 0.01
47 2 0.01
48 12 0.06
49 1 0.00
50 20 0.09
ACGTcount: A:0.48, C:0.18, G:0.04, T:0.30
Consensus pattern (41 bp):
TACATAACTTACATAATACACAACTTACATAGCTTACATAA
Found at i:15689868 original size:83 final size:83
Alignment explanation
Indices: 15689760--15689913 Score: 272
Period size: 83 Copynumber: 1.9 Consensus size: 83
15689750 AATACAACTT
* * * *
15689760 ACATAGCTTACATGATACATAACTTACGTAGCTTACATAGTAAATAACTTACATAAAATACAACT
1 ACATAGCTTACATAATACATAACTTACATAGCTTACATAATAAATAACTTACATAAAATACAAAT
15689825 TACATAAAAAAGTCTATG
66 TACATAAAAAAGTCTATG
15689843 ACATAGCTTACATAATACATAACTTACATAGCTTACATAATAAATAACTTACATAAAATACAAAT
1 ACATAGCTTACATAATACATAACTTACATAGCTTACATAATAAATAACTTACATAAAATACAAAT
15689908 TACATA
66 TACATA
15689914 GCTTACATAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.48, C:0.17, G:0.06, T:0.29
Consensus pattern (83 bp):
ACATAGCTTACATAATACATAACTTACATAGCTTACATAATAAATAACTTACATAAAATACAAAT
TACATAAAAAAGTCTATG
Found at i:15689904 original size:25 final size:25
Alignment explanation
Indices: 15689851--15689969 Score: 86
Period size: 25 Copynumber: 4.8 Consensus size: 25
15689841 TGACATAGCT
***
15689851 TACATAATACATAACTTACATAGCT
1 TACATAATACATAACTTACATAAAA
*
15689876 TACATAATAAATAACTTACATAAAA
1 TACATAATACATAACTTACATAAAA
*
15689901 TACA-AATTACATAGCTTACAT--AA
1 TACATAA-TACATAACTTACATAAAA
* *
15689924 TACGTAACTTACATAACTT--ATATAA
1 TACATAA--TACATAACTTACATAAAA
*
15689949 TACATAACTTACATAATTTAC
1 TACATAA--TACATAACTTAC
15689970 TTAATACAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
23 7 0.09
24 4 0.05
25 66 0.86
ACGTcount: A:0.48, C:0.17, G:0.03, T:0.33
Consensus pattern (25 bp):
TACATAATACATAACTTACATAAAA
Found at i:15689974 original size:25 final size:25
Alignment explanation
Indices: 15689899--15689977 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
15689889 ACTTACATAA
* *
15689899 AATACA-AA-TTACATAGCTTACAT
1 AATACATAACTTACATAACTTACTT
*
15689922 AATACGTAACTTACATAACTTA-TAT
1 AATACATAACTTACATAACTTACT-T
*
15689947 AATACATAACTTACATAATTTACTT
1 AATACATAACTTACATAACTTACTT
15689972 AATACA
1 AATACA
15689978 GAAATATATA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
23 5 0.11
24 2 0.04
25 39 0.83
26 1 0.02
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (25 bp):
AATACATAACTTACATAACTTACTT
Found at i:15689996 original size:149 final size:147
Alignment explanation
Indices: 15689692--15689964 Score: 438
Period size: 149 Copynumber: 1.8 Consensus size: 147
15689682 AACTAACATA
15689692 ATACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACTTACATAAAATACAA
1 ATACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACTTACATAAAATACAA
* * * * *
15689757 CTTACATAGCTTACATGATACATAACTTACGTAGCTTACATAGTAAATAACTTACATAAAATACA
66 ATTACATAGCTTACATAATACATAACTTACATAACTTACATAATAAATAACTTACATAAAATACA
*
15689822 ACTTACATAAAAAAGTCT
131 AC-TACAGAAAAAAGTCT
*
15689840 ATGACATAGCTTACATAATACATAACTTACATAGCTTACATAATAAATAACTTACATAAAATACA
1 AT-ACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACTTACATAAAATACA
* * *
15689905 AATTACATAGCTTACATAATACGTAACTTACATAACTTATATAATACATAACTTACATAA
65 AATTACATAGCTTACATAATACATAACTTACATAACTTACATAATAAATAACTTACATAA
15689965 TTTACTTAAT
Statistics
Matches: 115, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
148 2 0.02
149 113 0.98
ACGTcount: A:0.48, C:0.18, G:0.05, T:0.30
Consensus pattern (147 bp):
ATACATAGCTTACATAATACACAACTTACATAGCTTACATAATAAATAACTTACATAAAATACAA
ATTACATAGCTTACATAATACATAACTTACATAACTTACATAATAAATAACTTACATAAAATACA
ACTACAGAAAAAAGTCT
Found at i:15695925 original size:43 final size:43
Alignment explanation
Indices: 15695878--15696103 Score: 231
Period size: 43 Copynumber: 5.3 Consensus size: 43
15695868 CGTTTTTGGA
* *
15695878 AAAAGCGCCGATAAAGAACATGACCTTTAGCGGCGCTTGCGGG
1 AAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGCTTGTGGG
* * * * **
15695921 AAAAGCGCCGCTAAA-ATTCAAGATCTATAGCGGCAATTGTGGG
1 AAAAGCGCCGCTAAAGA-ACATGACCTTTAGCGGCGCTTGTGGG
* * * * *
15695964 ATAACCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTGAG
1 AAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGCTTGTGGG
* * *
15696007 ATAAGCGCCGCTAAAGAACATGACCTTTATCGACGCTTGT-GG
1 AAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGCTTGTGGG
* * * *
15696049 AATAAGCGCCGCTAAAGAGCATGACCTTTAGTGACGTTTGTGGG
1 AA-AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGCTTGTGGG
*
15696093 ATAAGCGCCGC
1 AAAAGCGCCGC
15696104 AAAACCTAGC
Statistics
Matches: 149, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
42 3 0.02
43 142 0.95
44 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGCTTGTGGG
Found at i:15696090 original size:129 final size:129
Alignment explanation
Indices: 15695867--15696103 Score: 300
Period size: 129 Copynumber: 1.8 Consensus size: 129
15695857 ATCTATTACT
*
15695867 GCGTTTTTGGAAAAAGCGCCGATAAAGAACATGACCTTTAGCGGCGCTTGCGGGAAAAGCGCCGC
1 GCGTTTTTGGAAAAAGCGCCGATAAAGAACATGACCTTTAGCGACGCTTGCGGGAAAAGCGCCGC
* * *
15695932 TAAAATTCAAGATCTATAGCGGCAATTGTGGGATAACCGCCGCTAAAGAACATGACCTTTAGCG
66 TAAAATGCAAGACCTATAGCGACAATTGTGGGATAACCGCCGCTAAAGAACATGACCTTTAGCG
* * * *
15695996 GCGTTTTT-GAGATAAGCGCCGCTAAAGAACATGACCTTTATCGACGCTTG-TGGAATAAGCGCC
1 GCGTTTTTGGA-AAAAGCGCCGATAAAGAACATGACCTTTAGCGACGCTTGCGGGAA-AAGCGCC
* * * ** *
15696059 GCTAAAGA-GCATGACCTTTAGTGACGTTTGTGGGATAAGCGCCGC
64 GCTAAA-ATGCAAGACCTATAGCGACAATTGTGGGATAACCGCCGC
15696104 AAAACCTAGC
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
128 6 0.07
129 84 0.92
130 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (129 bp):
GCGTTTTTGGAAAAAGCGCCGATAAAGAACATGACCTTTAGCGACGCTTGCGGGAAAAGCGCCGC
TAAAATGCAAGACCTATAGCGACAATTGTGGGATAACCGCCGCTAAAGAACATGACCTTTAGCG
Found at i:15699712 original size:32 final size:32
Alignment explanation
Indices: 15699676--15699740 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
15699666 AGTTGAATTG
15699676 AAGTTAACATTACTTTCTTTATGTACATATAT
1 AAGTTAACATTACTTTCTTTATGTACATATAT
*
15699708 AAGTTAACATTACTTTCTTTATGTAGATATAT
1 AAGTTAACATTACTTTCTTTATGTACATATAT
15699740 A
1 A
15699741 TACATATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (32 bp):
AAGTTAACATTACTTTCTTTATGTACATATAT
Found at i:15701743 original size:708 final size:709
Alignment explanation
Indices: 15699708--15707493 Score: 12508
Period size: 708 Copynumber: 11.0 Consensus size: 709
15699698 GTACATATAT
* *
15699708 AAGTTAACATTACTTTCTTTATGTAGATATATATACATATATATATCTTTATTCCATTTTCTAAT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATAC--ATATATATCTTTATTCCATTTTGTAAT
15699773 TTGAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGAT
64 TTGAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGAT
* * *
15699838 GACTGTCCGCATGCATGCGT-G--TA-AAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAAT
129 GACTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAAT
* *
15699899 TACAAGTGTACAATGTCGAGATGTAAAATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGG
194 TGCAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGG
15699964 ATCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATT
259 ATCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATT
* * * *
15700029 ACTAATCTAATTAGTTCAAGAATTATTACTGCAACCGAATAATAATAATGAAGAAATTGAATTTA
324 ACTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTA
*
15700094 AGTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAAAACTATGCAAATTATCAA
389 AGTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAA
* *
15700159 AGCAATGGTCAATTAATCTATTAATTCCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTC
454 AGCAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTC
* * *
15700224 ACCACTCGTAACTCGGAATCACCTCTTAGTCTCATCCTAACTAGAAATTACCACCTAAGATCTCC
519 ACCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCC
* *
15700289 TCTCGATCTCACCTAGGCATATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAG
584 TCTCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAG
*
15700354 TTATGCATGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
649 TTATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
* * *
15700415 AAGTTGACATTACTTTCTTTATGTAGATTTATATACATATATATCTTTATTCCATTTTGTACTTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* *
15700480 GAATTTTAAATTTTATCTGTTAAGGAAGGATATATATTCTTATTTGATAATAAAGATGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
*
15700545 CTGTCT-CGACGCATGTGTAGAAAAC---AAAATTATAAAATAATTTTAAAGCAAGGTTTTAATT
131 CTGTCTGC-ACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATT
* * * * *
15700606 GCAAGTGTACAATGTCGAGATGTAATATTTATAGTATTACAAGCGAAGATGTAGTATTCCAAAGA
195 GCAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGA
* *
15700671 TCAAGGCCAAGGAATTGCTAAATTAGTAAATGTGATTATTAAGTCAAATATTAATTAAGCAATTA
260 TCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTA
* *
15700736 CTAATCTAATCAATTCGAGAATTATTAGTGCAACCGAATAATATTAATGAAGAAATTAAATTTAA
325 CTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAA
* * *
15700801 GTTATCAACAAAACTAAATAACCTAATAACTTCCCCC-TGCCTTAGAACTATGCAGATTATCGAA
390 GTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAA
*
15700865 GTAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCA
455 GCAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCA
*
15700930 CCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCAAGAAATTACCACCTAAGATCTCCT
520 CCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCT
* *
15700995 CACGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAAGT
585 CTCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGT
*
15701060 TATACACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
650 TATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
*
15701120 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCATTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* *
15701185 GAATTTTAAATTTTATCTCTTAAGGCAAGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
* *
15701250 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGTAAGGTTTTAATTA
131 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
*
15701315 CTAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
196 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
*
15701380 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTACCAAGTCAAATATTAATTAAGCAATTAC
261 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
* * *
15701445 TAATCTAATCAGTTCGAGAATTAATAGTGCAACCGAATAATAATAATCAAGAAATTGAATTTAAG
326 TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAAG
* * *
15701510 TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAAAACTGTGCAAATTACCAAAG
391 TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
* * * * *
15701575 CAATGGTCAAATAATCTATTCATTGCTCACTGAGTTAATAAACATGCATCGAAGGTATCACTCAC
456 CAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
*
15701640 CACTCGTAACTCGGAATCACCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
521 CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
* * * *
15701705 TCGATCTCACTTCGACACATAGATCTC-TTTTAGTCTCACTACTTAACGCGTTCATAATAATGTT
586 TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGTT
* *
15701769 ATGCACGATAAGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAGTAGTTGAATTG
651 ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
*
15701828 AAGTTCACATTACTTTCTTTATGTAGATTTATATACATATATATCTTTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* * * *
