Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 79 of 189
Found at i:22063989 original size:21 final size:20
Alignment explanation
Indices: 22063944--22063986 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
22063934 CACCAATGAA
22063944 TTAA-AAAATATTAATTTTT
1 TTAATAAAATATTAATTTTT
22063963 TTAATAAAATATT-ATTATTT
1 TTAATAAAATATTAATT-TTT
22063983 TTAA
1 TTAA
22063987 ATATTTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAATAAAATATTAATTTTT
Found at i:22064466 original size:21 final size:22
Alignment explanation
Indices: 22064439--22064487 Score: 91
Period size: 21 Copynumber: 2.3 Consensus size: 22
22064429 TTTGGATTAG
22064439 TATTTTGTATGAATATTGTAAT
1 TATTTTGTATGAATATTGTAAT
22064461 T-TTTTGTATGAATATTGTAAT
1 TATTTTGTATGAATATTGTAAT
22064482 TATTTT
1 TATTTT
22064488 ATAATTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (22 bp):
TATTTTGTATGAATATTGTAAT
Found at i:22064517 original size:33 final size:33
Alignment explanation
Indices: 22064480--22064575 Score: 100
Period size: 33 Copynumber: 3.1 Consensus size: 33
22064470 GAATATTGTA
22064480 ATTATTTTATAATTAATTTGTTAGTAATTTAGG
1 ATTATTTTATAATTAATTTGTTAGTAATTTAGG
*
22064513 ATTATGTTATAA--AATTTG-T-GT--TTGTA--
1 ATTATTTTATAATTAATTTGTTAGTAATT-TAGG
* *
22064539 ATTATTTTAAAATTAATTTATTAGTAATTTAGG
1 ATTATTTTATAATTAATTTGTTAGTAATTTAGG
22064572 ATTA
1 ATTA
22064576 AGTTATAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 18
0.69 0.06 0.25
Matches are distributed among these distances:
26 10 0.20
27 2 0.04
28 7 0.14
29 3 0.06
30 3 0.06
31 8 0.16
32 2 0.04
33 15 0.30
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.53
Consensus pattern (33 bp):
ATTATTTTATAATTAATTTGTTAGTAATTTAGG
Found at i:22064544 original size:59 final size:60
Alignment explanation
Indices: 22064475--22064595 Score: 199
Period size: 59 Copynumber: 2.0 Consensus size: 60
22064465 TGTATGAATA
* * *
22064475 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAAAT-TTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAAATGTTGTGT
*
22064534 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAAATGTTGTGT
22064594 TT
1 TT
22064596 AGTTTAGTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
59 49 0.86
60 8 0.14
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (60 bp):
TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAAATGTTGTGT
Found at i:22064730 original size:16 final size:16
Alignment explanation
Indices: 22064709--22064746 Score: 69
Period size: 15 Copynumber: 2.4 Consensus size: 16
22064699 TTAACTCATT
22064709 TAATTTTTATATAATG
1 TAATTTTTATATAATG
22064725 TAA-TTTTATATAATG
1 TAATTTTTATATAATG
22064740 TAATTTT
1 TAATTTT
22064747 ATTTGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (16 bp):
TAATTTTTATATAATG
Found at i:22064733 original size:15 final size:15
Alignment explanation
Indices: 22064713--22064748 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
22064703 CTCATTTAAT
22064713 TTTTATATAATGTAA
1 TTTTATATAATGTAA
22064728 TTTTATATAATGTAA
1 TTTTATATAATGTAA
22064743 TTTTAT
1 TTTTAT
22064749 TTGATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (15 bp):
TTTTATATAATGTAA
Found at i:22066321 original size:6 final size:6
Alignment explanation
Indices: 22066301--22066349 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
22066291 CCAAATCCAA
* * * * *
22066301 AGCCAG AACCAG AGCCGG AGCCAG AGCTAG AGCCGG AGCCAG AGGCAG
1 AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG
22066349 A
1 A
22066350 AACGAAACTA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.33, C:0.29, G:0.37, T:0.02
Consensus pattern (6 bp):
AGCCAG
Found at i:22066344 original size:18 final size:18
Alignment explanation
Indices: 22066301--22066349 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
22066291 CCAAATCCAA
*
22066301 AGCCAGAACCAGAGCCGG
1 AGCCAGAGCCAGAGCCGG
*
22066319 AGCCAGAGCTAGAGCCGG
1 AGCCAGAGCCAGAGCCGG
*
22066337 AGCCAGAGGCAGA
1 AGCCAGAGCCAGA
22066350 AACGAAACTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.33, C:0.29, G:0.37, T:0.02
Consensus pattern (18 bp):
AGCCAGAGCCAGAGCCGG
Found at i:22069943 original size:27 final size:27
Alignment explanation
Indices: 22069877--22069959 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 27
22069867 GAAAAATAAG
* *
22069877 ACCATTGGCGCCTCTCAACATA-GCACA
1 ACCATTGGCGCCTCTC-AGATAGGCACC
* * * *
22069904 ACTAATGGTGCCTGTCAGATAGGCACC
1 ACCATTGGCGCCTCTCAGATAGGCACC
* *
22069931 ACCATTGGCGCCTCTGAGATAGGCGCC
1 ACCATTGGCGCCTCTCAGATAGGCACC
22069958 AC
1 AC
22069960 TACTTTGTAT
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
26 4 0.09
27 39 0.91
ACGTcount: A:0.25, C:0.33, G:0.23, T:0.19
Consensus pattern (27 bp):
ACCATTGGCGCCTCTCAGATAGGCACC
Found at i:22070035 original size:21 final size:22
Alignment explanation
Indices: 22069996--22070036 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
22069986 TTGACCCTGG
22069996 AAAAAATTAATTATATTTTATT
1 AAAAAATTAATTATATTTTATT
*
22070018 AAAAAATTAA-TATTTTTTA
1 AAAAAATTAATTATATTTTA
22070037 ATTCATTGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AAAAAATTAATTATATTTTATT
Found at i:22070608 original size:22 final size:21
Alignment explanation
Indices: 22070560--22070600 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22070550 ATAAAAAGGA
* *
22070560 ATTAAATTATTTTTTTTTATG
1 ATTAAAATATTTTTTATTATG
22070581 ATTAAAATATTTTTTATTAT
1 ATTAAAATATTTTTTATTAT
22070601 ATTCTAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTAAAATATTTTTTATTATG
Found at i:22073750 original size:161 final size:161
Alignment explanation
Indices: 22073485--22073964 Score: 768
Period size: 161 Copynumber: 3.0 Consensus size: 161
22073475 CTGGTGAGAA
* *
22073485 GTCCAATGTACAAGTTGCCAAAGATCATTAACCAACAATCAATGAAGTTTCCAGTGTTGGTCAAC
1 GTCCAATGTACAAGTTGCCAAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTCAAC
* *
22073550 TCAAAGAGCTCATCAAAGAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACATTTATATACA
66 TCAAAGAGCTCATCAAAAAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACCTTTATATACA
*
22073615 TAATCAAATCCATACACACAAAGGATTGACC
131 TACTCAAATCCATACACACAAAGGATTGACC
*
22073646 GTCCAATGTACAAGTTGCCAAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTTAAC
1 GTCCAATGTACAAGTTGCCAAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTCAAC
* * *
22073711 TCAAAGAGCTCATCAAATAAGCTATAAAAGACCAATTTGAAAGTGTTGATCTACCTTCATATACA
66 TCAAAGAGCTCATCAAAAAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACCTTTATATACA
* * *
22073776 TACTCAAATCCATACACACGAGGGATTGATC
131 TACTCAAATCCATACACACAAAGGATTGACC
*
22073807 GTCCAATGTACAAGTTGCCAAAAAAT-TTTAACCAACAATCAATGAAGTTTTCA--GTTGGTCAA
1 GTCCAATGTACAAGTTGCC-AAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTCAA
* *
22073869 CTCAAAGAGCTCCTCAAAAAAAGCTATAAAAGGCCAATTTGAAAGTGTTGATCCACCTTTATATA
65 CTCAAAGAGCTCATC-AAAAAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACCTTTATATA
* *
22073934 TATACTCAAATCCATACACACAAATGATTGA
129 CATACTCAAATCCATACACACAAAGGATTGA
22073965 TCGTTTGAGA
Statistics
Matches: 295, Mismatches: 22, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
159 22 0.07
160 72 0.24
161 196 0.66
162 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (161 bp):
GTCCAATGTACAAGTTGCCAAAGATCTTTAACCAACAATCAATGAAGTTTTCAGTGTTGGTCAAC
TCAAAGAGCTCATCAAAAAAGCTATAAAAGACCAATTTGAAAGTGTTGATCCACCTTTATATACA
TACTCAAATCCATACACACAAAGGATTGACC
Found at i:22077113 original size:43 final size:42
Alignment explanation
Indices: 22077046--22077160 Score: 160
Period size: 43 Copynumber: 2.7 Consensus size: 42
22077036 AGCGCCGCTA
* *
22077046 AAAACGCTGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCC-
1 AAAACGCCGCTATAGATC-AGACCTTTAGCGGCGCTTTTCCCG
22077088 ACAAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCG
1 A-AAACGCCGCTATAGATCA-GACCTTTAGCGGCGCTTTTCCCG
* *
22077132 AAAACGCCGCTATAGAACAAACCTTTAGC
1 AAAACGCCGCTATAGATCAGACCTTTAGC
22077161 AACACTTCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
42 11 0.17
43 54 0.82
44 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (42 bp):
AAAACGCCGCTATAGATCAGACCTTTAGCGGCGCTTTTCCCG
Found at i:22078417 original size:4 final size:4
Alignment explanation
Indices: 22078408--22078435 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
22078398 CAATATGTTA
22078408 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT
22078436 AAATGTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTAT
Found at i:22078679 original size:7 final size:7
Alignment explanation
Indices: 22078667--22078705 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
22078657 CTAATTAATT
22078667 TAAATCC
1 TAAATCC
22078674 TAAATCC
1 TAAATCC
* *
22078681 TGACTCC
1 TAAATCC
22078688 TAAATCC
1 TAAATCC
*
22078695 TAAAGCC
1 TAAATCC
22078702 TAAA
1 TAAA
22078706 CCCCTAACCC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.41, C:0.28, G:0.05, T:0.26
Consensus pattern (7 bp):
TAAATCC
Found at i:22078750 original size:7 final size:7
Alignment explanation
Indices: 22078738--22078798 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
22078728 CTCCAGCCCT
*
22078738 TAAACCG
1 TAAACCA
22078745 TAAACCA
1 TAAACCA
*
22078752 TAAATCA
1 TAAACCA
*
22078759 TAAATCA
1 TAAACCA
* *
22078766 TAAGCCC
1 TAAACCA
22078773 TAAACCCA
1 TAAA-CCA
*
22078781 TAATCCA
1 TAAACCA
*
22078788 TAAACCT
1 TAAACCA
22078795 TAAA
1 TAAA
22078799 TAATATCTTT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 38 0.88
8 5 0.12
ACGTcount: A:0.49, C:0.26, G:0.03, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:22078799 original size:36 final size:36
Alignment explanation
Indices: 22078700--22078799 Score: 89
Period size: 36 Copynumber: 2.8 Consensus size: 36
22078690 AATCCTAAAG
* * * *
22078700 CCTAAACCCCTAACCCCTAAACCTTAAA-CTCCAGC
1 CCTAAACCCATAAACCATAAACCTTAAATCTCAAGC
* * *
22078735 CCTTAAA-CCGTAAACCATAAATCATAAATCAT-AAGC
1 CC-TAAACCCATAAACCATAAACCTTAAATC-TCAAGC
*
22078771 CCTAAACCCATAATCCATAAACCTTAAAT
1 CCTAAACCCATAAACCATAAACCTTAAAT
22078800 AATATCTTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
35 22 0.43
36 28 0.55
37 1 0.02
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.21
Consensus pattern (36 bp):
CCTAAACCCATAAACCATAAACCTTAAATCTCAAGC
Found at i:22078826 original size:14 final size:14
Alignment explanation
Indices: 22078809--22078859 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
22078799 TAATATCTTT
*
22078809 TAAACCTTAAACCC
1 TAAACCATAAACCC
*
22078823 TAAACCATATACCC
1 TAAACCATAAACCC
* *
22078837 -CAACCCTAAACCC
1 TAAACCATAAACCC
*
22078850 TAAACTATAA
1 TAAACCATAA
22078860 TGATAATTAA
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
13 10 0.36
14 18 0.64
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:22079000 original size:19 final size:19
Alignment explanation
Indices: 22078976--22079107 Score: 201
Period size: 19 Copynumber: 6.8 Consensus size: 19
22078966 AATTTTTGAG
*
22078976 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
22078995 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
22079014 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22079033 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
22079054 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
22079073 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22079092 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22079108 ATATATGATT
Statistics
Matches: 104, Mismatches: 7, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
19 85 0.82
21 19 0.18
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22079043 original size:59 final size:57
Alignment explanation
Indices: 22078976--22079114 Score: 201
Period size: 59 Copynumber: 2.4 Consensus size: 57
22078966 AATTTTTGAG
* *
