Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 64 of 189
Found at i:17913923 original size:22 final size:23
Alignment explanation
Indices: 17913895--17913947 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 23
17913885 TTCGTGTAAC
17913895 TAAATTGTATAT-TTATATATTT
1 TAAATTGTATATGTTATATATTT
*
17913917 TAAATTG-A-ATGTTATGTATTT
1 TAAATTGTATATGTTATATATTT
*
17913938 GAAA-TGTATA
1 TAAATTGTATA
17913948 AGTGCCATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 4 0.15
21 14 0.54
22 8 0.31
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (23 bp):
TAAATTGTATATGTTATATATTT
Found at i:17914136 original size:25 final size:25
Alignment explanation
Indices: 17914108--17914158 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
17914098 CCCATTATTA
*
17914108 GCTCTCATAAGCATCCCGATATATG
1 GCTCTCACAAGCATCCCGATATATG
* * *
17914133 GCTCTCACGAGCTTCCCGTTATATG
1 GCTCTCACAAGCATCCCGATATATG
17914158 G
1 G
17914159 TTCTTGTGAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (25 bp):
GCTCTCACAAGCATCCCGATATATG
Found at i:17914425 original size:25 final size:25
Alignment explanation
Indices: 17914371--17914429 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
17914361 ATTGGCTCGT
17914371 ATGAGCTTCCCGTTAATGGATATCC
1 ATGAGCTTCCCGTTAATGGATATCC
*
17914396 -GGAGCTTCCCGTTACATGG-T-TCAC
1 ATGAGCTTCCCGTTA-ATGGATATC-C
17914420 ATGAGCTTCC
1 ATGAGCTTCC
17914430 TGTTTATGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 2 0.07
24 15 0.52
25 12 0.41
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCCGTTAATGGATATCC
Found at i:17918113 original size:7 final size:7
Alignment explanation
Indices: 17918101--17918152 Score: 54
Period size: 7 Copynumber: 7.3 Consensus size: 7
17918091 CTCAAGTGTC
17918101 TTTTTCT
1 TTTTTCT
17918108 TTTTTCTT
1 TTTTTC-T
17918116 TTTTTCTT
1 TTTTTC-T
17918124 TTTTTCT
1 TTTTTCT
17918131 TTTTT-T
1 TTTTTCT
17918137 TTCTTT-T
1 TT-TTTCT
*
17918144 TTTTGCT
1 TTTTTCT
17918151 TT
1 TT
17918153 GAAAATTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
6 5 0.12
7 21 0.51
8 15 0.37
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.87
Consensus pattern (7 bp):
TTTTTCT
Found at i:17918118 original size:8 final size:8
Alignment explanation
Indices: 17918101--17918146 Score: 67
Period size: 8 Copynumber: 5.6 Consensus size: 8
17918091 CTCAAGTGTC
17918101 TTTTTC-T
1 TTTTTCTT
17918108 TTTTTCTT
1 TTTTTCTT
17918116 TTTTTCTT
1 TTTTTCTT
17918124 TTTTTCTTTT
1 TTTTTC--TT
17918134 TTTTTCTT
1 TTTTTCTT
17918142 TTTTT
1 TTTTT
17918147 TGCTTTGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
7 6 0.17
8 22 0.61
10 8 0.22
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTCTT
Found at i:17918127 original size:10 final size:10
Alignment explanation
Indices: 17918099--17918152 Score: 60
Period size: 10 Copynumber: 5.5 Consensus size: 10
17918089 TACTCAAGTG
17918099 TCTTTTTCTTT
1 TCTTTTT-TTT
17918110 T-TTCTTTTTT
1 TCTT-TTTTTT
17918120 TC--TTTTTT
1 TCTTTTTTTT
17918128 TCTTTTTTTT
1 TCTTTTTTTT
17918138 TCTTTTTTTT
1 TCTTTTTTTT
*
17918148 GCTTT
1 TCTTT
17918153 GAAAATTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
8 8 0.21
10 26 0.68
11 4 0.11
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:17919389 original size:86 final size:86
Alignment explanation
Indices: 17919290--17919461 Score: 317
Period size: 86 Copynumber: 2.0 Consensus size: 86
17919280 TTTGGACATC
17919290 AAAAATTTAAAAAAAATGCAAATTGAGCATTGCCATTAACAACCACTTTCATTTTAGTCACCTAA
1 AAAAATTTAAAAAAAATGCAAATTGAGCATTGCCATTAACAACCACTTTCATTTTAGTCACCTAA
17919355 TTACTTTAATAAGTTTTTATT
66 TTACTTTAATAAGTTTTTATT
* * *
17919376 AAAAATTTTAAAAAAATGCAAATTGAGCATTGCCATTGACAACCATTTTCATTTTAGTCACCTAA
1 AAAAATTTAAAAAAAATGCAAATTGAGCATTGCCATTAACAACCACTTTCATTTTAGTCACCTAA
17919441 TTACTTTAATAAGTTTTTATT
66 TTACTTTAATAAGTTTTTATT
17919462 TTAGTCACTC
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.38
Consensus pattern (86 bp):
AAAAATTTAAAAAAAATGCAAATTGAGCATTGCCATTAACAACCACTTTCATTTTAGTCACCTAA
TTACTTTAATAAGTTTTTATT
Found at i:17919990 original size:21 final size:21
Alignment explanation
Indices: 17919952--17919996 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
17919942 ATTCCTAAAT
17919952 AAAATGAGTGATTAAAATTAA
1 AAAATGAGTGATTAAAATTAA
*
17919973 AAAATTAGATGATT-AAATTAA
1 AAAATGAG-TGATTAAAATTAA
17919994 AAA
1 AAA
17919997 TGAATGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.29
Consensus pattern (21 bp):
AAAATGAGTGATTAAAATTAA
Found at i:17925001 original size:12 final size:12
Alignment explanation
Indices: 17924984--17925008 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17924974 GGTGTTCATT
17924984 CGGTTAACCGAC
1 CGGTTAACCGAC
17924996 CGGTTAACCGAC
1 CGGTTAACCGAC
17925008 C
1 C
17925009 CGAAATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:17925182 original size:9 final size:9
Alignment explanation
Indices: 17925169--17925235 Score: 89
Period size: 9 Copynumber: 7.4 Consensus size: 9
17925159 TTTGGTTAAA
*
17925169 AATTAACCA
1 AATTAACCG
*
17925178 AATTAACTG
1 AATTAACCG
*
17925187 AATTACCCG
1 AATTAACCG
17925196 AATTAACCG
1 AATTAACCG
*
17925205 AATTACCCG
1 AATTAACCG
17925214 AATTAACCG
1 AATTAACCG
*
17925223 AATTAACCA
1 AATTAACCG
17925232 AATT
1 AATT
17925236 GAATCACTAC
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:17925208 original size:27 final size:27
Alignment explanation
Indices: 17925169--17925235 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
17925159 TTTGGTTAAA
* *
17925169 AATTAACCAAATTAACTGAATTACCCG
1 AATTAACCAAATTAACCGAATTAACCG
* *
17925196 AATTAACCGAATTACCCGAATTAACCG
1 AATTAACCAAATTAACCGAATTAACCG
17925223 AATTAACCAAATT
1 AATTAACCAAATT
17925236 GAATCACTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.25
Consensus pattern (27 bp):
AATTAACCAAATTAACCGAATTAACCG
Found at i:17926015 original size:18 final size:18
Alignment explanation
Indices: 17925992--17926026 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
17925982 GCCAGGTGCG
* *
17925992 TATCCTAGCCCTTATATA
1 TATCCTAACCATTATATA
17926010 TATCCTAACCATTATAT
1 TATCCTAACCATTATAT
17926027 GTTTCCTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.40
Consensus pattern (18 bp):
TATCCTAACCATTATATA
Found at i:17926482 original size:25 final size:25
Alignment explanation
Indices: 17926448--17926495 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
17926438 AATAAAATAA
*
17926448 AATTTGTTTTTAATATT-TTAATAGT
1 AATTTATTTTT-ATATTATTAATAGT
17926473 AATTTATTTTTATATTATTAATA
1 AATTTATTTTTATATTATTAATA
17926496 TATTTGTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (25 bp):
AATTTATTTTTATATTATTAATAGT
Found at i:17926573 original size:25 final size:25
Alignment explanation
Indices: 17926539--17926586 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
17926529 TAATAAAATA
*
17926539 AATTTGTTTTTAATATTT-TAATAGT
1 AATTTATTTTT-ATATTTCTAATAGT
17926564 AATTTATTTTTATATTTCTAATA
1 AATTTATTTTTATATTTCTAATA
17926587 AAATAGAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (25 bp):
AATTTATTTTTATATTTCTAATAGT
Found at i:17926628 original size:8 final size:9
Alignment explanation
Indices: 17926612--17926641 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
17926602 TGAATAAGGC
17926612 AATATTTTT
1 AATATTTTT
17926621 AATATTTTT
1 AATATTTTT
17926630 -ATATTTTT
1 AATATTTTT
17926638 AATA
1 AATA
17926642 AAATATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (9 bp):
AATATTTTT
Found at i:17929821 original size:16 final size:15
Alignment explanation
Indices: 17929788--17929819 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
17929778 CAGAACTGTC
17929788 TTCTCAAAATTATTT
1 TTCTCAAAATTATTT
*
17929803 TTCTCATAATTATTT
1 TTCTCAAAATTATTT
17929818 TT
1 TT
17929820 TCAGGAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.59
Consensus pattern (15 bp):
TTCTCAAAATTATTT
Found at i:17929856 original size:143 final size:140
Alignment explanation
Indices: 17929680--17929946 Score: 358
Period size: 143 Copynumber: 1.9 Consensus size: 140
17929670 TAAGGCCAAA
* * * * *
17929680 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCA-TCAATTTTACTGACAGTG
1 CAGGAACTACTGTAAAAAAAAAACATCCACGTGGGAGCTTTTTTCAGT-AATTTTACTAACAGTG
* * *
17929744 TATCCTGCTTGAAGCGTTTTTTACACCAT-TTGTTCAGAACTGTCTTCTCAAAATTATTTTTCTC
65 CATCATGCTTGAAGCATTTTTTACACCATCTT-TTCAGAAC-GTCTTCTCAAAATTATTTTTCTC
17929808 ATAATTATTTTTT
128 ATAATTATTTTTT
*
17929821 CAGGAACTACTGTAAAAAAAAAAAACATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGT
1 CAGGAACTACTGT--AAAAAAAAAACATCCACGTGGGAGCTTTTTTCAGTAATTTTACTAACAGT
* * **
17929886 GCATCATGTTTGAAGCATTTTTTATATTATCTTTTCAGAACGTCTTCTCAAAATTATTTTT
64 GCATCATGCTTGAAGCATTTTTTACACCATCTTTTCAGAACGTCTTCTCAAAATTATTTTT
17929947 TTCAAAAACT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
141 13 0.12
142 20 0.18
143 73 0.67
144 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (140 bp):
CAGGAACTACTGTAAAAAAAAAACATCCACGTGGGAGCTTTTTTCAGTAATTTTACTAACAGTGC
ATCATGCTTGAAGCATTTTTTACACCATCTTTTCAGAACGTCTTCTCAAAATTATTTTTCTCATA
ATTATTTTTT
Found at i:17930100 original size:34 final size:33
Alignment explanation
Indices: 17930020--17930148 Score: 132
Period size: 34 Copynumber: 3.8 Consensus size: 33
17930010 CTAAACACAA
* * *
17930020 AATTATTTATAAAAAACTTAAACCATAATTTAATT
1 AATT-TTT-TAAAAACCCTAAACCCTAATTTAATT
* *
17930055 AATTCTCTTAAAAACCCTAATCCCTAATTTAATT
1 AATT-TTTTAAAAACCCTAAACCCTAATTTAATT
* * * *
17930089 AATTTATTTAAAATCCCAAAAACTTAATTTAATT
1 AATTT-TTTAAAAACCCTAAACCCTAATTTAATT
*
17930123 AATTTTTAAAAAACCCTAAACCCTAA
1 AATTTTTTAAAAACCCTAAACCCTAA
17930149 ACCTACCAAA
Statistics
Matches: 76, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
33 17 0.22
34 53 0.70
35 6 0.08
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (33 bp):
AATTTTTTAAAAACCCTAAACCCTAATTTAATT
Found at i:17932567 original size:2 final size:2
Alignment explanation
Indices: 17932562--17932592 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
17932552 ATATATAAAT
*
17932562 AG AG AG AG AG AG AG AG AG AG AG AA AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
17932593 AATAGTATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:17940571 original size:11 final size:11
Alignment explanation
Indices: 17940557--17940620 Score: 50
Period size: 11 Copynumber: 6.3 Consensus size: 11
17940547 ATTTTTTAAA
17940557 TTTTAAAATAT
1 TTTTAAAATAT
17940568 TTTTAAAATACT
1 TTTTAAAATA-T
**
17940580 TTTT--TTTAT
1 TTTTAAAATAT
*
17940589 TTTT--TA-AT
1 TTTTAAAATAT
17940597 -TTTAAAATAT
1 TTTTAAAATAT
17940607 TTTTAAAATAT
1 TTTTAAAATAT
17940618 TTT
1 TTT
17940621 AAAGTACTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
7 3 0.07
8 2 0.05
9 7 0.16
10 4 0.09
11 23 0.52
12 5 0.11
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:17940583 original size:39 final size:39
Alignment explanation
Indices: 17940537--17940620 Score: 134
Period size: 39 Copynumber: 2.2 Consensus size: 39
17940527 TAAATATATT
17940537 TATTTTTTAAATTTTTTAAATTTTAAAATATTTTTAAAA
1 TATTTTTTAAATTTTTTAAATTTTAAAATATTTTTAAAA
**
17940576 TACTTTTTTTTATTTTTT-AATTTTAAAATATTTTTAAAA
1 TA-TTTTTTAAATTTTTTAAATTTTAAAATATTTTTAAAA
17940615 TATTTT
1 TATTTT
17940621 AAAGTACTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
38 4 0.10
39 25 0.60
40 13 0.31
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (39 bp):
TATTTTTTAAATTTTTTAAATTTTAAAATATTTTTAAAA
Found at i:17940589 original size:49 final size:50
Alignment explanation
Indices: 17940535--17940646 Score: 149
Period size: 49 Copynumber: 2.3 Consensus size: 50
17940525 AATAAATATA
**
17940535 TTTATTTTTTAAATTTTTTAA-A-TTTTAAAATATTTTTAAAATACTTTTT
1 TTTATTTTTTAAATTTTAAAATATTTTTAAAATA-TTTTAAAATACTTTTT
*
17940584 TTTATTTTTT-AATTTTAAAATATTTTTAAAATATTTTAAAGTACTTTTT
1 TTTATTTTTTAAATTTTAAAATATTTTTAAAATATTTTAAAATACTTTTT
* *
17940633 TTAATTTTTAAAAT
1 TTTATTTTTTAAAT
17940647 AAATTTTTGG
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
48 8 0.15
49 34 0.62
50 13 0.24
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.62
Consensus pattern (50 bp):
TTTATTTTTTAAATTTTAAAATATTTTTAAAATATTTTAAAATACTTTTT
Found at i:17940632 original size:39 final size:40
Alignment explanation
Indices: 17940548--17940647 Score: 123
Period size: 39 Copynumber: 2.5 Consensus size: 40
17940538 ATTTTTTAAA
***
17940548 TTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTTTA-
1 TTTTTT-AATTTTAAAATATTTTTAAAATACTTTTAAGTAC
17940588 TTTTTTAATTTTAAAATATTTTTAAAATA-TTTTAAAGTAC
1 TTTTTTAATTTTAAAATATTTTTAAAATACTTTT-AAGTAC
17940628 TTTTTTTAATTTTTAAAATA
1 -TTTTTTAA-TTTTAAAATA