15701893 GAATTTTAAATTTTATCTGTTAAGGCGGGATATATATTCTTACTTGATAATAAAGATGTAGATCA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
* * *
15701958 CTGTCTGGACGCATACGTAGAAAAC---AAAATTATAAAATAATTATAAAGCAAGGTTTTAATTG
131 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
* *
15702020 CAAGTGTACAATGTCGAGATGTAATATTTATAGTATTAAAAGGGAACATGGAGTA-T-------T
196 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
* *
15702077 -----CCAAGGAATTGCTAAATTGGTAAATGTGATTCTCAAGTCAAATGTTAATTAAGCAATTAC
261 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
* * ** *
15702137 TAATCTAATCACTTCAAGAATTATTAGTGCAATTGAATAATAATAATGAAGAAATTACATTTAAG
326 TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAAG
* * * *
15702202 TTATCAACAAAACTAAATAACCTTATCACTTCCCCCGTGCCTTAGAACTGTGCAGATTATCAAAG
391 TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
*
15702267 CAATGGTCAATTGATCTATTAATTGCTCTCTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
456 CAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
* * * *
15702332 CACTCGTAACTCGGAGTCTTCTCTTAGTCTCATCCTAGCTATAAATTACCACCTAAGATCTCCTC
521 CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
*
15702397 TCGATCTCACTTAGGCACATAGATCTCTTGTTGGTCTCACTACTTAACGCGTTCATAATAAAGTT
586 TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGTT
*
15702462 ATGCAGGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
651 ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
* *
15702521 ATGTTCACA-TACTTTCTTTATGTAGATATATATACATATATATATTTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* * *
15702585 GAATTTTAAATTTTATCTGTTAAGGTAGGATATATATTCTTATTTGTTAATAAAGCTGTAGTTGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
* * * *
15702650 CTGTCCGAACGCATGCGTAAAAAACAAAAAAATTATAAAATAAATTTAAAGCAAGGTTTTAATTG
131 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
* * *
15702715 CAAGTGTACAATGTCGAGATGTAATGTTTATAGTGTTACAAGGGAACATGGACTATTCTAAGGAT
196 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
15702780 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
261 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
* *
15702845 TAATCTAATCAATTCGGGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAAG
326 TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAAG
* *
15702910 TAATCAACAAAACTAAATAACCTAATAACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
391 TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
* ** *
15702975 TAATGGTCAATTGATCTAAAAATTGCTCACTGAGTTAATAAACATGCATCGAAGATATCACTCAC
456 CAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
* * * * * *
15703040 TACTCATAACTCGGAATCTCCTTTCAGTCTCATCCTAGCAAAAAATTACCACCTCAGATCTCCTC
521 CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
* * * *
15703105 TCGATCTCACTTAAGCACGTAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAATGTT
586 TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGTT
* *
15703170 ATGGACGATAGGATATCCTTTCAGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
651 ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
* *
15703229 AAGTTTACATTACTTTCTTTATGTAGATATATACACATATATATCTTTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
15703294 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
*
15703359 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTTAAAGAAAGGTTTTAATT
131 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAA-TTTTAAAGCAAGGTTTTAATT
* *
15703424 GCAAGTGGACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCTAAGGA
195 GCAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGA
* * * *
15703489 TCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTGTCAAGTCAAATATTAATTCAGTAATTG
260 TCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTA
15703554 CTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAA
325 CTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAA
*
15703619 GTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTTCCTTAGAACTATGCAAATTATCAAA
390 GTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAA
* **
15703684 GCAATGGTCAATTGATCTATTAATTTCTTTCTGAGTTAATAAACATGCTTCGAAGATATCACTCA
455 GCAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCA
* * * * *
15703749 CCACTCGTAACTCGGAGTCTTCTCTTAGTCTCATTCTAGCTATAAATTACCACCTAAGATCTCCT
520 CCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCT
*
15703814 CT-GAATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCATTCATAATAAAG
585 CTCG-ATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAG
*
15703878 TTATGCAGGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
649 TTATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
*
15703939 AAGTTCACATTACTTTCTTTATGTAAATATATATACATATATATCTTTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* * *
15704004 GAATTTTAAATTTTATCTGTTAAGGTAGGATATATATTCTTATTTGTTAATAAAGCTGTAGTTGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
* * * * * *
15704069 TTGTCCG-ATCGCATGCGTAAAAAACCAAAAAATTAAAAAATAAATTTAAAGCAAGGTTTTAATT
131 CTGTCTGCA-CGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATT
* * * *
15704133 GCAAGTGTACAATGTCGAGATGTAATGTCTATAGTGTTACAAGGGAACATGGACTATTCTAAGGA
195 GCAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGA
*
15704198 TCAAGGCCAATGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTA
260 TCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTA
* * *
15704263 CTAATCTAATCAATTCGGGAATTATTAGTGCAACCAAATAATAATAATGAAGAAATTAAATTTAA
325 CTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAA
*
15704328 GTAATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAA
390 GTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAA
* * * **
15704393 GCAATGGTCAATTAATCTATTAATTGCTCACTGAGTTAATAGACATGCTTTGAAGATAAAACTCA
455 GCAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCA
* * *
15704458 CCACTCGTAACTCGGAATCTCCACTCAGTCTTATCCTAGCTAAAAATTACCACCTAAGATCTCCT
520 CCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCT
* *
15704523 CTTGATCTCACTTACGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGT
585 CTCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGT
15704588 TATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
650 TATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
*
15704648 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTG
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
** * **
15704713 GAATTTTAAATTTTATCTGTTTTGGCAGGATATAAATTCTTATTTGATAATAAATATGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
* *
15704778 C--TCTGCACGCATGCGTAGAAAACAAAAAAAATTGTAAAATAATTTTAAAGCAATGTTTTAATT
131 CTGTCTGCACGCATGCGTAGAAAAC-AAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATT
** *
15704841 GCAAGTGTACAATGTCGAGATGTAATATTTATAGCATTACAAGGGAACATGGAGTATTCAAAGGA
195 GCAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGA
* * *
15704906 TCAAGTCGAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATGTTAATTAAGCAATTA
260 TCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTA
* *
15704971 CTAATCTAATCAATTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTACATTTAA
325 CTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAA
* * *
15705036 GTTATCAACAAAACTAAATAACCTAATAACTTCCCCC-TGCCTTAGAACTATGCAGATTATCGAA
390 GTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAA
*
15705100 GTAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCA
455 GCAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCA
* *
15705165 CCACTCGTAACTTGGAATCTCCTCTCAGTCTCATCCTAGCAAGAAATTACCACCTAAGATCTCCT
520 CCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCT
*
15705230 CACGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGT
585 CTCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGT
*
15705295 TATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCATATAGGTGAATAGTTGAATTG
650 TATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
*
15705355 AAGTTCACATTACTTTCTTTATGTAGATATATATACCTATATATCTTTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* **
15705420 GAATTTTAAATTTTATCTCTTAAGGCAGGATATATATTCCAATTTGATAATAAAGCTGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
* *
15705485 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGTAAGGTTTTAATTA
131 CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
15705550 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
196 CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
*
15705615 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTACCAAGTCAAATATTAATTAAGCAATTAC
261 CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
* * *
15705680 TAATCTAATCAGTTCGAGAGTTAATAGTGCAACCGAATAATAATAATGAAGAAATTGAATTTAAG
326 TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAAG
* * * *
15705745 TTATCAACAAAACTAAATAACCTAATCATTTCCCCCTTGCCTTAAAACTGTGCAAATTACCAAAG
391 TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
* * * * * *
15705810 CAATGGTCAAATAATCTATTAATTGCTCACTGGGTTAGTAAACATGCATCGAAGGTATCACTCAC
456 CAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
*
15705875 CACTCGTAACTCGGAATCACCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
521 CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
* * * *
15705940 TCGATCTCACTTCGACACATAGATCTC-TTTTAGTCTCACTACTTAACGCGTTCATAATAATGTT
586 TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGTT
*
15706004 ATGCACGATAAGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
651 ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
*
15706063 AAGTTCACATTACTTTCTTTATGTAGATTTATATACATATATATCTTTATTCCATTTTGTAATTT
1 AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
* *
15706128 GAATTTTAAATTTTATCTATTAAGGCAGGATATATATTCTTATTTGATAATGAAGCTGTAGATGA
66 GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
*
15706193 CTGTCTGCACGCATGCGTAGAAAACAAAAAAAATTATAAAATAATTTTAAAGAAAGGTTTTAATT
131 CTGTCTGCACGCATGCGTAGAAAAC-AAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATT
* * * *
15706258 GCAAGTGTACAATGTCGAGATGTAATAGTTAAAGTGTTACAAGGGAACAAGGAGTATTCTAAGGA
195 GCAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGA
*
15706323 TCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTACCAAGTCAAATATTAATTAAGCAATTA
260 TCAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTA
15706388 CTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAA
325 CTAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAA
** *
15706453 GTTATCAACAAAACTAAATATTCTAATCACTTGCCCCTTGCCTTAG-ACTATGCAAATTATCAAA
390 GTTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAA
* * * * *
15706517 GCAATGGTCAATTAATCTAGTAATTACTCACTGTGTTAATAAACATGCTTCGAAGCTATCACTCA
455 GCAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCA
* * *
15706582 CCACTCGTAACTCGTAATCTTCTCTTAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCT
520 CCACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCT
*
15706647 CTCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGG
585 CTCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGT
* * * *
15706712 CATGTACGCTAGGATATCCTTTCGGTCTCACCTATCTGACATAGGTGAATAGTTGAATTG
650 TATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
15706772 AAGTTCACATTACTTTCTTTTTATTGATATATATAAGTTAACATTACTTTGTTTGTGTAGATATA
1 AAGTTCACATTACTTTC---------------------T----TTA---------TGTAGATATA
15706837 TATACATATATATATCTTTATTCCATTTTGTAATTTGAATTTTAAATTTTATCTGTTAAGGCAGG