22078976 GATATGCAATCTTATATATGATATGCAATCCTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
* * *
22079033 GATATATGCAATCTTAGATATGATATGTAATCTTAGATATGATATATAATCTTAGATAT
1 G--ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
22079092 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
22079115 ATTTTGTAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 16 0.21
59 52 0.69
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
Found at i:22079147 original size:57 final size:57
Alignment explanation
Indices: 22078977--22079130 Score: 184
Period size: 59 Copynumber: 2.6 Consensus size: 57
22078967 ATTTTTGAGG
* * * **
22078977 ATATGCAATCTTATATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGA
1 ATATGCAATCTTAGATATGATATGTAATCTTAGA-ATGATATATAATCTTAGATATGA
22079035 TATATGCAATCTTAGATATGATATGTAATCTTAGATATGATATATAATCTTAGATATG-
1 -ATATGCAATCTTAGATATGATATGTAATCTTAGA-ATGATATATAATCTTAGATATGA
*
22079093 ATATGCAATCTTAGAATATATGATTTTGTAATCTTAGA
1 ATATGCAATCTTAG---ATATGA-TATGTAATCTTAGA
22079131 GATTTAATTT
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
57 14 0.16
59 52 0.61
60 6 0.07
61 13 0.15
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.40
Consensus pattern (57 bp):
ATATGCAATCTTAGATATGATATGTAATCTTAGAATGATATATAATCTTAGATATGA
Found at i:22079458 original size:6 final size:7
Alignment explanation
Indices: 22079441--22079470 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
22079431 GTAATTAAGT
22079441 TTTTTTA
1 TTTTTTA
22079448 TTTTTTA
1 TTTTTTA
22079455 TTTTTTA
1 TTTTTTA
22079462 -TTTTTA
1 TTTTTTA
22079468 TTT
1 TTT
22079471 ATTTTAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTTA
Found at i:22079458 original size:14 final size:13
Alignment explanation
Indices: 22079441--22079470 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
22079431 GTAATTAAGT
22079441 TTTTTTATTTTTTA
1 TTTTTTA-TTTTTA
22079455 TTTTTTATTTTTA
1 TTTTTTATTTTTA
22079468 TTT
1 TTT
22079471 ATTTTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:22079774 original size:10 final size:10
Alignment explanation
Indices: 22079759--22079783 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22079749 ATTTTTCTCA
22079759 TATATATATG
1 TATATATATG
22079769 TATATATATG
1 TATATATATG
22079779 TATAT
1 TATAT
22079784 TTATTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TATATATATG
Found at i:22079911 original size:25 final size:26
Alignment explanation
Indices: 22079868--22079917 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
22079858 TGTACATGTA
22079868 TATATTTTTTTAAACGAATATTTTCC
1 TATATTTTTTTAAACGAATATTTTCC
*
22079894 TATATTTTTTT-AATGAATATTTTC
1 TATATTTTTTTAAACGAATATTTTC
22079918 ATATTTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (26 bp):
TATATTTTTTTAAACGAATATTTTCC
Found at i:22080702 original size:98 final size:98
Alignment explanation
Indices: 22080581--22080777 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
22080571 TTAAAAATAA
* * *
22080581 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGCGATTTC
22080646 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* * *
22080679 TAAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAATGTATTGGGTGCGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGCGATTTC
*
22080744 TTAAATCTTGGATGAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
22080777 T
1 T
22080778 TTTATTGTAC
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGCGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:22085272 original size:8 final size:8
Alignment explanation
Indices: 22085259--22085300 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
22085249 CAGATTCAAA
22085259 AAAAAAAC
1 AAAAAAAC
22085267 AAAAAAAC
1 AAAAAAAC
22085275 --AAAAAC
1 AAAAAAAC
22085281 --AAAAAC
1 AAAAAAAC
22085287 AAAAAAAC
1 AAAAAAAC
22085295 AAAAAA
1 AAAAAA
22085301 TAAAAGTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 12 0.38
8 20 0.62
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:22085278 original size:14 final size:13
Alignment explanation
Indices: 22085256--22085305 Score: 73
Period size: 14 Copynumber: 3.6 Consensus size: 13
22085246 GTTCAGATTC
22085256 AAAAAAAAAACAA
1 AAAAAAAAAACAA
22085269 AAAAACAAAAACAA
1 AAAAA-AAAAACAA
22085283 AAACAAAAAAACAA
1 AAA-AAAAAAACAA
22085297 AAAATAAAA
1 AAAA-AAAA
22085306 GTGAAAGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.18
14 26 0.76
15 2 0.06
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (13 bp):
AAAAAAAAAACAA
Found at i:22085284 original size:20 final size:19
Alignment explanation
Indices: 22085255--22085305 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 19
22085245 AGTTCAGATT
22085255 CAAAAAAAAAACAAAAAAA
1 CAAAAAAAAAACAAAAAAA
22085274 CAAAAACAAAAACAAAAAAA
1 CAAAAA-AAAAACAAAAAAA
22085294 CAAAAAATAAAA
1 CAAAAAA-AAAA
22085306 GTGAAAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.23
20 23 0.77
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (19 bp):
CAAAAAAAAAACAAAAAAA
Found at i:22086717 original size:44 final size:44
Alignment explanation
Indices: 22086669--22087117 Score: 176
Period size: 44 Copynumber: 10.2 Consensus size: 44
22086659 AAGATTGTAG
*
22086669 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACGA
** * * *
22086713 ATCTTATCTTTCTAAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGACGA
* * * * ** * * * * *
22086756 AGCATTGTCGCCCTGAGCAACAGCGGAGAAGGTTGAAAATTGTA-G-
1 ATC-TTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-CG-ACGA
* * *
22086801 ATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACGA
* * * *
22086845 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CTACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGACGA
* * * * * ** * * *
22086888 AGCCTTGTCTCTCTCAGCAGCAGCAGAGAAGGTTGAAGATTGTA-G-
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-CG-ACGA
* **
22086933 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACGA
* * * *
22086977 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGACGA
* * * * * * * *
22087020 AGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTA--A
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-CG-ACGA
*
22087065 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACGA
22087109 ATCTTATCT
1 ATCTTATCT
22087118 TTCCAAGATA
Statistics
Matches: 276, Mismatches: 95, Indels: 68
0.63 0.22 0.15
Matches are distributed among these distances:
42 13 0.05
43 32 0.12
44 203 0.74
45 19 0.07
46 6 0.02
47 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACGA
Found at i:22086798 original size:132 final size:132
Alignment explanation
Indices: 22086557--22087209 Score: 1110
Period size: 132 Copynumber: 4.9 Consensus size: 132
22086547 CTGCATTGAC
*
22086557 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
22086622 CAAGCCTTGTCTCCCTGAGCAGCAACGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
22086687 GT
131 GT
* *
22086689 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * *
22086754 CAAGCATTGTCGCCCTGAGCAACAGCGGAGAAGGTTGAAAATTGTAGATCTTATCTCCCTAAACA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
22086819 GT
131 GT
*
22086821 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCTAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
22086886 CAAGCCTTGTCTCTCTCAGCAGCAGCAGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
22086951 GT
131 GT
*
22086953 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
22087018 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
22087083 GT
131 GT
*
22087085 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * *
22087150 CAAGCCTTGTCTTCCTAAGCAGCAGCGGAGAAGGTTGAAGATGGCA-AGTCTTATCTCCCT
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGA-TCTTATCTCCCT
22087210 GAAGTTGCAG
Statistics
Matches: 488, Mismatches: 32, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
131 1 0.00
132 487 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GT
Found at i:22087264 original size:44 final size:43
Alignment explanation
Indices: 22087195--22088044 Score: 497
Period size: 44 Copynumber: 19.6 Consensus size: 43
22087185 TGAAGATGGC
*
22087195 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGTCG
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* *
22087238 ATAGTCCTATCTCCCTGAAGTTGCAGTGGAGC-GAATTAAAACCTC-
1 A-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATT-AAA-GTCG
* ** * ***
22087283 AAATCTTATCTCTTTGAAGTTGCAG-AGAGCAGATCGCA-TC-
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* * * *
22087323 TAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-AAGTAAG
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT-CG
* * * *
22087366 CAAGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGG
1 -AAGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAG-TCG
* * *
22087411 CAAGTCTTATCTCCCTGAAGTTGCATTGGAGTAGATTAAAGCCG
1 -AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* * ** * * * ** *
22087455 ATAATCCTATCTCATTGAAGTTGCATTAGAGCGGATTAAAACCT
1 A-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* * * ***
22087499 TAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC-
1 AAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* * *
22087540 TAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAG
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT-CG
* * *
22087583 CAAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGG
1 -AAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGATTAAAG-TCG
* *
22087628 CAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCG
1 -AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* * * * ** *
22087672 ATAATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAACCTT
1 A-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTC-G
* * * ***
22087717 AAATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC-
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* * *
22087757 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAG
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT-CG
* * * * *
22087800 CAAGTCTTATC-CTCCTGAAGTTACAGTGGGGCAGACTGAAGATGG
1 -AAGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAG-TCG
*
22087845 CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG
1 -AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* * * * ** *
22087889 ATAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCT
1 A-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* * * ***
22087933 TAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC-
1 AAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
* * * * *
22087974 TAGTCATATCTCCCTAAAGTTGCAGTGAAGCAGACTAAA-TAAAC-
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT---CG
22088018 AAGTCTTATC-CTCCTGAAGTTGCAGTG
1 AAGTCTTATCTC-CCTGAAGTTGCAGTG
22088045 AGGCAGACTG
Statistics
Matches: 638, Mismatches: 124, Indels: 89
0.75 0.15 0.10
Matches are distributed among these distances:
40 89 0.14
41 38 0.06
42 4 0.01
43 44 0.07
44 334 0.52
45 119 0.19
46 10 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (43 bp):
AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCG
Found at i:22087432 original size:217 final size:217
Alignment explanation
Indices: 22087185--22088063 Score: 1506
Period size: 217 Copynumber: 4.1 Consensus size: 217
22087175 CGGAGAAGGT
* * *
22087185 TGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGTCGATAGTCCTATCT
1 TGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCT
* * * *
22087250 CCCTGAAGTTGCAGTGGAGCGAATTAAAACCTCAAATCTTATCTCTTTGAAGTTGCAGAGAGCAG
66 CCCTGAAGTTGCAGTAGAGCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGAGCAG
*
22087315 ATCGCATCTAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTC
131 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTC
*
22087380 CTGAAGTTGCAGTGGGGCAGAC
196 CTGAAGTTGCAGTGAGGCAGAC
* *