17940648 AATTTTTGGT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
38 4 0.08
39 25 0.47
40 6 0.11
41 8 0.15
42 10 0.19
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (40 bp):
TTTTTTAATTTTAAAATATTTTTAAAATACTTTTAAGTAC
Found at i:17940653 original size:21 final size:20
Alignment explanation
Indices: 17940587--17940654 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 20
17940577 ACTTTTTTTT
17940587 ATTTTTTAA-TTTTAAAAT-
1 ATTTTTTAATTTTTAAAATA
* *
17940605 ATTTTTAAAATATTTTAAAGTA
1 ATTTTT-TAAT-TTTTAAAATA
*
17940627 CTTTTTTTAATTTTTAAAATAA
1 -ATTTTTTAATTTTTAAAAT-A
17940649 ATTTTT
1 ATTTTT
17940655 GGTATTTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 6 0.16
19 2 0.05
21 21 0.55
22 4 0.11
23 5 0.13
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (20 bp):
ATTTTTTAATTTTTAAAATA
Found at i:17949910 original size:41 final size:40
Alignment explanation
Indices: 17949822--17949966 Score: 130
Period size: 41 Copynumber: 3.5 Consensus size: 40
17949812 TAAAAACAGA
* * * * *
17949822 TTCACCGGCATTTAGCCTGCTAGGCTTAAAGCCTG-ATTCAG
1 TTCACCGGCA-TTAGCCTGCTAGACATATAGCCTGAAAT-AT
*
17949863 TACACCGGCACTTAGCCTGCTAGACATATAGCCTGAAATAT
1 TTCACCGGCA-TTAGCCTGCTAGACATATAGCCTGAAATAT
* * * * *
17949904 TTCACCGGCATTAAGCCTGTTAGACATTTAGTCTGAAGTGT
1 TTCACCGGCATT-AGCCTGCTAGACATATAGCCTGAAATAT
*
17949945 TTCACCGGCAATAAGCCTGCTA
1 TTCACCGGC-ATTAGCCTGCTA
17949967 AGCGCTAAGC
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
40 2 0.02
41 80 0.93
42 4 0.05
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
TTCACCGGCATTAGCCTGCTAGACATATAGCCTGAAATAT
Found at i:17949981 original size:41 final size:41
Alignment explanation
Indices: 17949865--17949982 Score: 98
Period size: 41 Copynumber: 2.9 Consensus size: 41
17949855 TGATTCAGTA
* *
17949865 CACCGGCACTTAGCCTGCT-AGACA-TATAGCCTGAAATATTT
1 CACCGGCAATAAGCCTG-TAAGACACTA-AGCCTGAAATATTT
* * * * * * *
17949906 CACCGGCATTAAGCCTGTTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCAATAAGCCTGTAAGACACTAAGCCTGAAATATTT
*
17949947 CACCGGCAATAAGCCTGCTAAG-CGCTAAGCCTGAAA
1 CACCGGCAATAAGCCTG-TAAGACACTAAGCCTGAAA
17949983 ATCTCACTTT
Statistics
Matches: 61, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
40 1 0.02
41 56 0.92
42 4 0.07
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGTAAGACACTAAGCCTGAAATATTT
Found at i:17951568 original size:13 final size:13
Alignment explanation
Indices: 17951550--17951574 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17951540 CAATCAAATG
17951550 CACACAAAATAAA
1 CACACAAAATAAA
17951563 CACACAAAATAA
1 CACACAAAATAA
17951575 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:17966209 original size:16 final size:16
Alignment explanation
Indices: 17966190--17966220 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17966180 AAATTGTTAT
*
17966190 CTTTTTAATTTAATCC
1 CTTTATAATTTAATCC
17966206 CTTTATAATTTAATC
1 CTTTATAATTTAATC
17966221 ACAATTATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (16 bp):
CTTTATAATTTAATCC
Found at i:17966403 original size:21 final size:22
Alignment explanation
Indices: 17966379--17966423 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
17966369 TCTTTAAAGT
* *
17966379 TTTTTTAATTTTA-AAAATTAA
1 TTTTATAATTTTAGAAAATAAA
17966400 TTTTATAATTTTAGAAAATAAA
1 TTTTATAATTTTAGAAAATAAA
17966422 TT
1 TT
17966424 ATGAATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TTTTATAATTTTAGAAAATAAA
Found at i:17966403 original size:22 final size:23
Alignment explanation
Indices: 17966373--17966423 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
17966363 GATTTTTCTT
*
17966373 TAAAGTTTTTTTAATTTTA-AAAA
1 TAAA-TTTTTATAATTTTAGAAAA
*
17966396 TTAA-TTTTATAATTTTAGAAAA
1 TAAATTTTTATAATTTTAGAAAA
17966418 TAAATT
1 TAAATT
17966424 ATGAATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
21 12 0.52
22 7 0.30
23 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (23 bp):
TAAATTTTTATAATTTTAGAAAA
Found at i:17966430 original size:21 final size:21
Alignment explanation
Indices: 17966384--17966432 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
17966374 AAAGTTTTTT
*
17966384 TAATTTTAAAAATTAATTTTA
1 TAATTTTAAAAATTAATATTA
17966405 TAATTTTAGAAAA-TAA-ATTA
1 TAATTTTA-AAAATTAATATTA
17966425 TGAATTTT
1 T-AATTTT
17966433 TAGATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 17 0.68
22 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (21 bp):
TAATTTTAAAAATTAATATTA
Found at i:17969423 original size:12 final size:13
Alignment explanation
Indices: 17969408--17969527 Score: 67
Period size: 12 Copynumber: 9.5 Consensus size: 13
17969398 AAATTTATTT
17969408 TAAAAA-TTAAAA
1 TAAAAATTTAAAA
17969420 TAAAAATTTAAAA
1 TAAAAATTTAAAA
*
17969433 -AAAGTATTTAAAA
1 TAAA-AATTTAAAA
* *
17969446 -AATATTTTAAAA
1 TAAAAATTTAAAA
*
17969458 TTAAAAAAATTAAAA
1 -T-AAAAATTTAAAA
* *
17969473 -AAAGTATTTTAAA
1 TAAA-AATTTAAAA
17969486 -AAAAATTT-AAA
1 TAAAAATTTAAAA
*
17969497 -AAAATTTTAAAA
1 TAAAAATTTAAAA
*
17969509 TTAAAAAATTAAAA
1 -TAAAAATTTAAAA
17969523 -AAAAA
1 TAAAAA
17969528 GTATTTTAAA
Statistics
Matches: 85, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
11 10 0.12
12 31 0.36
13 25 0.29
14 10 0.12
15 9 0.11
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (13 bp):
TAAAAATTTAAAA
Found at i:17969435 original size:11 final size:11
Alignment explanation
Indices: 17969409--17969508 Score: 68
Period size: 11 Copynumber: 9.1 Consensus size: 11
17969399 AATTTATTTT
*
17969409 AAAAATTAAAA
1 AAAAATTTAAA
17969420 TAAAAATTTAAA
1 -AAAAATTTAAA
17969432 AAAAGTATTTAAA
1 AAAA--ATTTAAA
*
17969445 AAATATTT---
1 AAAAATTTAAA
*
17969453 TAAAA-TT-AA
1 AAAAATTTAAA
17969462 AAAAA-TTAAA
1 AAAAATTTAAA
17969472 AAAAGTATTTTAAA
1 AAAA--A-TTTAAA
17969486 AAAAATTTAAA
1 AAAAATTTAAA
*
17969497 AAAATTTTAAA
1 AAAAATTTAAA
17969508 A
1 A
17969509 TTAAAAAATT
Statistics
Matches: 73, Mismatches: 6, Indels: 19
0.74 0.06 0.19
Matches are distributed among these distances:
7 2 0.03
8 3 0.04
9 6 0.08
10 6 0.08
11 25 0.34
12 12 0.16
13 10 0.14
14 9 0.12
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (11 bp):
AAAAATTTAAA
Found at i:17969484 original size:41 final size:40
Alignment explanation
Indices: 17969414--17969565 Score: 141
Period size: 41 Copynumber: 3.6 Consensus size: 40
17969404 ATTTTAAAAA
*
17969414 TTAAAA-TAAAAATTTAAAAAAAGTA-TTTAAAAAATATT
1 TTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAAATATT
17969452 TTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAAAAATTTAAAAAAATT
1 TTAAAATT-AAAAAATTAAAAAAAGTATTTT--AAAAAA--T------ATT
*
17969503 TTAAAATTAAAAAATTAAAAAAAAAGTATTTT-AAAAGTATT
1 TTAAAATTAAAAAATT--AAAAAAAGTATTTTAAAAAATATT
17969544 TTAAAATTAAAAAA-TAAAAAAA
1 TTAAAATTAAAAAATTAAAAAAA
17969566 TAAAAAAAAT
Statistics
Matches: 97, Mismatches: 2, Indels: 30
0.75 0.02 0.23
Matches are distributed among these distances:
38 13 0.13
39 1 0.01
40 18 0.19
41 20 0.21
43 6 0.06
45 1 0.01
47 1 0.01
49 4 0.04
50 8 0.08
51 11 0.11
52 14 0.14
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (40 bp):
TTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAAATATT
Found at i:17969504 original size:51 final size:53
Alignment explanation
Indices: 17969409--17969538 Score: 162
Period size: 52 Copynumber: 2.5 Consensus size: 53
17969399 AATTTATTTT
* * *
17969409 AAAAATTAAAATAAA--AATTTAAAAAAAGTATTTAAAAAATATTTTAAAATTAA
1 AAAAATTAAAA-AAAGTATTTTAAAAAAAATATTAAAAAAATATTTTAAAATT-A
17969462 AAAAATTAAAAAAAGTATTTTAAAAAAAAT-TT-AAAAAA-ATTTTAAAATTA
1 AAAAATTAAAAAAAGTATTTTAAAAAAAATATTAAAAAAATATTTTAAAATTA
17969512 AAAAATTAAAAAAAAAGTATTTTAAAA
1 AAAAATT--AAAAAAAGTATTTTAAAA
17969539 GTATTTTAAA
Statistics
Matches: 71, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
50 8 0.11
51 11 0.15
52 27 0.38
53 13 0.18
54 12 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (53 bp):
AAAAATTAAAAAAAGTATTTTAAAAAAAATATTAAAAAAATATTTTAAAATTA
Found at i:17969538 original size:11 final size:11
Alignment explanation
Indices: 17969524--17969549 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17969514 AAATTAAAAA
17969524 AAAAGTATTTT
1 AAAAGTATTTT
17969535 AAAAGTATTTT
1 AAAAGTATTTT
17969546 AAAA
1 AAAA
17969550 TTAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:17969547 original size:52 final size:51
Alignment explanation
Indices: 17969432--17969549 Score: 168
Period size: 52 Copynumber: 2.3 Consensus size: 51
17969422 AAAATTTAAA
17969432 AAAAGTATTTAAAAAATATTTTAAAATTAAAAAAATTAAAAAAAGTATTTT
1 AAAAGTATTTAAAAAATATTTTAAAATTAAAAAAATTAAAAAAAGTATTTT
**
17969483 AAAAAAAATTTAAAAAA-ATTTTAAAATT-AAAAAATTAAAAAAAAAGTATTTT
1 -AAAAGTATTTAAAAAATATTTTAAAATTAAAAAAATT--AAAAAAAGTATTTT
*
17969535 AAAAGTATTTTAAAA
1 AAAAGTATTTAAAAA
17969550 TTAAAAAATA
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
50 8 0.14
51 23 0.39
52 28 0.47
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (51 bp):
AAAAGTATTTAAAAAATATTTTAAAATTAAAAAAATTAAAAAAAGTATTTT
Found at i:17970162 original size:10 final size:10
Alignment explanation
Indices: 17970147--17970220 Score: 61
Period size: 9 Copynumber: 7.9 Consensus size: 10
17970137 TAATAAAAAA
17970147 TATAAAAATC
1 TATAAAAATC
*
17970157 T-TTAAAAT-
1 TATAAAAATC
17970165 TATAAAAA-C
1 TATAAAAATC
17970174 TATAAAAATC
1 TATAAAAATC
17970184 T-TAAAAAAT-
1 TAT-AAAAATC
17970193 TATAAAAAT-
1 TATAAAAATC
* * *
17970202 TGTAAAATTT
1 TATAAAAATC
17970212 TATAAAAAT
1 TATAAAAAT
17970221 AAAAGAATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.02
9 34 0.65
10 17 0.33
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.35
Consensus pattern (10 bp):
TATAAAAATC
Found at i:17970177 original size:27 final size:28
Alignment explanation
Indices: 17970139--17970234 Score: 101
Period size: 27 Copynumber: 3.5 Consensus size: 28
17970129 ATAAATTTTA
*
17970139 ATAAAAAATATAAAAATCTT-TAAAATT
1 ATAAAAAATATAAAAATCTTAAAAAATT
*
17970166 ATAAAAACTATAAAAATCTTAAAAAATT
1 ATAAAAAATATAAAAATCTTAAAAAATT
* * *
17970194 ATAAAAATTGT-AAAATTTTATAAAAA-T
1 ATAAAAAATATAAAAATCTTA-AAAAATT
*
17970221 A-AAAGAATATAAAA
1 ATAAAAAATATAAAA
17970235 GGTATAGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.10
27 32 0.55
28 20 0.34
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (28 bp):
ATAAAAAATATAAAAATCTTAAAAAATT
Found at i:17970207 original size:19 final size:19
Alignment explanation
Indices: 17970168--17970220 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
17970158 TTAAAATTAT
*
17970168 AAAAACTATAAAAATCTTA
1 AAAAATTATAAAAATCTTA
17970187 AAAAATTATAAAAAT-TGTA
1 AAAAATTATAAAAATCT-TA
**
17970206 AAATTTTATAAAAAT
1 AAAAATTATAAAAAT
17970221 AAAAGAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 1 0.03
19 29 0.97
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (19 bp):
AAAAATTATAAAAATCTTA
Found at i:17970530 original size:9 final size:9
Alignment explanation
Indices: 17970518--17970623 Score: 86
Period size: 10 Copynumber: 10.8 Consensus size: 9
17970508 TTTTTGATGC
17970518 TTTTTATAA
1 TTTTTATAA
17970527 TTTTTATAAA
1 TTTTTAT-AA
* *
17970537 ATTTTACAAA
1 TTTTTA-TAA
*
17970547 ATTTTATAA
1 TTTTTATAA
*
17970556 TTTTTTACAA
1 -TTTTTATAA
17970566 TTTTTATAA
1 TTTTTATAA
17970575 TTTTTTATAA
1 -TTTTTATAA
17970585 TTTTTTAAAATAA
1 -TTTTT---ATAA
17970598 TTTTTATAA
1 TTTTTATAA
*
17970607 TTTTTATTGA
1 TTTTTA-TAA
17970617 TTTTTAT
1 TTTTTAT
17970624 TTTTATACTT
Statistics
Matches: 82, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
9 28 0.34
10 45 0.55
12 5 0.06
13 4 0.05
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:17970531 original size:10 final size:10
Alignment explanation
Indices: 17970518--17970611 Score: 93
Period size: 10 Copynumber: 9.4 Consensus size: 10
17970508 TTTTTGATGC
17970518 TTTTTATAA-
1 TTTTTATAAT
*
17970527 TTTTTATAAA
1 TTTTTATAAT
* * *
17970537 ATTTTACAAA
1 TTTTTATAAT
*
17970547 ATTTTATAAT
1 TTTTTATAAT
*
17970557 TTTTTACAA-
1 TTTTTATAAT
17970566 TTTTTATAAT
1 TTTTTATAAT
17970576 TTTTTATAAT
1 TTTTTATAAT
*
17970586 TTTTTAAAAT
1 TTTTTATAAT
17970596 AATTTTTATAAT
1 --TTTTTATAAT
17970608 TTTT
1 TTTT
17970612 ATTGATTTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
9 17 0.24
10 46 0.64
12 9 0.12
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:17970552 original size:29 final size:28
Alignment explanation
Indices: 17970519--17970595 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 28
17970509 TTTTGATGCT
17970519 TTTTATAATTTTTATAAAATTTTACAAAA
1 TTTTATAATTTTT-TAAAATTTTACAAAA
* * **
17970548 TTTTATAATTTTTTACAATTTTTATAATT
1 TTTTATAATTTTTTA-AAATTTTACAAAA