32 TATAC--ATATATATCTTTATTCCATTTTGTAATTTGAATTTTAAATTTTATCTGTTAAGGCAGG
* * *
15706902 ATATATATTCTTATTTTATAATAAAGATGTAGATGATTGTCTGCACGCATGCGTAGAAAACAAAA
95 ATATATATTCTTATTTGATAATAAAGCTGTAGATGACTGTCTGCACGCATGCGTAGAAAACAAAA
15706967 AAATTATAAAATAATTTTAAAGCAAGGTTTTAATTGCAAGTGTACAATGTCGAGATGTAATATTT
160 AAATTATAAAATAATTTTAAAGCAAGGTTTTAATTGCAAGTGTACAATGTCGAGATGTAATATTT
* * *
15707032 ATAGTATTACAAGGGAACATTGAGTATTCCAAGGATCATGGCCAAGGAATTGCTAAATTGGTAAA
225 ATAGTGTTACAAGGGAACATGGAGTATTCCAAGGATCAAGGCCAAGGAATTGCTAAATTGGTAAA
*
15707097 TGTGATTATCAAGTCAAATATTAATTAAGCAATTACTAATCTAATCATTTCGAGAATTATTAGTG
290 TGTGATTATCAAGTCAAATATTAATTAAGCAATTACTAATCTAATCAGTTCGAGAATTATTAGTG
* *
15707162 CAACCAAATAATAATAATGAAGAAATTAAATTTAAGTTATCAACAAAACGAAATAACCTAATCAC
355 CAACCGAATAATAATAATGAAGAAATTAAATTTAAGTTATCAACAAAACTAAATAACCTAATCAC
* * *
15707227 TTCCCCCTTGCCTTAGAACTATGCAAATTATTAAAGCAATGGTCAATTGGTCTATTAATTTCTCA
420 TTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAGCAATGGTCAATTGATCTATTAATTGCTCA
* * * *
15707292 CTGAGTGAATAAACATGCTTTGAAGATATCACTCACCACTTGTAACTCGAAATCTCCTCTCAGTC
485 CTGAGTTAATAAACATGCTTCGAAGATATCACTCACCACTCGTAACTCGGAATCTCCTCTCAGTC
15707357 TCATCCTAGCTAGAAATTACCACCTAAGATCTCCTCTCGATCTCACTTAGGCACATAGATCTCTT
550 TCATCCTAGCTAGAAATTACCACCTAAGATCTCCTCTCGATCTCACTTAGGCACATAGATCTCTT
*
15707422 TTTGGTCTCACTACTTAACGCATTCATAATAAAGTTATGCACGATAGGATATCCTTTCGGTCTCA
615 TTTGGTCTCACTACTTAACGCGTTCATAATAAAGTTATGCACGATAGGATATCCTTTCGGTCTCA
*
15707487 CCGATCT
680 CCTATCT
15707494 TGATTTTCCA
Statistics
Matches: 6531, Mismatches: 472, Indels: 114
0.92 0.07 0.02
Matches are distributed among these distances:
692 450 0.07
693 98 0.02
695 86 0.01
696 1 0.00
697 1 0.00
703 1 0.00
704 2 0.00
705 599 0.09
706 254 0.04
707 438 0.07
708 1809 0.28
709 1506 0.23
710 658 0.10
730 1 0.00
734 3 0.00
743 14 0.00
744 265 0.04
745 345 0.05
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (709 bp):
AAGTTCACATTACTTTCTTTATGTAGATATATATACATATATATCTTTATTCCATTTTGTAATTT
GAATTTTAAATTTTATCTGTTAAGGCAGGATATATATTCTTATTTGATAATAAAGCTGTAGATGA
CTGTCTGCACGCATGCGTAGAAAACAAAAAAATTATAAAATAATTTTAAAGCAAGGTTTTAATTG
CAAGTGTACAATGTCGAGATGTAATATTTATAGTGTTACAAGGGAACATGGAGTATTCCAAGGAT
CAAGGCCAAGGAATTGCTAAATTGGTAAATGTGATTATCAAGTCAAATATTAATTAAGCAATTAC
TAATCTAATCAGTTCGAGAATTATTAGTGCAACCGAATAATAATAATGAAGAAATTAAATTTAAG
TTATCAACAAAACTAAATAACCTAATCACTTCCCCCTTGCCTTAGAACTATGCAAATTATCAAAG
CAATGGTCAATTGATCTATTAATTGCTCACTGAGTTAATAAACATGCTTCGAAGATATCACTCAC
CACTCGTAACTCGGAATCTCCTCTCAGTCTCATCCTAGCTAGAAATTACCACCTAAGATCTCCTC
TCGATCTCACTTAGGCACATAGATCTCTTTTTGGTCTCACTACTTAACGCGTTCATAATAAAGTT
ATGCACGATAGGATATCCTTTCGGTCTCACCTATCTCACATAGGTGAATAGTTGAATTG
Found at i:15706816 original size:34 final size:34
Alignment explanation
Indices: 15706772--15706840 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
15706762 AGTTGAATTG
* * *
15706772 AAGTTCACATTACTTTCTTTTTATTGATATATAT
1 AAGTTAACATTACTTTCTTTGTATAGATATATAT
* *
15706806 AAGTTAACATTACTTTGTTTGTGTAGATATATAT
1 AAGTTAACATTACTTTCTTTGTATAGATATATAT
15706840 A
1 A
15706841 CATATATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (34 bp):
AAGTTAACATTACTTTCTTTGTATAGATATATAT
Found at i:15712486 original size:18 final size:17
Alignment explanation
Indices: 15712463--15712514 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 17
15712453 AATGTTAAAA
15712463 AATATTTTTATAAATTTT
1 AATATTTTTA-AAATTTT
*
15712481 AATATTTTTAATATTTT
1 AATATTTTTAAAATTTT
* *
15712498 TA-ATTTTTAAAAATTT
1 AATATTTTTAAAATTTT
15712514 A
1 A
15712515 TTAATTGCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 12 0.41
17 7 0.24
18 10 0.34
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
AATATTTTTAAAATTTT
Found at i:15712489 original size:9 final size:9
Alignment explanation
Indices: 15712463--15712519 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
15712453 AATGTTAAAA
15712463 AATATTTTT
1 AATATTTTT
*
15712472 -ATAAATTTT
1 AAT-ATTTTT
15712481 AATATTTTT
1 AATATTTTT
15712490 AATATTTTT
1 AATATTTTT
*
15712499 AAT-TTTTA
1 AATATTTTT
*
15712507 AAAATTTATT
1 AATATTT-TT
15712517 AAT
1 AAT
15712520 TGCTAATGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
8 8 0.21
9 25 0.66
10 5 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
AATATTTTT
Found at i:15712518 original size:18 final size:17
Alignment explanation
Indices: 15712466--15712520 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
15712456 GTTAAAAAAT
*
15712466 ATTTTTATAAA-TTTTA
1 ATTTTTAAAAATTTTTA
* *
15712482 ATATTTTTAATATTTTTA
1 AT-TTTTAAAAATTTTTA
15712500 ATTTTTAAAAATTTATTA
1 ATTTTTAAAAATTT-TTA
15712518 ATT
1 ATT
15712521 GCTAATGTGG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
16 2 0.06
17 16 0.52
18 13 0.42
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTTTTAAAAATTTTTA
Found at i:15717575 original size:13 final size:12
Alignment explanation
Indices: 15717522--15717579 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 12
15717512 ATATACATGC
15717522 ATAAAAA-ATAT
1 ATAAAAATATAT
* *
15717533 GTATAAAT-TAT
1 ATAAAAATATAT
* *
15717544 ATGAAGATAGTAT
1 ATAAAAATA-TAT
15717557 ATAAAAATATAT
1 ATAAAAATATAT
15717569 ATAAAAA-ATAT
1 ATAAAAATATAT
15717580 TGGTAAAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
11 16 0.44
12 10 0.28
13 10 0.28
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (12 bp):
ATAAAAATATAT
Found at i:15719299 original size:100 final size:100
Alignment explanation
Indices: 15719126--15720134 Score: 1527
Period size: 100 Copynumber: 10.1 Consensus size: 100
15719116 AACTTTTGGA
** * * * * * *
15719126 AAGTAAGATTCGCCATTGTAGCTTCAATATTTTTAACTACAATGTCGGGGAAGCAAGATTTGTCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
* *
15719191 TTGTGGCTTTAATCTATTCCACTGCACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* * *
15719226 AAGTAAGATTC-ATCGTTGTAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCATGATTCGCC
1 AAGTAAGATTCGCT-GTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCC
* *
15719290 ATTGTGGCTTCAATCTGTTCCACTACACCGCCTGGG
65 GTTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* ** * * * *
15719326 AAATAAGATTCATTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAAGTAAGATTTGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
15719391 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* *
15719426 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTACAATGTCGGGGAAGCATGATTCACCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
**
15719491 TTGTGGCTTTAATCTGTTCCACTACACCATCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* *
15719526 AAGGAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCA
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
15719591 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* * * *
15719626 AAGTAAGATTCTCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGAAAGATTCTCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
*
15719691 TTATGGCTTTAATCTGTTCCACTACACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* * *
15719726 AAGTAAGATTCGCTGTTGTAGCTTTAATCATTTTAACTGCAATGTCGGGGAAGCATGATTTGTCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
15719791 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* *
15719826 AAGTAAGCTTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCACCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
*
15719891 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGAG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* *
15719926 AAGTAAGATTCACTGTTGTAGCTTTAATCCTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
*
15719991 TTGTGGCTTTAATCTGTTCCACTACACCGCTTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
* * * * * *
15720026 AAGTAAGATTCGCTGTTATAGCTTTAATCTTTTTAACTGCAATGTTGGGAAAGCAAGATTCACAG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
* * *
15720091 TTGTGGCTTTAATCTATTCCACTGCATCGCCTGGG
66 TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
15720126 -AGATAAGAT
1 AAG-TAAGAT
15720135 CTGTAATTTT
Statistics
Matches: 827, Mismatches: 79, Indels: 6
0.91 0.09 0.01
Matches are distributed among these distances:
99 2 0.00
100 824 1.00
101 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (100 bp):
AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCCG
TTGTGGCTTTAATCTGTTCCACTACACCGCCTGGG
Found at i:15720362 original size:44 final size:44
Alignment explanation
Indices: 15720274--15720483 Score: 224
Period size: 44 Copynumber: 4.8 Consensus size: 44
15720264 ATCTATGATT
* * * * *
15720274 TTCAATCTATTCCACTACT-CCCAGGGAGATAGAATTCACCATC
1 TTCAACCTATTCCACTACTGACCAGGGAAATAGAACTCACAATC
** *
15720317 TTCAACCTATTCCACTGTTGACCAGGGAAATAGGACTCACAATC
1 TTCAACCTATTCCACTACTGACCAGGGAAATAGAACTCACAATC
* * * * * * * *
15720361 TTCAATCTATTCCGCTACTGCCCAAGGAGATATAATTCACCATC
1 TTCAACCTATTCCACTACTGACCAGGGAAATAGAACTCACAATC
*
15720405 TTCAACCTATTCCACTACTGACCAGGGAAATAGGACTCACAATC
1 TTCAACCTATTCCACTACTGACCAGGGAAATAGAACTCACAATC
** * *
15720449 TTCAATATATTCCACTACTGCCCAGGGAGATAGAA
1 TTCAACCTATTCCACTACTGACCAGGGAAATAGAA
15720484 TTGGTACCTT
Statistics
Matches: 133, Mismatches: 33, Indels: 1
0.80 0.20 0.01
Matches are distributed among these distances:
43 16 0.12
44 117 0.88
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (44 bp):
TTCAACCTATTCCACTACTGACCAGGGAAATAGAACTCACAATC
Found at i:15720415 original size:88 final size:88
Alignment explanation
Indices: 15720274--15720485 Score: 363
Period size: 88 Copynumber: 2.4 Consensus size: 88
15720264 ATCTATGATT
**
15720274 TTCAATCTATTCCACTACT-CCCAGGGAGATAGAATTCACCATCTTCAACCTATTCCACTGTTGA
1 TTCAATCTATTCCACTACTGCCCAGGGAGATAGAATTCACCATCTTCAACCTATTCCACTACTGA
15720338 CCAGGGAAATAGGACTCACAATC
66 CCAGGGAAATAGGACTCACAATC
* * *
15720361 TTCAATCTATTCCGCTACTGCCCAAGGAGATATAATTCACCATCTTCAACCTATTCCACTACTGA
1 TTCAATCTATTCCACTACTGCCCAGGGAGATAGAATTCACCATCTTCAACCTATTCCACTACTGA
15720426 CCAGGGAAATAGGACTCACAATC
66 CCAGGGAAATAGGACTCACAATC
*
15720449 TTCAATATATTCCACTACTGCCCAGGGAGATAGAATT
1 TTCAATCTATTCCACTACTGCCCAGGGAGATAGAATT
15720486 GGTACCTTCG
Statistics
Matches: 115, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 18 0.16
88 97 0.84
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (88 bp):
TTCAATCTATTCCACTACTGCCCAGGGAGATAGAATTCACCATCTTCAACCTATTCCACTACTGA
CCAGGGAAATAGGACTCACAATC
Found at i:15721975 original size:47 final size:46
Alignment explanation
Indices: 15721908--15721997 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 46
15721898 TTTATTTTTA
*
15721908 TTTTTTGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCTTT
1 TTTTTTGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCTTT
*
15721954 TTTTTTAGGAATCAAATCGCCCTTTGCGGGTTTTCACCTTGGTC
1 TTTTTT-GGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
15721998 CCTTCTCCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
46 6 0.15
47 35 0.85
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.42
Consensus pattern (46 bp):
TTTTTTGGAATCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCTTT
Found at i:15722949 original size:1 final size:1
Alignment explanation
Indices: 15722891--15722933 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
15722881 TTGATTTTGA
* * * *
15722891 TTTTTTTTCTTTTTTTCTTTTTTGTTTTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
15722934 CATTTTCATT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.05, G:0.05, T:0.91
