Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 82 of 189
Found at i:22740696 original size:101 final size:101
Alignment explanation
Indices: 22740581--22740819 Score: 415
Period size: 101 Copynumber: 2.4 Consensus size: 101
22740571 AAAGTGATGG
* * *
22740581 TCACGTTTGTAGTACTATGTGTAGGTTACTACGTGTACCAGAATGATAAGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAAAATGATAAGTCGCATGTGTAGTAC
*
22740646 TATGTGCAGGCTACTATGCGTATCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* *
22740682 TCACGTGTGTAGTACTATGCGTAGGCTACTACGTGTACCAAAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAAAATGATAAGTCGCATGTGTAGTAC
22740747 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
*
22740783 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTA
22740820 TCGGATAGTG
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 130 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAAAATGATAAGTCGCATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:22740843 original size:51 final size:52
Alignment explanation
Indices: 22740573--22740846 Score: 244
Period size: 51 Copynumber: 5.4 Consensus size: 52
22740563 TGAAAGTGAA
* * * * *
22740573 AGTGAT-GGTCACGTTTGTAGTACTATGTGTAGGTTACTACGTGTACCAGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * *
22740623 A-TGATAAGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * * *
22740674 AGCT--TCGATCACGTGTGTAGTACTATGCGTAGGCTACTACGTGTACC--AA
1 AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * *
22740723 AATGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * *
22740775 AGCT--TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
1 AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
22740826 AGTGAT-GGTCACATGTGTAGT
1 AGTGATAGGTCACATGTGTAGT
22740847 GTAGTACTAT
Statistics
Matches: 172, Mismatches: 41, Indels: 21
0.74 0.18 0.09
Matches are distributed among these distances:
48 1 0.01
49 6 0.03
50 71 0.41
51 89 0.52
52 3 0.02
53 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (52 bp):
AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
Found at i:22740988 original size:42 final size:43
Alignment explanation
Indices: 22740881--22741088 Score: 257
Period size: 43 Copynumber: 4.9 Consensus size: 43
22740871 GTGAATCCGC
*
22740881 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTAATTCCACCGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* * *
22740924 ATCATT-AACTGTGAAAGG-GGTTGCTATGTGCTGATTCC-CCGC
1 ATCATTGAA-TAT-AAAGGTGGTTGCTAAGTGCTGATTCCACCGT
22740966 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* * * *
22741009 ATCCTTGACTGTGAAAGG-GGTTGCTATGTGCTGATTCC-CCGT
1 ATCATTGAATAT-AAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* *
22741051 ATCATTGATTAT-AAGGTGGTTGCTAAGTGTTGATTCCA
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCA
22741089 TCGTGTAACG
Statistics
Matches: 141, Mismatches: 16, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
40 4 0.03
41 23 0.16
42 45 0.32
43 59 0.42
44 10 0.07
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
Found at i:22741020 original size:85 final size:85
Alignment explanation
Indices: 22740877--22741088 Score: 363
Period size: 85 Copynumber: 2.5 Consensus size: 85
22740867 CTATGTGAAT
*
22740877 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTAATTCCACCGTATCATTAACTGTGAAAGG
1 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTAACTGTGAAAGG
22740942 GGTTGCTATGTGCTGATTCC
66 GGTTGCTATGTGCTGATTCC
* *
22740962 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGACTGTGAAAGG
1 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTAACTGTGAAAGG
22741027 GGTTGCTATGTGCTGATTCC
66 GGTTGCTATGTGCTGATTCC
* * *
22741047 CCGTATCATTGATTAT-AAGGTGGTTGCTAAGTGTTGATTCCA
1 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCA
22741089 TCGTGTAACG
Statistics
Matches: 121, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
84 25 0.21
85 96 0.79
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (85 bp):
CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTAACTGTGAAAGG
GGTTGCTATGTGCTGATTCC
Found at i:22748828 original size:23 final size:23
Alignment explanation
Indices: 22748796--22748839 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
22748786 CCTAGGTCAG
*
22748796 GTATTGGGGTATTACATTTAGTT
1 GTATTAGGGTATTACATTTAGTT
22748819 GTATTAGGGTATTACATTTAG
1 GTATTAGGGTATTACATTTAG
22748840 GGGACCCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.45
Consensus pattern (23 bp):
GTATTAGGGTATTACATTTAGTT
Found at i:22753448 original size:16 final size:16
Alignment explanation
Indices: 22753427--22753457 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22753417 GAGTACACCA
22753427 CATCACTCTACTAGCT
1 CATCACTCTACTAGCT
*
22753443 CATCACTTTACTAGC
1 CATCACTCTACTAGC
22753458 AGGGTGGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.35, G:0.06, T:0.32
Consensus pattern (16 bp):
CATCACTCTACTAGCT
Found at i:22753516 original size:32 final size:32
Alignment explanation
Indices: 22753475--22753547 Score: 112
Period size: 32 Copynumber: 2.3 Consensus size: 32
22753465 GGAGCTAGAG
*
22753475 AGTGGCAAGTTGGCGAGGAGGCGAGA-TAGCAA
1 AGTGGCAAGTTAGCGAGGAGGCGA-ACTAGCAA
22753507 AGTGGCAAGTTAGCGAGGAGGCGAACTAGCAA
1 AGTGGCAAGTTAGCGAGGAGGCGAACTAGCAA
*
22753539 AATGGCAAG
1 AGTGGCAAG
22753548 CTAGAAAGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 1 0.03
32 37 0.97
ACGTcount: A:0.34, C:0.14, G:0.40, T:0.12
Consensus pattern (32 bp):
AGTGGCAAGTTAGCGAGGAGGCGAACTAGCAA
Found at i:22753628 original size:16 final size:16
Alignment explanation
Indices: 22753596--22753699 Score: 75
Period size: 16 Copynumber: 6.5 Consensus size: 16
22753586 AAATGGTGAC
*
22753596 GAGCTAGC-AGAGTGGT
1 GAGCTAGCGAG-GAGGT
*
22753612 GAGGTAGCGAGGAGGT
1 GAGCTAGCGAGGAGGT
* * * *
22753628 GAGCTAGCAAAGTGGC
1 GAGCTAGCGAGGAGGT
*
22753644 GAGCTAGCGAGGAGGC
1 GAGCTAGCGAGGAGGT
* * *
22753660 AAGCTAGCAATGAGGT
1 GAGCTAGCGAGGAGGT
* * *
22753676 GAGCTAACAAGGAGGC
1 GAGCTAGCGAGGAGGT
22753692 GAGCTAGC
1 GAGCTAGC
22753700 AGAGAGTGGC
Statistics
Matches: 68, Mismatches: 19, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
16 66 0.97
17 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.42, T:0.12
Consensus pattern (16 bp):
GAGCTAGCGAGGAGGT
Found at i:22753632 original size:32 final size:32
Alignment explanation
Indices: 22753595--22753703 Score: 130
Period size: 32 Copynumber: 3.4 Consensus size: 32
22753585 TAAATGGTGA
*
22753595 CGAGCTAGCAGAGTGGTGAGGTAGCGAGGAGG
1 CGAGCTAGCAGAGTGGTGAGCTAGCGAGGAGG
* * *
22753627 TGAGCTAGCAAAGTGGCGAGCTAGCGAGGAGG
1 CGAGCTAGCAGAGTGGTGAGCTAGCGAGGAGG