22087402 TGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCATTGGAGTAGATTAAAGCCGATAATCCTATCT
1 TGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCT
** * *
22087467 CATTGAAGTTGCATTAGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAG
66 CCCTGAAGTTGCAGTAGAGCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGAGCAG
22087532 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTC
131 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTC
22087597 CTGAAGTTGCAGTGAGGCAGAC
196 CTGAAGTTGCAGTGAGGCAGAC
*
22087619 TGAAGATGGCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCGATAATCCTATCT
1 TGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCT
* *
22087684 CCCTGAAATTGCAGTGGAGCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGAGCAG
66 CCCTGAAGTTGCAGTAGAGCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGAGCAG
* *
22087749 ATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTC
131 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTC
* *
22087814 CTGAAGTTACAGTGGGGCAGAC
196 CTGAAGTTGCAGTGAGGCAGAC
22087836 TGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCT
1 TGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCT
*
22087901 CCCTGAAGTTGCAGTAGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAG
66 CCCTGAAGTTGCAGTAGAGCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGAGCAG
* * * * *
22087966 ATCGCATCTAGTCATATCTCCCTAAAGTTGCAGTGAAGCAGACTAAATAAACAAGTCTTATCCTC
131 ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTC
22088031 CTGAAGTTGCAGTGAGGCAGAC
196 CTGAAGTTGCAGTGAGGCAGAC
22088053 TGAAGATGGCA
1 TGAAGATGGCA
22088064 CTAATTCCTA
Statistics
Matches: 621, Mismatches: 41, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
217 621 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (217 bp):
TGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCT
CCCTGAAGTTGCAGTAGAGCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGAGCAG
ATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTC
CTGAAGTTGCAGTGAGGCAGAC
Found at i:22087441 original size:89 final size:87
Alignment explanation
Indices: 22087324--22087879 Score: 414
Period size: 89 Copynumber: 6.4 Consensus size: 87
22087314 GATCGCATCT
*
22087324 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
*
22087389 CAGTGGGGCAGACTGAAGATGGCA
64 CAGTGGAGCAGACTGAAGATGGCA
* * * * * *
22087413 AGTCTTATCTCCCTGAAGTTGCATTGGAGTAGA-TTA-AAGCCGATAATCCTATCTCATTGAAGT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTATCTC-CTGAAGT
* * * * ** *
22087476 TGCATTAGAGCGGA-TTAA-A-ACCTT
62 TGCAGTGGAGCAGACTGAAGATGGC-A
* * * * * *
22087500 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCTTATCTCCCTGAAGTTG
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCT-CCTGAAGTTG
*
22087562 CAGTGGAGCAGACT-AAG-TAAGCA
64 CAGTGGAGCAGACTGAAGAT-GGCA
*
22087585 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAG
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCTTATCT-CCTGAAG
* * * ** **
22087648 TTGTAGTGGAGCAGATTAAAGCCGATA
61 TTGCAGTGGAGCAGACTGAAGATGGCA
* * * * * *
22087675 A-TCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAA-AACCTTAAATCTTATCTCTCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC--AAGTCTTATCTC-CTGAAGTT
* *
22087738 GCAG-AGAGCAGA-TCG--CAT--CA
63 GCAGTGGAGCAGACT-GAAGATGGCA
* *
22087758 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTAT-CTCCTGAAGTTG
*
22087823 CAGTGGGGCAGACTGAAGATGGCA
64 CAGTGGAGCAGACTGAAGATGGCA
22087847 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
22087880 TTAAAGCCGA
Statistics
Matches: 362, Mismatches: 68, Indels: 74
0.72 0.13 0.15
Matches are distributed among these distances:
83 3 0.01
84 98 0.27
85 19 0.05
86 14 0.04
87 23 0.06
88 53 0.15
89 144 0.40
90 8 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (87 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTCCTGAAGTTGCA
GTGGAGCAGACTGAAGATGGCA
Found at i:22087696 original size:133 final size:127
Alignment explanation
Indices: 22087546--22087790 Score: 298
Period size: 133 Copynumber: 1.9 Consensus size: 127
22087536 CATCTAGTCT
* * *
22087546 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AAGTCTTATC-CTCCTGAAGTTGCAG
1 TATCTCCCTGAAATTGCAGTGGAGCAGACTAA--AACCTAAATCTTATCTCT-CTGAAGTTGCAG
* * * *
22087609 TGAGGCAGA-CTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCGA
63 AGA-GCAGATC-G--CAT--CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGA
22087673 TAATCC
122 TAATCC
* *
22087679 TATCTCCCTGAAATTGCAGTGGAGCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAG
1 TATCTCCCTGAAATTGCAGTGGAGCAGACTAAAACC-TAAATCTTATCTCTCTGAAGTTGCAGAG
22087744 AGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
65 AGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
22087791 CTAAGTAAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
128 33 0.33
130 2 0.02
131 3 0.03
132 6 0.06
133 53 0.54
134 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (127 bp):
TATCTCCCTGAAATTGCAGTGGAGCAGACTAAAACCTAAATCTTATCTCTCTGAAGTTGCAGAGA
GCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCC
Found at i:22087766 original size:173 final size:174
Alignment explanation
Indices: 22087546--22087920 Score: 422
Period size: 173 Copynumber: 2.1 Consensus size: 174
22087536 CATCTAGTCT
* * * * *
22087546 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC-CTCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTAGAGCAGA-T-CG-CATCAAATCTTATCTC-CCTGAAGTTGCAGT
* ** * *
22087610 -GAGGCAGACTGAAG-ATGGCAAGTCTTAT-CTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCG
62 GGA-GCAGACT-AAGTA-AGCAAGTCTTATCCT-CCTGAAGTTACAGTGGAGCAGACTAAAGACG
* * * *
22087672 ATAA-TCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAACC-TTAAATCT
123 ACAAGTCCTATCTCCCTGAAATTGCAGTGGAGCAGATTAAAACCGAT-AATCC
*
22087723 TATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
1 TATCTCCCTGAAGTTGCAGTAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
* * * * *
22087787 CAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAGTCT
66 CAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGAGCAGACTAAAGACGACAAGTCC
* *
22087852 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCC
131 TATCTCCCTGAAATTGCAGTGGAGCAGATTAAAACCGATAATCC
22087896 TATCTCCCTGAAGTTGCAGTAGAGC
1 TATCTCCCTGAAGTTGCAGTAGAGC
22087921 GGATTAAAAC
Statistics
Matches: 168, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
172 40 0.24
173 92 0.55
174 10 0.06
175 1 0.01
176 7 0.04
177 18 0.11
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (174 bp):
TATCTCCCTGAAGTTGCAGTAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
CAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGAGCAGACTAAAGACGACAAGTCC
TATCTCCCTGAAATTGCAGTGGAGCAGATTAAAACCGATAATCC
Found at i:22088253 original size:19 final size:19
Alignment explanation
Indices: 22088229--22088360 Score: 201
Period size: 19 Copynumber: 6.8 Consensus size: 19
22088219 AATTTTTGAG
*
22088229 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
22088248 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
22088267 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22088286 GATGTATGCAATCTTAGATAT
1 GA--TATGCAATCTTAGATAT
*
22088307 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
22088326 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
22088345 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
22088361 ATATATGATT
Statistics
Matches: 104, Mismatches: 7, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
19 85 0.82
21 19 0.18
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:22088298 original size:59 final size:57
Alignment explanation
Indices: 22088229--22088367 Score: 201
Period size: 59 Copynumber: 2.4 Consensus size: 57
22088219 AATTTTTGAG
* *
22088229 GATATGCAATCTTATATATGATATGCAATCCTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
* * *
22088286 GATGTATGCAATCTTAGATATGATATGTAATCTTAGATATGATATATAATCTTAGATAT
1 GA--TATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
22088345 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
22088368 ATTTTGTAAT
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
55 5 0.07
56 2 0.03
57 16 0.21
59 52 0.69
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.38
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
Found at i:22088400 original size:57 final size:57
Alignment explanation
Indices: 22088231--22088383 Score: 182
Period size: 59 Copynumber: 2.6 Consensus size: 57
22088221 TTTTTGAGGA
* * * **
22088231 TATGCAATCTTATATATGATATGCAATCCTAGATATGATATGCAATCTTAGATATGATG
1 TATGCAATCTTAGATATGATATGTAATCTTAGA-ATGATATATAATCTTAGATATGA-G
22088290 TATGCAATCTTAGATATGATATGTAATCTTAGATATGATATATAATCTTAGATATGA-
1 TATGCAATCTTAGATATGATATGTAATCTTAGA-ATGATATATAATCTTAGATATGAG
*
22088347 TATGCAATCTTAGAATATATGATTTTGTAATCTTAGA
1 TATGCAATCTTAG---ATATGA-TATGTAATCTTAGA
22088384 GATTTAATTT
Statistics
Matches: 84, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
57 13 0.15
59 52 0.62
60 6 0.07
61 13 0.15
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (57 bp):
TATGCAATCTTAGATATGATATGTAATCTTAGAATGATATATAATCTTAGATATGAG
Found at i:22088876 original size:25 final size:24
Alignment explanation
Indices: 22088848--22088929 Score: 69
Period size: 24 Copynumber: 3.4 Consensus size: 24
22088838 TTACCCTAGA
22088848 TTTTTTAAT-TGCAATTCAATTTAGT
1 TTTTTTAATGTGC--TTCAATTTAGT
* *
22088873 TTTTTTTATGTTCTTCAATTTAGT
1 TTTTTTAATGTGCTTCAATTTAGT
* * **
22088897 TTTTTTTATGTTCTTTTATTTA-T
1 TTTTTTAATGTGCTTCAATTTAGT
22088920 TTTATTTAAT
1 TTT-TTTAAT
22088930 TAATGTGTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 36 0.72
25 8 0.16
26 2 0.04
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.67
Consensus pattern (24 bp):
TTTTTTAATGTGCTTCAATTTAGT
Found at i:22088918 original size:24 final size:24
Alignment explanation
Indices: 22088862--22088911 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
22088852 TTAATTGCAA
22088862 TTCAATTTAGTTTTTTTTATGTTC
1 TTCAATTTAGTTTTTTTTATGTTC
22088886 TTCAATTTAGTTTTTTTTATGTTC
1 TTCAATTTAGTTTTTTTTATGTTC
22088910 TT
1 TT
22088912 TTATTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.16, C:0.08, G:0.08, T:0.68
Consensus pattern (24 bp):
TTCAATTTAGTTTTTTTTATGTTC
Found at i:22089711 original size:131 final size:132
Alignment explanation
Indices: 22089573--22089837 Score: 459
Period size: 132 Copynumber: 2.0 Consensus size: 132
22089563 TTTTTTACTC
22089573 AAATTTAAAGATAG-AATTTTTTAAAAATTGAGATAATG-TCGTATTTA-GATTTTCAAGGGAAT
1 AAATTTAAAGATAGAAATTTTTT-AAAATTGAGATAATGTTCGTATTTAGGATTTTCAAGGGAAT
22089635 TGAGCCCTAACGTTTGGGTTCCGA-TTTCTTCGTTAAATCCGACAATCGAGCATTT-TCTTCAAT
65 TGAGCCCT-A-GTTTGGGTTCCGATTTTCTTCGTTAAATCCGACAATCG-GCATTTCTCTTCAAT
22089698 CAAAAA
127 CAAAAA
22089704 AAATTTAAAGATAGAAATTTTTTAAAATTGAGATAATGTTCGTATTTAGGATTTTCAAGGGAATT
1 AAATTTAAAGATAGAAATTTTTTAAAATTGAGATAATGTTCGTATTTAGGATTTTCAAGGGAATT
22089769 GAGCCCTAGTTTGGGTTCCGATTTTCTTCGTTAAATCCGACAATCGGCATTTCTCTTCAATCAAA
66 GAGCCCTAGTTTGGGTTCCGATTTTCTTCGTTAAATCCGACAATCGGCATTTCTCTTCAATCAAA
22089834 AA
131 AA
22089836 AA
1 AA
22089838 TAAAAACTCA
Statistics
Matches: 129, Mismatches: 0, Indels: 9
0.93 0.00 0.07
Matches are distributed among these distances:
131 48 0.37
132 58 0.45
133 23 0.18
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (132 bp):
AAATTTAAAGATAGAAATTTTTTAAAATTGAGATAATGTTCGTATTTAGGATTTTCAAGGGAATT
GAGCCCTAGTTTGGGTTCCGATTTTCTTCGTTAAATCCGACAATCGGCATTTCTCTTCAATCAAA
AA
Found at i:22090629 original size:20 final size:21
Alignment explanation
Indices: 22090591--22090631 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22090581 CCTAACGTCT
*
22090591 AACCCCTAAACCTTGAATCCC
1 AACCCCTAAACCATGAATCCC
*
22090612 AACCCTTAAACCAT-AATCCC
1 AACCCCTAAACCATGAATCCC