17970577 TTTTATAATTTTTTAAAAT
1 TTTTATAATTTTTTAAAAT
17970596 AATTTTTATA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (28 bp):
TTTTATAATTTTTTAAAATTTTACAAAA
Found at i:17970907 original size:90 final size:89
Alignment explanation
Indices: 17970738--17971007 Score: 324
Period size: 90 Copynumber: 3.1 Consensus size: 89
17970728 TGGTTAAAGA
* * * *
17970738 GTCTTTTTGATGCATTTT-ATAGTTCAAGTACCTAATTGAGTG-AAAAAAGATTAA-GGGCTTAA
1 GTCTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAA-A-AAAGGGGCTTAA
*
17970800 TTGATTTTTTTTGAAAAAGTTTGAGG
64 TTGCTTTTTTTTGAAAAAGTTTGAGG
*
17970826 GTCTTTTTAATGCATTTTGAAAATTCAAGTACCCAATTGAGTGCAAAAAAAAAGAGGGGCTTAAT
1 GTCTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAA-AGGGGCTTAAT
*
17970891 TGCTTTTTTTTGAAAAAGTTTGAAG
65 TGCTTTTTTTTGAAAAAGTTTGAGG
* * * * * *
17970916 GCCTTTTTGATGTATTTTGAAAGTTTAAGTACCCAATTAAGTGC---AAAAAAAGGAGCTTAATT
1 GTCTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAGGGGCTTAATT
*
17970978 GCTTTTTTTT--TAAAGTTTGAGG
66 GCTTTTTTTTGAAAAAGTTTGAGG
17971000 G-CTTTTTA
1 GTCTTTTTA
17971008 CACCATTAAG
Statistics
Matches: 161, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
83 6 0.04
84 11 0.07
86 21 0.13
87 6 0.04
88 18 0.11
89 23 0.14
90 76 0.47
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (89 bp):
GTCTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAGGGGCTTAATT
GCTTTTTTTTGAAAAAGTTTGAGG
Found at i:17975232 original size:29 final size:31
Alignment explanation
Indices: 17975164--17975237 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 31
17975154 ATTGGAAAAA
* *
17975164 TTCTACTTTGGCCCTCATTCTTTGCTTCTTTC
1 TTCTA-TTTGGCCCTAATTCTTTCCTTCTTTC
*
17975196 TT-TAATTTGGCCC-AATTGTTTCCTT-TTTC
1 TTCT-ATTTGGCCCTAATTCTTTCCTTCTTTC
*
17975225 TTCTATTTAGCCC
1 TTCTATTTGGCCC
17975238 CAAATTGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
29 14 0.39
30 10 0.28
31 9 0.25
32 3 0.08
ACGTcount: A:0.11, C:0.27, G:0.09, T:0.53
Consensus pattern (31 bp):
TTCTATTTGGCCCTAATTCTTTCCTTCTTTC
Found at i:17976129 original size:17 final size:18
Alignment explanation
Indices: 17976107--17976148 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
17976097 AGCAGCCCAT
17976107 ACATTTCACA-AATTTAC
1 ACATTTCACACAATTTAC
* *
17976124 ACATTTAACACAATTTTC
1 ACATTTCACACAATTTAC
17976142 ACATTTC
1 ACATTTC
17976149 TCAATTTAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (18 bp):
ACATTTCACACAATTTAC
Found at i:17984869 original size:49 final size:49
Alignment explanation
Indices: 17984797--17984910 Score: 201
Period size: 49 Copynumber: 2.3 Consensus size: 49
17984787 CTTAAACGCC
* * *
17984797 ATGTCTTAAGACTTGCCTCTCATGAAACAAACTTTAACTATTTCTTCGA
1 ATGTCTTGAGACTTACCTCTCATGAAACAAACTTTAACTATTCCTTCGA
17984846 ATGTCTTGAGACTTACCTCTCATGAAACAAACTTTAACTATTCCTTCGA
1 ATGTCTTGAGACTTACCTCTCATGAAACAAACTTTAACTATTCCTTCGA
17984895 ATGTCTTGAGACTTAC
1 ATGTCTTGAGACTTAC
17984911 ATATAGAAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 62 1.00
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (49 bp):
ATGTCTTGAGACTTACCTCTCATGAAACAAACTTTAACTATTCCTTCGA
Found at i:17988493 original size:22 final size:21
Alignment explanation
Indices: 17988459--17988519 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
17988449 TAAATGAAAA
17988459 AAATATAAAAATATAAA-ATTTT
1 AAATA-AAAAATATAAATA-TTT
17988481 AAATAAAAGAATATAAATATTT
1 AAATAAAA-AATATAAATATTT
* *
17988503 AAA-AAAAATTAAAAATA
1 AAATAAAAAATATAAATA
17988520 ATATTGACTG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 8 0.23
21 7 0.20
22 19 0.54
23 1 0.03
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (21 bp):
AAATAAAAAATATAAATATTT
Found at i:17988495 original size:30 final size:31
Alignment explanation
Indices: 17988449--17988506 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
17988439 ATAATTTTAA
17988449 TAAATGAAAAAAATATAAAAATATAAAATTT
1 TAAATGAAAAAAATATAAAAATATAAAATTT
* * *
17988480 TAAAT-AAAAGAATATAAATATTTAAAA
1 TAAATGAAAAAAATATAAAAATATAAAA
17988507 AAAATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.29
Consensus pattern (31 bp):
TAAATGAAAAAAATATAAAAATATAAAATTT
Found at i:17991221 original size:5 final size:5
Alignment explanation
Indices: 17991211--17991235 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
17991201 GACATTATTT
17991211 ATTAA ATTAA ATTAA ATTAA ATTAA
1 ATTAA ATTAA ATTAA ATTAA ATTAA
17991236 TTTTTCCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTAA
Found at i:17991854 original size:31 final size:31
Alignment explanation
Indices: 17991819--17991877 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
17991809 TCTTATTTTA
17991819 TCTCATAGTAACCATTACATCTTCCTTCGTG
1 TCTCATAGTAACCATTACATCTTCCTTCGTG
17991850 TCTCATAGTAACCATTACATCTTCCTTC
1 TCTCATAGTAACCATTACATCTTCCTTC
17991878 ATGAAAAGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.31, G:0.07, T:0.39
Consensus pattern (31 bp):
TCTCATAGTAACCATTACATCTTCCTTCGTG
Found at i:17992341 original size:20 final size:21
Alignment explanation
Indices: 17992299--17992341 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
17992289 TTCAATTTTC
**
17992299 ACAAAAAGTATCGATATCTTT
1 ACAAAAAGTATCGATATAATT
17992320 ACAAAAAGTATCGATA-AATT
1 ACAAAAAGTATCGATATAATT
17992340 AC
1 AC
17992342 CTTAGGTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (21 bp):
ACAAAAAGTATCGATATAATT
Found at i:18002766 original size:17 final size:17
Alignment explanation
Indices: 18002744--18002778 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
18002734 CTTGAACGTG
18002744 AATCCATTATTTATTCA
1 AATCCATTATTTATTCA
* *
18002761 AATCCATTGTTTGTTCA
1 AATCCATTATTTATTCA
18002778 A
1 A
18002779 CGGTTACATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (17 bp):
AATCCATTATTTATTCA
Found at i:18006926 original size:27 final size:27
Alignment explanation
Indices: 18006894--18006946 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
18006884 TAGTAATAAT
* *
18006894 AATAACATAAACATTTTTTTTATAGAA
1 AATAACACAAACATTTATTTTATAGAA
*
18006921 AATAACACAAACATTTATTTTCTAGA
1 AATAACACAAACATTTATTTTATAGA
18006947 TTATGAGGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (27 bp):
AATAACACAAACATTTATTTTATAGAA
Found at i:18007171 original size:17 final size:19
Alignment explanation
Indices: 18007149--18007186 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
18007139 ATAAACTTAA
18007149 AATTGTATTA-T-ATTTGT
1 AATTGTATTAGTAATTTGT
*
18007166 AATTGTGTTAGTAATTTGT
1 AATTGTATTAGTAATTTGT
18007185 AA
1 AA
18007187 AAATTGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 1 0.06
19 8 0.44
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.53
Consensus pattern (19 bp):
AATTGTATTAGTAATTTGT
Found at i:18008818 original size:23 final size:22
Alignment explanation
Indices: 18008791--18008842 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
18008781 ACAAATTTTG
*
18008791 AAAATAAAATTCATAAATATTAA
1 AAAATAAAATCCATAAAT-TTAA
* * *
18008814 TAAATATAATCCATTAATTTAA
1 AAAATAAAATCCATAAATTTAA
18008836 AAAATAA
1 AAAATAA
18008843 TCCAAAACAT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATAAAATCCATAAATTTAA
Found at i:18011797 original size:22 final size:22
Alignment explanation
Indices: 18011772--18011813 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
18011762 GCTGTGTGAT
18011772 AGAGCATGGACCATGTGGCTCC
1 AGAGCATGGACCATGTGGCTCC
*
18011794 AGAGCATGGACCGTGTGGCT
1 AGAGCATGGACCATGTGGCT
18011814 ATCCTACACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.24, G:0.36, T:0.19
Consensus pattern (22 bp):
AGAGCATGGACCATGTGGCTCC
Found at i:18015176 original size:15 final size:15
Alignment explanation
Indices: 18015156--18015188 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
18015146 ATACAAATTT
18015156 AATTATATACTGGTG
1 AATTATATACTGGTG
*
18015171 AATTATATATTGGTG
1 AATTATATACTGGTG
18015186 AAT
1 AAT
18015189 ATAAGACCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.42
Consensus pattern (15 bp):
AATTATATACTGGTG
Found at i:18016811 original size:18 final size:19
Alignment explanation
Indices: 18016771--18016811 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
18016761 GAAGCTGCTT
18016771 TAAAAAAACGTTAAATTAA
1 TAAAAAAACGTTAAATTAA
18016790 -AAAAAAA-GTTATAA-TAA
1 TAAAAAAACGTTA-AATTAA
18016807 TAAAA
1 TAAAA
18016812 CAAAAGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (19 bp):
TAAAAAAACGTTAAATTAA
Found at i:18019874 original size:27 final size:27
Alignment explanation
Indices: 18019827--18019890 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
18019817 AAATATTCTC
18019827 TAAATTAAT-AAATATTAATTTATCAA
1 TAAATTAATAAAATATTAATTTATCAA
* *
18019853 TAAATTAATAAAATATTCATTTATCGA
1 TAAATTAATAAAATATTAATTTATCAA
*
18019880 TAAACTAATAA
1 TAAATTAATAA
18019891 TCTCGATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 9 0.26
27 25 0.74
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (27 bp):
TAAATTAATAAAATATTAATTTATCAA
Found at i:18019898 original size:17 final size:17
Alignment explanation
Indices: 18019876--18019908 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
18019866 TATTCATTTA
*
18019876 TCGATAAACTAATAATC
1 TCGATAAAATAATAATC
18019893 TCGATAAAATAATAAT
1 TCGATAAAATAATAAT
18019909 TTTTCGGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (17 bp):
TCGATAAAATAATAATC
Found at i:18020309 original size:9 final size:8
Alignment explanation
Indices: 18020292--18020335 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
18020282 TACAAAACGT
18020292 AATTAAAA
1 AATTAAAA
18020300 AATATAAAA
1 AAT-TAAAA
**
18020309 AATTAATT
1 AATTAAAA
18020317 AATTAAAA
1 AATTAAAA
18020325 AATATAAAA
1 AAT-TAAAA
18020334 AA
1 AA
18020336 ATTCTAACTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
8 15 0.50
9 15 0.50
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
AATTAAAA
Found at i:18020314 original size:17 final size:16
Alignment explanation
Indices: 18020292--18020335 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
18020282 TACAAAACGT
18020292 AATTAAAAAATATAAAA
1 AATTAAAAAAT-TAAAA
**
18020309 AATTAATTAATTAAAA
1 AATTAAAAAATTAAAA
18020325 AATATAAAAAA
1 AAT-TAAAAAA
18020336 ATTCTAACTG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AATTAAAAAATTAAAA
Found at i:18023497 original size:152 final size:151
Alignment explanation
Indices: 18023217--18023518 Score: 559
Period size: 152 Copynumber: 2.0 Consensus size: 151
18023207 GCAAGCGTAG
*
18023217 TTTTGGTAAGTTCGTAGACTTGAACTTAACTTTTCTATTAATTATTTAATTAATCGATGTTATTT
1 TTTTGGTAAGTTCGTAGACTTGAACTTAACTTTTCTATTAATTATTTAATTAATCAATGTTATTT
*
18023282 TAATACTTGAAATACAATTTTATGTGTATTATCGAATAAAGATGTTAAGTGATGAATGAGGAAAT
66 TAATACTTGAAATAAAATTTTATGTGTATTATCGAATAAAGATGTTAAGTGATGAATGAGGAAAT
18023347 CGTGGAAGTAAATAAATACAA
131 CGTGGAAGTAAATAAATACAA
18023368 TTTTCGGTAAGTTCGTAGACTTGAACTTAACTTTTCTATTAATTATTTAATTAATCAATGTTATT
1 TTTT-GGTAAGTTCGTAGACTTGAACTTAACTTTTCTATTAATTATTTAATTAATCAATGTTATT
*
18023433 TTAATACTTGAAATAAAATTTTATGTGTATTATCGAATAAAGATGTTGAGTGATGAATGAGGAAA
65 TTAATACTTGAAATAAAATTTTATGTGTATTATCGAATAAAGATGTTAAGTGATGAATGAGGAAA
*
18023498 TCGTGGAAGTAAATAATTACA
130 TCGTGGAAGTAAATAAATACA
18023519 CAAATGTCGG
Statistics
Matches: 146, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
151 4 0.03
152 142 0.97
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (151 bp):
TTTTGGTAAGTTCGTAGACTTGAACTTAACTTTTCTATTAATTATTTAATTAATCAATGTTATTT
TAATACTTGAAATAAAATTTTATGTGTATTATCGAATAAAGATGTTAAGTGATGAATGAGGAAAT
CGTGGAAGTAAATAAATACAA
Found at i:18028956 original size:6 final size:6
Alignment explanation
Indices: 18028945--18028970 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
18028935 TAGCCACATG
18028945 CATCTA CATCTA CATCTA CATCTA CA
1 CATCTA CATCTA CATCTA CATCTA CA
18028971 CAAAATTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (6 bp):
CATCTA
Found at i:18030428 original size:17 final size:18
Alignment explanation
Indices: 18030398--18030434 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
18030388 AAATTAAATT
*
18030398 TAATATTAATTTTTTAAA
1 TAATATTAATTTTTGAAA
18030416 TAATATT-ATTTTTGAAA
1 TAATATTAATTTTTGAAA
18030433 TA
1 TA
18030435 GTTGATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TAATATTAATTTTTGAAA
Found at i:18039129 original size:42 final size:43
Alignment explanation
Indices: 18039057--18039184 Score: 131
Period size: 42 Copynumber: 3.0 Consensus size: 43
18039047 GTTTTACATG
*
18039057 TAATCAAATAACGATGCCACTGTCCCAGACAGGGTCTTACACA
1 TAATCAAATAACGATGCCAATGTCCCAGACAGGGTCTTACACA
* * * *
18039100 TAATCATAT-ACGATGCCAATGTCCTAGACATGGTCTTACACG