* * * *
22753659 CAAGCTAGCA-ATGAGGTGAGCTAACAAGGAGG
1 CGAGCTAGCAGA-GTGGTGAGCTAGCGAGGAGG
22753691 CGAGCTAGCAGAG
1 CGAGCTAGCAGAG
22753704 AGTGGCAAGC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
31 1 0.02
32 62 0.97
33 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.42, T:0.12
Consensus pattern (32 bp):
CGAGCTAGCAGAGTGGTGAGCTAGCGAGGAGG
Found at i:22753649 original size:48 final size:48
Alignment explanation
Indices: 22753494--22753712 Score: 122
Period size: 48 Copynumber: 4.5 Consensus size: 48
22753484 TTGGCGAGGA
* * * * * *
22753494 GGCGAGATAGCAAAGTGGCAAGTTAGCGAGGAGGCGAACTAGCAAAAT
1 GGCGAGCTAGCAGAGTGGCAAGGTAGCGAGGAGGTGAGCTAGCAAAGT
* * ** * * *
22753542 GGCAAGCTAG-AAAGTGG-TGGGCTAG-GAGATAGTGATTAGCTAGTAAATGGT
1 GGCGAGCTAGCAGAGTGGCAAGG-TAGCGAG-GAG-G-TGAGCTAGCAAA--GT
* **
22753593 GACGAGCTAGCAGAGTGGTGAGGTAGCGAGGAGGTGAGCTAGCAAAGT
1 GGCGAGCTAGCAGAGTGGCAAGGTAGCGAGGAGGTGAGCTAGCAAAGT
* * * * * * *
22753641 GGCGAGCTAGC-GAGGAGGCAAGCTAGCAATGAGGTGAGCTAACAAGGA
1 GGCGAGCTAGCAGA-GTGGCAAGGTAGCGAGGAGGTGAGCTAGCAAAGT
22753689 GGCGAGCTAGCAGAGAGTGGCAAG
1 GGCGAGCTAGC--AGAGTGGCAAG
22753713 CTAGTAGAGT
Statistics
Matches: 128, Mismatches: 30, Indels: 24
0.70 0.16 0.13
Matches are distributed among these distances:
46 4 0.03
47 14 0.11
48 57 0.45
49 8 0.06
50 17 0.13
51 12 0.09
52 11 0.09
53 5 0.04
ACGTcount: A:0.32, C:0.13, G:0.40, T:0.15
Consensus pattern (48 bp):
GGCGAGCTAGCAGAGTGGCAAGGTAGCGAGGAGGTGAGCTAGCAAAGT
Found at i:22753723 original size:16 final size:16
Alignment explanation
Indices: 22753702--22753737 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
22753692 GAGCTAGCAG
*
22753702 AGAGTGGCAAGCTAGT
1 AGAGTGGCAAGCTACT
*
22753718 AGAGTGGCGAGCTACT
1 AGAGTGGCAAGCTACT
22753734 AGAG
1 AGAG
22753738 AGTCGCGAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.39, T:0.17
Consensus pattern (16 bp):
AGAGTGGCAAGCTACT
Found at i:22753739 original size:18 final size:18
Alignment explanation
Indices: 22753689--22753746 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
22753679 CTAACAAGGA
22753689 GGCGAGCTAGC-AGAGAGT
1 GGCGAGCTA-CTAGAGAGT
* *
22753707 GGCAAGCTAGT--AGAGT
1 GGCGAGCTACTAGAGAGT
22753723 GGCGAGCTACTAGAGAGT
1 GGCGAGCTACTAGAGAGT
*
22753741 CGCGAG
1 GGCGAG
22753747 GTGGTGTCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 14 0.44
18 18 0.56
ACGTcount: A:0.28, C:0.17, G:0.41, T:0.14
Consensus pattern (18 bp):
GGCGAGCTACTAGAGAGT
Found at i:22755148 original size:17 final size:16
Alignment explanation
Indices: 22755126--22755238 Score: 66
Period size: 18 Copynumber: 6.3 Consensus size: 16
22755116 AAATATTTAG
22755126 AAAAATATAGAAATTGT
1 AAAAATATA-AAATTGT
* *
22755143 AAAAATATTTAAATTATT
1 AAAAATA-TAAAATT-GT
22755161 AAAAATATCAAAATTTGT
1 AAAAATAT-AAAA-TTGT
*
22755179 AAAAATA-AATATTGT
1 AAAAATATAAAATTGT
*
22755194 AAATAATAATTAAATATTTTT
1 AAA-AAT-A-TAAA-A-TTGT
22755215 AAAAATATTTTAAAATTGT
1 AAAAATA---TAAAATTGT
22755234 AAAAA
1 AAAAA
22755239 AGTTATTGAA
Statistics
Matches: 76, Mismatches: 8, Indels: 22
0.72 0.08 0.21
Matches are distributed among these distances:
15 7 0.09
16 6 0.08
17 14 0.18
18 20 0.26
19 13 0.17
20 5 0.07
21 11 0.14
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.37
Consensus pattern (16 bp):
AAAAATATAAAATTGT
Found at i:22755220 original size:54 final size:52
Alignment explanation
Indices: 22755138--22755256 Score: 127
Period size: 54 Copynumber: 2.3 Consensus size: 52
22755128 AAATATAGAA
*
22755138 ATTGTAAA-AAT-ATTTAAATTATTAAAAATA-TCAAAATTTGTAAAAATAAAT
1 ATTGTAAATAATAATTAAAATTATTAAAAATATTCAAAA-TTGTAAAAA-AAAT
* * **
22755189 ATTGTAAATAATAATTAAATATTTTTAAAAATATTTTAAAATTGTAAAAAAGTT
1 ATTGTAAATAATAATTAAA-ATTATTAAAAATA-TTCAAAATTGTAAAAAAAAT
*
22755243 ATTGAAAATAATAA
1 ATTGTAAATAATAA
22755257 AACATTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
51 8 0.14
52 3 0.05
53 5 0.09
54 27 0.47
55 9 0.16
56 5 0.09
ACGTcount: A:0.55, C:0.01, G:0.05, T:0.39
Consensus pattern (52 bp):
ATTGTAAATAATAATTAAAATTATTAAAAATATTCAAAATTGTAAAAAAAAT
Found at i:22755238 original size:20 final size:20
Alignment explanation
Indices: 22755184--22755239 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
22755174 TTTGTAAAAA
*
22755184 TAAATATTGTAAATAATAAT
1 TAAATATTGTAAAAAATAAT
* * *
22755204 TAAATATTTTTAAAAATATTT
1 TAAATATTGTAAAAAATA-AT
22755225 TAAA-ATTGTAAAAAA
1 TAAATATTGTAAAAAA
22755240 GTTATTGAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
20 24 0.83
21 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (20 bp):
TAAATATTGTAAAAAATAAT
Found at i:22755620 original size:20 final size:19
Alignment explanation
Indices: 22755565--22755722 Score: 67
Period size: 20 Copynumber: 8.2 Consensus size: 19
22755555 ATTTGCAATT
22755565 TTTTTAATAATTTTTATAAA
1 TTTTTAATAATTTTTAT-AA
* * *
22755585 TTTTAAAAAATGTTTTGTAA
1 TTTTTAATAAT-TTTTATAA
*
22755605 TTTTTAATAACTTTTTTTAAA
1 TTTTTAATAA-TTTTTAT-AA
* * * *
22755626 ATTTTAAGTTATTTTCAACAA
1 TTTTTAA-TAATTTT-TATAA
* **
22755647 TATTTAATAATTATTTGCAA
1 TTTTTAATAATT-TTTATAA
*
22755667 -TATT--TAATTTTTATAA
1 TTTTTAATAATTTTTATAA
22755683 TTTTTAAT--TTTTTAATAA
1 TTTTTAATAATTTTT-ATAA
* * *
22755701 -TTTAAATATTTTTTACAA
1 TTTTTAATAATTTTTATAA
22755719 TTTT
1 TTTT
22755723 ATATTTTTTA
Statistics
Matches: 102, Mismatches: 23, Indels: 27
0.67 0.15 0.18
Matches are distributed among these distances:
16 5 0.05
17 19 0.19
18 7 0.07
19 11 0.11
20 31 0.30
21 27 0.26
22 2 0.02
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTTAATAATTTTTATAA
Found at i:22755631 original size:21 final size:19
Alignment explanation
Indices: 22755566--22755736 Score: 67
Period size: 21 Copynumber: 9.1 Consensus size: 19
22755556 TTTGCAATTT
22755566 TTTTAATAATTTTTATAAA
1 TTTTAATAATTTTTATAAA
* * *
22755585 TTTTAAAAAATGTTTTGTAAT
1 TTTT-AATAAT-TTTTATAAA
*
22755606 TTTTAATAACTTTTTTTAAAA
1 TTTTAATAA-TTTTTAT-AAA
* *
22755627 TTTTAAGTTATTTTCA-ACAA
1 TTTTAA-TAATTTTTATA-AA
**
22755647 TATTTAATAATTATTT-GCAA
1 T-TTTAATAATT-TTTATAAA
* *
22755667 TATT--TAATTTTTATAAT
1 TTTTAATAATTTTTATAAA
22755684 TTTTAAT--TTTTTA-ATAA
1 TTTTAATAATTTTTATA-AA
*
22755701 TTTAAAT-ATTTTT-TACAA
1 TTTTAATAATTTTTATA-AA
*
22755719 TTTT-ATATTTTTTA-AAA
1 TTTTAATAATTTTTATAAA
22755736 T
1 T
22755737 ATTTTTTATG
Statistics
Matches: 113, Mismatches: 22, Indels: 36
0.66 0.13 0.21
Matches are distributed among these distances:
16 4 0.04
17 27 0.24
18 17 0.15
19 8 0.07
20 24 0.21
21 31 0.27
22 2 0.02
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTTAATAATTTTTATAAA
Found at i:22755690 original size:16 final size:15