22090632 TAATCCATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.37, C:0.41, G:0.02, T:0.20
Consensus pattern (21 bp):
AACCCCTAAACCATGAATCCC
Found at i:22091084 original size:41 final size:40
Alignment explanation
Indices: 22090999--22091118 Score: 127
Period size: 41 Copynumber: 2.9 Consensus size: 40
22090989 TAAAATATCT
*
22090999 TTAGCGGCG-CATTTTCAAAAACGCCACTAAAG-CCAAGAGAA
1 TTAGCGGCGCCA-TTTCAAAAACGCCGCTAAAGACC--GAGAA
*
22091040 TTAGCGGCGCCATTTCAAAAACGCCGCTAAAGAACCGAGCA
1 TTAGCGGCGCCATTTCAAAAACGCCGCTAAAG-ACCGAGAA
** **
22091081 TTAGCGGCGCTTTTTTGAAAACGCCGCTAAAGATCCGA
1 TTAGCGGCGCCATTTCAAAAACGCCGCTAAAGA-CCGA
22091119 AAGGTAAGAA
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
40 1 0.01
41 64 0.93
42 2 0.03
43 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.19
Consensus pattern (40 bp):
TTAGCGGCGCCATTTCAAAAACGCCGCTAAAGACCGAGAA
Found at i:22093126 original size:18 final size:19
Alignment explanation
Indices: 22093103--22093147 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
22093093 AAATTTACTA
22093103 ATTAATTT-TTTGGACCAC
1 ATTAATTTCTTTGGACCAC
22093121 ATTAATTTCTTTGGACCAC
1 ATTAATTTCTTTGGACCAC
22093140 ATTAATTT
1 ATTAATTT
22093148 AAGATCTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTAATTTCTTTGGACCAC
Found at i:22103783 original size:54 final size:54
Alignment explanation
Indices: 22103635--22103772 Score: 195
Period size: 54 Copynumber: 2.6 Consensus size: 54
22103625 ACCCACACAG
* * *
22103635 CCGTGTGCCTTAAAATAGTGAGTAACACGGTCTGAGACACGACCAATGACATGA
1 CCGTGTGTCTTAAAACAGTGAGTAACACGGTCTGAGACACGACCAACGACATGA
** * * *
22103689 CTATGTGTTTTAAAACAGTGAGTAACATGGTCTGAGACACGGCCAACGACATGA
1 CCGTGTGTCTTAAAACAGTGAGTAACACGGTCTGAGACACGACCAACGACATGA
*
22103743 CCGTGTGTCTTAAAACAGTGAGTTACACGG
1 CCGTGTGTCTTAAAACAGTGAGTAACACGG
22103773 GTAGATACAC
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (54 bp):
CCGTGTGTCTTAAAACAGTGAGTAACACGGTCTGAGACACGACCAACGACATGA
Found at i:22105671 original size:21 final size:21
Alignment explanation
Indices: 22105641--22105688 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
22105631 TGAACAATTC
* *
22105641 AACTAGATCAAAATCCATCTA
1 AACTAAATCAAAATCCAACTA
22105662 AACTAAATCAAAATCCAACTA
1 AACTAAATCAAAATCCAACTA
22105683 AACTAA
1 AACTAA
22105689 CCATGCCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.54, C:0.23, G:0.02, T:0.21
Consensus pattern (21 bp):
AACTAAATCAAAATCCAACTA
Found at i:22113173 original size:36 final size:37
Alignment explanation
Indices: 22113108--22113189 Score: 103
Period size: 36 Copynumber: 2.2 Consensus size: 37
22113098 TTCTAATTGG
* * **
22113108 AACACACCAGATGCTTATAAGAGATAATCCATTCGA-
1 AACACACCAGATGCTCATAAGAGACAATCCACCCGAT
* *
22113144 AACACACCAGATGCTCATACGAGCCAATCCACCCGAT
1 AACACACCAGATGCTCATAAGAGACAATCCACCCGAT
22113181 AACACACCA
1 AACACACCA
22113190 ATGGCTCCGA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
36 30 0.77
37 9 0.23
ACGTcount: A:0.40, C:0.32, G:0.12, T:0.16
Consensus pattern (37 bp):
AACACACCAGATGCTCATAAGAGACAATCCACCCGAT
Found at i:22119345 original size:17 final size:17
Alignment explanation
Indices: 22119320--22119359 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
22119310 TAGAATTGGG
* *
22119320 TTGAGAAAATTATTTAA
1 TTGAAAAAATTAATTAA
22119337 TTGAAAAAATTAATTAA
1 TTGAAAAAATTAATTAA
22119354 TT-AAAA
1 TTGAAAA
22119360 CTAATTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (17 bp):
TTGAAAAAATTAATTAA
Found at i:22120199 original size:30 final size:31
Alignment explanation
Indices: 22120159--22120243 Score: 75
Period size: 30 Copynumber: 2.8 Consensus size: 31
22120149 ATTACATTTC
* *
22120159 CATACTTTGTATTCATTCACATTTGTA-TAT
1 CATACCTTGTATTCATTCACATTTGCATTAT
** *
22120189 CATACCTTGTAATT-GGTCACATTTGCATTTT
1 CATACCTTGT-ATTCATTCACATTTGCATTAT
* * *
22120220 CATACCCTGTAATCATTCATATTT
1 CATACCTTGTATTCATTCACATTT
22120244 TCACATATAT
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
30 21 0.50
31 21 0.50
ACGTcount: A:0.26, C:0.20, G:0.08, T:0.46
Consensus pattern (31 bp):
CATACCTTGTATTCATTCACATTTGCATTAT
Found at i:22120231 original size:31 final size:30
Alignment explanation
Indices: 22120175--22120232 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
22120165 TTGTATTCAT
* *
22120175 TCACATTTGTATATCATACCTTGTAATTGG
1 TCACATTTGCATATCATACCCTGTAATTGG
*
22120205 TCACATTTGCATTTTCATACCCTGTAAT
1 TCACATTTGCA-TATCATACCCTGTAAT
22120233 CATTCATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 10 0.42
31 14 0.58
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (30 bp):
TCACATTTGCATATCATACCCTGTAATTGG
Found at i:22126149 original size:46 final size:46
Alignment explanation
Indices: 22126096--22126235 Score: 228
Period size: 46 Copynumber: 3.0 Consensus size: 46
22126086 CCATGGCAAA
*
22126096 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATTCTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
*
22126142 TTGTGAAAAGTAGGTATGGTGTTTCAATGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
* *
22126188 TTGTGAAAAGTAGGTATGGTATTTCAGTGAA-AGAAACTATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGA-AAACCATACTGAG
22126234 TT
1 TT
22126236 ATAGCATTGT
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 1 0.01
46 87 0.99
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
Found at i:22129104 original size:24 final size:26
Alignment explanation
Indices: 22129076--22129124 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
22129066 GCTAGGAACC
22129076 ACAAC-ATG-ACCCTTCCTGCTGAAA
1 ACAACAATGTACCCTTCCTGCTGAAA
*
22129100 ACAACAATGTTGCCCTTCCTGCTGA
1 ACAACAATG-TACCCTTCCTGCTGA
22129125 GAACGACGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
27 13 0.62
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (26 bp):
ACAACAATGTACCCTTCCTGCTGAAA
Found at i:22129196 original size:7 final size:7
Alignment explanation
Indices: 22129179--22129210 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
22129169 ATAATATGCC
22129179 TTAGTTAT
1 TTAG-TAT
22129187 TTAGTAT
1 TTAGTAT
22129194 TTAGTAT
1 TTAGTAT
22129201 TTAGTAT
1 TTAGTAT
22129208 TTA
1 TTA
22129211 TTTGTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.59
Consensus pattern (7 bp):
TTAGTAT
Found at i:22129557 original size:69 final size:69
Alignment explanation
Indices: 22129442--22129593 Score: 198
Period size: 69 Copynumber: 2.2 Consensus size: 69
22129432 TTGGACCTGT
* * * * * *
22129442 GAGCCCTAAAATGACAGTTAGAAGTTTTTAGCTCTCGCTAATTGTTTGGGGCTACAATGTTTGAC
1 GAGCCATAAAATGAAAGTTAGAAGCTTTTAACTCTCGCTAACTGTTTGGGGCTACAATGTTTAAC
22129507 ATGC
66 ATGC
* * *
22129511 GAGCCATAAAATGAAAGTT-GATAGCTTTTAACTCTCGTTAACTGTTTGGGGCTGCAGTGTTTAA
1 GAGCCATAAAATGAAAGTTAGA-AGCTTTTAACTCTCGCTAACTGTTTGGGGCTACAATGTTTAA
*
22129575 CCTGC
65 CATGC
22129580 GAGCCATAAAATGA
1 GAGCCATAAAATGA
22129594 CACTCGTTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
68 2 0.03
69 70 0.97
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (69 bp):
GAGCCATAAAATGAAAGTTAGAAGCTTTTAACTCTCGCTAACTGTTTGGGGCTACAATGTTTAAC
ATGC
Found at i:22129605 original size:52 final size:52
Alignment explanation
Indices: 22129544--22129643 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
22129534 GCTTTTAACT
* * *
22129544 CTCGTTAACTGTTTGGGGCTGCAGTGTTTAACCTGCGAGCCATAAAATGACA
1 CTCGTTAACTATTTGGGGCTGCAGTGTTTAACCTACAAGCCATAAAATGACA
* * *
22129596 CTCGTTAACTATTTGGGGTTGCGGTGTTTAACCTACAAGCCTTAAAAT
1 CTCGTTAACTATTTGGGGCTGCAGTGTTTAACCTACAAGCCATAAAAT
22129644 TATAGTTGGG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (52 bp):
CTCGTTAACTATTTGGGGCTGCAGTGTTTAACCTACAAGCCATAAAATGACA
Found at i:22129727 original size:69 final size:69
Alignment explanation
Indices: 22129615--22129885 Score: 299
Period size: 69 Copynumber: 3.9 Consensus size: 69
22129605 TATTTGGGGT
* * * * * * * * *
22129615 TGCGGTGTTTAACCTACAAGCCTTAAAATTATAGTTGGGAGCTTTTAACTCTCGCTGATTGTTTA
1 TGCGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAATTGTTTA
*
22129680 GGGT
66 GGGC
* ** * * *
22129684 TGCGGTGTTCAACCTGCGAGCCATAAAATGACAGCTAAAAGCTTTTAACTCTCAATAACTGTTTG
1 TGCGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAATTGTTTA
22129749 GGGC
66 GGGC
** * * * * *
22129753 TATGGTGTTTAACTTGCGAGCCATGAAATGACAGCTAGGAGTTTTTAACTATCACCAATTGTTTA
1 TGCGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAATTGTTTA
22129818 GGGC
66 GGGC
* * * *
22129822 TGCGGTGTTTAACCTACGAGCCATAAAATGACAGCTCGGAGCTTTTAACTCTCGCTAACTGTTT
1 TGCGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAATTGTTT
22129886 TGGTTTTCGA
Statistics
Matches: 162, Mismatches: 40, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
69 162 1.00
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (69 bp):
TGCGGTGTTTAACCTGCGAGCCATAAAATGACAGCTAGGAGCTTTTAACTCTCACTAATTGTTTA
GGGC
Found at i:22131997 original size:88 final size:88
Alignment explanation
Indices: 22131837--22132004 Score: 192
Period size: 88 Copynumber: 1.9 Consensus size: 88
22131827 ACTCCGTCGT
* * * **
22131837 TCCTAATACTGACACTCCGTGCGAGCTTCAAGCCTGTTGGACACGTGTCTCACTTTGGGTCACCA
1 TCCTAATACTAACACTCCATGCGAGCTTCAAGCCTGCTGGACACGTGTCTCACCCTGGGTCACCA
*
22131902 ACGGAGCATGCGGTCCTTTTCGA
66 ACAGAGCATGCGGTCCTTTTCGA
* * * * * * * * *
22131925 TCCTAGTACTAACATTCCATGCGGGCTTCAGGCCTGCTGGACAGGTGTTTTACCCTGGGTCGCCT
1 TCCTAATACTAACACTCCATGCGAGCTTCAAGCCTGCTGGACACGTGTCTCACCCTGGGTCACCA
*
22131990 ACAGAGCATGTGGTC
66 ACAGAGCATGCGGTC
22132005 TCCCTTTTGC
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
88 64 1.00
ACGTcount: A:0.18, C:0.29, G:0.26, T:0.27
Consensus pattern (88 bp):
TCCTAATACTAACACTCCATGCGAGCTTCAAGCCTGCTGGACACGTGTCTCACCCTGGGTCACCA
ACAGAGCATGCGGTCCTTTTCGA
Found at i:22134184 original size:22 final size:22
Alignment explanation
Indices: 22134133--22134184 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
22134123 TTTTATAGTT
*
22134133 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
22134156 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
22134178 ATAATAA
1 ATAATAA
22134185 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:22138171 original size:15 final size:15
Alignment explanation
Indices: 22138151--22138182 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22138141 TGTAAGTTTC
22138151 TTAGAAATAAAATGA
1 TTAGAAATAAAATGA
*
22138166 TTAGAAATAAGATGA
1 TTAGAAATAAAATGA
22138181 TT
1 TT
22138183 GGGGAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (15 bp):
TTAGAAATAAAATGA
Found at i:22140844 original size:21 final size:21
Alignment explanation
Indices: 22140818--22140861 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
22140808 AAATAGAGCT
22140818 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
22140839 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
22140860 TC
1 TC
22140862 AATTGAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.09, C:0.16, G:0.32, T:0.43
Consensus pattern (21 bp):
TCTTTGAGTCTGCTGTGAGTG
Found at i:22148535 original size:38 final size:36
Alignment explanation
Indices: 22148487--22148561 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 36
22148477 TTCAACTTAG
*
22148487 CCTTCCATTTATTTATTTTTACCTTTTTAGACTTTAAA
1 CCTTCCATTTA-TT-TTTTCACCTTTTTAGACTTTAAA
* * *
22148525 CCTTCTATTTATTTTTTCACTTTTTTAGTCTTTAAA
1 CCTTCCATTTATTTTTTCACCTTTTTAGACTTTAAA
22148561 C
1 C
22148562 TTGCTTTTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 21 0.64
37 2 0.06
38 10 0.30
ACGTcount: A:0.21, C:0.19, G:0.03, T:0.57
Consensus pattern (36 bp):
CCTTCCATTTATTTTTTCACCTTTTTAGACTTTAAA
Found at i:22148659 original size:30 final size:29
Alignment explanation
Indices: 22148625--22148683 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
22148615 TTTGAATAAT
22148625 TTTTTAAAATTTTAAAAGTTATAAAAAATA
1 TTTTTAAAATTTTAAAA-TTATAAAAAATA
* * *
22148655 TTTTTAATATTTTTAAATTTTAAAAAATA