1 TAATCAAATAACGATGCCAATGTCCCAGACAGGGTCTTACACA
18039142 TAAATCTCAAAT--CGATGCC-ATCGTCCCAGAC-GTGGTCTTACAC
1 T-AA--TCAAATAACGATGCCAAT-GTCCCAGACAG-GGTCTTACAC
18039185 GAAATCACAT
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
42 30 0.42
43 12 0.17
44 25 0.35
45 5 0.07
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
TAATCAAATAACGATGCCAATGTCCCAGACAGGGTCTTACACA
Found at i:18041374 original size:3 final size:3
Alignment explanation
Indices: 18041366--18041392 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
18041356 AGATGACATG
18041366 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
18041393 CATGACATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:18050021 original size:210 final size:204
Alignment explanation
Indices: 18049661--18050074 Score: 659
Period size: 210 Copynumber: 2.0 Consensus size: 204
18049651 CCCTTTGATG
*
18049661 ATCTCGAGAGATATAAGATGATTGGGAAACTAAACTATCTTACTGTGACTGGTCCAAACATTATA
1 ATCTCGAGAGATATAAGATGATTGGGAAACTAAACTATCTTACAGTGACTGGTCCAAACATTATA
* * * *
18049726 TTTGCAGTGAGTATTGTCAGCTTATTCATGTCTGCACTTATAGTTAGACATTGGGTTATTGTTGA
66 TTTGCAGTGAGTATTGTCAGCTTATTCACGTCTGCACCTACAGTTAAACATTGGGTTATTGTTGA
* *
18049791 ACAAATTCTATGTTACTTAAAAGGAGCTTTAGGATTGGAAATATCATACAACAAACAATCATAGG
131 ACAAATTCTATGTTACTTAAAAAGAGCTTTAGGATTGGAAATATCAT---ACAAA-AATCATAGA
*
18049856 AATAGTCATTCCA
192 AATACTCATTCCA
*
18049869 ATCTCGAGAGATATAAGATGAAAGTTGGGAAATTAAACTATCTTACAG-GACTGGTCCAAACATT
1 ATCTCGAGAGATATAAGATG--A-TTGGGAAACTAAACTATCTTACAGTGACTGGTCCAAACATT
*
18049933 ATATTTGCAGTGAGTATTGTCGGCTTATTCACGTCTGCACCTACAGTTAAACATTGGGTTATTGT
63 ATATTTGCAGTGAGTATTGTCAGCTTATTCACGTCTGCACCTACAGTTAAACATTGGGTTATTGT
*
18049998 TGAACAAATTCTATGTTACTTAAAAAGAGCTTTAGGATTGGGAATATCATACAAAAATCATAGAA
128 TGAACAAATTCTATGTTACTTAAAAAGAGCTTTAGGATTGGAAATATCATACAAAAATCATAGAA
18050063 ATACTCATTCCA
193 ATACTCATTCCA
18050075 CCTACAGTTA
Statistics
Matches: 192, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
206 20 0.10
207 5 0.03
208 20 0.10
210 125 0.65
211 22 0.11
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (204 bp):
ATCTCGAGAGATATAAGATGATTGGGAAACTAAACTATCTTACAGTGACTGGTCCAAACATTATA
TTTGCAGTGAGTATTGTCAGCTTATTCACGTCTGCACCTACAGTTAAACATTGGGTTATTGTTGA
ACAAATTCTATGTTACTTAAAAAGAGCTTTAGGATTGGAAATATCATACAAAAATCATAGAAATA
CTCATTCCA
Found at i:18050149 original size:103 final size:103
Alignment explanation
Indices: 18049970--18050162 Score: 296
Period size: 103 Copynumber: 1.9 Consensus size: 103
18049960 TTCACGTCTG
** **
18049970 CACCTACAGTTAAACATTGGGTTATTGTTGAACAAATTCTATGTTACTTAAAAAGAGCTTTAGGA
1 CACCTACAGTTAAACATTGGGCGATTGTTGAACAAATTCTATGTTACCCAAAAAGAGCTTTAGGA
*
18050035 TTGGGAATATCATACAAAAATCATAGAAATACTCATTC
66 CTGGGAATATCATACAAAAATCATAGAAATACTCATTC
* * * *
18050073 CACCTACAGTTAAACATTGGGCGATTGTTGAATAGATTCTATGTTACCCAAAAGGAGCTTTAGGG
1 CACCTACAGTTAAACATTGGGCGATTGTTGAACAAATTCTATGTTACCCAAAAAGAGCTTTAGGA
*
18050138 CTGGGAATATCATACAACAATCATA
66 CTGGGAATATCATACAAAAATCATA
18050163 TGACTAATCG
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
103 80 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (103 bp):
CACCTACAGTTAAACATTGGGCGATTGTTGAACAAATTCTATGTTACCCAAAAAGAGCTTTAGGA
CTGGGAATATCATACAAAAATCATAGAAATACTCATTC
Found at i:18056678 original size:15 final size:16
Alignment explanation
Indices: 18056637--18056684 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
18056627 AGTATAATAG
*
18056637 TATAATATATTATTTA
1 TATAATATATGATTTA
*
18056653 TA-AAAATATGATTTA
1 TATAATATATGATTTA
18056668 TATAATA-ATGACTTTA
1 TATAATATATGA-TTTA
18056684 T
1 T
18056685 GAATATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (16 bp):
TATAATATATGATTTA
Found at i:18060937 original size:13 final size:13
Alignment explanation
Indices: 18060919--18060943 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18060909 ATACGGATAT
18060919 ACAAAAAAAAAAA
1 ACAAAAAAAAAAA
18060932 ACAAAAAAAAAA
1 ACAAAAAAAAAA
18060944 TTGGGTGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (13 bp):
ACAAAAAAAAAAA
Found at i:18061184 original size:116 final size:114
Alignment explanation
Indices: 18060917--18061200 Score: 408
Period size: 116 Copynumber: 2.5 Consensus size: 114
18060907 AAATACGGAT
* * *
18060917 ATACAAAAAAAAAAAACAAAAAAAAAATTGGGTGCTGGCCTCTCAATGGCCGGCACCCAGTACAC
1 ATAC-AAAAAAATAAA-AAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAC
18060982 AGT---------AC-AAATTTTTTTTTTTCGTGTCAGAATCAGACAAAAAA
64 AGTACAAAGAAAACAAAATTTTTTTTTTTCGTGTCAGAATCAGACAAAAAA
18061023 ATACAAAAAAATAAAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAG
1 ATACAAAAAAATAAAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAG
*
18061088 TACAAAGAAAACAAAATTTATTTTTTTTCGTGTCAGAATCAGATAAAAAA
66 TACAAAGAAAACAAAATTT-TTTTTTTTCGTGTCAGAATCAGACAAAAAA
* *
18061138 ATACGAAAAAAATAAATAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACA
1 ATAC-AAAAAAATAAAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACA
18061201 AATTTAAAAA
Statistics
Matches: 160, Mismatches: 6, Indels: 14
0.89 0.03 0.08
Matches are distributed among these distances:
104 49 0.31
105 10 0.06
106 4 0.03
113 2 0.01
114 6 0.04
115 33 0.21
116 56 0.35
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.23
Consensus pattern (114 bp):
ATACAAAAAAATAAAAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAG
TACAAAGAAAACAAAATTTTTTTTTTTCGTGTCAGAATCAGACAAAAAA
Found at i:18061256 original size:116 final size:115
Alignment explanation
Indices: 18061004--18061237 Score: 296
Period size: 116 Copynumber: 2.1 Consensus size: 115
18060994 TTTTTTTCGT
* *
18061004 GTCAGAATCAGACAAAAAAATACAAAAAAATAAAAAAAAAAAATTTGGGTGCTGGCCTGTCAATG
1 GTCAGAATCAAATAAAAAAATACAAAAAAATAAAAAAAAAAAATTTGGGTGCTGGCCTGTCAATG
* ** ** * *
18061069 GCCGGCACCCAGTACACAGTACAAAGAAAACAAAATTTATTTTTTTTCGT
66 GCCGGCACCCAGTACACAATACAAAGAAAACAAAATGAATTTCGTGTCGA
* * *
18061119 GTCAGAATCAGATAAAAAAATACGAAAAAAATAAATAAAAAAATTTTGGGTGCTGGCCTGTCAAT
1 GTCAGAATCAAATAAAAAAATAC-AAAAAAATAAAAAAAAAAAATTTGGGTGCTGGCCTGTCAAT
**
18061184 GGCCGGCACCCAGTACA-AATTTAAA-AAAA-AAAA-GAATTTCGTGTCAGA
65 GGCCGGCACCCAGTACACAATACAAAGAAAACAAAATGAATTTCGTGTC-GA
18061232 GTCAGA
1 GTCAGA
18061238 TATAAATTTA
Statistics
Matches: 105, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
112 7 0.07
113 11 0.10
114 4 0.04
115 27 0.26
116 56 0.53
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (115 bp):
GTCAGAATCAAATAAAAAAATACAAAAAAATAAAAAAAAAAAATTTGGGTGCTGGCCTGTCAATG
GCCGGCACCCAGTACACAATACAAAGAAAACAAAATGAATTTCGTGTCGA
Found at i:18062538 original size:111 final size:108
Alignment explanation
Indices: 18062049--18062695 Score: 920
Period size: 111 Copynumber: 5.9 Consensus size: 108
18062039 AAAAAAAATC
18062049 TATCTGATTCTGACACGAAAAAAAA-AA--TTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGA
1 TATCTGATTCTGACACGAAAAAAAATAATTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGA
18062111 CAGGCCAGCACCCAAA--TTTTTTTTATTTTTTTCGTATTTTT
66 CAGGCCAGCACCCAAATTTTTTTTTTATTTTTTTCGTATTTTT
* *** *
18062152 TATCTGATTCTGACACGAAAAAAATAAAAAAAATTCTTTGTACTGTGTATTGGGTGCCGGCCATT
1 TATCTGATTCTGACACG-AAAAAA-AATAATTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATT
* * *
18062217 GACAGGCCAGCA-TCAAA-CTTTTTTTTACTTTTTTCGTATTTTTT
64 GACAGGCCAGCACCCAAATTTTTTTTTTATTTTTTTCGTA-TTTTT
*
18062261 TATCTGATTCTGACACG-AAAAAAATAAATTTT-TTTGTACTGTGTACTGGGTGCCGGCCATTGA
1 TATCTGATTCTGACACGAAAAAAAATAATTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGA
18062324 CAGGCCAGCACCCAAAATTTTTTTTTTATTTTTTTCGTATTTTT
66 CAGGCCAGCACCC-AAATTTTTTTTTTATTTTTTTCGTATTTTT
*
18062368 TATCTGATTCTGACACGAAAAAAAAATAAATTTTTTTTTCTTTGTACTGTGTACTGGGTGCCAGC
1 TATCTGATTCTGACACG-AAAAAAAAT-AA----TTTTTCTTTGTACTGTGTACTGGGTGCCGGC
*
18062433 CATTGACAGGCCAGCACCCAAATTTTTTTTTTA-TTTTTTCATATTTTT
60 CATTGACAGGCCAGCACCCAAATTTTTTTTTTATTTTTTTCGTATTTTT
18062481 TATCTGATTCTGACACGAAAAAAAATAATTTTTTTTTCTTTGTACTGTGTACTGGGTGCCGGCCA
1 TATCTGATTCTGACACGAAAAAAAATAA----TTTTTCTTTGTACTGTGTACTGGGTGCCGGCCA
18062546 TTGACAGGCCAGCACCCAAAATTTTTTTTTTATTTTTTTCGTATTTTTT
62 TTGACAGGCCAGCACCC-AAATTTTTTTTTTATTTTTTTCGTA-TTTTT
*
18062595 TATCTGATTCTGACACGAAAAAAAATAAAATTTTT-TTTGTACTGTGTACTGGGTGCCGACCATT
1 TATCTGATTCTGACACGAAAAAAAAT--AATTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATT
* *
18062659 GACAGGCCAGCACCAAAAATTTTTTTTTTGTTTTTTT
64 GACAGGCCAGCACC-CAAATTTTTTTTTTATTTTTTT
18062696 TCTTTTTCGT
Statistics
Matches: 501, Mismatches: 19, Indels: 40
0.89 0.03 0.07
Matches are distributed among these distances:
103 17 0.03
104 6 0.01
105 42 0.08
106 10 0.02
107 34 0.07
108 81 0.16
109 30 0.06
110 2 0.00
111 117 0.23
112 28 0.06
113 40 0.08
114 49 0.10
115 43 0.09
116 2 0.00
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (108 bp):
TATCTGATTCTGACACGAAAAAAAATAATTTTTCTTTGTACTGTGTACTGGGTGCCGGCCATTGA
CAGGCCAGCACCCAAATTTTTTTTTTATTTTTTTCGTATTTTT
Found at i:18065991 original size:25 final size:25
Alignment explanation
Indices: 18065957--18066054 Score: 99
Period size: 25 Copynumber: 4.0 Consensus size: 25
18065947 CAAAGCTCAT
18065957 ATGAGCTTCCCGTTATACAACTCGC
1 ATGAGCTTCCCGTTATACAACTCGC
* ** *
18065982 ATGAGCTTCCCATTATTTAACTCAC
1 ATGAGCTTCCCGTTATACAACTCGC
* * * *
18066007 ATGAGCTTCTCGTTATTCAGCTCGG
1 ATGAGCTTCCCGTTATACAACTCGC
* *
18066032 AAGAGCTTCCCGTT-TACAGCTCG
1 ATGAGCTTCCCGTTATACAACTCG
18066055 TATAAGCATA
Statistics
Matches: 60, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
24 8 0.13
25 52 0.87
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATACAACTCGC
Found at i:18067628 original size:37 final size:37
Alignment explanation
Indices: 18067586--18067660 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
18067576 TTCTTGTCAC
*
18067586 TATATATTTTGGAATTAAAAAATATATTAAATATAAAAA
1 TATA-ATTTTGGAA-TAAAAAATATATTAAAAATAAAAA
** * *
18067625 TATAATTTTTTAATAAAAATTATTTTAAAAATAAAA
1 TATAATTTTGGAATAAAAAATATATTAAAAATAAAA
18067661 TGTGAAATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 20 0.65
38 7 0.23
39 4 0.13
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (37 bp):
TATAATTTTGGAATAAAAAATATATTAAAAATAAAAA
Found at i:18068655 original size:21 final size:20
Alignment explanation
Indices: 18068629--18068681 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
18068619 AGCAGTGACG
*
18068629 GTGAGATTAGTTACTGTAGC
1 GTGAGATTAGATACTGTAGC
*
18068649 AGTGAGATTGGATACTGTAGC
1 -GTGAGATTAGATACTGTAGC
18068670 GATGAGATTAGA
1 G-TGAGATTAGA
18068682 AACAATAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (20 bp):
GTGAGATTAGATACTGTAGC
Found at i:18068887 original size:30 final size:30
Alignment explanation
Indices: 18068850--18069005 Score: 233
Period size: 30 Copynumber: 5.2 Consensus size: 30
18068840 ATTCATTTAA
*
18068850 TAAAATACACTACATATATTTTTTTATTTC
1 TAAAATACACTACATATATTTTTTTATTTT
*
18068880 TAGAATACACTACATATA-TTTTTTATTTT
1 TAAAATACACTACATATATTTTTTTATTTT
* *
18068909 GAAAATACAATACATATATTTTTTTTATTTT
1 TAAAATACACTACATATA-TTTTTTTATTTT
*
18068940 TAAAATACACTACATGTATTTTTTTATTTT
1 TAAAATACACTACATATATTTTTTTATTTT
* *
18068970 TAAAATCCATTACATATATTTTTTTATTTT
1 TAAAATACACTACATATATTTTTTTATTTT
18069000 TAAAAT
1 TAAAAT
18069006 TTTAAATACA
Statistics
Matches: 113, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
29 25 0.22
30 62 0.55
31 26 0.23
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.52
Consensus pattern (30 bp):
TAAAATACACTACATATATTTTTTTATTTT
Found at i:18075099 original size:98 final size:98
Alignment explanation
Indices: 18074925--18075121 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
18074915 ATACAATAAA
**
18074925 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCATGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
18074990 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
* *
18075023 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACTTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
18075088 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
18075121 A
1 A
18075122 TTATTTTTAA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:18076306 original size:19 final size:19
Alignment explanation
Indices: 18076279--18076358 Score: 106
Period size: 19 Copynumber: 4.1 Consensus size: 19
18076269 TCTTTTTTTT
*
18076279 TCATCTCTAAGATTGCATA
1 TCATATCTAAGATTGCATA
18076298 TCATATCTAAGATTGCATATA
1 TCATATCTAAGATTGC--ATA
**
18076319 TCATATCTTGGATTGCATA
1 TCATATCTAAGATTGCATA
*
18076338 TCATATCTAAGATTGTATA
1 TCATATCTAAGATTGCATA
18076357 TC
1 TC
18076359 CTCAAAAATT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
19 36 0.68
21 17 0.32