Alignment explanation
Indices: 22755669--22755698 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
22755659 ATTTGCAATA
22755669 TTTAATTTTTATAATT
1 TTTAATTTTT-TAATT
22755685 TTTAATTTTTTAAT
1 TTTAATTTTTTAAT
22755699 AATTTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTAATTTTTTAATT
Found at i:22755694 original size:17 final size:18
Alignment explanation
Indices: 22755674--22755755 Score: 69
Period size: 19 Copynumber: 4.6 Consensus size: 18
22755664 CAATATTTAA
22755674 TTTTTATAATTTTTA-AT
1 TTTTTATAATTTTTATAT
**
22755691 TTTTTAATAATTTAAATAT
1 TTTTT-ATAATTTTTATAT
*
22755710 TTTTTACAA-TTTTATAT
1 TTTTTATAATTTTTATAT
* *
22755727 TTTTTAAAATATTTTTTAT
1 TTTTTATAAT-TTTTATAT
**
22755746 GATTTATAAT
1 TTTTTATAAT
22755756 AAAAATTTTA
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
17 19 0.37
18 11 0.22
19 21 0.41
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (18 bp):
TTTTTATAATTTTTATAT
Found at i:22757272 original size:26 final size:26
Alignment explanation
Indices: 22757215--22757265 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
22757205 AAAAAACCTT
* *
22757215 AAAAATCT-TTAAAAATGGAAAAATA
1 AAAAATTTATTAAAAATAGAAAAATA
22757240 AAAAATTTATTAAAAATAGAAAAATA
1 AAAAATTTATTAAAAATAGAAAAATA
22757266 TGAAATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (26 bp):
AAAAATTTATTAAAAATAGAAAAATA
Found at i:22762503 original size:20 final size:20
Alignment explanation
Indices: 22762480--22762555 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 20
22762470 TACTTTCCTA
*
22762480 CTCCTGTTAGCACTATGGTG
1 CTCCTGATAGCACTATGGTG
* * * *
22762500 CTCCTGATAGTACTTTCGTA
1 CTCCTGATAGCACTATGGTG
* * **
22762520 CTCTTGTTAGCACTACAGTG
1 CTCCTGATAGCACTATGGTG
22762540 CTCCTGATAGCA-TATG
1 CTCCTGATAGCACTATG
22762556 CATGCTTCTA
Statistics
Matches: 40, Mismatches: 16, Indels: 1
0.70 0.28 0.02
Matches are distributed among these distances:
19 2 0.05
20 38 0.95
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (20 bp):
CTCCTGATAGCACTATGGTG
Found at i:22762512 original size:80 final size:80
Alignment explanation
Indices: 22762376--22762544 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 80
22762366 ATCTTGAATA
* ** * * *
22762376 GGTGCTCCTGACAGTACTTTTGTGCTCCTGATAGCATTACGGTGTTCCTAAAAGTACTTTCATAC
1 GGTGCTCCTAACAGTACTTTCCTACTCCTGATAGCACTACGGTGCTCCTAAAAGTACTTTCATAC
22762441 CCTTGATAGCACCAC
66 CCTTGATAGCACCAC
* * * * *
22762456 GGTGCTCCTAACAGTACTTTCCTACTCCTGTTAGCACTATGGTGCTCCTGATAGTACTTTCGTAC
1 GGTGCTCCTAACAGTACTTTCCTACTCCTGATAGCACTACGGTGCTCCTAAAAGTACTTTCATAC
* * *
22762521 TCTTGTTAGCACTAC
66 CCTTGATAGCACCAC
*
22762536 AGTGCTCCT
1 GGTGCTCCT
22762545 GATAGCATAT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.34
Consensus pattern (80 bp):
GGTGCTCCTAACAGTACTTTCCTACTCCTGATAGCACTACGGTGCTCCTAAAAGTACTTTCATAC
CCTTGATAGCACCAC
Found at i:22762549 original size:40 final size:40
Alignment explanation
Indices: 22762376--22762546 Score: 182
Period size: 40 Copynumber: 4.3 Consensus size: 40
22762366 ATCTTGAATA
* * *
22762376 GGTGCTCCTGACAGTACTTTTGTGCTCCTGATAGCATTAC
1 GGTGCTCCTGACAGTACTTTCGTACTCCTGATAGCACTAC
* * * * *
22762416 GGTGTTCCTAAAAGTACTTTCATAC-CCTTGATAGCACCAC
1 GGTGCTCCTGACAGTACTTTCGTACTCC-TGATAGCACTAC
* * * *
22762456 GGTGCTCCTAACAGTACTTTCCTACTCCTGTTAGCACTAT
1 GGTGCTCCTGACAGTACTTTCGTACTCCTGATAGCACTAC
* * *
22762496 GGTGCTCCTGATAGTACTTTCGTACTCTTGTTAGCACTAC
1 GGTGCTCCTGACAGTACTTTCGTACTCCTGATAGCACTAC
*
22762536 AGTGCTCCTGA
1 GGTGCTCCTGA
22762547 TAGCATATGC
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 2 0.02
40 105 0.96
41 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (40 bp):
GGTGCTCCTGACAGTACTTTCGTACTCCTGATAGCACTAC
Found at i:22762626 original size:20 final size:20
Alignment explanation
Indices: 22762601--22762679 Score: 79
Period size: 20 Copynumber: 4.0 Consensus size: 20
22762591 ATTATGGTTT
*
22762601 CCTGATTGCACTTTTGTGCC
1 CCTGATTGCACTTTAGTGCC
* *
22762621 CCTGATTGCACTTCAGTGTC
1 CCTGATTGCACTTTAGTGCC
* *
22762641 ACTGATTGCACTTT-GTTCC
1 CCTGATTGCACTTTAGTGCC
* * *
22762660 CTTGATTTCTCTTTAGTGCC
1 CCTGATTGCACTTTAGTGCC
22762680 TCCGTAAGCA
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
19 13 0.28
20 33 0.72
ACGTcount: A:0.13, C:0.28, G:0.18, T:0.42
Consensus pattern (20 bp):
CCTGATTGCACTTTAGTGCC
Found at i:22772857 original size:65 final size:65
Alignment explanation
Indices: 22772782--22772927 Score: 283
Period size: 65 Copynumber: 2.2 Consensus size: 65
22772772 ATATAATGAA
22772782 ATTAAGCATTGACACCCATAAACATTTATTAAGACAATGAAATTGTTCGCCCAAAGTTAACAATT
1 ATTAAGCATTGACACCCATAAACATTTATTAAGACAATGAAATTGTTCGCCCAAAGTTAACAATT
22772847 ATTAAGCATTGACACCCATAAACATTTATTAAGACAATGAAATTGTTCGCCCAAAGTTAACAATT
1 ATTAAGCATTGACACCCATAAACATTTATTAAGACAATGAAATTGTTCGCCCAAAGTTAACAATT
*
22772912 ATTAAGCCTTGACACC
1 ATTAAGCATTGACACC
22772928 AAGCAAAATC
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 80 1.00
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (65 bp):
ATTAAGCATTGACACCCATAAACATTTATTAAGACAATGAAATTGTTCGCCCAAAGTTAACAATT
Found at i:22784201 original size:8 final size:8
Alignment explanation
Indices: 22784188--22784220 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
22784178 AACTAAATTT
22784188 TATTTTTA
1 TATTTTTA
22784196 TATTTTTA
1 TATTTTTA
22784204 TATATTTTA
1 TAT-TTTTA
22784213 -ATTTTTA
1 TATTTTTA
22784220 T
1 T
22784221 TATGCATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 5 0.22
8 13 0.57
9 5 0.22
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TATTTTTA
Found at i:22788126 original size:26 final size:26
Alignment explanation
Indices: 22788086--22788155 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
22788076 TTTTTTGAAT
**
22788086 TTTTACTAAGGGTAAAATCATCAAAA
1 TTTTACTGGGGGTAAAATCATCAAAA
* *
22788112 TTTTA-TCGGGTGTAAAATCGTCAAAA
1 TTTTACT-GGGGGTAAAATCATCAAAA
22788138 TTTTACTGGGGGTAAAAT
1 TTTTACTGGGGGTAAAAT
22788156 AGGGATGAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.03
26 35 0.95
27 1 0.03
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (26 bp):
TTTTACTGGGGGTAAAATCATCAAAA
Found at i:22792395 original size:50 final size:50
Alignment explanation
Indices: 22792320--22792561 Score: 222
Period size: 50 Copynumber: 4.9 Consensus size: 50
22792310 CATTTGGGTA
22792320 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* * *
22792370 AAGAGGTCCAATGTAAGACCATGTCTGGGACATGGTGTTGGCATCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** * * * *
22792420 GAGAGGTCCCCCGTAAGACCATGTCTGTGACATGGC-ATGAGCATCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTG-GCACCGAGAT