Consensus pattern (1 bp):
T
Found at i:15723777 original size:25 final size:25
Alignment explanation
Indices: 15723727--15723785 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
15723717 AAGAAAATCC
* *
15723727 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATAAAAGAATAATTACTCA
*
15723752 AAAAGAATAAAAGAAT-ATTGGCTCA
1 AAAAGAATAAAAGAATAATT-ACTCA
15723777 AAAATGAAT
1 AAAA-GAAT
15723786 GCAAAGATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 3 0.10
25 22 0.76
26 4 0.14
ACGTcount: A:0.59, C:0.05, G:0.14, T:0.22
Consensus pattern (25 bp):
AAAAGAATAAAAGAATAATTACTCA
Found at i:15725115 original size:21 final size:21
Alignment explanation
Indices: 15725076--15725115 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
15725066 ATTGCCCTAA
* *
15725076 ATTTCTCTTCAATCCATTTCC
1 ATTTCTCCTCAAACCATTTCC
*
15725097 ATTTCTCCTCAAACTATTT
1 ATTTCTCCTCAAACCATTT
15725116 TGGCAATTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTCTCCTCAAACCATTTCC
Found at i:15727552 original size:43 final size:43
Alignment explanation
Indices: 15727394--15727550 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
15727384 TCTGTGTTTT
* *
15727394 CGTGTAAGACCACATCTGGGACATTGGCATCGA-ATTTTGTTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATA-TTTGATTA
* *
15727437 CGTGTAAGACCATGTTTGGGACATTGGCATCG-TATTTGATT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* * * * * *
15727478 TGTGTTAGACC-CTGTCTGGGATAATGGCATTGATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTA
* *
15727521 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
15727551 TGTACGAGTC
Statistics
Matches: 91, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
41 24 0.26
42 14 0.15
43 52 0.57
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:15727740 original size:16 final size:17
Alignment explanation
Indices: 15727711--15727742 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15727701 TGAATTGATG
15727711 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
15727728 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
15727743 TTGTATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:15736845 original size:26 final size:26
Alignment explanation
Indices: 15736809--15736861 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15736799 CATACTATTC
15736809 TAGGAATGTTACTATTTTTTAGTTTA
1 TAGGAATGTTACTATTTTTTAGTTTA
15736835 TAGGAATGTTACTATTTTTTAGTTTA
1 TAGGAATGTTACTATTTTTTAGTTTA
15736861 T
1 T
15736862 TTAATACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.15, T:0.55
Consensus pattern (26 bp):
TAGGAATGTTACTATTTTTTAGTTTA
Found at i:15738951 original size:27 final size:27
Alignment explanation
Indices: 15738931--15738982 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
15738921 GACTTCTCCG
15738931 CATTTAATGTCTTAGCAGACTACCCTA
1 CATTTAATGTCTTAGCAGACTACCCTA
*
15738958 CATTTAATGTCTTGGCAGACTACCC
1 CATTTAATGTCTTAGCAGACTACCC
15738983 CATGTCTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (27 bp):
CATTTAATGTCTTAGCAGACTACCCTA
Found at i:15739130 original size:68 final size:68
Alignment explanation
Indices: 15739039--15739172 Score: 171
Period size: 68 Copynumber: 2.0 Consensus size: 68
15739029 ATAGTCTTGA
* * * * * *
15739039 TTTATCCTCATGATTAACGTCTTGTCGGATTCTTTATGTCGCCATAG-CTGAGCTATAGTCTTAC
1 TTTATCCCCATGATTAACATCTTGGCAGACTCTCTATGTCGCCATAGTC-GAGCTATAGTCTTAC
15739103 ACAT
65 ACAT
** *
15739107 TTTATCCCCATGATTAACATCTTGGCAGACTCTCTATGTTTCCATAGTCGAGCTATGGTCTTACA
1 TTTATCCCCATGATTAACATCTTGGCAGACTCTCTATGTCGCCATAGTCGAGCTATAGTCTTACA
15739172 C
66 C
15739173 CTTAAATTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 55 0.98
69 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (68 bp):
TTTATCCCCATGATTAACATCTTGGCAGACTCTCTATGTCGCCATAGTCGAGCTATAGTCTTACA
CAT
Found at i:15741028 original size:70 final size:70
Alignment explanation
Indices: 15740949--15741091 Score: 277
Period size: 70 Copynumber: 2.0 Consensus size: 70
15740939 CATCAAAATC
*
15740949 AATCAACCATCAATTTTCATTTATTTGTTAATTTCGTTACTTTGCTTGTTTTATGATTTATTCCT
1 AATCAACCATCAATTTTCATTTATTTGTTAATTTCGTTACTTTGCATGTTTTATGATTTATTCCT
15741014 TTTGT
66 TTTGT
15741019 AATCAACCATCAATTTTCATTTATTTGTTAATTTCGTTACTTTGCATGTTTTATGATTTATTCCT
1 AATCAACCATCAATTTTCATTTATTTGTTAATTTCGTTACTTTGCATGTTTTATGATTTATTCCT
15741084 TTTGT
66 TTTGT
15741089 AAT
1 AAT
15741092 TAGTTCGTAA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.23, C:0.14, G:0.08, T:0.55
Consensus pattern (70 bp):
AATCAACCATCAATTTTCATTTATTTGTTAATTTCGTTACTTTGCATGTTTTATGATTTATTCCT
TTTGT
Found at i:15742648 original size:28 final size:30
Alignment explanation
Indices: 15742583--15742651 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 30
15742573 TCTTTTTAAT
*
15742583 ATATTTATTTAATTATTTTTTAAGTAAATAG
1 ATATTTA-TTAATTATTTATTAAGTAAATAG
*
15742614 ATATTTATTATTTA-TTATTAAGTAAA-AG
1 ATATTTATTAATTATTTATTAAGTAAATAG
15742642 ATATTTATTA
1 ATATTTATTA
15742652 GTTAAATAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 12 0.33
29 11 0.31
30 6 0.17
31 7 0.19
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (30 bp):
ATATTTATTAATTATTTATTAAGTAAATAG
Found at i:15743632 original size:23 final size:23
Alignment explanation
Indices: 15743601--15743699 Score: 112
Period size: 23 Copynumber: 4.4 Consensus size: 23
15743591 AGCTTTTCCG
*
15743601 ATCAAGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
15743624 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
** *
15743647 ATTTGGCACTTTATGTGTTGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* * * *
15743670 TTCAAGCACCTCATGTGTCG--T
1 ATCAGGCACTTTATGTGTCGTAT
15743691 ATCAGGCAC
1 ATCAGGCAC
15743700 CTCGCGTGAA
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
21 8 0.13
23 55 0.87
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.38
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCGTAT
Found at i:15748301 original size:25 final size:26
Alignment explanation
Indices: 15748247--15748314 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 26
15748237 GAGCTATTAA
** * *
15748247 CGGGAAGCTCGCAAGAACCATATAAT
1 CGGGAAGCTCGTGAGAGCCAAATAAT
15748273 -GGGAAGCTCGTGAGAGCCAAAT-AT
1 CGGGAAGCTCGTGAGAGCCAAATAAT
* *
15748297 CGGGATGCTCATGAGAGC
1 CGGGAAGCTCGTGAGAGC
15748315 TAATAACAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
24 2 0.06
25 33 0.94
ACGTcount: A:0.32, C:0.21, G:0.31, T:0.16
Consensus pattern (26 bp):
CGGGAAGCTCGTGAGAGCCAAATAAT
Found at i:15750333 original size:61 final size:61
Alignment explanation
Indices: 15750234--15750379 Score: 229
Period size: 61 Copynumber: 2.4 Consensus size: 61
15750224 AATTAATCTA
* * * *
15750234 ATTAATATTAAATTAATAAATTATTATCTAGATCAATATTAAATTTAATTTAATATCTCAT
1 ATTAATATTAAATTAATAAAATACTATCTACATAAATATTAAATTTAATTTAATATCTCAT
*
15750295 ATTAATAATAAATTAATAAAATACTATCTACATAAATATTAAATTTAATTTAATATCTCAT
1 ATTAATATTAAATTAATAAAATACTATCTACATAAATATTAAATTTAATTTAATATCTCAT
*
15750356 ATTAATATTAAATTCATTAAAATA
1 ATTAATATTAAATT-AATAAAATA
15750380 ATATTATTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
61 69 0.90
62 8 0.10
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.43
Consensus pattern (61 bp):
ATTAATATTAAATTAATAAAATACTATCTACATAAATATTAAATTTAATTTAATATCTCAT
Found at i:15753109 original size:26 final size:25
Alignment explanation
Indices: 15753081--15753188 Score: 110
Period size: 25 Copynumber: 4.2 Consensus size: 25
15753071 ACGAGAGTAA
*
15753081 AATTGTCAAAATTTTACTAGGGGTTA-
1 AATTGTTAAAATTTTACT-GGGG-TAC
** * *
15753107 AATCATTAAAATTTTATCGGGGGTAT
1 AATTGTTAAAATTTTA-CTGGGGTAC
* *
15753133 AATTGGTAAAGTTTTACTGGGGTAC
1 AATTGTTAAAATTTTACTGGGGTAC
*
15753158 AATTGTTAAAATTTTACTCGGGTAC
1 AATTGTTAAAATTTTACTGGGGTAC
15753183 AATTGT
1 AATTGT
15753189 GGTGAGAAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
25 37 0.55
26 29 0.43
27 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (25 bp):
AATTGTTAAAATTTTACTGGGGTAC
Found at i:15753137 original size:52 final size:51
Alignment explanation
Indices: 15753063--15753179 Score: 121
Period size: 52 Copynumber: 2.3 Consensus size: 51
15753053 AATTTTCTTG
* *
15753063 AAATTTTAACGAGAGTAAAATT-GTCAAAATTTTACTAGGGGTTA-AATCATTA
1 AAATTTTATCGGGAGTAAAATTGGT-AAAATTTTACT-GGGG-TACAATCATTA
* * * **
15753115 AAATTTTATCGGGGGTATAATTGGTAAAGTTTTACTGGGGTACAATTGTTA
1 AAATTTTATCGGGAGTAAAATTGGTAAAATTTTACTGGGGTACAATCATTA
15753166 AAATTTTACTCGGG
1 AAATTTTA-TCGGG
15753180 TACAATTGTG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
50 2 0.04
51 18 0.33
52 33 0.60
53 2 0.04
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.37
Consensus pattern (51 bp):
AAATTTTATCGGGAGTAAAATTGGTAAAATTTTACTGGGGTACAATCATTA
Found at i:15758541 original size:16 final size:16
Alignment explanation
Indices: 15758504--15758545 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
15758494 TTAATCATAT
*
15758504 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
15758520 TT-AAATATATTATAA
1 TTAAAATATATTATAA
15758535 TTAAAATATAT
1 TTAAAATATAT
15758546 AATTAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:15758548 original size:13 final size:15
Alignment explanation
Indices: 15758513--15758554 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
15758503 TTTAAACATA
*
15758513 ATTATTATTAAATAT
1 ATTATAATTAAATAT
15758528 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
15758542 A-TATAATTAAATA
1 ATTATAATTAAATA
15758555 AAATTCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 10 0.40
14 4 0.16
15 11 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:15758606 original size:61 final size:61
Alignment explanation
Indices: 15758539--15758846 Score: 253
Period size: 61 Copynumber: 5.1 Consensus size: 61
15758529 TTATAATTAA
15758539 AATATATAATTAAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTAAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
15758600 AATATATGA-TACTATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAATTA-AATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
*
15758659 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTAAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
15758720 AATATATGA-TACTATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAATTA-AATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
* *
15758779 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTAAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
15758840 AATATAT
1 AATATAT
15758847 GATACTATAA
Statistics
Matches: 183, Mismatches: 44, Indels: 40
0.69 0.16 0.15
Matches are distributed among these distances:
58 4 0.02
59 58 0.32
60 52 0.28
61 65 0.36
62 4 0.02
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATTAAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:15758672 original size:14 final size:15
Alignment explanation
Indices: 15758623--15758674 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
15758613 ATAAAATATA
15758623 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
15758638 TATTAAATATATTAT
1 AATTAAATATATTAT
15758653 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
15758666 AATTTAATA
1 AATTAAATA
15758675 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:15758676 original size:59 final size:58
Alignment explanation