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (19 bp):
TCATATCTAAGATTGCATA
Found at i:18076674 original size:44 final size:45
Alignment explanation
Indices: 18076562--18077076 Score: 235
Period size: 44 Copynumber: 11.8 Consensus size: 45
18076552 GGAATTAGTG
* *
18076562 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
*
18076607 CTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTG-CTT
1 CTTCAGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
* *
18076651 CCTT-AGTCTGCTCCCCTGCAACTTCAGGGAGATAAGACTAG--A-
1 -CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * * *
18076693 -TGC-GATCTGCT-CTCTACAACTTCAGAGAGATAAGATCTGTG--AT
1 CTTCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCCAT
* * * * * ** **
18076736 -TTTAATCCGCTCTACTGCAACTTCAGGGAGATAGGA-TTATCGG
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * * *
18076779 CTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGATTTGCCAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* *
18076824 CTTCAGTCTGC-CTCACTGTAACTTCA-GGAGGATAAGACTTG-CTT
1 CTTCAGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
* * *
18076868 ACTT-AGTCTTG-TCCACCGCAACTTCAGGGAGATAAAACTAG--A-
1 -CTTCAGTC-TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * * * ** **
18076910 -TGC-GATCTGCT-CTCTGTAACTTTAGATAGATAAGA-TCTGTAAT
1 CTTCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCCAT
* ** * * * **
18076953 -TTTAACCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTGTCGG
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * * * *
18076996 CTTTAATCTGCTCCACTGCAACTTTAGGAAGATAAGATTTGCCAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * **
18077041 TTTC-GATCTGCTCCACTACTGCTT-AGGGAGATAAGA
1 CTTCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGA
18077077 TCTACAATCT
Statistics
Matches: 356, Mismatches: 80, Indels: 69
0.70 0.16 0.14
Matches are distributed among these distances:
39 1 0.00
40 45 0.13
41 12 0.03
42 4 0.01
43 14 0.04
44 177 0.50
45 103 0.29
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (45 bp):
CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
Found at i:18076910 original size:217 final size:217
Alignment explanation
Indices: 18076573--18077040 Score: 769
Period size: 217 Copynumber: 2.2 Consensus size: 217
18076563 TTCAATCTAC
*
18076573 TCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
* *
18076638 ATAAGACTTGCTTCCTTAGTCTGCTCCCCTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGC
66 ATAAGACTTGCTTACTTAGTCTGCTCCCCTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGC
* * *
18076703 TCTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGCAACTTCAGGGAGAT
131 TCTCTACAACTTCAGAGAGATAAGATCTGTAATTTTAACCCGCTCCACTGCAACTTCAGGGAGAT
18076768 AGGATTATCGGCTTTAATCTGA
196 AGGATTATCGGCTTTAATCTGA
*
18076790 TCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
18076855 ATAAGACTTGCTTACTTAGTCTTG-TCCACC-GCAACTTCAGGGAGATAAAACTAGATGCGATCT
66 ATAAGACTTGCTTACTTAGTC-TGCTCC-CCTGCAACTTCAGGGAGATAAAACTAGATGCGATCT
** * *
18076918 GCTCTCTGTAACTTTAGATAGATAAGATCTGTAATTTTAACCCGCTCCACTGCAACTTCAGGGAG
129 GCTCTCTACAACTTCAGAGAGATAAGATCTGTAATTTTAACCCGCTCCACTGCAACTTCAGGGAG
* *
18076983 ATAGGATTGTCGGCTTTAATCTGC
194 ATAGGATTATCGGCTTTAATCTGA
* *
18077007 TCCACTGCAACTTTAGGAAGATAAGATTTGCCAT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGCCAT
18077041 TTTCGATCTG
Statistics
Matches: 234, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
217 230 0.98
218 4 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (217 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
ATAAGACTTGCTTACTTAGTCTGCTCCCCTGCAACTTCAGGGAGATAAAACTAGATGCGATCTGC
TCTCTACAACTTCAGAGAGATAAGATCTGTAATTTTAACCCGCTCCACTGCAACTTCAGGGAGAT
AGGATTATCGGCTTTAATCTGA
Found at i:18077112 original size:132 final size:132
Alignment explanation
Indices: 18077024--18077749 Score: 1227
Period size: 132 Copynumber: 5.5 Consensus size: 132
18077014 CAACTTTAGG
* * *
18077024 AAGATAAGATTTGCCATTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
* *
18077089 AACCTACTCCGCTGCTGCTCAGGGAAACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
66 AACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
18077154 GA
131 GA
* *
18077156 AAGATAAGATTCGTCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTACAATCTTC
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
18077221 AACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
66 AACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
18077286 GA
131 GA
* * * * *
18077288 AATATAAGATTCGCCGTCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAAATCTACAATTTTT
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
* * * * *
18077353 AACCTTCTCCGCTACTGCTCAGGGAGACAAGACTTGGTGGCTTAACTATGCTTCCCATTATCTTG
66 AACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
18077418 GA
131 GA
*
18077420 AAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
*
18077485 AACCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
66 AACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
18077550 GA
131 GA
* * *
18077552 AAGATAAGATTCGCCGTCTTCGATTTGCTCCACTACTGTTTAGGGAAATAAGATCTACAATCTTC
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
*
18077617 AACCTTCTCCGCTGCTGCTCAGGGAGACGAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
66 AACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
18077682 GA
131 GA
* *
18077684 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTACAATTTTC
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
18077749 A
66 A
18077750 CTGATATGTT
Statistics
Matches: 554, Mismatches: 40, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 554 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTC
AACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
GA
Found at i:18078980 original size:13 final size:13
Alignment explanation
Indices: 18078954--18078986 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
18078944 CATTGGCCTC
18078954 TCCTTTTATTTTT
1 TCCTTTTATTTTT
18078967 T-CTTTTACTTTTT
1 TCCTTTTA-TTTTT
18078980 TCCTTTT
1 TCCTTTT
18078987 TCCTTTCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.33
13 7 0.39
14 5 0.28
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (13 bp):
TCCTTTTATTTTT
Found at i:18078986 original size:20 final size:19
Alignment explanation
Indices: 18078963--18079011 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
18078953 CTCCTTTTAT
*
18078963 TTTTTCTTTTACTTTTTTCC
1 TTTTTCTTTT-CCTTTTTCC
*
18078983 TTTTTCCTTTCCTTTTTCC
1 TTTTTCTTTTCCTTTTTCC
18079002 TCTTTT-TTTT
1 T-TTTTCTTTT
18079012 GAAATATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTCTTTTCCTTTTTCC
Found at i:18078993 original size:12 final size:12
Alignment explanation
Indices: 18078978--18079002 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18078968 CTTTTACTTT
18078978 TTTCCTTTTTCC
1 TTTCCTTTTTCC
18078990 TTTCCTTTTTCC
1 TTTCCTTTTTCC
18079002 T
1 T
18079003 CTTTTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTCCTTTTTCC
Found at i:18083271 original size:98 final size:98
Alignment explanation
Indices: 18083097--18083293 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
18083087 ATACAATAAA
*
18083097 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
18083162 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
*
18083195 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
18083260 CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
18083293 A
1 A
18083294 TTATTTTTAA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
Found at i:18083975 original size:22 final size:21
Alignment explanation
Indices: 18083926--18083968 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
18083916 TATATATATG
18083926 AAAATATTCATTTAAAAAAAT
1 AAAATATTCATTTAAAAAAAT
* *
18083947 AAAATATTCGTTTTAAAAAAT
1 AAAATATTCATTTAAAAAAAT
18083968 A
1 A
18083969 TATATATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (21 bp):
AAAATATTCATTTAAAAAAAT
Found at i:18084495 original size:19 final size:19
Alignment explanation
Indices: 18084468--18084547 Score: 106
Period size: 19 Copynumber: 4.1 Consensus size: 19
18084458 CTTTTTTTTT
*
18084468 TCATCTCTAAGATTGCATA
1 TCATATCTAAGATTGCATA
18084487 TCATATCTAAGATTGCATATA
1 TCATATCTAAGATTGC--ATA
**
18084508 TCATATCTTGGATTGCATA
1 TCATATCTAAGATTGCATA
*
18084527 TCATATTTAAGATTGCATA
1 TCATATCTAAGATTGCATA
18084546 TC
1 TC
18084548 CTCAAAAATT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
19 36 0.68
21 17 0.32
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (19 bp):
TCATATCTAAGATTGCATA
Found at i:18088849 original size:44 final size:44
Alignment explanation
Indices: 18088788--18088892 Score: 147
Period size: 44 Copynumber: 2.4 Consensus size: 44
18088778 TATTTTTGCG
* * *
18088788 TATATATATGTTTATAGTCTAATTTTTAATTTCTTGATATATTA
1 TATATACATATTTATAGTCTAATTTTTAATTTCTTAATATATTA
*
18088832 TATATACATATTTATAGTCTAATTTTTAGTTTCTTAATATATTA
1 TATATACATATTTATAGTCTAATTTTTAATTTCTTAATATATTA
* *
18088876 TACATGCATATTATATA
1 TATATACATATT-TATA
18088893 TTTTTTCGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
44 50 0.93
45 4 0.07
ACGTcount: A:0.34, C:0.07, G:0.06, T:0.53
Consensus pattern (44 bp):
TATATACATATTTATAGTCTAATTTTTAATTTCTTAATATATTA
Found at i:18092250 original size:2 final size:2
Alignment explanation
Indices: 18092243--18092305 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
18092233 TCACAACCAA
18092243 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
18092285 AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC A
18092306 TACAATTAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:18108905 original size:87 final size:87
Alignment explanation
Indices: 18108792--18109007 Score: 321
Period size: 87 Copynumber: 2.5 Consensus size: 87
18108782 TTGTCTTTTT
* *
18108792 TTTTTCATCATTAAATTTATAG-TTTTCAAGTTGGATAAGTGAAAAAAATGTTGTAGAAAA-CAT
1 TTTTTCATCATTAAACTTA-AGATTTTCAAGTTGGATAAGTGAAAAAAATGTTGTAGAAAATC-C
18108855 TCTTTTAAACTTATTTTCATCTTC
64 TCTTTTAAACTTATTTTCATCTTC
* * * *
18108879 TTTTTCCTCGTTAAACTTAAGATTTTCAAGTTGGATAAGCGAGAAAAATGTTGTAGAAAATCCTC
1 TTTTTCATCATTAAACTTAAGATTTTCAAGTTGGATAAGTGAAAAAAATGTTGTAGAAAATCCTC
18108944 TTTTAAACTTATTTTCATCTTC
66 TTTTAAACTTATTTTCATCTTC
*
18108966 TTTTTCATCATTAAACTTAA-AGTTTTCAAGTTGAATAAGTGA
1 TTTTTCATCATTAAACTTAAGA-TTTTCAAGTTGGATAAGTGA
18109008 TAATTTCAAA
Statistics
Matches: 116, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
86 3 0.03
87 112 0.97
88 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (87 bp):
TTTTTCATCATTAAACTTAAGATTTTCAAGTTGGATAAGTGAAAAAAATGTTGTAGAAAATCCTC
TTTTAAACTTATTTTCATCTTC
Found at i:18111635 original size:20 final size:18
Alignment explanation
Indices: 18111610--18111649 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
18111600 AAGTTTTTGG
18111610 TTTCCCATAAAGAAAATTAA
1 TTTCCCAT--AGAAAATTAA
*
18111630 TTTCCCATTGAAAATTAA
1 TTTCCCATAGAAAATTAA
18111648 TT
1 TT
18111650 AAAGTTATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
20 8 0.42
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (18 bp):
TTTCCCATAGAAAATTAA
Found at i:18115890 original size:22 final size:23
Alignment explanation
Indices: 18115862--18115904 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
18115852 TATATCGTAC
*
18115862 AATCATATCATG-TTACAAAATT
1 AATCATACCATGCTTACAAAATT
18115884 AATCATACCATGCTTACAAAA
1 AATCATACCATGCTTACAAAA
18115905 GCTTTTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.30
Consensus pattern (23 bp):
AATCATACCATGCTTACAAAATT
Found at i:18120052 original size:52 final size:52
Alignment explanation
Indices: 18119996--18120100 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
18119986 AATCTATTTA
18119996 ATAAACCTTGTATGATTAATCTGTTAAGTTTATGTGATAATGTATTTCTTTC
1 ATAAACCTTGTATGATTAATCTGTTAAGTTTATGTGATAATGTATTTCTTTC
18120048 ATAAACCTTGTATGATTAATCTGTTAAGTTTATGTGATAATGTATTTCTTTC
1 ATAAACCTTGTATGATTAATCTGTTAAGTTTATGTGATAATGTATTTCTTTC
18120100 A
1 A
18120101 ATCACTGATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.48
Consensus pattern (52 bp):
ATAAACCTTGTATGATTAATCTGTTAAGTTTATGTGATAATGTATTTCTTTC
Found at i:18121454 original size:14 final size:14
Alignment explanation
Indices: 18121435--18121486 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
18121425 ATGAGTATGT
18121435 TTTATTATTGTATA
1 TTTATTATTGTATA
* *
18121449 TTTATTATGAGTATGT
1 TTTATTAT-TGTAT-A
*
18121465 TTTATTATTGTAAA
1 TTTATTATTGTATA
18121479 TTTATTAT
1 TTTATTAT
18121487 GACAAAAAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
14 16 0.52
15 7 0.23
16 8 0.26