* ** * * * * *
22792470 GAGAACTCCCATGTAAGGCCATATCTGGGATATGGCATTGGCA--GTACAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGAT
** * * *
22792519 GAA-ACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 -AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
22792562 TGTTATATTC
Statistics
Matches: 158, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.23
50 118 0.75
51 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:22792790 original size:16 final size:16
Alignment explanation
Indices: 22792769--22792799 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22792759 GTTATTTAAG
22792769 CAAGTAAGTAAGTAAA
1 CAAGTAAGTAAGTAAA
*
22792785 CAAGTAAGTGAGTAA
1 CAAGTAAGTAAGTAA
22792800 GTAAAGAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (16 bp):
CAAGTAAGTAAGTAAA
Found at i:22792813 original size:20 final size:20
Alignment explanation
Indices: 22792770--22792815 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
22792760 TTATTTAAGC
*
22792770 AAGTAAGTAAGTAAACAAGT
1 AAGTAAGTAAGTAAACAAGA
* *
22792790 AAGTGAGTAAGTAAAGAAGA
1 AAGTAAGTAAGTAAACAAGA
22792810 AAGTAA
1 AAGTAA
22792816 AGATCCTAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.02, G:0.24, T:0.17
Consensus pattern (20 bp):
AAGTAAGTAAGTAAACAAGA
Found at i:22798155 original size:24 final size:24
Alignment explanation
Indices: 22798092--22798184 Score: 89
Period size: 24 Copynumber: 3.9 Consensus size: 24
22798082 TAGTCTTCAC
* * *
22798092 CTCCACCTTTGTACTT-ATATTCAT
1 CTCCACCGTTG-ACTTCATCTTTAT
* *
22798116 CTCCATCGTTGTCTTCATCTTTAT
1 CTCCACCGTTGACTTCATCTTTAT
* *
22798140 CTCCACCCTTGGCTTCATCTTTAT
1 CTCCACCGTTGACTTCATCTTTAT
* *
22798164 CCCCACCGTTAACTTCATCTT
1 CTCCACCGTTGACTTCATCTT
22798185 CGTCTCTATC
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
23 3 0.05
24 53 0.95
ACGTcount: A:0.16, C:0.34, G:0.06, T:0.43
Consensus pattern (24 bp):
CTCCACCGTTGACTTCATCTTTAT
Found at i:22805707 original size:29 final size:30
Alignment explanation
Indices: 22805626--22805707 Score: 96
Period size: 31 Copynumber: 2.7 Consensus size: 30
22805616 GAATCAAAAC
22805626 TAAAATTTCATATATAAATTTAAACCACAAT
1 TAAAATTTCATATATAAA-TTAAACCACAAT
* **
22805657 CAAAATTTCATATATATAATTACGCCA-AAT
1 TAAAATTTCATATATA-AATTAAACCACAAT
22805687 TAAAATTT-ATATATCAAATTA
1 TAAAATTTCATATAT-AAATTA
22805708 TATAGTACTC
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
29 11 0.24
30 11 0.24
31 21 0.47
32 2 0.04
ACGTcount: A:0.50, C:0.12, G:0.01, T:0.37
Consensus pattern (30 bp):
TAAAATTTCATATATAAATTAAACCACAAT
Found at i:22816195 original size:22 final size:23
Alignment explanation
Indices: 22816162--22816204 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
22816152 CACAACGCAA
22816162 CAAAAAACAAAGACAA-TAATTT
1 CAAAAAACAAAGACAACTAATTT
*
22816184 CAAAATAA-AAAGGCAACTAAT
1 CAAAA-AACAAAGACAACTAAT
22816205 CCGAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.63, C:0.14, G:0.07, T:0.16
Consensus pattern (23 bp):
CAAAAAACAAAGACAACTAATTT
Found at i:22830340 original size:7 final size:7
Alignment explanation
Indices: 22830328--22830352 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22830318 AGGTAGTCAT
22830328 ATAACCC
1 ATAACCC
22830335 ATAACCC
1 ATAACCC
22830342 ATAACCC
1 ATAACCC
22830349 ATAA
1 ATAA
22830353 TAACATGGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (7 bp):
ATAACCC
Found at i:22831748 original size:29 final size:30
Alignment explanation
Indices: 22831695--22831753 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
22831685 GAATTGAATC
22831695 AAATCAAAATTTCATATATAAAATTACACA
1 AAATCAAAATTTCATATATAAAATTACACA
* *
22831725 AAATCAAAATTT-ATGTATATAATTACACA
1 AAATCAAAATTTCATATATAAAATTACACA
22831754 TTAAACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.32
Consensus pattern (30 bp):
AAATCAAAATTTCATATATAAAATTACACA
Found at i:22831767 original size:31 final size:29
Alignment explanation
Indices: 22831699--22831775 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 29
22831689 TGAATCAAAT
*
22831699 CAAAATTTCATATATAAAATTACACAAAAT
1 CAAAATTT-ATATATAAAATTACACAAAAC
* *
22831729 CAAAATTTATGTATATAATTACACATTAAAC
1 CAAAATTTATATATAAAATTACACA--AAAC
* *
22831760 CATAATTTATCTATAA
1 CAAAATTTATATATAA
22831776 TTTTGAGATT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
29 15 0.38
30 8 0.21
31 16 0.41
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.35
Consensus pattern (29 bp):
CAAAATTTATATATAAAATTACACAAAAC
Found at i:22832530 original size:126 final size:126
Alignment explanation
Indices: 22832305--22832658 Score: 636
Period size: 126 Copynumber: 2.8 Consensus size: 126
22832295 TAATTTCGAG
* *
22832305 TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAGTATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* *
22832370 AAATCGCGCCCTCGTGGACTCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACGAAAGAAATAATTATTTTT
*
22832431 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGATAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
22832496 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACGAAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACGAAAGAAATAATTATTTTT
* *
22832557 TTGACGTTTCTGAGCAAATATTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTTTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
22832622 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAG
22832659 CATGTTTGGT
Statistics
Matches: 219, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 219 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (126 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACGAAAGAAATAATTATTTTT
Found at i:22835893 original size:116 final size:116
Alignment explanation
Indices: 22835689--22835928 Score: 410
Period size: 116 Copynumber: 2.1 Consensus size: 116
22835679 TGATAAATTG
* *
22835689 TATTAACTCAAAAAATTGTATTACTAGTTAGTAAAATTATCAAATTATATAAAATTATTATTTGT
1 TATTAACTCAAAAAATTGTATTAATAGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
22835754 TAGTACTAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACTAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
* *
22835805 TATTAACTCTAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTATTAATAGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
22835870 TAGTAGC-AGTCAAAATATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
66 TAGTA-CTAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
22835921 TATTAACT
1 TATTAACT
22835929 TAGTTTAGGG
Statistics
Matches: 117, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
116 116 0.99
117 1 0.01