Indices: 15758507--15758923 Score: 235
Period size: 59 Copynumber: 7.0 Consensus size: 58
15758497 ATCATATTTA
* * * *
15758507 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTAAATAAAATTCTTAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATGATTTAATAAAA-TATAAAT
* * * * * * *
15758566 AATCA-ATATTCTTATATGAATTTACTCA-AATCATAATATATGATACT-ATAAAATATAAATT
1 AA-CATA-ATTATTAT-TAAATATA-TTATAATTAAAATATATGAT-TTAATAAAATATAAA-T
* * *
15758627 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATGATTTAATAAAA-TATAAAT
* * * * * * *
15758686 AATCA-ATATTCTTATATGAATTTACTCA-AATCATAATATATGATACT-ATAAAATATAAATT
1 AA-CATA-ATTATTAT-TAAATATA-TTATAATTAAAATATATGAT-TTAATAAAATATAAA-T
* * *
15758747 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAAT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATGATTTAATAAAA-TATAAAT
* * * * * * * *
15758806 AA-TTAA-TATTCTTATATGA-ATTTACTCAAATCATAATATATGATACT-ATAAAAGATAATTT
1 AACATAATTATTATTAAAT-ATA-TTA-T--AATTAAAATATATGAT-TTAATAAAATATAA-AT
* * *
15758867 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAA
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATGATTTAATAAAATATAAA
15758924 ATAATTATAA
Statistics
Matches: 264, Mismatches: 63, Indels: 63
0.68 0.16 0.16
Matches are distributed among these distances:
57 10 0.04
58 14 0.05
59 84 0.32
60 54 0.20
61 79 0.30
62 14 0.05
63 9 0.03
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.42
Consensus pattern (58 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATGATTTAATAAAATATAAAT
Found at i:15758792 original size:14 final size:15
Alignment explanation
Indices: 15758743--15758794 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
15758733 ATAAAATATA
15758743 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
15758758 TATTAAATATATTAT
1 AATTAAATATATTAT
15758773 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
15758786 AATTTAATA
1 AATTAAATA
15758795 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:15758930 original size:120 final size:120
Alignment explanation
Indices: 15758507--15758919 Score: 747
Period size: 120 Copynumber: 3.4 Consensus size: 120
15758497 ATCATATTTA
*
15758507 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTAAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
15758572 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
15758627 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
15758692 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
*
15758747 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* *
15758812 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* * *
15758867 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
15758920 TAAAATAATT
Statistics
Matches: 285, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
120 283 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:15759029 original size:88 final size:89
Alignment explanation
Indices: 15758935--15759139 Score: 297
Period size: 88 Copynumber: 2.3 Consensus size: 89
15758925 TAATTATAAC
* * * *
15758935 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAAT-A-
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAG
*
15758998 ATATATAATTTCATAAAATTCTTGA
65 ATATATAATTTCATAAAATTCTTAA
15759023 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAA-
15759088 GATATATAATTTCATAAAATTCTTAA
64 GATATATAATTTCATAAAATTCTTAA
*
15759114 TAATAAAATGTTCTTATATTAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
15759140 CTAAAATCAA
Statistics
Matches: 105, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
88 55 0.52
89 3 0.03
91 29 0.28
92 18 0.17
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (89 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAGA
TATATAATTTCATAAAATTCTTAA
Found at i:15759099 original size:44 final size:43
Alignment explanation
Indices: 15758960--15759099 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 43
15758950 TATGAATTTG
* *
15758960 TATAATTTAAAATAATTATTATTACATATAATTTAATAATATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
* ** * * * *
15759003 TA-ATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAATT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
15759048 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
15759092 TATAATTT
1 TATAATTT
15759100 CATAAAATTC
Statistics
Matches: 71, Mismatches: 17, Indels: 17
0.68 0.16 0.16
Matches are distributed among these distances:
42 4 0.06
43 9 0.13
44 43 0.61
45 11 0.15
46 4 0.06
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:15762233 original size:15 final size:15
Alignment explanation
Indices: 15762213--15762248 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
15762203 GGTATATGTA
15762213 TAATTGACCTAAAAT
1 TAATTGACCTAAAAT
15762228 TAATTGACCTAAAAT
1 TAATTGACCTAAAAT
15762243 TAATTG
1 TAATTG
15762249 TTGGTATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.36
Consensus pattern (15 bp):
TAATTGACCTAAAAT
Found at i:15762521 original size:6 final size:6
Alignment explanation
Indices: 15762510--15762535 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
15762500 TAGTTTGAAC
15762510 ATTTAA ATTTAA ATTTAA ATTTAA AT
1 ATTTAA ATTTAA ATTTAA ATTTAA AT
15762536 ATAATTTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTTAA
Found at i:15765292 original size:12 final size:12
Alignment explanation
Indices: 15765275--15765301 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
15765265 CAGGACGAAA
15765275 CAATTGCTCAAC
1 CAATTGCTCAAC
15765287 CAATTGCTCAAC
1 CAATTGCTCAAC
15765299 CAA
1 CAA
15765302 AATCAGCAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.33, G:0.07, T:0.22
Consensus pattern (12 bp):
CAATTGCTCAAC
Found at i:15772354 original size:15 final size:15
Alignment explanation
Indices: 15772329--15772371 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15772319 ATCTATTTGT
*
15772329 AATATAATTAATAT-
1 AATAAAATTAATATA
*
15772343 AATAACAATTAATGTA
1 AATAA-AATTAATATA
15772359 AATAAAATTAATA
1 AATAAAATTAATA
15772372 CGATAATCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 4 0.17
15 15 0.62
16 5 0.21
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (15 bp):
AATAAAATTAATATA
Found at i:15777958 original size:22 final size:22
Alignment explanation
Indices: 15777930--15777973 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15777920 CGTTGTTTTC
15777930 TCTTTTTTGTATTTGATTCCTT
1 TCTTTTTTGTATTTGATTCCTT
*
15777952 TCTTTTTTTTATTTGATTCCTT
1 TCTTTTTTGTATTTGATTCCTT
15777974 GTAAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (22 bp):
TCTTTTTTGTATTTGATTCCTT
Found at i:15779681 original size:40 final size:40
Alignment explanation
Indices: 15779547--15779680 Score: 137
Period size: 40 Copynumber: 3.4 Consensus size: 40
15779537 AGCGGCATTT
** ** * *
15779547 TTAGCGGCGTTTGGACAAAAAACGCCTCTAAAAATAGAGCA
1 TTAGCGGCGTTTTTACGTAAAACGCCGCTAAAAAT-CAGCA
* *
15779588 TTAGCGGCG-CTTTACGTAAAACGCCGCTAAAGATCAAGCA
1 TTAGCGGCGTTTTTACGTAAAACGCCGCTAAAAATC-AGCA
* * *
15779628 TTAGCGGCATTTTTA-TTAAAGCGCCGCTAAAAATCAGCA
1 TTAGCGGCGTTTTTACGTAAAACGCCGCTAAAAATCAGCA
15779667 TTAGCGGCGTTTTT
1 TTAGCGGCGTTTTT
15779681 TGGAAAAACG
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
39 17 0.22
40 47 0.61
41 13 0.17
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCGGCGTTTTTACGTAAAACGCCGCTAAAAATCAGCA
Found at i:15779801 original size:41 final size:41
Alignment explanation
Indices: 15779738--15779888 Score: 223
Period size: 41 Copynumber: 3.7 Consensus size: 41
15779728 CCTTTCGGGG
*
15779738 CTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* * **
15779779 CTTTAGCTGCGTTTTTGGAAAAGCGCCGCTAATGCTC-GGG
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* **
15779819 CTTTAGCGACGTTTTCCAAAAAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
15779860 CTTTAGCGGCGTTTTTGAAAAAGCGCCGC
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGC
15779889 AAAAACATTT
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 33 0.35
41 61 0.65
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
Found at i:15779872 original size:81 final size:81
Alignment explanation
Indices: 15779735--15779888 Score: 263
Period size: 81 Copynumber: 1.9 Consensus size: 81
15779725 ATACCTTTCG
* * * *
15779735 GGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGCTCAGATCTTTAGCTGCGTTTTTGGAAA
1 GGGCTTTAGCGACGTTTTCAAAAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTGAAAA
15779800 AGCGCCGCTAATGCTC
66 AGCGCCGCTAATGCTC
*
15779816 GGGCTTTAGCGACGTTTTCCAAAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTGAAAA
1 GGGCTTTAGCGACGTTTTCAAAAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTGAAAA
15779881 AGCGCCGC
66 AGCGCCGC
15779889 AAAAACATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (81 bp):
GGGCTTTAGCGACGTTTTCAAAAAAGCGCCGCTAATGCTCAGATCTTTAGCGGCGTTTTTGAAAA
AGCGCCGCTAATGCTC
Found at i:15780322 original size:14 final size:15
Alignment explanation
Indices: 15780293--15780326 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
15780283 TAAGGTTTAT
15780293 AGATTATGGAATTAG
1 AGATTATGGAATTAG
15780308 AGATTATGG-ATTAG
1 AGATTATGGAATTAG
15780322 AGATT
1 AGATT
15780327 CTGATTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.35
Consensus pattern (15 bp):
AGATTATGGAATTAG
Found at i:15781017 original size:17 final size:16
Alignment explanation
Indices: 15780984--15781017 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15780974 ATATTAGATT
*
15780984 TAAAAAAATTAATAAA
1 TAAAAAAATTAACAAA
15781000 TAAAAAAATGTAACAAA
1 TAAAAAAAT-TAACAAA
15781017 T
1 T
15781018 TGATACGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAAAATTAACAAA
Found at i:15785611 original size:43 final size:43
Alignment explanation
Indices: 15785563--15785713 Score: 187
Period size: 43 Copynumber: 3.4 Consensus size: 43
15785553 AGATTATATT
**
15785563 TTTAGCGGCGTTTGTGATAAAGGTGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAGGTGCCGCTAAAGGTCTTGGTC
* * *
15785606 TTTAGCGGTGTTTGTGGGGAAAGCGTTGTCGTTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGT-GGGAAAG-G-TGCCGCTAAAGGTCTTGGTC
* * *
15785652 TTTAGCGGCGTTTGGGGGGAAA-GCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTT-GTGGGAAAGGTGCCGCTAAAGGTCTTGGTC
15785695 TTTAGCGGCGTTTGTGGGA
1 TTTAGCGGCGTTTGTGGGA
15785714 TTCTAAAGTT
Statistics
Matches: 92, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 5 0.05
43 43 0.47
44 6 0.07
45 1 0.01
46 36 0.39
47 1 0.01
ACGTcount: A:0.17, C:0.15, G:0.37, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAGGTGCCGCTAAAGGTCTTGGTC
Found at i:15787939 original size:20 final size:19
Alignment explanation
Indices: 15787911--15787967 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
15787901 CATTGCTATT
*
15787911 AATATATTATATATATTTAA
1 AATAAATTATAT-TATTTAA
*
15787931 AATAAATTATATTATTTGAG
1 AATAAATTATATTATTT-AA
*
15787951 AATAAAATATTATTATT
1 AATAAATTA-TATTATT
15787968 AATTAATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 20 0.62
21 7 0.22
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
AATAAATTATATTATTTAA
Found at i:15789594 original size:31 final size:33
Alignment explanation
Indices: 15789548--15789610 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 33
15789538 ATTTCTACTA
* **
15789548 TATTCTTAGGTTAGAATAGTTTA-CTCCTAATG
1 TATTCTTAGGATAGAATAAATTAGCTCCTAATG