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.62
Consensus pattern (14 bp):
TTTATTATTGTATA
Found at i:18121459 original size:30 final size:30
Alignment explanation
Indices: 18121413--18121488 Score: 125
Period size: 30 Copynumber: 2.5 Consensus size: 30
18121403 AATAAACTTG
*
18121413 GTAAATTTACTCATGAGTATGTTTTATTATT
1 GTAAATTTA-TTATGAGTATGTTTTATTATT
*
18121444 GTATATTTATTATGAGTATGTTTTATTATT
1 GTAAATTTATTATGAGTATGTTTTATTATT
18121474 GTAAATTTATTATGA
1 GTAAATTTATTATGA
18121489 CAAAAAACTC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 34 0.81
31 8 0.19
ACGTcount: A:0.30, C:0.03, G:0.13, T:0.54
Consensus pattern (30 bp):
GTAAATTTATTATGAGTATGTTTTATTATT
Found at i:18121470 original size:16 final size:16
Alignment explanation
Indices: 18121425--18121472 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
18121415 AAATTTACTC
18121425 ATGAGTATGTTTTATT
1 ATGAGTATGTTTTATT
* *
18121441 AT-TGTAT-ATTTATT
1 ATGAGTATGTTTTATT
18121455 ATGAGTATGTTTTATT
1 ATGAGTATGTTTTATT
18121471 AT
1 AT
18121473 TGTAAATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 8 0.31
15 8 0.31
16 10 0.38
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (16 bp):
ATGAGTATGTTTTATT
Found at i:18123607 original size:18 final size:18
Alignment explanation
Indices: 18123586--18123620 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18123576 AATTGGATTG
18123586 AAAAATAATTTAATTAAA
1 AAAAATAATTTAATTAAA
*
18123604 AAAATTAATTTAATTAA
1 AAAAATAATTTAATTAA
18123621 TTAATTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAAATAATTTAATTAAA
Found at i:18125409 original size:5 final size:5
Alignment explanation
Indices: 18125401--18125427 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
18125391 AAAGGAAAGA
18125401 AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AA
18125428 GCAGATTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:18126905 original size:13 final size:12
Alignment explanation
Indices: 18126881--18126919 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
18126871 TCATGGATTA
18126881 TTGTTT-TTTAT
1 TTGTTTATTTAT
18126892 TTCGTTTATTTAT
1 TT-GTTTATTTAT
18126905 TTGTTTATATTAT
1 TTGTTTAT-TTAT
18126918 TT
1 TT
18126920 TCATGCCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.08
12 10 0.40
13 13 0.52
ACGTcount: A:0.15, C:0.03, G:0.08, T:0.74
Consensus pattern (12 bp):
TTGTTTATTTAT
Found at i:18126950 original size:15 final size:15
Alignment explanation
Indices: 18126927--18126959 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
18126917 TTTTCATGCC
18126927 ATTGATGTATTTATT
1 ATTGATGTATTTATT
*
18126942 ATTGTTGTATTTATT
1 ATTGATGTATTTATT
18126957 ATT
1 ATT
18126960 ATAGCATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (15 bp):
ATTGATGTATTTATT
Found at i:18129954 original size:41 final size:41
Alignment explanation
Indices: 18129908--18129996 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 41
18129898 AGTGGCGAGT
* *
18129908 AGAAATTTGAGAAGAAAAG-GACAGAGTCAATAAATGGGAAC
1 AGAAATTT-ACAAGAAAAGAGACACAGTCAATAAATGGGAAC
* * *
18129949 AGAAA-TTCCAAGAAATGCAGAGACAGTCAATAAATGGGAAC
1 AGAAATTTACAAGAAAAG-AGACACAGTCAATAAATGGGAAC
18129990 AGAAATT
1 AGAAATT
18129997 CTAAGAAATG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
39 7 0.17
40 2 0.05
41 30 0.75
42 1 0.03
ACGTcount: A:0.51, C:0.10, G:0.24, T:0.16
Consensus pattern (41 bp):
AGAAATTTACAAGAAAAGAGACACAGTCAATAAATGGGAAC
Found at i:18129965 original size:22 final size:22
Alignment explanation
Indices: 18129939--18130006 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
18129929 CAGAGTCAAT
18129939 AAATGGGAACAGAAATTCCAAG
1 AAATGGGAACAGAAATTCCAAG
* * * * *
18129961 AAAT--GCAGAGACAGT-CAAT
1 AAATGGGAACAGAAATTCCAAG
*
18129980 AAATGGGAACAGAAATTCTAAG
1 AAATGGGAACAGAAATTCCAAG
18130002 AAATG
1 AAATG
18130007 CAGAGACAAA
Statistics
Matches: 32, Mismatches: 11, Indels: 6
0.65 0.22 0.12
Matches are distributed among these distances:
19 7 0.22
20 7 0.22
21 7 0.22
22 11 0.34
ACGTcount: A:0.50, C:0.12, G:0.22, T:0.16
Consensus pattern (22 bp):
AAATGGGAACAGAAATTCCAAG
Found at i:18129997 original size:41 final size:41
Alignment explanation
Indices: 18129932--18130014 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
18129922 AAAAGGACAG
18129932 AGTCAATAAATGGGAACAGAAATTCCAAGAAATGCAGAGAC
1 AGTCAATAAATGGGAACAGAAATTCCAAGAAATGCAGAGAC
*
18129973 AGTCAATAAATGGGAACAGAAATTCTAAGAAATGCAGAGAC
1 AGTCAATAAATGGGAACAGAAATTCCAAGAAATGCAGAGAC
18130014 A
1 A
18130015 AAACGAGGCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.49, C:0.13, G:0.22, T:0.16
Consensus pattern (41 bp):
AGTCAATAAATGGGAACAGAAATTCCAAGAAATGCAGAGAC
Found at i:18130752 original size:24 final size:24
Alignment explanation
Indices: 18130725--18130770 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
18130715 AGAACAGTCC
* *
18130725 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
18130749 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
18130771 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:18139009 original size:45 final size:43
Alignment explanation
Indices: 18138914--18139023 Score: 114
Period size: 45 Copynumber: 2.5 Consensus size: 43
18138904 TCGCATCTAG
** *
18138914 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAAG
1 TCTTATCTCC-TGAAGTTGCAAAGGAGCAGACTAAGAAAGCAAA
**
18138958 TCTTATCCTCCTGAAGTTGCAAA-GAGGCAGACTGAAGATGGCAAA
1 TCTTAT-CTCCTGAAGTTGCAAAGGA-GCAGACT-AAGAAAGCAAA
*
18139003 TCTTATCTATCTGAAGTTGCA
1 TCTTATCT-CCTGAAGTTGCA
18139024 GTGAAGCAGG
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
43 2 0.04
44 25 0.45
45 29 0.52
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCTGAAGTTGCAAAGGAGCAGACTAAGAAAGCAAA
Found at i:18139236 original size:217 final size:215
Alignment explanation
Indices: 18139089--18140835 Score: 853
Period size: 217 Copynumber: 8.1 Consensus size: 215
18139079 TAAAACATTG
* * * * *
18139089 AATCTTATCACTCTGAAGTTGCAG-AGAGCAGAT-CG-CATCAAGTCTTATCCTCCAGAAGTTGC
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATAAGTAATCAAGTCTTATCCTCCTGAAGTTGC
*
18139151 AGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCG
66 AGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCG
*
18139216 ATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGT
131 ATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTA-ATCCTATCTCTCTGAAGT
* **
18139281 TTCAGAGAGCAGATCGCATCT
195 TGCAGAGAGCAGATAACATCT
* * *
18139302 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TAAGTAATCAAGTCTTATCCTCCTGAAGTTG
* *
18139367 CAGAAAGGCAGACTGAAGATGGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCC
65 CAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCC
* *
18139432 GATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAG
130 GATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT-AATCCTATCTCTCTGAAG
**
18139497 TTGCAGAGAGCAGATCGCATCT
194 TTGCAGAGAGCAGATAACATCT
* * *
18139519 AGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAGTAAGT-AAGTCTTATCCTCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAG-ATAAGTAA-TCAAGTCTTATCCTCCTGAAGTT
* * *
18139583 GCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGTAGTGGAG-TGGATTAAAA
64 GCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAAAG
* * * * * ** ** * *
18139647 CC-TTGGATCTTATC-TCTTTGAAGTTGCAG-AGAGCAGATT-GTA--TCAAGTCTTATC-CTCC
128 CCGAT-AATCCTATCTTC-CTGAAGTTGCAGTGGAGTGGATTAAAACCTTAA-TCCTATCTCT-C
* * **
18139705 TAAAGTTGCAGAGAGGCAGACTGAAGATGGAA
189 TGAAGTTGCAGAGA-GCAGA-T-AACAT--CT
* * * ** * *
18139737 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGCCGAT-AA-TCCTATCTTCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCA-GAT-AAG-TAATCAAGTCTTATCCTCCTGAAGT
* * * * * * * *
18139800 TACAGTGGAGTG--GATTAAAAACTTGG---ATCTTATCTCTCTAAAGTTGCAG-AGAGCA-G--
63 TGCAG-AGAG-GCAGACTGAAGA--TGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT
** *** * * * * ** * * *
18139856 ATCGCATCTAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAGTAAGC--AAGTCTTATC-
124 AAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAA--AACCTTAA-TCCTATCT
* * * * *
18139918 CTCCTAAAGTTACTGAGAGGCAGACTGAAGATGGCA
186 CT-CTGAAGTTGCAGAGA-GCAGA-T-AACAT--CT
* * * * * ** * *
18139954 AATCTTATCTCCTTGAAGTTGTAGTGGAACAGGTTAAAGCCGAT-AA-TCCTATCTTCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCA-GAT-AAG-TAATCAAGTCTTATCCTCCTGAAGT
* * * * *
18140017 TGCAGTGGAGTG--GA-TTAAAACCTTGG---ATCTTATCTCTCTGAAGTTGCAG-AGAGCA-G-
63 TGCAG-AGAG-GCAGACTGAAGA---TGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGT
** *** * * * * * * *
18140073 -ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGAAAGC--AAGTCTTATC
123 TAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGA-TTA-AAACCTTAA-TCCTATC
* * * *
18140135 -CTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCA
185 TCT-CTGAAGTTGCAGAGA-GCAGA-T-AACAT--CT
* * ** * * *
18140171 AATCTTATCTCCTTGAAGTTGCAGTGGAGTGGATTAA--AACCATGAATCTTAT-CT-TTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TAAGTAATCA--AGTCTTATCCTCCTGAAGT
* * * * * * *
18140232 TGCAGAGA-GCAGA-TCG--CAT--CAAGTCTTATC-CTCCTAAAGTTACAG-AGAGGCAGACTG
63 TGCAGAGAGGCAGACT-GAAGATGGCAAATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAG-GTT
* * * * *
18140289 AAGATGGC-A-AATCTTATC-TCCTTGAAGTTGCAGTGGAGCAGG-TTAAAGCCGATAATCCTAT
124 AA-A-GCCGATAATCCTATCTTCC-TGAAGTTGCAGTGGAG-TGGATTAAAACC-TTAATCCTAT
* * ** * *
18140350 CT-TCCTGAAGTTGTAGTGGAGTGGATTAAAACCTT
184 CTCT-CTGAAGTTGCAG-AGAGCAGA-TAACATC-T
* * * *
18140385 GGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGAT-CG-CATCTAA-TCTTAT-CTCCCTGAAGT
1 -AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATAAGTAATC-AAGTCTTATCCT-CCTGAAGT
* * * * *
18140445 TGCAGTG-GAGCAGACT-AAG-TAAGCAAGTCTTATC-CTCCTGAAGTTACAG-AGAGGCAGGTT
63 TGCAGAGAG-GCAGACTGAAGAT-GGCAAATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGGTT
* ** * *
18140505 AAAGTCGATAATCCTATCTTCCCAAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
124 AAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT-AATCCTATCTCT
* **
18140570 CTGAAGTTACAGAGAGCAGATCGCATCT
188 CTGAAGTTGCAGAGAGCAGATAACATCT
* * * * *
18140598 AGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-TAAGTAATCAAGTCTTATCCTCCTGAAGTTG
* *
18140663 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTAAAGCC
65 CAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCC
* * * * * *
18140728 AATAATCCTATCTTCTTGAAGTTGCAGTGGAGTGGATTAAAATCTTGGATCTTATCTTTCTGAAG
130 GATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTT-AATCCTATCTCTCTGAAG
* * **
18140793 TTACAGAGAACAGATCGCAT-T
194 TTGCAGAGAGCAGATAACATCT
18140814 AAGTCTTATC-CTCCTGAAGTTG
1 AA-TCTTATCTC-CCTGAAGTTG
18140836 TAGTGAGGCA
Statistics
Matches: 1259, Mismatches: 180, Indels: 186
0.77 0.11 0.11
Matches are distributed among these distances:
210 2 0.00
211 28 0.02
212 28 0.02
213 88 0.07
214 49 0.04
215 56 0.04
216 157 0.12
217 774 0.61
218 61 0.05
219 11 0.01
220 5 0.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (215 bp):
AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATAAGTAATCAAGTCTTATCCTCCTGAAGTTGC
AGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCG
ATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAATCCTATCTCTCTGAAGTT
GCAGAGAGCAGATAACATCT
Found at i:18139325 original size:84 final size:84
Alignment explanation
Indices: 18139050--18139330 Score: 239
Period size: 84 Copynumber: 3.3 Consensus size: 84
18139040 TCGATAATCC
* * *
18139050 TATCTTCCTGAAGTTGTAGTGGAGTGGATTAAAACATT-GAATCTTATCACTCTGAAGTTGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACATTAG-ATCTTATCTCTCTGAAGTTGCAGA
*
18139114 GAGCAGATCGCATCAAGTCT
65 GAGCAGATCGCATCTAGTCT
* * * * * * *
18139134 TATC-CTCCAGAAGTTGCAGT-GAG-GCAGACT-GAAGATGGCAAATCTTATCTCCCTGAAGTTG
1 TATCTC-CCTGAAGTTGCAGTGGAGTG--GATTAAAACAT--TAGATCTTATCTCTCTGAAGTTG
* ** *** * *
18139195 CAGTGGAGCAGGTTAAAGCCGATAATCC
61 CAG-AGAGCA-G--ATCGCATCTAGTCT
* * *
18139223 TATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTTCAGAG
1 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACATTAGATCTTATCTCTCTGAAGTTGCAGAG
18139288 AGCAGATCGCATCTAGTCT
66 AGCAGATCGCATCTAGTCT
18139307 TATCTCCCTGAAGTTGCAGTGGAG
1 TATCTCCCTGAAGTTGCAGTGGAG
18139331 CAGACTAAGT
Statistics
Matches: 145, Mismatches: 38, Indels: 28
0.69 0.18 0.13
Matches are distributed among these distances:
82 1 0.01
83 7 0.05
84 49 0.34
85 21 0.14
86 6 0.04
87 6 0.04
88 22 0.15
89 26 0.18
90 6 0.04
91 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (84 bp):
TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACATTAGATCTTATCTCTCTGAAGTTGCAGAG
AGCAGATCGCATCTAGTCT
Found at i:18139325 original size:173 final size:173
Alignment explanation
Indices: 18138954--18139369 Score: 619
Period size: 173 Copynumber: 2.4 Consensus size: 173
18138944 ACTAAGAAAG
** **
18138954 CAAGTCTTATCCTCCTGAAGTTGCAAAGAGGCAGACTGAAGATGGCAAATCTTATCTATCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
* *
18139019 TTGCAGTGAAGCAGGTTAAAGTCGATAATCCTATCTTCCTGAAGTTGTAGTGGAGTGGATTAAAA
66 TTGCAGTGAAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
18139084 CATTGAATCTTATCACTCTGAAGTTGCAGAGAGCAGATCGCAT
131 CATTGAATCTTATCACTCTGAAGTTGCAGAGAGCAGATCGCAT
*
18139127 CAAGTCTTATCCTCCAGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
*
18139192 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
66 TTGCAGTGAAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
* * *
18139257 CCTT-AGATCTTATCTCTCTGAAGTTTCAGAGAGCAGATCGCAT
131 CATTGA-ATCTTATCACTCTGAAGTTGCAGAGAGCAGATCGCAT
* * *
18139300 CTAGTCTTAT-CTCCCTGAAGTTGCAGTG-GAGCAGACT-AAG-TAAGCAAGTCTTATC-CTCCT
1 CAAGTCTTATCCT-CCTGAAGTTGCAGTGAG-GCAGACTGAAGAT-GGCAAATCTTATCTC-CCT
18139360 GAAGTTGCAG
62 GAAGTTGCAG
18139370 AAAGGCAGAC
Statistics
Matches: 223, Mismatches: 15, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
171 2 0.01
172 31 0.14
173 190 0.85
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (173 bp):
CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
TTGCAGTGAAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
CATTGAATCTTATCACTCTGAAGTTGCAGAGAGCAGATCGCAT
Found at i:18139408 original size:173 final size:173
Alignment explanation
Indices: 18138954--18139419 Score: 540
Period size: 173 Copynumber: 2.7 Consensus size: 173
18138944 ACTAAGAAAG
* ** * **
18138954 CAAGTCTTATCCTCCTGAAGTTGCAAAGAGGCAGACTGAAGATGGCAAATCTTATCTATCTGAAG
1 CAAGTCTTATCCTCCAGAAGTTGCAGTGAGGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAG
* * * * *
18139019 TTGCAG-TGAAGCAGGTTAAAGTCGATAATCCTATCTTCCTGAAGTTGTAGTGGAGTGGATTAAA
66 TTGCAGAAG-AGCAGCTGAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAA
18139083 ACATTGAATCTTATCACTCTGAAGTTGCAGAGAGCAGATCGCAT
130 ACATTGAATCTTATCACTCTGAAGTTGCAGAGAGCAGATCGCAT
*
18139127 CAAGTCTTATCCTCCAGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCAGAAGTTGCAGTGAGGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAG
** * *
18139192 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
66 TTGCAGAAGAGCAGCTGAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
* * *
18139257 CCTT-AGATCTTATCTCTCTGAAGTTTCAGAGAGCAGATCGCAT
131 CATTGA-ATCTTATCACTCTGAAGTTGCAGAGAGCAGATCGCAT
* * *
18139300 CTAGTCTTAT-CTCCCTGAAGTTGCAGTG-GAGCAGACT-AAG-TAAGCAAGTCTTATC-CTCCT
1 CAAGTCTTATCCT-CCAGAAGTTGCAGTGAG-GCAGACTGAAGAT-AGCAAATCTTATCTC-CCT
* *
18139360 GAAGTTGCAGAA-AGGCAGACTGAAGATGGC-A-AATCTTAT-TTCCCTGAAGTTGCAGTGGAG
62 GAAGTTGCAGAAGA-GCAG-CTGAA-A-GCCGATAATCCTATCTT-CCTGAAGTTGCAGTGGAG
18139420 CAGGTTAAAG
Statistics
Matches: 261, Mismatches: 21, Indels: 22
0.86 0.07 0.07
Matches are distributed among these distances:
171 3 0.01
172 37 0.14
173 216 0.83
174 3 0.01
175 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (173 bp):
CAAGTCTTATCCTCCAGAAGTTGCAGTGAGGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAG
TTGCAGAAGAGCAGCTGAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
CATTGAATCTTATCACTCTGAAGTTGCAGAGAGCAGATCGCAT
Found at i:18139615 original size:346 final size:345
Alignment explanation
Indices: 18139304--18140021 Score: 1087
Period size: 346 Copynumber: 2.1 Consensus size: 345
18139294 TCGCATCTAG
* *
18139304 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAG-AGAGCAGA-T-AGT-AGCAAGTCTTATCCTCCTAAAGTTGCA
* *
18139369 GAAAGGCAGACTGAAGATGGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGA
62 GAAAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGA
* * *
18139434 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTT
127 TAATCCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAAACTTGGATCTTATCTCTCTAAAGTT
* *
18139499 GCAGAGAGCAGATCGCATCTAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAGTAAGTAA
192 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAGTAAGCAA
* *
18139564 GTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
257 GTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCT-CCTGAAGTTG
* ** *
18139629 TAGTGGAGTGGATTAAAACCTTGGA
321 TAGTAGAGCAGATTAAAACCTTAGA
** * * *
18139654 TCTTATCTCTTTGAAGTTGCAGAGAGCAGATTGTATCAAGTCTTATCCTCCTAAAGTTGCAGAGA
1 TCTTATCTCCCTGAAGTTGCAGAGAGCAGATAGTAGCAAGTCTTATCCTCCTAAAGTTGCAGAAA
*
18139719 GGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGCCGATAAT
66 GGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAAT
18139784 CCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAAACTTGGATCTTATCTCTCTAAAGTTGCAG
131 CCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAAACTTGGATCTTATCTCTCTAAAGTTGCAG
* *
18139849 AGAGCAGATCGCATCTAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
196 AGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAGTAAGCAAGTCT
*
18139914 TATCCTCCTAAAGTTACTGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAGTTGTAGT
261 TATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCC-TGAAGTTGTAGT
* * * * *
18139979 GGAACAGGTTAAAGCCGATA-A
325 AGAGCAGATTAAAACC-TTAGA
* *
18140000 TCCTATCTTCCTGAAGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAG
18140022 TGGAGTGGAT
Statistics
Matches: 335, Mismatches: 31, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
345 2 0.01
346 302 0.90
347 3 0.01
348 1 0.00
349 7 0.02
350 20 0.06
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (345 bp):
TCTTATCTCCCTGAAGTTGCAGAGAGCAGATAGTAGCAAGTCTTATCCTCCTAAAGTTGCAGAAA
GGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAAT
CCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAAACTTGGATCTTATCTCTCTAAAGTTGCAG
AGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAGTAAGCAAGTCT
TATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTGAAGTTGTAGTA
GAGCAGATTAAAACCTTAGA
Found at i:18139625 original size:390 final size:390
Alignment explanation
Indices: 18138822--18140236 Score: 1607
Period size: 390 Copynumber: 3.6 Consensus size: 390
18138812 GAACAGATCA
* * *
18138822 AAAGCCAATGATCCTATCTCCCTGAAGTTGCAGTAGAGTGGATTAAAA---TGGATCTTATCTCT
1 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
* *
18138884 CTGAAGTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAA
66 CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
**
18138949 GAAAGCAAGTCTTATCCTCCTGAAGTTGCA-AAGAGGCAGACTGAAGATGGCAAATCTTATCTAT
131 GAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAA-AGGCAGACTGAAGATGGCAAATCTTATCTCC
* * * *
18139013 CTGAAGTTGCAGTGAAGCAGG-TTAAAGTCGAT-AATCCTATCTTCCTGAAGTTGTAGTGGAGTG
195 CTGAAGTTGCAGTGGAG-AGGATTAAA-ACCATGAATCCTATCTTCCTGAAGTTGCAGTGGAGTG
* * *
18139076 GATTAAAACATTGAATCTTATCACTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTC
258 GATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTC
*
18139141 CAGAAGTTGCAGT-GAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
323 CTGAAGTTGCAGTGGAGGCAGACTGAAGATGGCAAATCTTATCT-CCTGAAGTTGCAGTGGAGCA
18139205 GGTT
387 GGTT
* *
18139209 AAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCT
1 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
*
18139274 CTGAAGTTTCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
66 CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
* *
18139339 GTAAGCAAGTCTTATCCTCCTGAAGTTGCAGAAAGGCAGACTGAAGATGGCAAATCTTATTTCCC
131 GAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAAAGGCAGACTGAAGATGGCAAATCTTATCTCCC
*
18139404 TGAAGTTGCAGTGGAGCAGG-TTAAAGCCGAT-AATCCTATCTTCCTGAAGTTGCAGTGGAGTGG
196 TGAAGTTGCAGTGGAG-AGGATTAAAACC-ATGAATCCTATCTTCCTGAAGTTGCAGTGGAGTGG
* *
18139467 ATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTTTTAT-CTCC
259 ATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCT-C
* * * * *
18139531 CTGAAGTTGCAGTGGA-GCAGAAT-AAG-TAAGTAAGTCTTATCCTCCTGAAGTTGCAG-AGAGG
323 CTGAAGTTGCAGTGGAGGCAGACTGAAGAT-GGCAAATCTTAT-CTCCTGAAGTTGCAGTGGA-G
* *
18139592 CAGACTG
385 CAG-GTT
* * *
18139599 AAGATGGC-A-AATCTTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACCTTGGATCTTATCT
1 AA-A-GCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCT
* * * * * *
18139662 CTTTGAAGTTGCAGAGAGCAGATTGTATCAAGTCTTATC-CTCCTAAAGTTGCAG-AGAGGCAGA
64 CTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA
** * * * ** * * *
18139725 CTGAAGATGGAAAATCTTAT-CTCCCTGAAGTTGTAG-TGGAGCAG-GTTAA-A-GCCGATAATC
127 CT-AAGAAAGCAAGTCTTATCCT-CCTGAAGTTGCAGAAAG-GCAGACTGAAGATGGC-A-AATC
* * * * * * * * *
18139785 CTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAAACTTGGATCTTATC-TCTCTAAAGTTGCAG
187 TTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAACCATGAATCCTATCTTC-CTGAAGTTGCAG
* ** *** * * * * * * * *
18139849 -AGAGCAGA-TCGCATC-TAG-TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAGTAAGCAA
251 TGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCAA
* *
18139910 GTCTTATCCTCCTAAAGTT--ACTGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAGT
312 GTCTTATCCTCCTGAAGTTGCAGTG-GAGGCAGACTGAAGATGGCAAATCTTATCTCC-TGAAGT
* *
18139973 TGTAGTGGAACAGGTT
375 TGCAGTGGAGCAGGTT
*
18139989 AAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
1 AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
*
18140054 CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAA
66 CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
* * * *
18140119 GAAAGCAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCT
131 GAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAAAGGCAGACTGAAGATGGCAAATCTTATCTCCC
* *
18140184 TGAAGTTGCAGTGGAGTGGATTAAAACCATGAATCTTATCTT--TGAAGTTGCAG
196 TGAAGTTGCAGTGGAGAGGATTAAAACCATGAATCCTATCTTCCTGAAGTTGCAG
18140237 AGAGCAGATC
Statistics
Matches: 863, Mismatches: 121, Indels: 87
0.81 0.11 0.08
Matches are distributed among these distances:
386 20 0.02
387 53 0.06
388 24 0.03
389 79 0.09
390 613 0.71
391 67 0.08
392 7 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (390 bp):
AAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
CTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
GAAAGCAAGTCTTATCCTCCTGAAGTTGCAGAAAGGCAGACTGAAGATGGCAAATCTTATCTCCC
TGAAGTTGCAGTGGAGAGGATTAAAACCATGAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGAT
TAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTG
AAGTTGCAGTGGAGGCAGACTGAAGATGGCAAATCTTATCTCCTGAAGTTGCAGTGGAGCAGGTT
Found at i:18139798 original size:129 final size:129
Alignment explanation
Indices: 18139562--18139800 Score: 358
Period size: 129 Copynumber: 1.9 Consensus size: 129
18139552 ATAAGTAAGT
* *
18139562 AAGTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
1 AAGTCTTATCCTCCTAAAGTTGCAGAGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGT
* * * * *
18139627 TGTAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTTTGAAGTTGCAGAGAGCAGATTGTATC
66 TGTAGTGGAGAGGATTAAAACCATGAATCCTATCTCTCTGAAGTTGCAGAGAGCAGATTGTATC
18139691 AAGTCTTATCCTCCTAAAGTTGCAGAGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGT
1 AAGTCTTATCCTCCTAAAGTTGCAGAGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGT
*
18139756 TGTAGTGGAGCAGG-TTAAAGCCGAT-AATCCTATCT-TCCTGAAGTT
66 TGTAGTGGAG-AGGATTAAAACC-ATGAATCCTATCTCT-CTGAAGTT
18139801 ACAGTGGAGT
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
128 1 0.01
129 95 0.96
130 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (129 bp):
AAGTCTTATCCTCCTAAAGTTGCAGAGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGT
TGTAGTGGAGAGGATTAAAACCATGAATCCTATCTCTCTGAAGTTGCAGAGAGCAGATTGTATC
Found at i:18139899 original size:173 final size:173
Alignment explanation
Indices: 18139346--18139899 Score: 705
Period size: 173 Copynumber: 3.2 Consensus size: 173
18139336 TAAGTAAGCA
** * *
18139346 AGTCTTATC-CTCCTGAAGTTGCAG-AAAGGCAGACTGAAGATGGCAAATCTTATTTCCCTGAAG
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGATGGAAAATCTTATCTCCCTGAAG
18139409 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
64 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
18139474 CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
129 CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* * * * *
18139519 AGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGAAT-AAG-TAAGTAAGTCTTATC-CTCCTGAAG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-GGAAAATCTTATCTC-CCTGAAG
* * * * * * *
18139581 TTGCAG-AGAGGCAGACTGAAGATGGC-A-AATCTTATCTCCCTGAAGTTGTAGTGGAGTGGATT