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (116 bp):
TATTAACTCAAAAAATTGTATTAATAGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACTAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
Found at i:22836021 original size:21 final size:22
Alignment explanation
Indices: 22835958--22836021 Score: 89
Period size: 21 Copynumber: 3.0 Consensus size: 22
22835948 AAATTAGGTT
*
22835958 AGGGG-TAGGGTTTTAAAGTTA
1 AGGGGTTAGGGTTTTTAAGTTA
22835979 A-GGGTTAGGGTTTTTAAGTTA
1 AGGGGTTAGGGTTTTTAAGTTA
*
22836000 AGGGGTTAGTGTTTTTAA-TTA
1 AGGGGTTAGGGTTTTTAAGTTA
22836021 A
1 A
22836022 ATTAGGTTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
20 3 0.08
21 21 0.54
22 15 0.38
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.41
Consensus pattern (22 bp):
AGGGGTTAGGGTTTTTAAGTTA
Found at i:22836037 original size:29 final size:29
Alignment explanation
Indices: 22836004--22836219 Score: 124
Period size: 29 Copynumber: 7.1 Consensus size: 29
22835994 AAGTTAAGGG
*
22836004 GTTAGTGTTTTTAATTAAATTAGGTTAGA
1 GTTAGGGTTTTTAATTAAATTAGGTTAGA
* * *
22836033 GTTAGGGTTTCTAATTAAATTAGATTAGG
1 GTTAGGGTTTTTAATTAAATTAGGTTAGA
*
22836062 GTTAGGGTTTTTAGTTAAATTA---T---
1 GTTAGGGTTTTTAATTAAATTAGGTTAGA
* *
22836085 GTTAGGATTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAA
1 GTTAGGGTTTTT-AA-TTAA--ATTA-GG---TT-AG---A
* * *
22836126 GGTTTAGGG-TTTTAAGTTAAGGTTAAGTTAGG
1 -G-TTAGGGTTTTTAA-TTAA-ATTAGGTTAGA
22836158 GTTAGGGTTTTTAATTAAATTAGGTTAG-
1 GTTAGGGTTTTTAATTAAATTAGGTTAGA
*
22836186 GATTAGGGTTTTTAATTAAATTAGGTTAGG
1 G-TTAGGGTTTTTAATTAAATTAGGTTAGA
22836216 GTTA
1 GTTA
22836220 AAGTTAAAGT
Statistics
Matches: 149, Mismatches: 15, Indels: 46
0.71 0.07 0.22
Matches are distributed among these distances:
23 11 0.07
24 1 0.01
25 4 0.03
26 1 0.01
27 3 0.02
28 1 0.01
29 83 0.56
30 11 0.07
31 7 0.05
34 1 0.01
35 2 0.01
36 2 0.01
39 1 0.01
40 4 0.03
41 7 0.05
42 5 0.03
43 5 0.03
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.45
Consensus pattern (29 bp):
GTTAGGGTTTTTAATTAAATTAGGTTAGA
Found at i:22836140 original size:20 final size:21
Alignment explanation
Indices: 22836086--22836149 Score: 103
Period size: 21 Copynumber: 3.0 Consensus size: 21
22836076 TTAAATTATG
*
22836086 TTAGGATTTTTAAAGTTAAGGT
1 TTAGGGTTTTT-AAGTTAAGGT
22836108 TTAGGGTTTTTAAGTTAAGGT
1 TTAGGGTTTTTAAGTTAAGGT
22836129 TTAGGG-TTTTAAGTTAAGGT
1 TTAGGGTTTTTAAGTTAAGGT
22836149 T
1 T
22836150 AAGTTAGGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
20 15 0.37
21 16 0.39
22 10 0.24
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (21 bp):
TTAGGGTTTTTAAGTTAAGGT
Found at i:22836270 original size:37 final size:39
Alignment explanation
Indices: 22836188--22836275 Score: 117
Period size: 42 Copynumber: 2.2 Consensus size: 39
22836178 TAGGTTAGGA
*
22836188 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAAAGTTAAAGT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAAAGGT--A-T
*
22836230 TTAGGGTTTTTAATTAAATTAGGTTAGGGTT-AGGGT-T
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAAAGGTAT
22836267 TTAGGGTTT
1 TTAGGGTTT
22836276 AGGGTTAGGG
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
37 10 0.23
41 3 0.07
42 31 0.70
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (39 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAAAGGTAT
Found at i:22836272 original size:14 final size:15
Alignment explanation
Indices: 22836253--22836281 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22836243 TTAAATTAGG
22836253 TTAGGG-TTAGGGTT
1 TTAGGGTTTAGGGTT
22836267 TTAGGGTTTAGGGTT
1 TTAGGGTTTAGGGTT
22836282 AGGGGTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.45
Consensus pattern (15 bp):
TTAGGGTTTAGGGTT
Found at i:22836357 original size:21 final size:21
Alignment explanation
Indices: 22836326--22836380 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
22836316 TTAAATTAGG
22836326 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGG-TTTTAAAGTTAAGGT
*
22836348 TTAGGGTTTTTAAGTTAAGGT
1 TTAGGGTTTTAAAGTTAAGGT
22836369 TTAGGGTTTTAA
1 TTAGGGTTTTAA
22836381 TTAAATTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 25 0.81
22 6 0.19
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.47
Consensus pattern (21 bp):
TTAGGGTTTTAAAGTTAAGGT
Found at i:22836423 original size:23 final size:23
Alignment explanation
Indices: 22836230--22836398 Score: 108
Period size: 23 Copynumber: 7.3 Consensus size: 23
22836220 AAGTTAAAGT
22836230 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
* **
22836253 TTAGGGTTAGGGTT--TTAGGGTTTAGGG
1 TTAGGGTT---TTTAATTA--AATTA-GG
*
22836280 TTAGGGGTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
22836303 TTATGGTTTTGT-ATTAAATTAGG
1 TTAGGGTTTT-TAATTAAATTAGG
*
22836326 TTAGGGTTTTT-A--AAGTTAAGG
1 TTAGGGTTTTTAATTAAATT-AGG
22836347 TTTAGGGTTTTTAAGTT--A--AGG
1 -TTAGGGTTTTTAA-TTAAATTAGG
22836368 TTTAGGG-TTTTAATTAAATTAGG
1 -TTAGGGTTTTTAATTAAATTAGG
22836391 TTAGGGTT
1 TTAGGGTT
22836399 AGGGTTTTTA
Statistics
Matches: 114, Mismatches: 12, Indels: 40
0.69 0.07 0.24
Matches are distributed among these distances:
19 2 0.02
20 10 0.09
21 14 0.12
22 19 0.17
23 43 0.38
24 9 0.08
26 8 0.07
27 9 0.08
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.46
Consensus pattern (23 bp):
TTAGGGTTTTTAATTAAATTAGG
Found at i:22836436 original size:29 final size:29
Alignment explanation
Indices: 22836369--22836438 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 29
22836359 AAGTTAAGGT
*
22836369 TTAGGG-TTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGAG
22836397 TTAGGGTTTTTAATTAAATTAGGTTAGAG
1 TTAGGGTTTTTAATTAAATTAGGTTAGAG
22836426 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
22836439 GGGTTTTGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.46
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGAG
Found at i:22836474 original size:133 final size:137
Alignment explanation
Indices: 22836307--22836577 Score: 453
Period size: 133 Copynumber: 2.0 Consensus size: 137
22836297 ATTAGGTTAT
*
22836307 GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTA
1 GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAGGTTTA
*
22836372 GGG-TTTTAATT-AA-A-TTA-GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGG
66 GGGTTTTTAATTAAATAGTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGATTAGAGTTA-GG
22836432 TTTTTAAG
130 TTTTTAAG
*
22836440 GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAATGTTTAGAGTTTTTAAGTTAAGGTTTA
1 GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAGGTTTA
22836505 GGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGATTAGAGTTAG
66 GGGTTTTTAATTAAA-TA-GTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGATTAGAGTTAG
22836570 GTTTTTAA
129 GTTTTTAA
22836578 TTAAATTAGG
Statistics
Matches: 128, Mismatches: 3, Indels: 8
0.92 0.02 0.06
Matches are distributed among these distances:
133 66 0.52
134 8 0.06
135 2 0.02
137 1 0.01
139 12 0.09
140 39 0.30
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (137 bp):
GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAGGTTTA
GGGTTTTTAATTAAATAGTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGATTAGAGTTAGGT
TTTTAAG
Found at i:22836489 original size:22 final size:22
Alignment explanation
Indices: 22836459--22836514 Score: 87
Period size: 21 Copynumber: 2.6 Consensus size: 22
22836449 TTAAATTAGG
*
22836459 TTAGGGTTTTTAAAGTTAATGT
1 TTAGGGTTTTTAAAGTTAAGGT
*
22836481 TTAGAGTTTTT-AAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
22836502 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
22836515 TTAAATTAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (22 bp):
TTAGGGTTTTTAAAGTTAAGGT
Found at i:22836541 original size:35 final size:35
Alignment explanation
Indices: 22836502--22836595 Score: 130
Period size: 35 Copynumber: 2.9 Consensus size: 35
22836492 AAGTTAAGGT
*
22836502 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGAG
22836537 TTAGGGTTTTTAATTAAATTA-G--A---TTAGAG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGAG
22836566 TTA-GGTTTTTAATTAAATTAGGTTAGGGTT
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTT
22836596 TAAGGTTAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 13
0.79 0.02 0.20
Matches are distributed among these distances:
28 17 0.33
29 9 0.17
31 1 0.02
32 1 0.02
34 3 0.06
35 21 0.40
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.46
Consensus pattern (35 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGAG
Found at i:22836563 original size:23 final size:23
Alignment explanation
Indices: 22836535--22836622 Score: 90
Period size: 23 Copynumber: 3.6 Consensus size: 23
22836525 TTAGGGTTAG
22836535 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
*
22836558 GATTAGAGTTAGGTTTTTAATTAAATTA
1 GGTT--AG---GGTTTTTAATTAAATTA
22836586 GGTTAGGG--TTTAAGGTTAAATTA
1 GGTTAGGGTTTTTAA--TTAAATTA
22836609 GGTTAGGGTTTTTA
1 GGTTAGGGTTTTTA
22836623 TTACATCAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
21 5 0.09
23 21 0.39
25 6 0.11
26 2 0.04
28 20 0.37
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:22836581 original size:28 final size:29
Alignment explanation
Indices: 22836502--22836591 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 29
22836492 AAGTTAAGGT
*
22836502 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG
1 TTAGGGTTTTTAATTAAATTA-G--A---TTAGAG
22836537 TTAGGGTTTTTAATTAAATTAGATTAGAG
1 TTAGGGTTTTTAATTAAATTAGATTAGAG
*
22836566 TTA-GGTTTTTAATTAAATTAGGTTAG
1 TTAGGGTTTTTAATTAAATTAGATTAG
22836592 GGTTTAAGGT
Statistics
Matches: 53, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
28 22 0.42
29 8 0.15
32 1 0.02
34 1 0.02
35 21 0.40
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGATTAGAG
Found at i:22836605 original size:133 final size:123
Alignment explanation
Indices: 22835937--22836596 Score: 663
Period size: 125 Copynumber: 5.2 Consensus size: 123
22835927 CTTAGTTTAG
* *
22835937 GGTTTTTAATTAAATTAGGTTAGGGGTAGGGTTTTAAAGTTAAGGGTTAGGGTTTTTAAGTTAAG
1 GGTTTTTAATTAAATTAGGTTA-GGGT----TTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAA-
* * * * * *
22836002 GGGTTAGTGTTTTTAATTAAATTA-GGTTAGAGTTAGGGTTTCTAATTAAATTAGATTAGGGTTA
60 GGTTTAG-GGTTTTAATTAAATTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTA
* * * *
22836066 GGGTTTTTAGTTAAATTATGTTAGGATTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTT
1 -GGTTTTTAATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAGGTTT
* *
22836131 AGGGTTTTAAGTTAAGGTTA-AGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAG-GATTA
65 AGGGTTTTAA-TTAA-ATTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAG-TTA
* *
22836191 GGGTTTTTAATTAAATTAGGTTAGGG---TTAAAGTTAAAGTTTAGGGTTTTTAA-TTAAATTAG
1 -GGTTTTTAATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTT--A--AG
**** *
22836252 G-TTAGGGTTAGGGTT---TTAGGGTTTAGGGTTAGGGGTTTTAATTAAATTAGGTT--A--T-
61 GTTTAGGGTTTTAATTAAATTAGGG-TTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTA
*
22836307 GGTTTTGT-ATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTT
1 GGTTTT-TAATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAGGTTT
22836371 AGGGTTTTAATTAAATTA-GGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTA
65 AGGGTTTTAATTAAATTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTA
*
22836429 GGGTTTTTAAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAATGTTTAGAGTTTTTAA
1 -GGTTTTT-A---------ATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAA
22836494 GTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAG
55 GTTAAGGTTTAGGG-TTTTAATT-AA--A--TTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAG
*
22836559 ATTAGAGTTA
114 GTTAGAGTTA
22836569 GGTTTTTAATTAAATTAGGTTAGGGTTT
1 GGTTTTTAATTAAATTAGGTTAGGGTTT
22836597 AAGGTTAAAT
Statistics
Matches: 457, Mismatches: 30, Indels: 87
0.80 0.05 0.15
Matches are distributed among these distances:
115 26 0.06
116 11 0.02
117 32 0.07
118 27 0.06
119 9 0.02
120 1 0.00
121 33 0.07
122 26 0.06
123 16 0.04
124 19 0.04
125 95 0.21
129 23 0.05
130 20 0.04
133 58 0.13
134 8 0.02
135 2 0.00
137 1 0.00
138 1 0.00
139 10 0.02
140 39 0.09
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.45
Consensus pattern (123 bp):
GGTTTTTAATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAGGTTTA
GGGTTTTAATTAAATTAGGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTA
Found at i:22836646 original size:25 final size:25
Alignment explanation
Indices: 22836618--22836754 Score: 146
Period size: 25 Copynumber: 5.7 Consensus size: 25
22836608 AGGTTAGGGT
22836618 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
22836643 TTTTATTACATCAAAT-AA-TATC-A
1 TTTTATTACATCAAATAAACT-TCTA
** * ** *
22836666 --AAATAAC-TCGAAAT--TTTTTTA
1 TTTTATTACATC-AAATAAACTTCTA
22836687 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
22836712 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
22836737 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
22836755 TATCAAAATA
Statistics
Matches: 92, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.03
21 10 0.11
23 10 0.11
24 6 0.07
25 63 0.68
ACGTcount: A:0.42, C:0.14, G:0.01, T:0.44