15789580 TATT-TTAGGATAGAATAAATTAGCTCCTAAT
1 TATTCTTAGGATAGAATAAATTAGCTCCTAAT
15789611 TTTTTGAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.41
Consensus pattern (33 bp):
TATTCTTAGGATAGAATAAATTAGCTCCTAATG
Found at i:15803497 original size:2 final size:2
Alignment explanation
Indices: 15803490--15803523 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
15803480 TCATATAATG
*
15803490 CT CT CT CT CT CT CT CT CT CT CT CT CT CT AT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
15803524 ATGAAGAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.03, C:0.47, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:15805174 original size:30 final size:31
Alignment explanation
Indices: 15805140--15805206 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
15805130 TGGCCACTGG
* *
15805140 ACTATTT-GAAAGTTTTATTTAAGTCACTAA
1 ACTATTTAAAAAGTTTTATTCAAGTCACTAA
* **
15805170 ACTATTTAAAAATTTTTATTCCGGTCACTAA
1 ACTATTTAAAAAGTTTTATTCAAGTCACTAA
15805201 ACTATT
1 ACTATT
15805207 GAGTGTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
30 7 0.23
31 24 0.77
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.43
Consensus pattern (31 bp):
ACTATTTAAAAAGTTTTATTCAAGTCACTAA
Found at i:15810888 original size:29 final size:28
Alignment explanation
Indices: 15810828--15810890 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 28
15810818 TTGTCATTAT
* * *
15810828 TATTTTATTTTTCTTTTTTTGTTCTTGC
1 TATTTTATTTTTCTTTTATTATTCTTGA
*
15810856 TATTTTATTATTTCTTTTATTATTTTTGA
1 TATTTTATT-TTTCTTTTATTATTCTTGA
15810885 TATTTT
1 TATTTT
15810891 CATGTTATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.14, C:0.06, G:0.05, T:0.75
Consensus pattern (28 bp):
TATTTTATTTTTCTTTTATTATTCTTGA
Found at i:15814652 original size:19 final size:19
Alignment explanation
Indices: 15814611--15814665 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
15814601 TGCCTCTTTT
* *
15814611 TGCATT-CATTTCATTCATT
1 TGCATTACATTTCA-TAATA
15814630 TGCATTACATTTCATAATA
1 TGCATTACATTTCATAATA
15814649 TGCATTA-ATTTTCATAA
1 TGCATTACA-TTTCATAA
15814666 ACAGTTGCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 1 0.03
19 24 0.75
20 7 0.22
ACGTcount: A:0.31, C:0.16, G:0.05, T:0.47
Consensus pattern (19 bp):
TGCATTACATTTCATAATA
Found at i:15822451 original size:51 final size:51
Alignment explanation
Indices: 15822384--15822666 Score: 195
Period size: 51 Copynumber: 5.8 Consensus size: 51
15822374 CATTCTAGCG
*
15822384 AATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTATAAGTTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTATAAGTTACA
* * * *
15822435 AATCTTATCTCCCTGAAGTTACAGTGGAGCAAATTGAAG--AT--G---CG
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTATAAGTTACA
* * * * *
15822479 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTAAAACTATAAGTTAAA
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTATAAGTTACA
* * * * * *
15822530 AATCTTATCTCCCTGAAGTT---GT--AACGGAGT--AGAT-TGAAGATGCG
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTAT-AAGTTACA
* * * *
15822574 AATCTTATTTCCCTGAAGTT-CTAGTAGAACAGACTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTAC-AGTGGAACAGATTAAAGCTATAAGTTACA
* * * * *
15822625 AATCTTATCCCCCTAAAG-TAGCAGTGGAGCAAATTGAAGCTA
1 AATCTTATCTCCCTGAAGTTA-CAGTGGAACAGATTAAAGCTA
15822667 CTAATCTTAT
Statistics
Matches: 174, Mismatches: 40, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
43 1 0.01
44 58 0.33
46 8 0.05
47 3 0.02
48 3 0.02
49 8 0.05
50 1 0.01
51 91 0.52
52 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (51 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGCTATAAGTTACA
Found at i:15822694 original size:95 final size:95
Alignment explanation
Indices: 15822381--15822703 Score: 400
Period size: 95 Copynumber: 3.4 Consensus size: 95
15822371 AGTCATTCTA
* *
15822381 GCGAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTATAAGTTACAAATCTTATCTC
1 GCGAATCTTATTTCCCTAAAGTTACAGTAGAACAGATTAAAGCTATAAGTTACAAATCTTATCTC
15822446 CCTGAAGTTA-CAGTGGAGCAAATTGAAGAT
66 CCTGAAG-TAGCAGTGGAGCAAATTGAAGAT
* * * *
15822476 GCGAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTAAAACTATAAGTTAAAAATCTTATCTC
1 GCGAATCTTATTTCCCTAAAGTTACAGTAGAACAGATTAAAGCTATAAGTTACAAATCTTATCTC
* * ** * *
15822541 CCTGAAGTTGTAACGGAGTAGATTGAAGAT
66 CCTGAAGTAGCAGTGGAGCAAATTGAAGAT
* * * *
15822571 GCGAATCTTATTTCCCTGAAGTT-CTAGTAGAACAGACTAAAGCTACAAGTTACAAATCTTATCC
1 GCGAATCTTATTTCCCTAAAGTTAC-AGTAGAACAGATTAAAGCTATAAGTTACAAATCTTATCT
* *
15822635 CCCTAAAGTAGCAGTGGAGCAAATTGAAGCT
65 CCCTGAAGTAGCAGTGGAGCAAATTGAAGAT
* * * *
15822666 ACTAATCTTATCTT-CCTAAAGTTATAGTAGAGCAGATT
1 GCGAATCTTAT-TTCCCTAAAGTTACAGTAGAACAGATT
15822704 GTAGCGACAA
Statistics
Matches: 193, Mismatches: 31, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
94 2 0.01
95 189 0.98
96 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (95 bp):
GCGAATCTTATTTCCCTAAAGTTACAGTAGAACAGATTAAAGCTATAAGTTACAAATCTTATCTC
CCTGAAGTAGCAGTGGAGCAAATTGAAGAT
Found at i:15824305 original size:3 final size:3
Alignment explanation
Indices: 15824297--15824323 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
15824287 TTTATTAGTC
15824297 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
15824324 TGTTTTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:15824458 original size:3 final size:3
Alignment explanation
Indices: 15824452--15824486 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
15824442 CTTTATTTTT
*
15824452 TTA TTA TGA TTTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T
15824487 AACATTCCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.93
4 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:15835152 original size:49 final size:49
Alignment explanation
Indices: 15835095--15835204 Score: 202
Period size: 49 Copynumber: 2.2 Consensus size: 49
15835085 CCCGAATAAG
15835095 AAAAGGCAAAACTACGTCGTTTTGATAAATGATTACCTTTTCTAAAGTT
1 AAAAGGCAAAACTACGTCGTTTTGATAAATGATTACCTTTTCTAAAGTT
*
15835144 AAAAGGCAAAACTACGTCGTTTTGATAAATGTTTACCTTTTCTAAAGTT
1 AAAAGGCAAAACTACGTCGTTTTGATAAATGATTACCTTTTCTAAAGTT
*
15835193 AAAAGGAAAAAC
1 AAAAGGCAAAAC
15835205 CATTATACTG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 59 1.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.32
Consensus pattern (49 bp):
AAAAGGCAAAACTACGTCGTTTTGATAAATGATTACCTTTTCTAAAGTT
Found at i:15840278 original size:19 final size:20
Alignment explanation
Indices: 15840255--15840294 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
15840245 GTATCAGTAT
* *
15840255 TTTTTTAAGGTATCGATATA
1 TTTTCTAAGGGATCGATATA
15840275 TTTTCCTAAGGGATCGATAT
1 TTTT-CTAAGGGATCGATAT
15840295 TCCTACTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (20 bp):
TTTTCTAAGGGATCGATATA
Found at i:15841315 original size:107 final size:107
Alignment explanation
Indices: 15841129--15841432 Score: 477
Period size: 107 Copynumber: 2.9 Consensus size: 107
15841119 AAGATGTAAG
* * * *
15841129 AGGATATTTAGCTATTCGGTCCG-ATGAG-AAATTGAAACCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGT-CGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
*
15841192 AAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTAAA
65 GAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTAAA
*
15841235 AGGATATTTGGCTATTTGGTCGAACGAGAAAATCAAAACCCAGCACATTAGGGCACGTTTTCTCG
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
*
15841300 AATTTCCAAATGCAAAACATTGCCTTATTTTAAAATTTTAAA
66 AATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTAAA
* * * *
15841342 AGGATATTTGGTTATTTAGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTCCTCG
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
*
15841407 AATTTCCAAACACAAAACATTGCCTT
66 AATTTCCAAACGCAAAACATTGCCTT
15841433 GAAAAAAAAA
Statistics
Matches: 182, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
105 2 0.01
106 22 0.12
107 158 0.87
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (107 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCG
AATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTAAA
Found at i:15841682 original size:8 final size:8
Alignment explanation
Indices: 15841669--15841740 Score: 68
Period size: 8 Copynumber: 9.6 Consensus size: 8
15841659 AGAATAAATA
15841669 AAAATAAT
1 AAAATAAT
15841677 AAAATAAT
1 AAAATAAT
15841685 AAAAT-AT
1 AAAATAAT
*
15841692 -ATATAAT
1 AAAATAAT
15841699 AAAAT-A-
1 AAAATAAT
15841705 AAAATAAT
1 AAAATAAT
15841713 --AATAAT
1 AAAATAAT
15841719 AGAAA-ACAT
1 A-AAATA-AT
15841728 AAAATAAT
1 AAAATAAT
15841736 AAAAT
1 AAAAT
15841741 CTATGTATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 18
0.73 0.03 0.25
Matches are distributed among these distances:
6 14 0.26
7 6 0.11
8 27 0.51
9 6 0.11
ACGTcount: A:0.72, C:0.01, G:0.01, T:0.25
Consensus pattern (8 bp):
AAAATAAT
Found at i:15841683 original size:14 final size:14
Alignment explanation
Indices: 15841664--15841734 Score: 65
Period size: 14 Copynumber: 5.0 Consensus size: 14
15841654 TAATGAGAAT
*
15841664 AAATAAAAATAAT-A
1 AAATAATAA-AATAA
*
15841678 AAATAATAAAATAT
1 AAATAATAAAATAA
*
15841692 ATATAATAAAATAA
1 AAATAATAAAATAA
15841706 AAATAATAATAATAGA
1 AAATAATAA-AATA-A
*
15841722 AAA-CATAAAATAA
1 AAATAATAAAATAA
15841735 TAAAATCTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
13 4 0.08
14 32 0.67
15 8 0.17
16 4 0.08
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (14 bp):
AAATAATAAAATAA
Found at i:15841687 original size:17 final size:17
Alignment explanation
Indices: 15841665--15841739 Score: 77
Period size: 17 Copynumber: 4.4 Consensus size: 17
15841655 AATGAGAATA
15841665 AATAAAAATAATAAAAT
1 AATAAAAATAATAAAAT
15841682 AATAAAATATATATAATAA-
1 AATAAAA-ATA-ATAA-AAT
15841701 AATAAAAATAAT--AAT
1 AATAAAAATAATAAAAT
*
15841716 AATAGAAAA-CATAAAAT
1 AATA-AAAATAATAAAAT
15841733 AATAAAA
1 AATAAAA
15841740 TCTATGTATA
Statistics
Matches: 50, Mismatches: 1, Indels: 15
0.76 0.02 0.23
Matches are distributed among these distances:
14 2 0.04
15 6 0.12
16 7 0.14
17 16 0.32
18 6 0.12
19 11 0.22
20 2 0.04
ACGTcount: A:0.73, C:0.01, G:0.01, T:0.24
Consensus pattern (17 bp):
AATAAAAATAATAAAAT
Found at i:15841737 original size:3 final size:3
Alignment explanation
Indices: 15841665--15841719 Score: 55
Period size: 3 Copynumber: 19.3 Consensus size: 3
15841655 AATGAGAATA
* *
15841665 AAT AAA AAT AAT AA- AAT AAT AA- AAT -AT ATAT AAT AA- AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
15841707 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
15841720 GAAAACATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
2 8 0.19
3 32 0.74
4 3 0.07
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:15843688 original size:132 final size:132
Alignment explanation
Indices: 15843530--15843951 Score: 666
Period size: 132 Copynumber: 3.2 Consensus size: 132
15843520 TTACTTCCCT
* * *
15843530 ACTACCTTGAGAAGATAAGATTCACCATCTAT-GATCTGTTCCACTACTGCTTAGGGTGATAGAA
1 ACTATCTTGAGAAGATAAGATTCACCATCT-TCGATCTGCTCCACTACTGCTTAGGGTGACAGAA
* * * * *
15843594 TCTACAATCTTCAACCTACCCCAGTACTGCTTAGGGAGATAGGACTAACGGCTTAAATCTGCTTT
65 TCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTC
15843659 TCC
130 TCC
* *
15843662 ACTATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCTACTACTGCTTAGGGTGACAGAAT
1 ACTATCTTGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