64 TTGCAGTGGA-GCAG-GTTAA-A-GCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATT
* * * *
18139643 AAAACCTTGGATCTTATCTCTTTGAAGTTGCAGAGAGCAGATTGTATCA
125 AAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* *
18139692 AGTCTTATC-CTCCTAAAGTTGCAG-AGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAG
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGATGGAAAATCTTATCTCCCTGAAG
* *
18139755 TTGTAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAA
64 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
* *
18139820 ACTTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCT
129 CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
*
18139865 AGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT
18139900 AAGTAAGCAA
Statistics
Matches: 319, Mismatches: 44, Indels: 36
0.80 0.11 0.09
Matches are distributed among these distances:
171 6 0.02
172 34 0.11
173 237 0.74
174 36 0.11
175 6 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (173 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACC
TTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
Found at i:18139950 original size:563 final size:562
Alignment explanation
Indices: 18139045--18141017 Score: 2775
Period size: 563 Copynumber: 3.5 Consensus size: 562
18139035 TAAAGTCGAT
* * * * *
18139045 AATCCTATCTTCCTGAAGTTGTAGTGGAGTGGATTAAAACATTGAATCTTATCACTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTCTTTGAAGTTG
*
18139110 CAGAGAGCAGATCGCATCAAGTCTTATCCTCC-AGAAGTTGCAGTGAGGCAGACTGAAGATGGCA
66 CAGAGAGCAGATCGCATCAAGTCTTATCCTCCTA-AAGTTGCAGAGAGGCAGACTGAAGATGGCA
*
18139174 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTG
130 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTA
* *
18139239 CAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTTCAGAGAGCAGATCGCATCTAG
195 CAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAG
*
18139304 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCA
260 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACA
*
18139369 GAAAGGCAGACTGAAGATGGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGA
325 GAGAGGCAGACTGAAGATGGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGA
18139434 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTT
390 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTT
* * *
18139499 GCAGAGAGCAGATCGCATCTAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAGTAAGTAA
455 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAA
18139564 GTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCA
519 GTCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCA
* * *
18139608 AATCTTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTTTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTCTTTGAAGTTG
* * *
18139673 CAGAGAGCAGATTGTATCAAGTCTTATCCTCCTAAAGTTGCAGAGAGGCAGACTGAAGATGGAAA
66 CAGAGAGCAGATCGCATCAAGTCTTATCCTCCTAAAGTTGCAGAGAGGCAGACTGAAGATGGCAA
*
18139738 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTAC
131 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTAC
* *
18139803 AGTGGAGTGGATTAAAAACTTGGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCTAGT
196 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGT
* * *
18139868 CTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTAAAGTTACTG
261 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAG
* * * *
18139933 AGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAGTTGTAGTGGAACAGGTTAAAGCCGAT
326 AGAGGCAGACTGAAGATGGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGAT
18139998 AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTG
391 AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTG
*
18140063 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGAAAGCAAG
456 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAG
* *
18140128 TCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCA
520 TCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCA
* * *
18140171 AATCTTATCTCCTTGAAGTTGCAGTGGAGTGGATTAAAACCATGAATCTTA--TCTTTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTCTTTGAAGTTG
*
18140234 CAGAGAGCAGATCGCATCAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAA
66 CAGAGAGCAGATCGCATCAAGTCTTATCCTCCTAAAGTTGCAGAGAGGCAGACTGAAGATGGCAA
* **
18140299 ATCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGT
131 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTAC
*
18140364 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAAT
196 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGT
18140429 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAG
261 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAG
** * * * * * *
18140494 AGAGGCAGGTTAAAG-TCG-ATAATCCTATCTTCCC-AAAGTTGCAGTGGAG-TGGATTAAAACC
326 AGAGGCAGACTGAAGATGGCA-AATCTTAT-TTCCCTGAAGTTGCAGTGGAGCAGG-TTAAAGCC
* * * * * ** *** * * * *
18140555 -TTGGATCTTATC-TCTCTGAAGTTACAG-AGAGCAGA-TCGCATC-TAG-TCTTATCTCCCTAA
388 GAT-AATCCTATCTTC-CTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGA
* * * * * *
18140614 AGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC-CTCCTAAAGTTGCAGT-GAGGCAGACT
451 AGTTGCAG-AGAGCAGA-T-CG-CATCTAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT
* * * * * *
18140677 GAAGATGGCAAATCTTAT-CTCTCTGAAGTTGCAGTG-GAGCAG-GTTAA-A-GCCAA
510 -AAGA-AGCAAGTCTTATCCTC-CTGAAGTTGCAGAGAG-GCAGACTGAAGATGGC-A
* * * *
18140730 TAATCCTATCTTCTTGAAGTTGCAGTGGAGTGGATTAAAATCTTGGATCTTATCT-TTCTGAAGT
1 -AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTCTT-TGAAGT
* * * * * *
18140794 TACAGAGAACAGATCGCATTAAGTCTTATCCTCCTGAAGTTGTAGTGAGGCAGACTGAAGATGGC
64 TGCAGAGAGCAGATCGCATCAAGTCTTATCCTCCTAAAGTTGCAGAGAGGCAGACTGAAGATGGC
* * *
18140859 AAATCTTATCTCCCTGAAGTAGTAGTGGAGCAGGTTAAAGCCGATAATCCTATC-TCTCTAAAGT
129 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTC-CTGAAGT
* *
18140923 TACAGTGGAGCGGATTAAAACCTTGGATCTTATCTATCTGAAGTTGCAGAGAGCAGATCGCATCT
193 TACAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
*
18140988 AGTCTTATCTCCCTGAAGTTGCAATGGAGC
258 AGTCTTATCTCCCTGAAGTTGCAGTGGAGC
18141018 GGATTAGAAC
Statistics
Matches: 1275, Mismatches: 113, Indels: 45
0.89 0.08 0.03
Matches are distributed among these distances:
556 20 0.02
557 9 0.01
558 6 0.00
559 17 0.01
560 130 0.10
561 305 0.24
562 211 0.17
563 576 0.45
564 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (562 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGAATCTTATCTCTTTGAAGTTG
CAGAGAGCAGATCGCATCAAGTCTTATCCTCCTAAAGTTGCAGAGAGGCAGACTGAAGATGGCAA
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTAC
AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGT
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAG
AGAGGCAGACTGAAGATGGCAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGAT
AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTG
CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGT
CTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCA
Found at i:18139973 original size:173 final size:173
Alignment explanation
Indices: 18139435--18139981 Score: 682
Period size: 173 Copynumber: 3.2 Consensus size: 173
18139425 TAAAGCCGAT
18139435 AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTG
* * *
18139500 CAGAGAGCAGATCGCATCTAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAGTAAGTAAG
66 CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGAAAG
* *
18139565 TCTTATCCTCCTGAAGTTGCAGAGAGGCAGACTGAAGATGGCA
131 TCTTATCCTCCTGAAGTTACTGAGAGGCAGACTGAAGATGGCA
* * * *
18139608 AATCTTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTTTGAAGTTG
1 AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTG
* * * * * *
18139673 CAGAGAGCAGATTGTATCAAGTCTTATC-CTCCTAAAGTTGCAG-AGAGGCAGACTGAAG-ATGG
66 CAGAGAGCAGATCGCATCTAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AG
* * * * *
18139735 AAAATCTTAT-CTCCCTGAAGTTGTAGTG-GA-GCAG-GTTAA-A-GCCGA
127 AAAGTCTTATCCT-CCTGAAG-T-TACTGAGAGGCAGACTGAAGATGGC-A
* * *
18139780 TAATCCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAAACTTGGATCTTATCTCTCTAAAGTT
1 -AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTT
* *
18139845 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAGTAAGCAA
65 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGAAA
*
18139910 GTCTTATCCTCCTAAAGTTACTGAGAGGCAGACTGAAGATGGCA
130 GTCTTATCCTCCTGAAGTTACTGAGAGGCAGACTGAAGATGGCA
* *
18139954 AATCTTATC-TCCTTGAAGTTGTAGTGGA
1 AATCCTATCTTCC-TGAAGTTGCAGTGGA
18139982 ACAGGTTAAA
Statistics
Matches: 311, Mismatches: 44, Indels: 38
0.79 0.11 0.10
Matches are distributed among these distances:
170 4 0.01
171 5 0.02
172 30 0.10
173 237 0.76
174 28 0.09
175 5 0.02
176 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (173 bp):
AATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTG
CAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGAAAG
TCTTATCCTCCTGAAGTTACTGAGAGGCAGACTGAAGATGGCA
Found at i:18140311 original size:344 final size:345
Alignment explanation
Indices: 18139907--18140667 Score: 1180
Period size: 344 Copynumber: 2.2 Consensus size: 345
18139897 ACTAAGTAAG
*
18139907 CAAGTCTTATCCTCCTAAAGTTACTGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
1 CAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
*
18139972 TTGTAGTGGAACAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
66 TTGCAGTGGAACAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
*
18140037 CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTT
131 CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTGAAGTT
* *
18140102 GCAGTGGAGTAGACTAAGAAAGCAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGAT
196 GCAGTGGAGCAGACTAAGAAAGCAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTAAAG-T
* * **
18140167 GGCA-AATCTTATC-TCCTTGAAGTTGCAGTGGAGTGGATTAAAACCATGAATCTTATCT-T-TG
260 CG-ATAATCCTATCTTCC-CAAAGTTGCAGTGGAGTGGATTAAAACCATGAATCTTATCTCTCTG
*
18140228 AAGTTGCAGAGAGCAGATCGCAT
323 AAGTTACAGAGAGCAGATCGCAT
18140251 CAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
1 CAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
* *
18140316 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGTAGTGGAGTGGATTAAAA
66 TTGCAGTGGAACAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
18140381 CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTGAAGTT
131 CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTGAAGTT
* * **
18140446 GCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGAGAGGCAGGTTAAAGTC
196 GCAGTGGAGCAGACTAAGAAAGCAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTAAAGTC
* *
18140511 GATAATCCTATCTTCCCAAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAG
261 GATAATCCTATCTTCCCAAAGTTGCAGTGGAGTGGATTAAAACCATGAATCTTATCTCTCTGAAG
18140576 TTACAGAGAGCAGATCGCAT
326 TTACAGAGAGCAGATCGCAT
* * * * *
18140596 CTAGTCTTAT-CTCCCTAAAGTTGCAGTG-GAGCAGACT-AAG-TAAGCAAGTCTTATCCTCC-T
1 CAAGTCTTATCCT-CCTAAAGTTACAGAGAG-GCAGACTGAAGAT-GGCAAATCTTAT-CTCCTT
*
18140656 AAAGTTGCAGTG
62 GAAGTTGCAGTG
18140668 AGGCAGACTG
Statistics
Matches: 385, Mismatches: 24, Indels: 16
0.91 0.06 0.04
Matches are distributed among these distances:
342 1 0.00
343 48 0.12
344 279 0.72
345 57 0.15
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (345 bp):
CAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
TTGCAGTGGAACAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGACTAAGAAAGCAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTAAAGTC
GATAATCCTATCTTCCCAAAGTTGCAGTGGAGTGGATTAAAACCATGAATCTTATCTCTCTGAAG
TTACAGAGAGCAGATCGCAT
Found at i:18140351 original size:127 final size:128
Alignment explanation
Indices: 18140124--18140362 Score: 403
Period size: 127 Copynumber: 1.9 Consensus size: 128
18140114 ACTAAGAAAG
18140124 CAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
1 CAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
* *
18140189 TTGCAGTGGAGTGGATTAAAACCATGAATCTTATCTT-TGAAGTTGCAGAGAGCAGATCGCAT
66 TTGCAGTGGAGAGGATTAAAACCATGAATCCTATCTTCTGAAGTTGCAGAGAGCAGATCGCAT
18140251 CAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
1 CAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
*
18140316 TTGCAGTGGAGCAGG-TTAAAGCCGAT-AATCCTATCTTCCTGAAGTTG
66 TTGCAGTGGAG-AGGATTAAAACC-ATGAATCCTATCTT-CTGAAGTTG
18140363 TAGTGGAGTG
Statistics
Matches: 105, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
127 93 0.89
128 4 0.04
129 8 0.08
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (128 bp):
CAAGTCTTATCCTCCTAAAGTTACAGAGAGGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAG
TTGCAGTGGAGAGGATTAAAACCATGAATCCTATCTTCTGAAGTTGCAGAGAGCAGATCGCAT
Done.