1 TTTTTAAAATTTTAAAATTATAAAAAATA
22148684 ATTAAATGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
TTTTTAAAATTTTAAAATTATAAAAAATA
Found at i:22157517 original size:26 final size:26
Alignment explanation
Indices: 22157483--22157532 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
22157473 TGAGCGTTCC
22157483 ATTATATGGCTCTTCGTGAGCTTCTTG
1 ATTATATGGCTCTTCG-GAGCTTCTTG
22157510 ATTA-ATGGCTCTTCGGAGCTTCT
1 ATTATATGGCTCTTCGGAGCTTCT
22157533 CGATATGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 8 0.35
26 11 0.48
27 4 0.17
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (26 bp):
ATTATATGGCTCTTCGGAGCTTCTTG
Found at i:22157637 original size:73 final size:73
Alignment explanation
Indices: 22157501--22157638 Score: 188
Period size: 73 Copynumber: 1.9 Consensus size: 73
22157491 GCTCTTCGTG
* * * * *
22157501 AGCTTCTTGATTAATGGCTCTTCGGAGCTTCTCGATATGGCTCGCTTGAACTTTTCGATATATGG
1 AGCTTCTTGATTAATGGCTCTTCAGAGCTACTCGATATGGCTCACATGAACTTTCCGATATATGG
22157566 TTATCCGA
66 TTATCCGA
* * *
22157574 AGCTTCTTGATTAATGGCTTTTCAGAGCTACTCGTTATTGGCTCACATGAGCTTTCCGA-ATATG
1 AGCTTCTTGATTAATGGCTCTTCAGAGCTACTCGATA-TGGCTCACATGAACTTTCCGATATATG
22157638 G
65 G
22157639 CTCTTATGAG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
73 39 0.70
74 17 0.30
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (73 bp):
AGCTTCTTGATTAATGGCTCTTCAGAGCTACTCGATATGGCTCACATGAACTTTCCGATATATGG
TTATCCGA
Found at i:22157651 original size:73 final size:73
Alignment explanation
Indices: 22157485--22157653 Score: 184
Period size: 73 Copynumber: 2.3 Consensus size: 73
22157475 AGCGTTCCAT
* * * * *
22157485 TATATGGCTCTTCGTGAGCTTCTTGATTAATGGCTCTTCGGAGCTTCTCGATATGGCTCGCTTGA
1 TATATGGCTCTT-ATGAGCTTCTTGATTAATGGCTCTTCAGAGCTACTCGATATGGCTCACATGA
*
22157550 ACTTTTCGA
65 ACTTTCCGA
* *
22157559 TATATGG---TTATCCGAAGCTTCTTGATTAATGGCTTTTCAGAGCTACTCGTTATTGGCTCACA
1 TATATGGCTCTTAT--G-AGCTTCTTGATTAATGGCTCTTCAGAGCTACTCGATA-TGGCTCACA
*
22157621 TGAGCTTTCCGA
62 TGAACTTTCCGA
22157633 -ATATGGCTCTTATGAGCTTCT
1 TATATGGCTCTTATGAGCTTCT
22157654 CGTTATACAG
Statistics
Matches: 79, Mismatches: 9, Indels: 15
0.77 0.09 0.15
Matches are distributed among these distances:
70 1 0.01
71 2 0.03
72 1 0.01
73 46 0.58
74 25 0.32
76 4 0.05
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (73 bp):
TATATGGCTCTTATGAGCTTCTTGATTAATGGCTCTTCAGAGCTACTCGATATGGCTCACATGAA
CTTTCCGA
Found at i:22157683 original size:25 final size:25
Alignment explanation
Indices: 22157647--22157710 Score: 58
Period size: 25 Copynumber: 2.6 Consensus size: 25
22157637 GGCTCTTATG
**
22157647 AGCTT-CTCGTTATACAGCCCGGATA
1 AGCTTCCT-GTTATACAGCCCACATA
* * *
22157672 AGCTTCCTGTTACACGGCTCACATA
1 AGCTTCCTGTTATACAGCCCACATA
*
22157697 AGCTTCATGTTATA
1 AGCTTCCTGTTATA
22157711 TGGCTCGAGA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
25 29 0.94
26 2 0.06
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (25 bp):
AGCTTCCTGTTATACAGCCCACATA
Found at i:22166388 original size:2 final size:2
Alignment explanation
Indices: 22166381--22166410 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22166371 AAGGGGGACT
22166381 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
22166411 AAGGGGAGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:22171244 original size:43 final size:43
Alignment explanation
Indices: 22171197--22171375 Score: 236
Period size: 43 Copynumber: 4.2 Consensus size: 43
22171187 ATGCCGCTAA
* *
22171197 CTTTAGCGGCTATTTTCCCACAAACGCCTCTAAAGACCAAAAC
1 CTTTAGCGGCTATTTCCCCACAAACGCCGCTAAAGACCAAAAC
*
22171240 CTTTAGCGG-TGCTTTCCCCACAAACGCCGCTAAAGACCAAAAC
1 CTTTAGCGGCT-ATTTCCCCACAAACGCCGCTAAAGACCAAAAC
** * * *
22171283 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCTATTTCCCCACAAACGCCGCTAAAGACCAAAAC
* *
22171326 CTTTAGCGGC-ACTTTCCCCACAAACGCTGCTAAAGACCAAGAC
1 CTTTAGCGGCTA-TTTCCCCACAAACGCCGCTAAAGACCAAAAC
22171369 CTTTAGC
1 CTTTAGC
22171376 TTTAGCGACG
Statistics
Matches: 122, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.01
43 121 0.99
ACGTcount: A:0.30, C:0.34, G:0.16, T:0.21
Consensus pattern (43 bp):
CTTTAGCGGCTATTTCCCCACAAACGCCGCTAAAGACCAAAAC
Found at i:22171299 original size:86 final size:86
Alignment explanation
Indices: 22171197--22171375 Score: 277
Period size: 86 Copynumber: 2.1 Consensus size: 86
22171187 ATGCCGCTAA
* * **
22171197 CTTTAGCGGCTATTTTCCCACAAACGCCTCTAAAGACCAAAACCTTTAGCGGTGCTTTCCCCACA
1 CTTTAGCGGCGATTTTCCCACAAACGCCGCTAAAGACCAAAACCTTTAGCGGCACTTTCCCCACA
22171262 AACGCCGCTAAAGACCAAAAC
66 AACGCCGCTAAAGACCAAAAC
* * *
22171283 CTTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTCCCCACA
1 CTTTAGCGGCGATTTTCCCACAAACGCCGCTAAAGACCAAAACCTTTAGCGGCACTTTCCCCACA
* *
22171348 AACGCTGCTAAAGACCAAGAC
66 AACGCCGCTAAAGACCAAAAC
22171369 CTTTAGC
1 CTTTAGC
22171376 TTTAGCGACG
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.30, C:0.34, G:0.16, T:0.21
Consensus pattern (86 bp):
CTTTAGCGGCGATTTTCCCACAAACGCCGCTAAAGACCAAAACCTTTAGCGGCACTTTCCCCACA
AACGCCGCTAAAGACCAAAAC
Found at i:22174973 original size:9 final size:9
Alignment explanation
Indices: 22174959--22174985 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
22174949 CTATATATCC
22174959 ATATCAAAT
1 ATATCAAAT
22174968 ATATCAAAT
1 ATATCAAAT
22174977 ATATCAAAT
1 ATATCAAAT
22174986 GGTTTAGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (9 bp):
ATATCAAAT
Found at i:22175548 original size:24 final size:24
Alignment explanation
Indices: 22175517--22175576 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
22175507 ATTATATATG
22175517 AAAT-TATTTAATATATAAATTAA
1 AAATATATTTAATATATAAATTAA
*
22175540 AAATATATTTAAAATATAAATTAA
1 AAATATATTTAATATATAAATTAA
* *
22175564 AAAAATAATTAAT
1 AAATATATTTAAT
22175577 CTAAACCCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 4 0.12
24 28 0.88
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AAATATATTTAATATATAAATTAA
Found at i:22175564 original size:12 final size:12
Alignment explanation
Indices: 22175524--22175565 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
22175514 ATGAAATTAT
*
22175524 TTAATATATAAA
1 TTAAAATATAAA
*
22175536 TTAAAA-ATATAT
1 TTAAAATATA-AA
22175548 TTAAAATATAAA
1 TTAAAATATAAA
22175560 TTAAAA
1 TTAAAA
22175566 AAATAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 3 0.12
12 19 0.76
13 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TTAAAATATAAA
Found at i:22175573 original size:12 final size:12
Alignment explanation
Indices: 22175529--22175575 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
22175519 ATTATTTAAT
22175529 ATATAAATTAAAA
1 ATAT-AATTAAAA
*
22175542 ATAT-ATTTAAA
1 ATATAATTAAAA
22175553 ATATAAATTAAAA
1 ATAT-AATTAAAA
*
22175566 AAATAATTAA
1 ATATAATTAA
22175576 TCTAAACCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 10 0.34
12 6 0.21
13 13 0.45
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
ATATAATTAAAA
Found at i:22176116 original size:41 final size:41
Alignment explanation
Indices: 22176058--22176215 Score: 255
Period size: 41 Copynumber: 3.9 Consensus size: 41
22176048 TAAAATGTTT
22176058 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCA
* ** *
22176099 TTAGCGGCGCTTATCCAAAAACGCCGCTAAATCCCCCAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCA
22176140 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCCAAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCA
**
22176180 TTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGACCC
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCC
22176216 GAAAGGTAAG
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
40 37 0.35
41 70 0.65
ACGTcount: A:0.30, C:0.32, G:0.19, T:0.19
Consensus pattern (41 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCA
Found at i:22176207 original size:81 final size:82
Alignment explanation
Indices: 22176058--22176210 Score: 272
Period size: 81 Copynumber: 1.9 Consensus size: 82
22176048 TAAAATGTTT
22176058 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTATCCAAAAACGC
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTATCCAAAAACGC
22176123 CGCTAAATCCCCCAGCA
66 CGCTAAATCCCCCAGCA
* **
22176140 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCCAAGCATTAGCGGCGCTTTTTTAAAAACGC
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTATCCAAAAACGC
22176204 CGCTAAA
66 CGCTAAA
22176211 GACCCGAAAG
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
81 36 0.53
82 32 0.47
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (82 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCAAGCATTAGCGGCGCTTATCCAAAAACGC
CGCTAAATCCCCCAGCA
Found at i:22176293 original size:40 final size:38
Alignment explanation
Indices: 22176249--22176402 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 38
22176239 TGGGCTTTGG
*
22176249 TTTTTTGTGGCGTTTTTTCCATAAACGCCGCTAATGCTCA
1 TTTTTAGTGGCG--TTTTCCATAAACGCCGCTAATGCTCA
* * * *
22176289 TTTTTAGCGGCAATTTTCAAAAAACGCCGCTAATGCTCCA
1 TTTTTAGTGGC-GTTTTCCATAAACGCCGCTAATGCT-CA
* * *
22176329 TCTTTAGTGGCGATTTCCGTAAAACGCCGCTAATGCTCGA
1 TTTTTAGTGGCGTTTTCCAT-AAACGCCGCTAATGCTC-A
* * **
22176369 TTTTTACTGACGTTTTTAATCCAAACGCCGCTAA
1 TTTTTAGTGGCGTTTTCCAT--AAACGCCGCTAA
22176403 AAGCGCCGCT
Statistics
Matches: 89, Mismatches: 20, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
39 27 0.30
40 50 0.56
41 12 0.13
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (38 bp):
TTTTTAGTGGCGTTTTCCATAAACGCCGCTAATGCTCA
Found at i:22176306 original size:39 final size:39
Alignment explanation
Indices: 22176263--22176374 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 39
22176253 TTGTGGCGTT
22176263 TTTTCCATAAACGCCGCTAATGCTCATTTTTAGCGGCAA
1 TTTTCCATAAACGCCGCTAATGCTCATTTTTAGCGGCAA
* * * * *
22176302 TTTTCAAAAAACGCCGCTAATGCTCCATCTTTAGTGGCGA
1 TTTTCCATAAACGCCGCTAATGCT-CATTTTTAGCGGCAA
*
22176342 -TTTCCGTAAAACGCCGCTAATGCTCGATTTTTA
1 TTTTCCAT-AAACGCCGCTAATGCTC-ATTTTTA
22176375 CTGACGTTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
39 27 0.44
40 34 0.56
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (39 bp):
TTTTCCATAAACGCCGCTAATGCTCATTTTTAGCGGCAA
Found at i:22176411 original size:12 final size:12
Alignment explanation
Indices: 22176394--22176418 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22176384 TTAATCCAAA
22176394 CGCCGCTAAAAG
1 CGCCGCTAAAAG
22176406 CGCCGCTAAAAG
1 CGCCGCTAAAAG
22176418 C
1 C
22176419 CTATTTTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.36, G:0.24, T:0.08
Consensus pattern (12 bp):
CGCCGCTAAAAG
Found at i:22184204 original size:18 final size:17
Alignment explanation
Indices: 22184083--22184216 Score: 75
Period size: 18 Copynumber: 8.0 Consensus size: 17
22184073 AATACTAAGA
*
22184083 ATTTTATCAAATTATAT
1 ATTTTATTAAATTATAT
22184100 ATTTTTATTAAA-T-TAT
1 A-TTTTATTAAATTATAT
* *
22184116 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* * *
22184130 ATTTTAAATAATTTTTAT
1 ATTTT-ATTAAATTATAT
* * *
22184148 AGTATTA-TATATTAT-G
1 A-TTTTATTAAATTATAT
*
22184164 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
22184182 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
22184199 ATTTTTATTATATTATAT
1 A-TTTTATTAAATTATAT
22184217 TTAATAATAA
Statistics
Matches: 89, Mismatches: 16, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
13 2 0.02
14 7 0.08
15 8 0.09
16 13 0.15
17 17 0.19
18 39 0.44
19 3 0.03
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:22184421 original size:39 final size:41
Alignment explanation
Indices: 22184367--22184470 Score: 122
Period size: 44 Copynumber: 2.5 Consensus size: 41
22184357 TCCATATGCT
* *
22184367 ATTACACCTCTATTCCATTCAACCAAACACAAGAA-TA-CA
1 ATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTACCA
*
22184406 ATTACGCCTCCATTCCATTCCATTCAACCAAACAAAAGAATTACCT