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:22836704 original size:44 final size:43
Alignment explanation
Indices: 22836638--22836808 Score: 157
Period size: 44 Copynumber: 3.8 Consensus size: 43
22836628 TCAAATAAAC
*
22836638 TTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAATTT
1 TTCTATTTTATTACATCAAATAATATCAAAATAACTC-AAATAT
* ** * *
22836682 TTTTATTTTATTACATCAAATAA-ACTTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAATA--TC-A--AAATAAC-TCAAAT--AT
*
22836732 TTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAAT
1 TTCTATTTTATTACATCAAATAATATCAAAATAACTC-AAATAT
*
22836776 TTCTATCTTT-TTACATAAAATAATATCAAAATA
1 TTCTAT-TTTATTACATCAAATAATATCAAAATA
22836809 TTCAAAATAT
Statistics
Matches: 103, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
43 1 0.01
44 51 0.50
45 7 0.07
46 8 0.08
48 9 0.09
49 4 0.04
50 22 0.21
51 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.01, T:0.42
Consensus pattern (43 bp):
TTCTATTTTATTACATCAAATAATATCAAAATAACTCAAATAT
Found at i:22836790 original size:94 final size:94
Alignment explanation
Indices: 22836618--22836798 Score: 301
Period size: 94 Copynumber: 1.9 Consensus size: 94
22836608 AGGTTAGGGT
* **
22836618 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAATTTT
1 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAATT
* *
22836683 TTTATTTTATTACATCAAATAAACTTCTA
66 TCTATTTTATTACATAAAATAAACTTCTA
22836712 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAATT
1 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAATT
22836777 TCTATCTTT-TTACATAAAATAA
66 TCTAT-TTTATTACATAAAATAA
22836799 TATCAAAATA
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 78 0.96
95 3 0.04
ACGTcount: A:0.44, C:0.14, G:0.01, T:0.42
Consensus pattern (94 bp):
TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAATT
TCTATTTTATTACATAAAATAAACTTCTA
Found at i:22837927 original size:7 final size:7
Alignment explanation
Indices: 22837917--22837942 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
22837907 TTATATACAT
22837917 AATACTA
1 AATACTA
22837924 AATACTA
1 AATACTA
22837931 AATACTA
1 AATACTA
22837938 AATAC
1 AATAC
22837943 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:22839143 original size:22 final size:22
Alignment explanation
Indices: 22839118--22839166 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
22839108 AAATATGGAT
22839118 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
22839140 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
22839162 TTGAG
1 TTGAG
22839167 TGGAAATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:22839173 original size:11 final size:11
Alignment explanation
Indices: 22839134--22839190 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
22839124 GAATTTTGGA
22839134 AGGAAATTGAG
1 AGGAAATTGAG
*
22839145 A-GAATTTTG-G
1 AGGAA-ATTGAG
22839155 AAGGAAATTGAG
1 -AGGAAATTGAG
*
22839167 TGGAAATTGAG
1 AGGAAATTGAG
22839178 AGGAAATATGAG
1 AGGAAAT-TGAG
22839190 A
1 A
22839191 AAGAATTTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
10 4 0.11
11 24 0.65
12 9 0.24
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.23
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:22841009 original size:21 final size:21
Alignment explanation
Indices: 22840979--22841022 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
22840969 TCATTTGGTC
22840979 AAGTACCGATACTTCCTTT-AA
1 AAGTACCGATACTT-CTTTCAA
*
22841000 AAGTATCGATACTTCTTTCAA
1 AAGTACCGATACTTCTTTCAA
22841021 AA
1 AA
22841023 AACCAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.34
Consensus pattern (21 bp):
AAGTACCGATACTTCTTTCAA
Found at i:22843261 original size:43 final size:44
Alignment explanation
Indices: 22843160--22843271 Score: 199
Period size: 44 Copynumber: 2.6 Consensus size: 44
22843150 TATCATTTGT
*
22843160 CACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
22843204 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAA-CTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
*
22843247 CACTTATCACTTGTCATTGATCAGA
1 CACTTATCACTTGTCACTGATCAGA
22843272 AGTACTCAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
43 28 0.42
44 38 0.58
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (44 bp):
CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:22843365 original size:17 final size:17
Alignment explanation
Indices: 22843343--22843375 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22843333 TATTCTCAAT
22843343 TCATCA-ACAAATATATC
1 TCATCATAC-AATATATC
22843360 TCATCATACAATATAT
1 TCATCATACAATATAT
22843376 AATTCATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
TCATCATACAATATATC
Found at i:22853013 original size:29 final size:30
Alignment explanation
Indices: 22852970--22853027 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
22852960 CTTTCACTTG
22852970 AAAGAAAAAACTAAAATTAA-ATTTAATAA
1 AAAGAAAAAACTAAAATTAATATTTAATAA
*
22852999 AAAGAAAAGAA-TAAAATTAATTTTTAATA
1 AAAGAAAA-AACTAAAATTAATATTTAATA
22853028 GATAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (30 bp):
AAAGAAAAAACTAAAATTAATATTTAATAA
Found at i:22864748 original size:17 final size:16
Alignment explanation
Indices: 22864720--22864766 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
22864710 TTTTAGAATA
*
22864720 AAAAAAAAATAAAAAT
1 AAAAATAAATAAAAAT
*
22864736 CATAAATAAATAAGAAAT
1 -AAAAATAAATAA-AAAT
22864754 AAAAATAAA-AAAA
1 AAAAATAAATAAAA
22864767 GTGGCAGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 2 0.08
16 2 0.08
17 18 0.69
18 4 0.15
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (16 bp):
AAAAATAAATAAAAAT
Found at i:22864753 original size:7 final size:6
Alignment explanation
Indices: 22864716--22864764 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
22864706 GAAATTTTAG
*
22864716 AATAAA AA-AAA AATAAA AATCATA AAT--A AATAAGA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AAT-AAA AATAAA AATAA-A AATAAA AATAAA
22864763 AA
1 AA
22864765 AAGTGGCAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
4 4 0.11
5 5 0.14
6 17 0.46
7 11 0.30
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:22866153 original size:24 final size:24
Alignment explanation
Indices: 22866110--22866158 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
22866100 GTTTAGTATC
* *
22866110 ACTATCATCATAATTTGCACTATT
1 ACTATCATCATAACTCGCACTATT
*
22866134 ACTATCATCATAGCTCGCACTATT
1 ACTATCATCATAACTCGCACTATT
22866158 A
1 A
22866159 TTATTAACCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (24 bp):
ACTATCATCATAACTCGCACTATT
Found at i:22890097 original size:13 final size:13
Alignment explanation