*
15843727 CTGCAATCTTCAACCTACTCCACTACTCCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
66 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
*
15843792 CT
131 CC
* *
15843794 ACTATCTTGAGAAGATAAGATTCACTATCTTCGATCTGCTCCATTACTGCTTAGGGTGACAGAAT
1 ACTATCTTGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
* *
15843859 CTGCAGTCTTCAACCTACTCCACTACTGCTTAGGGATATAGGACTAATGGCTTAAATCTGCTTCT
66 CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
15843924 CC
131 CC
* *
15843926 ACTATTTTGGGAAGATAAGATTCACC
1 ACTATCTTGAGAAGATAAGATTCACC
15843952 GTCAGTACAG
Statistics
Matches: 266, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
131 1 0.00
132 265 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
ACTATCTTGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAAT
CTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCT
CC
Found at i:15843753 original size:44 final size:44
Alignment explanation
Indices: 15843704--15843893 Score: 113
Period size: 44 Copynumber: 4.3 Consensus size: 44
15843694 GATCTGCTCT
15843704 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
* * * * * * * *
15843748 ACTACTCCTTAGGGAGATAGGA-CT--AATGGCTTAAATCTGCTTC
1 ACTACTGCTTAGGGTGACAGAATCTGCAAT--CTTCAACCTACTCC
* * * * * * * * *
15843791 TCTACTATCTTGAGAAGAT-A-AGATTC-ACTATCTTCGATCTGCTCC
1 ACTACT-GCTT-AG--GGTGACAGAATCTGCAATCTTCAACCTACTCC
* *
15843836 ATTACTGCTTAGGGTGACAGAATCTGCAGTCTTCAACCTACTCC
1 ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
15843880 ACTACTGCTTAGGG
1 ACTACTGCTTAGGG
15843894 ATATAGGACT
Statistics
Matches: 104, Mismatches: 30, Indels: 24
0.66 0.19 0.15
Matches are distributed among these distances:
41 5 0.05
42 1 0.01
43 24 0.23
44 50 0.48
45 19 0.18
46 2 0.02
47 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (44 bp):
ACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCC
Found at i:15844094 original size:45 final size:46
Alignment explanation
Indices: 15843952--15844162 Score: 195
Period size: 44 Copynumber: 4.7 Consensus size: 46
15843942 AAGATTCACC
**
15843952 GTCAGTACAGGAAGGCAAGATCTGCTATCTTCAG-TCTGCTCCATT
1 GTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGATCTGCTCCGCT
* * * * * **
15843997 GTCAGTACAAGAAGGCAAG-GCTGGTGTCTT-TGATCTGCT-TTCT
1 GTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGATCTGCTCCGCT
*
15844040 -TGCTAGTACAAGAAGGCAAGATCTGCTATCTTCAG-TCTGCTCCGCT
1 GT-C-AGTACAGGAAGGCAAGATCTGCTATCTTCAGATCTGCTCCGCT
* * * *
15844086 GTCAGTACAGGAAGGCAAG-GCTGGTGTCTTC-GATCTGCTTCGCT
1 GTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGATCTGCTCCGCT
* * *
15844130 GACAGTACAGGAAGGCATGATCTGTTATCTTCA
1 GTCAGTACAGGAAGGCAAGATCTGCTATCTTCA
15844163 CCGATCTGTT
Statistics
Matches: 132, Mismatches: 24, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 66 0.50
45 56 0.42
46 4 0.03
47 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (46 bp):
GTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGATCTGCTCCGCT
Found at i:15844106 original size:89 final size:89
Alignment explanation
Indices: 15843954--15844162 Score: 314
Period size: 89 Copynumber: 2.3 Consensus size: 89
15843944 GATTCACCGT
*
15843954 CAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCATTGTCAGTACAAGAAGGCAAGGCT
1 CAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTACAAGAAGGCAAGGCT
* *
15844019 GGTGTCTTTGATCTGCTTTC-TTG-
66 GGTGTCTTCGATCTGC-TTCGCTGA
* * *
15844042 CTAGTACAAGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAGTACAGGAAGGCAAGGC
1 C-AGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTACAAGAAGGCAAGGC
15844107 TGGTGTCTTCGATCTGCTTCGCTGA
65 TGGTGTCTTCGATCTGCTTCGCTGA
* *
15844132 CAGTACAGGAAGGCATGATCTGTTATCTTCA
1 CAGTACAGGAAGGCAAGATCTGCTATCTTCA
15844163 CCGATCTGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
88 4 0.04
89 104 0.95
90 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.29
Consensus pattern (89 bp):
CAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTACAAGAAGGCAAGGCT
GGTGTCTTCGATCTGCTTCGCTGA
Found at i:15844458 original size:24 final size:24
Alignment explanation
Indices: 15844431--15844483 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
15844421 CCAGATTGCC
*
15844431 CCACTATAATCTTTAAGGTTCAAT
1 CCACTATAACCTTTAAGGTTCAAT
**
15844455 CCACCGTAACCTTTAAGGTTCAAT
1 CCACTATAACCTTTAAGGTTCAAT
15844479 CCACT
1 CCACT
15844484 GCACCTTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.32
Consensus pattern (24 bp):
CCACTATAACCTTTAAGGTTCAAT
Found at i:15845463 original size:19 final size:18
Alignment explanation
Indices: 15845436--15845499 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 18
15845426 ATCCAATTCG
*
15845436 TTTTCTTTTCTTCTTCTTC
1 TTTTTTTTTCTT-TTCTTC
15845455 TTTTTTTTTCTTTTTCCTT-
1 TTTTTTTTTC-TTTT-CTTC
15845474 TTTTTTATTT-TTTTCTTCC
1 TTTTTT-TTTCTTTTCTT-C
15845493 TTTTTTT
1 TTTTTTT
15845500 AACAATTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
17 3 0.08
18 5 0.13
19 23 0.59
20 8 0.21
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTTTTTCTTTTCTTC
Found at i:15845465 original size:24 final size:24
Alignment explanation
Indices: 15845436--15845490 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
15845426 ATCCAATTCG
*
15845436 TTTTCTTTTCTTCTTCTTCTT-TTT
1 TTTTCTTTT-TCCTTCTTCTTATTT
* *
15845460 TTTTCTTTTTCCTTTTTTTTATTT
1 TTTTCTTTTTCCTTCTTCTTATTT
15845484 TTTTCTT
1 TTTTCTT
15845491 CCTTTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (24 bp):
TTTTCTTTTTCCTTCTTCTTATTT
Found at i:15845486 original size:17 final size:17
Alignment explanation
Indices: 15845441--15845479 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
15845431 ATTCGTTTTC
* *
15845441 TTTTCTTCTTCTT-CTT
1 TTTTTTTCTTTTTCCTT
15845457 TTTTTTTCTTTTTCCTT
1 TTTTTTTCTTTTTCCTT
15845474 TTTTTT
1 TTTTTT
15845480 ATTTTTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTTCTTTTTCCTT
Found at i:15850618 original size:16 final size:16
Alignment explanation
Indices: 15850597--15850631 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
15850587 TTCCAAAATG
*
15850597 AAATGCCATGTAGTCA
1 AAATGCCATGCAGTCA
15850613 AAATGCCATGCAGTCA
1 AAATGCCATGCAGTCA
15850629 AAA
1 AAA
15850632 CAAAACAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (16 bp):
AAATGCCATGCAGTCA
Found at i:15851882 original size:107 final size:107
Alignment explanation
Indices: 15851555--15851858 Score: 493
Period size: 107 Copynumber: 2.9 Consensus size: 107
15851545 AAAATGTAAG
** * *
15851555 AGGATATTTACCTATTCGGTCAAACGAG-AAACCGAAACCCAGCACATTAGGGCACGTTTTCTCA
1 AGGATATTTGGCTATTTGGTCAAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
* *
15851619 AATTTCCAAACGTAAAACATTACCTTATTTTAAAATTTTAAA
66 AATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTAAA
* * *
15851661 AGGATATTTGGCTATTTTGTCGAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTTA
1 AGGATATTTGGCTATTTGGTCAAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
*
15851726 AATTTCCAAATGCAAAACATTGCCTTATTTTAAAATTTTAAA
66 AATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTAAA
* *
15851768 AGGATATTTGGCTATTTGGTCAAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTCCTCG
1 AGGATATTTGGCTATTTGGTCAAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
15851833 AATTTCCAAACGCAAAACATTGCCTT
66 AATTTCCAAACGCAAAACATTGCCTT
15851859 GAAAAAAAAA
Statistics
Matches: 181, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
106 23 0.13
107 158 0.87
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (107 bp):
AGGATATTTGGCTATTTGGTCAAACGAGAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
AATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTAAA
Found at i:15852108 original size:8 final size:8
Alignment explanation
Indices: 15852095--15852171 Score: 55
Period size: 8 Copynumber: 8.6 Consensus size: 8
15852085 AGAATAAATA
15852095 AAAATAAT
1 AAAATAAT
15852103 AAAATAAT
1 AAAATAAT
15852111 AATAATAATCT
1 AA-AATAA--T
*
15852122 ATAAAAAAT
1 A-AAATAAT
*
15852131 AAAATAAA
1 AAAATAAT
15852139 AAAATAAT
1 AAAATAAT
*
15852147 CATAGAAAACAT
1 -A-A-AATA-AT
15852159 AAAATAAT
1 AAAATAAT
15852167 AAAAT
1 AAAAT
15852172 CTATGTATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
8 29 0.53
9 11 0.20
10 2 0.04
11 10 0.18
12 3 0.05
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.23
Consensus pattern (8 bp):
AAAATAAT
Found at i:15852109 original size:14 final size:13
Alignment explanation
Indices: 15852090--15852171 Score: 65
Period size: 14 Copynumber: 5.9 Consensus size: 13
15852080 TAATGAGAAT
15852090 AAATAAAAATAATA
1 AAATAAAAA-AATA
*
15852104 AAATAATAATAATA
1 AAATAA-AAAAATA
**
15852118 ATCTATAAAAAATA
1 AAATA-AAAAAATA
15852132 AAATAAAAAAATA
1 AAATAAAAAAATA
* *
15852145 ATCATAGAAAACATA
1 A-AATA-AAAAAATA
*
15852160 AAATAATAAAAT
1 AAATAAAAAAAT
15852172 CTATGTATAT
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
13 14 0.26
14 28 0.53
15 11 0.21
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.23
Consensus pattern (13 bp):
AAATAAAAAAATA
Found at i:15852118 original size:36 final size:36
Alignment explanation
Indices: 15852078--15852146 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
15852068 CAACAACAAC
* *
15852078 AATAAT-GAGAATAAATAAAAATAATAAAATAATAAT
1 AATAATCGAGAAAAAAT-AAAATAAAAAAATAATAAT
* *
15852114 AATAATCTATAAAAAATAAAATAAAAAAATAAT
1 AATAATCGAGAAAAAATAAAATAAAAAAATAAT
15852147 CATAGAAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
36 21 0.75
37 7 0.25
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (36 bp):
AATAATCGAGAAAAAATAAAATAAAAAAATAATAAT
Found at i:15852155 original size:28 final size:27
Alignment explanation
Indices: 15852095--15852171 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 27
15852085 AGAATAAATA
* *
15852095 AAAATAATAAAATAATAATAATAATCTAT
1 AAAA-AATAAAATAA-AAAAATAATCTAG
15852124 AAAAAATAAAATAAAAAAATAATCATAG
1 AAAAAATAAAATAAAAAAATAATC-TAG
* *
15852152 AAAACATAAAATAATAAAAT
1 AAAAAATAAAATAAAAAAAT
15852172 CTATGTATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 9 0.21
28 30 0.70
29 4 0.09
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.23
Consensus pattern (27 bp):
AAAAAATAAAATAAAAAAATAATCTAG
Found at i:15852168 original size:36 final size:36
Alignment explanation
Indices: 15852090--15852171 Score: 96
Period size: 36 Copynumber: 2.2 Consensus size: 36
15852080 TAATGAGAAT
* *
15852090 AAATAAAAATAATAAAATAATAATAATAATCTATAAA
1 AAAT-AAAATAAAAAAATAATAATAATAAACTATAAA
*
15852127 AAATAAAATAAAAAAATAATCATAGA-AAAC-ATAAA
1 AAATAAAATAAAAAAATAATAATA-ATAAACTATAAA
15852162 ATAATAAAAT
1 A-AATAAAAT
15852172 CTATGTATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
35 6 0.15
36 29 0.73
37 5 0.12
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.23
Consensus pattern (36 bp):
AAATAAAATAAAAAAATAATAATAATAAACTATAAA
Found at i:15852275 original size:16 final size:16
Alignment explanation
Indices: 15852241--15852278 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
15852231 ATGATAATGC
*
15852241 ATATATATTTTTGTGA
1 ATATATATTTTTGTAA
15852257 ATATATATTTTT-TAA
1 ATATATATTTTTGTAA
15852272 A-ATATAT
1 ATATATAT
15852279 GTATACGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.29
15 3 0.14
16 12 0.57
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (16 bp):
ATATATATTTTTGTAA