1 ATTACGCCT-C--T--ATTCCATTCAACCAAACAAAAGAATTACCA
22184452 ATTACGCCTCTATTCCATT
1 ATTACGCCTCTATTCCATT
22184471 ACGCATCTAT
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
39 8 0.15
40 1 0.02
41 8 0.15
42 1 0.02
43 1 0.02
44 23 0.42
45 3 0.05
46 10 0.18
ACGTcount: A:0.37, C:0.32, G:0.04, T:0.28
Consensus pattern (41 bp):
ATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTACCA
Found at i:22184445 original size:44 final size:46
Alignment explanation
Indices: 22184378--22184470 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 46
22184368 TTACACCTCT
*
22184378 ATTCCATTCAACCAAACACAAGAA-TA-CAATTACGCCTCCATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCAATTACGCCTCCATTCC
* *
22184422 ATTCCATTCAACCAAACAAAAGAATTACCTATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCAATTACGCCTCCATTCC
22184468 ATT
1 ATT
22184471 ACGCATCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 23 0.52
45 2 0.05
46 19 0.43
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.27
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAAAAGAATTACCAATTACGCCTCCATTCC
Found at i:22184473 original size:16 final size:16
Alignment explanation
Indices: 22184452--22184504 Score: 88
Period size: 16 Copynumber: 3.3 Consensus size: 16
22184442 AGAATTACCT
22184452 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
22184468 ATTACGCATCTATTCC
1 ATTACGCCTCTATTCC
*
22184484 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
22184500 ATTAC
1 ATTAC
22184505 AGCGAACCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.25, C:0.34, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:22188612 original size:40 final size:40
Alignment explanation
Indices: 22188375--22188598 Score: 287
Period size: 40 Copynumber: 5.6 Consensus size: 40
22188365 TGAATGATGT
* * * *
22188375 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
22188415 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
22188455 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
22188493 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
22188534 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
22188574 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
22188599 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 35 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:22188620 original size:119 final size:119
Alignment explanation
Indices: 22188374--22188631 Score: 301
Period size: 119 Copynumber: 2.2 Consensus size: 119
22188364 TTGAATGATG
* *
22188374 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* * **
22188439 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
22188493 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
22188556 TTGTGCGAGTCACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTCACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
22188613 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
22188632 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 85 0.71
120 31 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:22192940 original size:88 final size:87
Alignment explanation
Indices: 22192844--22193015 Score: 211
Period size: 88 Copynumber: 2.0 Consensus size: 87
22192834 AGGATTATTG
* * * * * *
22192844 GCTTCGATCTGCTTCATTGCCAATACAAGAAAG-CAAGATCTGCTATTTTCAACCTGCTCCGCTG
1 GCTTCGATCTGCTTCACTGCCAATAC-AGAAAGACAAGATCTACAATCTTCAACCTACTCCACTG
22192908 CTGCTCAGGGAGATAAGGCTGGT
65 CTGCTCAGGGAGATAAGGCTGGT
* * ** *
22192931 GCTTCCGATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTACAATCTTGGACCTACTCCATTG
1 GCTT-CGATCTGCTTCACTGCCAATACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTG
*
22192996 TTGCTCAGGGAGATAAGGCT
65 CTGCTCAGGGAGATAAGGCT
22193016 AGTGGCTTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
87 9 0.13
88 62 0.87
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (87 bp):
GCTTCGATCTGCTTCACTGCCAATACAGAAAGACAAGATCTACAATCTTCAACCTACTCCACTGC
TGCTCAGGGAGATAAGGCTGGT
Found at i:22193098 original size:44 final size:44
Alignment explanation
Indices: 22193036--22193629 Score: 166
Period size: 44 Copynumber: 13.5 Consensus size: 44
22193026 ATCTGATTCC
* * * *
22193036 CTACTGTCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCA
1 CTACTG-CCTAGGGAGATAAGATTCGCTGTCTTCAATCTGCTCCA
* * * *
22193081 CTACTGCCTAGGGAGATAAGA-TCTG-TAATTTTCAACCTACTCCA
1 CTACTGCCTAGGGAGATAAGATTC-GCT-GTCTTCAATCTGCTCCA
* ** ** * *
22193125 CTGCTG-CTCAGGGAGATAAGGCT-AATGACTTAAATCTGCTTCC-
1 CTACTGCCT-AGGGAGATAAGATTCGCTGTCTTCAATCTGC-TCCA
* * * * **
22193168 GTACTACCTTGGGAAGATAA-AATCGCTGTCTTTGATCTGCTCCA
1 CTACTGCCTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCA
* ** * * * *
22193212 CTACTGCTTAGGGAGATAAGA-TCTATAATTTTCAACCTACTCCA
1 CTACTGCCTAGGGAGATAAGATTCGCT-GTCTTCAATCTGCTCCA
* * ** * * * * *
22193256 CTGCTG-CTCAAGGAGATAAGGCT-GGTGGCTTAAATCTGCTTCT
1 CTACTGCCT-AGGGAGATAAGATTCGCTGTCTTCAATCTGCTCCA
* * * * ** *
22193299 CTATTGCCTTGGGAAGATAAAATTCACCATCTTCGATCTGCTCCA
1 CTACTGCCTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCA
* * * * *
22193344 CTACTGCTTAGGGAGATAAGA-TCTG-TAATTTTCAACCTACTCCA
1 CTACTGCCTAGGGAGATAAGATTC-GCT-GTCTTCAATCTGCTCCA
** * * *
22193388 CTACTG-CTCAGGGAGATAAGGCTAG-TGGCTTAAATCTGCTTCC-
1 CTACTGCCT-AGGGAGATAAGATTCGCTGTCTTCAATCTGC-TCCA
* * * * * * *
22193431 CTACTGTCTTGGGAAGATAAAATTTGCCGTTTTCGATCTGCTCCA
1 CTACTGCCTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCA
* * * * * *
22193476 CTACTGCTTAGGGAGATAAGA-TCTG-TAATTTTCAACCTACTCTA
1 CTACTGCCTAGGGAGATAAGATTC-GCT-GTCTTCAATCTGCTCCA
* ** * * *
22193520 CTGCTG-CTCAGGGAGATAAGGCT-GGTGGCTTAAATCTGCTTCC-
1 CTACTGCCT-AGGGAGATAAGATTCGCTGTCTTCAATCTGC-TCCA
* * **
22193563 CTACTGCCTTGGGAAGATAAG-TTCGCCGTCTTTGATCTGCTCCA
1 CTACTGCCTAGGG-AGATAAGATTCGCTGTCTTCAATCTGCTCCA
* *
22193607 CTATTGCTTAGGGAGATAAGATT
1 CTACTGCCTAGGGAGATAAGATT
22193630 TGTAATTTTC
Statistics
Matches: 381, Mismatches: 131, Indels: 75
0.65 0.22 0.13
Matches are distributed among these distances:
43 94 0.25
44 237 0.62
45 50 0.13
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (44 bp):
CTACTGCCTAGGGAGATAAGATTCGCTGTCTTCAATCTGCTCCA
Found at i:22193157 original size:132 final size:132
Alignment explanation
Indices: 22192983--22193673 Score: 1062
Period size: 132 Copynumber: 5.2 Consensus size: 132
22192973 ACAATCTTGG
* * * * *
22192983 ACCTACTCCATTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTACTGTCTTAG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* *
22193048 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22193113 CA
131 CA
* * * *
22193115 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCGTACTACCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * *
22193180 GAAGATAAAA-TCGCTGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22193244 CA
131 CA
* * * *
22193246 ACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGGCTTAAATCTGCTTCTCTATTGCCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* *
22193311 GAAGATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22193376 CA
131 CA
* *
22193378 ACCTACTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGTCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* *
22193443 GAAGATAAAATTTGCCGTTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22193508 CA
131 CA
* *
22193510 ACCTACTCTACTGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * * *
22193575 GAAGAT-AAGTTCGCCGTCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATTTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
22193639 CA
131 CA
* * * *
22193641 GCCTACTCCAGTGTTGCTCAAGGAGATAAGGCT
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
22193674 GGAATCTTCG
Statistics
Matches: 506, Mismatches: 52, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
131 201 0.40
132 305 0.60
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (132 bp):
ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
CA
Found at i:22193316 original size:263 final size:264
Alignment explanation
Indices: 22192983--22193673 Score: 1082
Period size: 263 Copynumber: 2.6 Consensus size: 264
22192973 ACAATCTTGG
* * * * * *
22192983 ACCTACTCCATTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTACTGTCTTAG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
*
22193048 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
*
22193113 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCGTACTACCTT
131 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTT
*
22193178 GGGAAGATAAAA-TCGCTGTCTTT-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
196 GGGAAGATAAAATTCGCCGT-TTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
22193241 TTTCA
260 TTTCA
* * *
22193246 ACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGGCTTAAATCTGCTTCTCTATTGCCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * *
22193311 GAAGATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
* * * **
22193376 CAACCTACTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGTCTT
131 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTT
* *
22193441 GGGAAGATAAAATTTGCCGTTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT
196 GGGAAGATAAAATTCGCCGTTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATT
22193506 TTCA
261 TTCA
*
22193510 ACCTACTCTACTGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
1 ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
* * *
22193575 GAAGATAAG-TTCGCCGTCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATTTGTAATTTT
66 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
* * * *
22193639 CAGCCTACTCCAGTGTTGCTCAAGGAGATAAGGCT
131 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
22193674 GGAATCTTCG
Statistics
Matches: 389, Mismatches: 37, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
263 271 0.70
264 118 0.30
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (264 bp):
ACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTTGG
GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTT
GGGAAGATAAAATTCGCCGTTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATT
TTCA
Found at i:22193740 original size:395 final size:394
Alignment explanation
Indices: 22192983--22193758 Score: 1108
Period size: 395 Copynumber: 2.0 Consensus size: 394
22192973 ACAATCTTGG
* **
22192983 ACCTACTCCATTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTACTGTCTTAG
1 ACCTACTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTACTGTCTTAG
*
22193048 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTT
*
22193113 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCGTACTACCTT
131 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTT
*
22193178 GGGAAGATAAAATCGCTGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTT
196 GGGAAGATAAAATCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTT
** * * *
22193243 TCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGTGGCTTAAATCTGCTTCTCTATTGCCT
261 TCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGAAGCTTAAATCTACTTCTCTAGTGAC-
** * * * * *
22193308 TGGGAAGATAAAATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
325 TAAGAAGACAAAATTCACCATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAAT
22193373 TTTCA
390 TTTCA
* *
22193378 ACCTACTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTGTCTTGG
1 ACCTACTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTACTGTCTTAG
* * *
22193443 GAAGATAAAATTTGCCGTTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT
66 GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTT
* ** * *
22193508 CAACCTACTCTACTGCTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTGCCTT
131 CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTT
** * * *
22193573 GGGAAGATAAGTTCGCCGTCTTTGATCTGCTCCACTATTGCTTAGGGAGATAAGATTTGTAATTT