Found at i:15856321 original size:24 final size:23
Alignment explanation
Indices: 15856294--15856353 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 23
15856284 TTATTAACAT
15856294 TGTTCGTGAACATATTCAAATATA
1 TGTTCGTGAACATATTCAAATA-A
* * ***
15856318 TGTTCATGAACATGTTCGTTTAA
1 TGTTCGTGAACATATTCAAATAA
15856341 TGTTCGTGAACAT
1 TGTTCGTGAACAT
15856354 GTTCGATTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 13 0.43
24 17 0.57
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (23 bp):
TGTTCGTGAACATATTCAAATAA
Found at i:15856332 original size:12 final size:12
Alignment explanation
Indices: 15856317--15856358 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
15856307 ATTCAAATAT
*
15856317 ATGTTCATGAAC
1 ATGTTCGTGAAC
**
15856329 ATGTTCGTTTA-
1 ATGTTCGTGAAC
15856340 ATGTTCGTGAAC
1 ATGTTCGTGAAC
15856352 ATGTTCG
1 ATGTTCG
15856359 ATTAAGTTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (12 bp):
ATGTTCGTGAAC
Found at i:15856350 original size:23 final size:23
Alignment explanation
Indices: 15856294--15856381 Score: 88
Period size: 23 Copynumber: 3.8 Consensus size: 23
15856284 TTATTAACAT
* * *
15856294 TGTTCGTGAACATATTCAAATATA
1 TGTTCGTGAACATGTTCGATTA-A
* *
15856318 TGTTCATGAACATGTTCGTTTAA
1 TGTTCGTGAACATGTTCGATTAA
15856341 TGTTCGTGAACATGTTCGATTAA
1 TGTTCGTGAACATGTTCGATTAA
**
15856364 -GTTAATTGAACATGTTCG
1 TGTT-CGTGAACATGTTCG
15856382 TGAAAATTAA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
22 3 0.06
23 34 0.63
24 17 0.31
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (23 bp):
TGTTCGTGAACATGTTCGATTAA
Found at i:15856391 original size:23 final size:23
Alignment explanation
Indices: 15856347--15856391 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
15856337 TTAATGTTCG
* *
15856347 TGAACATGTTCGATTAAGTTAAT
1 TGAACATGTTCGATAAAATTAAT
15856370 TGAACATGTTCG-TGAAAATTAA
1 TGAACATGTTCGAT-AAAATTAA
15856392 ACAAACGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 1 0.05
23 18 0.95
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (23 bp):
TGAACATGTTCGATAAAATTAAT
Found at i:15859211 original size:47 final size:47
Alignment explanation
Indices: 15859154--15859248 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
15859144 CATTCACCTA
15859154 TTACTTACTTTTATTGATATTTTTATATTTCAAACCTTTGCGTATTT
1 TTACTTACTTTTATTGATATTTTTATATTTCAAACCTTTGCGTATTT
15859201 TTACTTACTTTTATTGATATTTTTATATTTCAAACCTTTGCGTATTT
1 TTACTTACTTTTATTGATATTTTTATATTTCAAACCTTTGCGTATTT
15859248 T
1 T
15859249 ATTTAGATTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.23, C:0.13, G:0.06, T:0.58
Consensus pattern (47 bp):
TTACTTACTTTTATTGATATTTTTATATTTCAAACCTTTGCGTATTT
Found at i:15860535 original size:24 final size:24
Alignment explanation
Indices: 15860472--15860523 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15860462 TTTCTAGATG
* * *
15860472 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGAATTTATTAGCATAATAT
15860496 ATTTAGAATTTATTAGCATAATAT
1 ATTTAGAATTTATTAGCATAATAT
15860520 ATTT
1 ATTT
15860524 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGAATTTATTAGCATAATAT
Found at i:15864413 original size:18 final size:18
Alignment explanation
Indices: 15864390--15864428 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
15864380 ACCACTGAAG
*
15864390 CTGAGTACATGGTGATTA
1 CTGAGTACATGGCGATTA
15864408 CTGAGTACATGGCGATTA
1 CTGAGTACATGGCGATTA
15864426 CTG
1 CTG
15864429 CTCTTTGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (18 bp):
CTGAGTACATGGCGATTA
Found at i:15864753 original size:24 final size:24
Alignment explanation
Indices: 15864690--15864741 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15864680 TTTCTAGAAG
* * *
15864690 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
15864714 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
15864738 ATTT
1 ATTT
15864742 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:15865380 original size:13 final size:13
Alignment explanation
Indices: 15865345--15865390 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
15865335 GGTAAAATTT
*
15865345 TATACTTAATT-A
1 TATAATTAATTAA
*
15865357 TATATTTAATTAGA
1 TATAATTAATTA-A
15865371 -ATAATTAATTAA
1 TATAATTAATTAA
15865383 TATAATTA
1 TATAATTA
15865391 TTGATTAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 11 0.38
13 17 0.59
14 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (13 bp):
TATAATTAATTAA
Found at i:15865795 original size:8 final size:8
Alignment explanation
Indices: 15865770--15865807 Score: 58
Period size: 8 Copynumber: 4.5 Consensus size: 8
15865760 TATAGAAAAA
15865770 TTATAATTT
1 TTATAA-TT
15865779 TTAATAATT
1 TT-ATAATT
15865788 TTATAATT
1 TTATAATT
15865796 TTATAATT
1 TTATAATT
15865804 TTAT
1 TTAT
15865808 TAAAATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 18 0.64
9 6 0.21
10 4 0.14
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TTATAATT
Found at i:15865801 original size:16 final size:18
Alignment explanation
Indices: 15865770--15865864 Score: 70
Period size: 18 Copynumber: 5.4 Consensus size: 18
15865760 TATAGAAAAA
15865770 TTATAATTTTTAATAATT
1 TTATAATTTTTAATAATT
15865788 TTATAA-TTTT-ATAATT
1 TTATAATTTTTAATAATT
**
15865804 TTATTAAAATTTAATAATT
1 TTA-TAATTTTTAATAATT
* ** * *
15865823 TTCTAAAATTTATTATTT
1 TTATAATTTTTAATAATT
* **
15865841 TTATAGTTTTTTCTAATT
1 TTATAATTTTTAATAATT
15865859 TT-TAAT
1 TTATAAT
15865865 AAAAGTATGG
Statistics
Matches: 62, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
16 9 0.15
17 10 0.16
18 35 0.56
19 8 0.13
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (18 bp):
TTATAATTTTTAATAATT
Found at i:15865814 original size:19 final size:18
Alignment explanation
Indices: 15865778--15865834 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 18
15865768 AATTATAATT
*
15865778 TTTAATAA-TTT-TATAA
1 TTTAATAATTTTCTAAAA
* *
15865794 TTTTATAATTTTATTAAAA
1 TTTAATAATTTT-CTAAAA
15865813 TTTAATAATTTTCTAAAA
1 TTTAATAATTTTCTAAAA
15865831 TTTA
1 TTTA
15865835 TTATTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
16 7 0.21
17 3 0.09
18 9 0.26
19 15 0.44
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATAATTTTCTAAAA
Found at i:15866073 original size:91 final size:90
Alignment explanation
Indices: 15865873--15866085 Score: 243
Period size: 92 Copynumber: 2.4 Consensus size: 90
15865863 ATAAAAGTAT
* * * *
15865873 GGGCTTAATTAC-TTTTTTGAAAAATTTTGAAGGTCTTTTTGATTCATTTTGAAAGTTCTAGTAC
1 GGGCTTAATTACTTTTTTTGAAAAAGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTAC
* *
15865937 CCAATTGAGTGAAAAAAAAAGGCAA
66 CCAATTGAGTAAAAAAAAAAAGCAA
* * * * *
15865962 GAGTTTAATTGCTTTTTTTTGAAGAAGTTTGAGGG-CATTTTTTTATGCATTTTGAAAGTTCAAG
1 GGGCTTAATTAC-TTTTTTTGAAAAAGTTTGAGGGTC--TTTTTGATGCATTTTGAAAGTTCAAG
* * *
15866026 TGCTCAATTGAGTAAAAAAAGAAAAG-AG
63 TACCCAATTGAGTAAAAAAA-AAAAGCAA
15866054 GGGCTTAATTACTTTTTTTGAAAAAGTTTGAG
1 GGGCTTAATTACTTTTTTTGAAAAAGTTTGAG
15866086 AATTTTTAAC
Statistics
Matches: 101, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
89 9 0.09
90 1 0.01
91 37 0.37
92 50 0.50
93 4 0.04
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (90 bp):
GGGCTTAATTACTTTTTTTGAAAAAGTTTGAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTAC
CCAATTGAGTAAAAAAAAAAAGCAA
Found at i:15868969 original size:25 final size:25
Alignment explanation
Indices: 15868941--15868990 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
15868931 ATTACATGAT
*
15868941 TGATGAAAAGTAAACGTTGCCACGG
1 TGATGAAAAGTAAACATTGCCACGG
15868966 TGATGAAAAGTAAACATTGCCACGG
1 TGATGAAAAGTAAACATTGCCACGG
15868991 GTTGTCCGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (25 bp):
TGATGAAAAGTAAACATTGCCACGG
Found at i:15869723 original size:25 final size:25
Alignment explanation
Indices: 15869675--15869728 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
15869665 TATGATGGGC
*
15869675 AAAATCGTCAAAATTTTACCAAGGT
1 AAAATCGTCAAAATTTTACCAAGGG
* *
15869700 AAAATCGTCAAAATTTTGCTAAGGG
1 AAAATCGTCAAAATTTTACCAAGGG
15869725 AAAA
1 AAAA
15869729 ATAAAGCCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (25 bp):
AAAATCGTCAAAATTTTACCAAGGG
Found at i:15875688 original size:29 final size:30
Alignment explanation
Indices: 15875655--15875712 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
15875645 ACGACGTGAC
15875655 AAATTGTTATA-TCAAATATAATT-TATTTT
1 AAATT-TTATATTCAAATATAATTATATTTT
* *
15875684 AAATTTTATATTTACATATAATTATATTT
1 AAATTTTATATTCAAATATAATTATATTT
15875713 ATATATATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.20
29 15 0.60
30 5 0.20
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.53
Consensus pattern (30 bp):
AAATTTTATATTCAAATATAATTATATTTT
Found at i:15875710 original size:16 final size:16
Alignment explanation
Indices: 15875689--15875719 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15875679 ATTTTAAATT
15875689 TTATATTTACATATAA
1 TTATATTTACATATAA
*
15875705 TTATATTTATATATA
1 TTATATTTACATATA
15875720 TCCAAAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATATTTACATATAA
Found at i:15891192 original size:27 final size:28
Alignment explanation
Indices: 15891153--15891210 Score: 109
Period size: 27 Copynumber: 2.1 Consensus size: 28
15891143 GCAAAGTATG
15891153 AAATCTTTTGGTATTGATTTGGTTATAT
1 AAATCTTTTGGTATTGATTTGGTTATAT
15891181 AAAT-TTTTGGTATTGATTTGGTTATAT
1 AAATCTTTTGGTATTGATTTGGTTATAT
15891208 AAA
1 AAA
15891211 ACAATTGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.52
Consensus pattern (28 bp):
AAATCTTTTGGTATTGATTTGGTTATAT
Found at i:15891220 original size:27 final size:27
Alignment explanation
Indices: 15891160--15891217 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
15891150 ATGAAATCTT
***
15891160 TTGGTATTGATTTGGTTATATAAATTT
1 TTGGTATTGATTTGGTTATATAAACAA
15891187 TTGGTATTGATTTGGTTATATAAAACAA
1 TTGGTATTGATTTGGTTATAT-AAACAA
15891215 TTG
1 TTG
15891218 TATAGATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (27 bp):
TTGGTATTGATTTGGTTATATAAACAA
Found at i:15892122 original size:21 final size:19
Alignment explanation
Indices: 15892083--15892123 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
15892073 TTATATATTA
*
15892083 AAAATGAATTGTGACATTG
1 AAAATGAATTGTGAAATTG
15892102 AAAATGAATTATGTGAAATTG
1 AAAATGAA-T-TGTGAAATTG
15892123 A
1 A
15892124 TATGTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 1 0.05
21 10 0.53
ACGTcount: A:0.46, C:0.02, G:0.20, T:0.32
Consensus pattern (19 bp):
AAAATGAATTGTGAAATTG
Found at i:15903815 original size:21 final size:21
Alignment explanation
Indices: 15903769--15903815 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
15903759 CAACTCCACT
*
15903769 TCAATCCTATTATTGATCTAA
1 TCAATCCTATTATTCATCTAA
* *
15903790 ACAATCCTTTTATATCATC-AA
1 TCAATCCTATTAT-TCATCTAA
15903811 TCAAT
1 TCAAT
15903816 ACCAAATACT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.36, C:0.21, G:0.02, T:0.40
Consensus pattern (21 bp):
TCAATCCTATTATTCATCTAA
Found at i:15906039 original size:16 final size:17
Alignment explanation
Indices: 15906018--15906049 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15906008 AAATATGCAA
15906018 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
15906034 TCACATAACTTCATAT
1 TCACATAACTTCATAT
15906050 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Done.