196 GGGAAGATAAAATCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTT
* * * * **
22193638 TCAGCCTACTCCAGTGTTGCTCAAGGAGATAAGGCTGGAATCTTCGATCTACTTCGCTGCTAGT-
261 TCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGAAGCTTAAATCTACTT--CT-CTAGTG
* * *
22193702 AC-AAGAAGACAAGA-TCTGCTATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
323 ACTAAGAAGACAAAATTC-ACCATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
22193759 GCTGATTATC
Statistics
Matches: 335, Mismatches: 42, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
394 2 0.01
395 326 0.97
397 3 0.01
398 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (394 bp):
ACCTACTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGATTCCCTACTGTCTTAG
GAAGATAAAATTCGCCGTCTTCGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGTAATTTT
CAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAATGACTTAAATCTGCTTCCCTACTACCTT
GGGAAGATAAAATCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATTT
TCAACCTACTCCACTGCTGCTCAAGGAGATAAGGCTGGAAGCTTAAATCTACTTCTCTAGTGACT
AAGAAGACAAAATTCACCATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATT
TTCA
Found at i:22197052 original size:25 final size:25
Alignment explanation
Indices: 22197018--22197070 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
22197008 GACGATCGGA
22197018 AGCTGCTTTTTGATTATCCCGAATC
1 AGCTGCTTTTTGATTATCCCGAATC
22197043 AGCTGCTTTTTGATTATCCCGAATC
1 AGCTGCTTTTTGATTATCCCGAATC
22197068 AGC
1 AGC
22197071 CTTACTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.38
Consensus pattern (25 bp):
AGCTGCTTTTTGATTATCCCGAATC
Found at i:22202715 original size:51 final size:50
Alignment explanation
Indices: 22202644--22202879 Score: 276
Period size: 50 Copynumber: 4.7 Consensus size: 50
22202634 CATGCCAAAC
** * * *
22202644 CCATGTCCCAGACATGGTCTTACATGGGATGTTCTTATATCGGTGCCCATA
1 CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATCGGTGCCAATG
* ** * *
22202695 CCATGTCCCAGACATAGTCTTACATGGGATGTTCTTATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATCGGTGCCAATG
** * *
22202746 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAATG
* * * *
22202796 CCGTGTCCCAGGCGTGGTCTTACATGGGACCTCTCATCTCGGTGCCAACT-
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAA-TG
22202846 CCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCT
22202880 TTACCCAAAT
Statistics
Matches: 164, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
50 89 0.54
51 75 0.46
ACGTcount: A:0.19, C:0.30, G:0.23, T:0.28
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAATG
Found at i:22211073 original size:16 final size:16
Alignment explanation
Indices: 22211054--22211100 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
22211044 CGCTGTATTA
22211054 GATTAGAGGTGTAATG
1 GATTAGAGGTGTAATG
22211070 GATTAGAGGTGTAATG
1 GATTAGAGGTGTAATG
*
22211086 GAATAGAGGTGTAAT
1 GATTAGAGGTGTAAT
22211101 AGCAAATCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
GATTAGAGGTGTAATG
Found at i:22211331 original size:16 final size:16
Alignment explanation
Indices: 22211294--22211335 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
22211284 TTAATCATAT
*
22211294 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
22211310 TT-AAATATATTATAA
1 TTAAAATATATTATAA
22211325 TTAAAATATAT
1 TTAAAATATAT
22211336 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:22211342 original size:14 final size:15
Alignment explanation
Indices: 22211303--22211344 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22211293 TTTAAACATA
*
22211303 ATTATTATTAAATAT
1 ATTATAATTAAATAT
22211318 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
22211332 A-TATAATTTAATA
1 ATTATAATTAAATA
22211345 AAAATATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:22211351 original size:16 final size:17
Alignment explanation
Indices: 22211326--22211485 Score: 77
Period size: 18 Copynumber: 9.4 Consensus size: 17
22211316 ATATTATAAT
22211326 TAAAATATATAATTTAA
1 TAAAATATATAATTTAA
22211343 TAAAAATATATAATTTAA
1 T-AAAATATATAATTTAA
*
22211361 TAAAAT-TCTTAATATTAAA
1 TAAAATAT-ATAAT-TT-AA
***
22211380 TATTCTTATATGAATTTAA
1 TA-AAATATAT-AATTTAA
* *
22211399 TAAAAT-CATAATAT-A
1 TAAAATATATAATTTAA
* *
22211414 TAATACTATATAATATAA
1 TAA-AATATATAATTTAA
*
22211432 TTTAAAATA-ATTA-TT-A
1 --TAAAATATATAATTTAA
*
22211448 T-TAA-ATATAATTTAA
1 TAAAATATATAATTTAA
22211463 TAAAAATATATAA-TTAA
1 T-AAAATATATAATTTAA
22211480 TAAAAT
1 TAAAAT
22211486 TCTTAATATT
Statistics
Matches: 107, Mismatches: 18, Indels: 37
0.66 0.11 0.23
Matches are distributed among these distances:
12 1 0.01
13 5 0.05
14 3 0.03
15 6 0.06
16 13 0.12
17 27 0.25
18 30 0.28
19 11 0.10
20 7 0.07
21 4 0.04
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (17 bp):
TAAAATATATAATTTAA
Found at i:22211358 original size:73 final size:69
Alignment explanation
Indices: 22211274--22211484 Score: 177
Period size: 73 Copynumber: 3.0 Consensus size: 69
22211264 TAATATCAAT
*
22211274 AATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAAT
1 AATATATAATTTAAT-A-ATTTAAA-ATAATTATTATTAAATATATT-TAATTAAAATATATAAT
22211339 TTAATAAA
62 TTAATAAA
* * * * *
22211347 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGA-ATTTAA-TAAAAT-CATA
1 AATATATAATTTAAT--AA-T-TTAA-AATAATTATTATTAAAT-ATATTTAATTAAAATATATA
* *
22211409 ATAT-ATAAT
60 ATTTAATAAA
* *
22211418 ACTATATAA--T-ATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAA-TTA
1 AATATATAATTTAATAATTTAAAATAATTATTATTAAATAT-ATTTAATTAAAATATATAATTTA
22211479 ATAAA
65 ATAAA
22211484 A
1 A
22211485 TTCTTAATAT
Statistics
Matches: 110, Mismatches: 18, Indels: 27
0.71 0.12 0.17
Matches are distributed among these distances:
62 1 0.01
63 13 0.12
64 10 0.09
65 7 0.06
66 11 0.10
68 2 0.02
69 1 0.01
71 12 0.11
72 6 0.05
73 21 0.19
74 5 0.05
75 19 0.17
76 2 0.02
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (69 bp):
AATATATAATTTAATAATTTAAAATAATTATTATTAAATATATTTAATTAAAATATATAATTTAA
TAAA
Found at i:22211378 original size:18 final size:18
Alignment explanation
Indices: 22211322--22211365 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
22211312 AAATATATTA
*
22211322 TAATTAAAATATATAATT
1 TAATAAAAATATATAATT
22211340 TAATAAAAATATATAATT
1 TAATAAAAATATATAATT
22211358 TAATAAAA
1 TAATAAAA
22211366 TTCTTAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAATAAAAATATATAATT
Found at i:22211398 original size:56 final size:55
Alignment explanation
Indices: 22211331--22211522 Score: 201
Period size: 55 Copynumber: 3.3 Consensus size: 55
22211321 ATAATTAAAA
22211331 TATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
* * * * *
22211386 TATATGAATTTAATAAAATCATAATATATAATACTATATAATATAAT-TTAA-AATAATTATTAT
1 TATAT-AATTTAAT--AA--A-AATATATAAT-TTA-ATAA-A-ATTCTTAATATTAAATATTCT
22211449 TAAATATAATTTAATAAAAATATATAA-TTAATAAAATTCTTAATATTAAATATTCT
1 T--ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
22211505 TATATGAATTTAATAAAA
1 TATAT-AATTTAATAAAA
22211523 TCATAATATA
Statistics
Matches: 112, Mismatches: 10, Indels: 30
0.74 0.07 0.20
Matches are distributed among these distances:
54 6 0.05
55 22 0.20
56 22 0.20
57 2 0.02
58 2 0.02
59 9 0.08
60 2 0.02
61 10 0.09
62 4 0.04
63 14 0.12
64 13 0.12
65 6 0.05
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (55 bp):
TATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
Found at i:22211498 original size:119 final size:120
Alignment explanation
Indices: 22211332--22211549 Score: 429
Period size: 119 Copynumber: 1.8 Consensus size: 120
22211322 TAATTAAAAT
22211332 ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
1 ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
22211397 AATAAAATCATAATATATAATACTATATAATATAATTTAAAATAATTATTATTAA
66 AATAAAATCATAATATATAATACTATATAATATAATTTAAAATAATTATTATTAA
22211452 ATATAATTTAATAAAAATATATAA-TTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
1 ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
22211516 AATAAAATCATAATATATAATACTATATAATATA
66 AATAAAATCATAATATATAATACTATATAATATA
22211550 GATTAATAAT
Statistics
Matches: 98, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
119 74 0.76
120 24 0.24
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.43
Consensus pattern (120 bp):
ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
AATAAAATCATAATATATAATACTATATAATATAATTTAAAATAATTATTATTAA
Found at i:22219979 original size:12 final size:11
Alignment explanation
Indices: 22219964--22220003 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
22219954 AAGTAAAACC
*
22219964 TAATGTAAATAA
1 TAATATAAAT-A
22219976 TAATATAAATA
1 TAATATAAATA
22219987 TAATAATAAATA
1 TAAT-ATAAATA
22219999 TAATA
1 TAATA
22220004 ATAATAAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 6 0.23
12 20 0.77
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (11 bp):
TAATATAAATA
Found at i:22220004 original size:12 final size:12
Alignment explanation
Indices: 22219969--22220007 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
22219959 AAACCTAATG
22219969 TAAATAATAAT-A
1 TAAAT-ATAATAA
22219981 TAAATATAATAA
1 TAAATATAATAA
22219993 TAAATATAATAA
1 TAAATATAATAA
22220005 TAA
1 TAA
22220008 TAAACCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 5 0.19
12 21 0.81
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAATATAATAA
Found at i:22227163 original size:43 final size:42
Alignment explanation
Indices: 22227116--22227208 Score: 132
Period size: 43 Copynumber: 2.2 Consensus size: 42
22227106 ACATAGATGC
* * *
22227116 CGCTAAAGAACATGACCTTTAGTGGCTCTTTTATCACAAACG
1 CGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAACG
*
22227158 TCGCTAAAGAACATGACCTTTAGCGACGCTTTTTTCACAAACG
1 -CGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAACG
22227201 CAGCTAAA
1 C-GCTAAA
22227209 AATACCGTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.02
43 44 0.98
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (42 bp):
CGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAACG
Found at i:22229260 original size:9 final size:9
Alignment explanation
Indices: 22229246--22229336 Score: 78
Period size: 9 Copynumber: 10.1 Consensus size: 9
22229236 GACCAAGATT
22229246 TAAGTTATG
1 TAAGTTATG
22229255 TAAGTTATG
1 TAAGTTATG
*
22229264 TGAGTTATG
1 TAAGTTATG
22229273 TAAGTTGAAT-
1 TAAGTT--ATG
* * *
22229283 TATGATATA
1 TAAGTTATG
22229292 TAAGTTAT-
1 TAAGTTATG
*
22229300 AAAGTTATG
1 TAAGTTATG
*
22229309 TATGTTATG
1 TAAGTTATG
*
22229318 TGAGTTATG
1 TAAGTTATG
*
22229327 TATGTTATG
1 TAAGTTATG
22229336 T
1 T
22229337 GGAAATTAGT
Statistics
Matches: 65, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
8 9 0.14
9 50 0.77
10 4 0.06
11 2 0.03
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:22229518 original size:111 final size:118
Alignment explanation
Indices: 22229393--22229886 Score: 510
Period size: 121 Copynumber: 4.3 Consensus size: 118
22229383 AAATTGAGTA
* *
22229393 ATTAGTAATGAATTTGAAATATAGGTATTTCA-ACAT-CT-ATA-A-TTATGTA-TAAAATTTA-
1 ATTAGTAATGAATTTGAAATATAGGTATTTCATACATACTAATATAGTTATATATTAAAATATAG
* * ** * * *
22229451 GATTT-GTATTTAGTATTTCAACATTTATAATTATGTATAAAATTTAAAAAGTT
66 GTTTTAATATTTAAAATAT-AATATTTATAATTATGTTTAAAATTTAAAAAGTT
*
22229504 ATTAGTAATGAATTTGAAATATA-G-ATTACATATCCATACTAATATAGGTTATATATTAAAAAT
1 ATTAGTAATGAATTTGAAATATAGGTATTTCATA--CATACTAATATA-GTTATATATT-AAAAT
22229567 ATAGGTTTTAATATTTAAAATATAATATTTATAATTATGTTTAAAATTTAAAAAAAGTT
62 ATAGGTTTTAATATTTAAAATATAATATTTATAATTATGTTTAAAATTT--AAAAAGTT
* * *
22229626 ATTAGTAATGAATTTG-AA-ATA--TA--T-GTA-ATA-T-ATA-GGTGATATATTAAAAATATA
1 ATTAGTAATGAATTTGAAATATAGGTATTTCATACATACTAATATAGTTATATATT-AAAATATA
* **
22229680 GGTTTTAATATTTAAAAATATAAAATAAATAATTATGTTTAAAATTTAAAAAGTT
65 GGTTTTAATATTT-AAAATATAATATTTATAATTATGTTTAAAATTTAAAAAGTT
* *
22229735 ATTAGTAATGAATTTGAAATATAGGTTATAT-ATCCATACTAATATAGGTTATATATTAAAATAT
1 ATTAGTAATGAATTTGAAATATAGG-TATTTCATACATACTAATATA-GTTATATATTAAAATAT
* * * *
22229799 AGGTTTAAAGTTATTTAAAATATAATAATTATAATTATTTTTAAAATTTAAAAACTT
64 AGGTTTTAA--TATTTAAAATATAATATTTATAATTATGTTTAAAATTTAAAAAGTT
22229856 ATTAGTAATGAATTTGAAATATAGGTTATTT
1 ATTAGTAATGAATTTGAAATATAGG-TATTT
22229887 ATTAATAATA
Statistics
Matches: 324, Mismatches: 29, Indels: 50
0.80 0.07 0.12
Matches are distributed among these distances:
109 29 0.09
110 35 0.11
111 56 0.17
112 6 0.02
113 3 0.01
114 8 0.02
115 1 0.00
116 2 0.01
117 11 0.03
118 2 0.01
119 10 0.03
120 47 0.15
121 85 0.26
122 29 0.09
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.43
Consensus pattern (118 bp):
ATTAGTAATGAATTTGAAATATAGGTATTTCATACATACTAATATAGTTATATATTAAAATATAG
GTTTTAATATTTAAAATATAATATTTATAATTATGTTTAAAATTTAAAAAGTT
Found at i:22229569 original size:20 final size:21
Alignment explanation
Indices: 22229544--22229590 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
22229534 TATCCATACT
22229544 AATATAGGTTAT-ATATTAAA
1 AATATAGGTTATAATATTAAA
* *
22229564 AATATAGGTTTTAATATTTAA
1 AATATAGGTTATAATATTAAA
22229585 AATATA
1 AATATA
22229591 ATATTTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (21 bp):
AATATAGGTTATAATATTAAA
Found at i:22229667 original size:20 final size:20
Alignment explanation
Indices: 22229655--22229701 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
22229645 TATATGTAAT
22229655 ATATAGGTGATATATTAAAA
1 ATATAGGTGATATATTAAAA
**
22229675 ATATAGGTTTTAATATTTAAAA
1 ATATAGGTGAT-ATA-TTAAAA
22229697 ATATA
1 ATATA
22229702 AAATAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
21 3 0.13
22 11 0.48
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (20 bp):
ATATAGGTGATATATTAAAA
Found at i:22229679 original size:110 final size:109
Alignment explanation
Indices: 22229545--22229767 Score: 367
Period size: 109 Copynumber: 2.0 Consensus size: 109
22229535 ATCCATACTA
* * **
22229545 ATATAGGTTATATATTAAAAATATAGGTTTTAATATTT-AAAATATAATATTTATAATTATGTTT
1 ATATAGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATATAAAATAAATAATTATGTTT
*
22229609 AAAATTTAAAAAAAGTTATTAGTAATGAATTTGAAATATATGTAAT
66 AAAATTT--AAAAAGTTATTAGTAATGAATTTGAAATATAGGTAAT
22229655 ATATAGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATATAAAATAAATAATTATGTTT
1 ATATAGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATATAAAATAAATAATTATGTTT
*
22229720 AAAATTTAAAAAGTTATTAGTAATGAATTTGAAATATAGGTTAT
66 AAAATTTAAAAAGTTATTAGTAATGAATTTGAAATATAGGTAAT
22229764 ATAT
1 ATAT
22229768 CCATACTAAT
Statistics
Matches: 106, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
109 39 0.37
110 37 0.35
111 30 0.28
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (109 bp):
ATATAGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATATAAAATAAATAATTATGTTT
AAAATTTAAAAAGTTATTAGTAATGAATTTGAAATATAGGTAAT
Found at i:22229948 original size:209 final size:217
Alignment explanation
Indices: 22229490--22230002 Score: 681
Period size: 209 Copynumber: 2.3 Consensus size: 217
22229480 ATTATGTATA
* *
22229490 AAATTTAAAAAGTTATTAGTAATGAATTTGAAATATAGATTACATATCCATACTAATATAGGTTA
1 AAATTTAAAAAGTTATTAGTAATGAATTTGAAATATAGGTTATATATCCATACTAATATAGGTTA
* *
22229555 TATATTAAAAATATAGGTTTTAATATTTAAAATATAATATTTATAATTATGTTTAAAATTTAAAA
66 TATATT-AAAATATAGGTTTAAATATTTAAAATATAATAATTATAATTATGTTTAAAATTT-AAA
*
22229620 AAAGTTATTAGTAATGAATTTGAAATATATGTAATATATAGGTGATATATTAAAAATATAGGTTT
129 AAACTTATTAGTAATGAATTTGAAATATATG--A-ATATA-GT-ATATATTAAAAATATAGGTTT
22229685 TAATATTTAAAAATATAAAATAAATAATTATGTTT
189 TAATATTTAAAAATAT-AAAT-AAT-ATTA---TT
22229720 AAAATTTAAAAAGTTATTAGTAATGAATTTGAAATATAGGTTATATATCCATACTAATATAGGTT
1 -AAATTTAAAAAGTTATTAGTAATGAATTTGAAATATAGGTTATATATCCATACTAATATAGGTT
*
22229785 ATATATTAAAATATAGGTTTAAAGTTATTTAAAATATAATAATTATAATTATTTTTAAAATTT-A
65 ATATATTAAAATATAGGTTTAAA--TATTTAAAATATAATAATTATAATTATGTTTAAAATTTAA
* *
22229849 AAAACTTATTAGTAATGAATTTGAAATATA-G-GT-TA-T-T-TATTAATAATATAGGTTTTAAG
128 AAAACTTATTAGTAATGAATTTGAAATATATGAATATAGTATATATTAAAAATATAGGTTTTAA-
22229908 TTATTTAAAAATAT-AAT-AT-TTA-T
192 -TATTTAAAAATATAAATAATATTATT
* *
22229931 -AATTTAAAAATTTATTAGTAATGAATTTGAAATATAGGTTATATATTCATACTAATATAGGTTA
1 AAATTTAAAAAGTTATTAGTAATGAATTTGAAATATAGGTTATATATCCATACTAATATAGGTTA
*
22229995 CATATTAA
66 TATATTAA
22230003 TTACTCAAAG
Statistics
Matches: 267, Mismatches: 11, Indels: 30
0.87 0.04 0.10
Matches are distributed among these distances:
209 69 0.26
211 1 0.00
215 3 0.01
217 2 0.01
219 23 0.09
220 1 0.00
221 13 0.05
222 1 0.00
224 2 0.01
225 1 0.00
229 1 0.00
230 45 0.17
231 69 0.26
232 36 0.13
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.42
Consensus pattern (217 bp):
AAATTTAAAAAGTTATTAGTAATGAATTTGAAATATAGGTTATATATCCATACTAATATAGGTTA
TATATTAAAATATAGGTTTAAATATTTAAAATATAATAATTATAATTATGTTTAAAATTTAAAAA
ACTTATTAGTAATGAATTTGAAATATATGAATATAGTATATATTAAAAATATAGGTTTTAATATT
TAAAAATATAAATAATATTATT
Found at i:22232927 original size:19 final size:19
Alignment explanation
Indices: 22232903--22232939 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22232893 GCATGACCTC
22232903 TATATGCACCTGAACGATG
1 TATATGCACCTGAACGATG
*
22232922 TATATGTACCTGAACGAT
1 TATATGCACCTGAACGAT
22232940 AATATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (19 bp):
TATATGCACCTGAACGATG
Found at i:22234973 original size:18 final size:17
Alignment explanation
Indices: 22234947--22234981 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
22234937 AATATTAAGA
*
22234947 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
22234964 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
22234982 TTAATAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:22234981 original size:120 final size:120
Alignment explanation
Indices: 22234831--22235123 Score: 437
Period size: 120 Copynumber: 2.4 Consensus size: 120
22234821 ATTAAATAAG
* * *
22234831 TATTGAAAATATATATTTT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTCATAG
1 TATT-AAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAG
* * * *
22234895 TATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAA-TATTAAGAATTT
65 TATCATATATTATGATTTCAGAAAATTAATATAAAAATA-TTAATTATTAAGAATTT
* * *
22234951 TATTAAATTATATATTTTAATTAAAATATATTTAATAGTAATTATGTTAATTTATATTTTACAGT
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGT
*
22235016 ATCATATATTATGATTTCAGTAAATTAATATAAAAATATTAATTATTAAGAATTT
66 ATCATATATTATGATTTCAGAAAATTAATATAAAAATATTAATTATTAAGAATTT
*
22235071 TATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTTTAAAT
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
22235124 ATGATTAAAT
Statistics
Matches: 156, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
119 17 0.11
120 134 0.86
121 5 0.03
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (120 bp):
TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTCACAGT
ATCATATATTATGATTTCAGAAAATTAATATAAAAATATTAATTATTAAGAATTT
Found at i:22235095 original size:18 final size:17
Alignment explanation
Indices: 22235067--22235101 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
22235057 ATTATTAAGA
*
22235067 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
22235084 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
22235102 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:22235101 original size:16 final size:16
Alignment explanation
Indices: 22235067--22235121 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
22235057 ATTATTAAGA
22235067 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
22235084 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
22235100 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
22235114 ATGTTTAA
1 AT-TTTAA
22235122 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:22235358 original size:16 final size:16
Alignment explanation
Indices: 22235337--22235388 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
22235327 GATTTGCTAT
22235337 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
22235353 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
22235369 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
22235385 TACA
1 TACA
22235389 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:22236842 original size:125 final size:125
Alignment explanation
Indices: 22236702--22237081 Score: 589
Period size: 125 Copynumber: 3.0 Consensus size: 125
22236692 CGTTTTCAAT
* * * * *
22236702 AAAAACGCCACTAAAAAATTAATTTCCTATAACGAAACAGCACCATTTTGCACAATTTTTAATAC
1 AAAAATGCCACTAAAAAATTAATTTCCTGTAACCAAACAGCACCGTTTTGTACAATTTTTAATAC
** * *
22236767 ACAGTTGCGGCGTTTTTAGACCAAACGCCACTATTGCTTACCTTTTGCGGCATTTCTGAG
66 ATTGTTGCGGCGTTTTTAGACCAAACGCCGCTATTGCTTACCTTTTGCGGCGTTTCTGAG
* * * *
22236827 AAAAATGCCACTAAAAATTTAATTTCCTGTAACTAAACAACGCCGTTTTGTACAATTTTTAATAC
1 AAAAATGCCACTAAAAAATTAATTTCCTGTAACCAAACAGCACCGTTTTGTACAATTTTTAATAC
*
22236892 ATTGTTGCGGCGTTTTTAGACCAAACGCCGCTATTGCTTACCTTTTGCGGCGTTTTTGAG
66 ATTGTTGCGGCGTTTTTAGACCAAACGCCGCTATTGCTTACCTTTTGCGGCGTTTCTGAG
* * *
22236952 AAAAATGCCACTAAAAAATTAAATTCCTGTAACCAAACGGCACCGTCTTGTACAATTTTTAATAC
1 AAAAATGCCACTAAAAAATTAATTTCCTGTAACCAAACAGCACCGTTTTGTACAATTTTTAATAC
* *
22237017 ATTGTTGCGGCGTTTTTTGTCCAAACGCCGCTATTGCTTACCTTTTGCGGCGTTTCTGAG
66 ATTGTTGCGGCGTTTTTAGACCAAACGCCGCTATTGCTTACCTTTTGCGGCGTTTCTGAG
22237077 AAAAA
1 AAAAA
22237082 CACCGCTAAT
Statistics
Matches: 232, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
125 232 1.00
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (125 bp):
AAAAATGCCACTAAAAAATTAATTTCCTGTAACCAAACAGCACCGTTTTGTACAATTTTTAATAC
ATTGTTGCGGCGTTTTTAGACCAAACGCCGCTATTGCTTACCTTTTGCGGCGTTTCTGAG
Found at i:22238366 original size:31 final size:30
Alignment explanation
Indices: 22238331--22238390 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
22238321 GGAGGTGGGA
*
22238331 TGGGAAGAGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGAGAATAAAAATTTTAGGGGAAAAG
* * *
22238362 TGGGAGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGAGAATAAAAATTTTAGGGGAAAA
22238391 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (30 bp):
TGGGAGAGAATAAAAATTTTAGGGGAAAAG
Found at i:22238618 original size:9 final size:9
Alignment explanation
Indices: 22238604--22238640 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
22238594 TATAGTTTGA
22238604 TATTCGAAT
1 TATTCGAAT
22238613 TATTCGAAT
1 TATTCGAAT
*
22238622 TATTCGAGT
1 TATTCGAAT
22238631 TATTCGAAT
1 TATTCGAAT
22238640 T
1 T
22238641 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:22238715 original size:18 final size:18
Alignment explanation
Indices: 22238692--22238726 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
22238682 AATCGAGTTG
22238692 ATTCGAATAACTCGATTA
1 ATTCGAATAACTCGATTA
22238710 ATTCGAATAACTCGATT
1 ATTCGAATAACTCGATT
22238727 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (18 bp):
ATTCGAATAACTCGATTA
Found at i:22238866 original size:7 final size:7
Alignment explanation
Indices: 22238854--22238960 Score: 83
Period size: 7 Copynumber: 15.6 Consensus size: 7
22238844 AAAAACCTCT
22238854 TAAACCC
1 TAAACCC
22238861 TAAA-CC
1 TAAACCC
*
22238867 TAAACCG
1 TAAACCC
*
22238874 TAAACAC
1 TAAACCC
*
22238881 TAAACTC
1 TAAACCC
* *
22238888 TTAACAC
1 TAAACCC
* *
22238895 TAAATCA
1 TAAACCC
22238902 TAAACCC
1 TAAACCC
22238909 TAAACCC
1 TAAACCC
*
22238916 TAAACCT
1 TAAACCC
22238923 TAAACCC
1 TAAACCC
* *
22238930 CAAACCA
1 TAAACCC
*
22238937 TAAA-CA
1 TAAACCC
*
22238943 TACACCC
1 TAAACCC
*
22238950 TAAACCT
1 TAAACCC
22238957 TAAA
1 TAAA
22238961 TTTATATATT
Statistics
Matches: 77, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
6 11 0.14
7 66 0.86
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.19
Consensus pattern (7 bp):
TAAACCC
Done.