Indices: 22890079--22890103 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22890069 TAATTTATAT
22890079 GTGTGAAAATTTC
1 GTGTGAAAATTTC
22890092 GTGTGAAAATTT
1 GTGTGAAAATTT
22890104 TATCGTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:22891933 original size:41 final size:41
Alignment explanation
Indices: 22891896--22892013 Score: 227
Period size: 41 Copynumber: 2.9 Consensus size: 41
22891886 GACTATATGT
22891896 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
*
22891937 CTAGCAGGCTAAGTGCCGGTGAATTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
22891978 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTA
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTA
22892014 AGTGCCAGTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.29, C:0.21, G:0.30, T:0.20
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGC
Found at i:22892016 original size:25 final size:25
Alignment explanation
Indices: 22891982--22892031 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
22891972 ATAAGCCTAG
*
22891982 CAGGCTAAGTGCCGGTGAACTGAAT
1 CAGGCTAAGTGCCAGTGAACTGAAT
22892007 CAGGCTAAGTGCCAGTGAACTGAAT
1 CAGGCTAAGTGCCAGTGAACTGAAT
22892032 TATACTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (25 bp):
CAGGCTAAGTGCCAGTGAACTGAAT
Found at i:22895328 original size:13 final size:13
Alignment explanation
Indices: 22895310--22895335 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22895300 ATGAACCCTA
22895310 GGATTATGCAGGG
1 GGATTATGCAGGG
22895323 GGATTATGCAGGG
1 GGATTATGCAGGG
22895336 TAATAAGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.46, T:0.23
Consensus pattern (13 bp):
GGATTATGCAGGG
Found at i:22913107 original size:6 final size:6
Alignment explanation
Indices: 22913089--22913132 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
22913079 TACAAATGCA
* * *
22913089 TCATTT CTCATTT TCATTT TCATTT CCATTT CCATTT CCATTT T
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
22913133 GAGAAACCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.16, C:0.25, G:0.00, T:0.59
Consensus pattern (6 bp):
TCATTT
Found at i:22913113 original size:12 final size:12
Alignment explanation
Indices: 22913090--22913132 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
22913080 ACAAATGCAT
*
22913090 CATTTCTCATTTT
1 CATTT-TCATTTC
22913103 CATTTTCATTTC
1 CATTTTCATTTC
*
22913115 CATTTCCATTTC
1 CATTTTCATTTC
22913127 CATTTT
1 CATTTT
22913133 GAGAAACCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (12 bp):
CATTTTCATTTC
Found at i:22913124 original size:18 final size:19
Alignment explanation
Indices: 22913089--22913131 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
22913079 TACAAATGCA
*
22913089 TCATTTCTCATTTTCATTT
1 TCATTTCTCATTTCCATTT
22913108 TCATTTC-CATTTCCATTT
1 TCATTTCTCATTTCCATTT
*
22913126 CCATTT
1 TCATTT
22913132 TGAGAAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (19 bp):
TCATTTCTCATTTCCATTT
Found at i:22915413 original size:98 final size:98
Alignment explanation
Indices: 22915298--22915492 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
22915288 AAAAATCATG
*
22915298 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
22915363 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* *
22915396 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
22915461 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
22915493 TTTATTGTAT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:22927822 original size:44 final size:43
Alignment explanation
Indices: 22927252--22927824 Score: 147
Period size: 44 Copynumber: 13.0 Consensus size: 43
22927242 AGTTGAATAT
* *
22927252 TGTAGATCTTATCTCCCTAAGCAGAAGTGGAGCAGATCGAAGA
1 TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
* ** *
22927295 CGGT-GAATCTTATCT-TTTCAAG-A-TAGTGGGAAGCAGATTTAAGCCA
1 -TGTAG-ATCTTATCTCCCT-AAGCAGTAGT-GG-AGCAGATTGAAG--A
*** * * * * * *
22927341 CCAAG-CCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGA
1 TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
* * *
22927383 TTATAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGA
1 -TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
* ** * *
22927427 CGGCGAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA
1 TGTAG-ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--A
*** * * * * * *
22927473 CCAAG-CCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGA
1 TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
* * * *
22927515 TTATAGATCCTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGA
1 -TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
** * * *
22927559 TGGCGAATCTTATCTTTCC-AAG-A-TAATGGGAAGCAGATTTAAGCCA
1 TGTAG-ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--A
*** * * * * *
22927605 CCAAG-CCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGA
1 TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
* * *
22927647 TTATAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGA
1 -TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
** *
22927691 TGGCGAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTG-AGCCA
1 TGTAG-ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAG--A
** * * * * * * * * *
22927737 -CCAAACCTTGTCTCCCTGAGTAGCAGCGGAGAAAATTGAAGA
1 TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
*
22927779 TTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
1 -TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
22927823 TG
1 TG
22927825 GCAGATTTTA
Statistics
Matches: 363, Mismatches: 119, Indels: 95
0.63 0.21 0.16
Matches are distributed among these distances:
42 18 0.05
43 38 0.10
44 265 0.73
45 24 0.07
46 18 0.05
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (43 bp):
TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
Found at i:22927826 original size:132 final size:132
Alignment explanation
Indices: 22926881--22927822 Score: 1463
Period size: 132 Copynumber: 7.1 Consensus size: 132
22926871 CTGCATTGAC
*
22926881 AGTGGAGCAGATCGAAGACGAC-AAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGACGGCGAA-TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
* *
22926945 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGC
65 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGC
22927010 AGT
130 AGT
* * * *
22927013 AGTGGAACAGATCGAAGATGGCGAATCTTATCTTCCCAAGATAGTGGGAAGCAGATTTGAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * ** * * * *
22927078 CAAACCTTGTTTCATTGAGTAACAGCAGAGAAGGTTGAAGATTATAGATCTTATCTCCCAAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
22927143 AT
131 GT
22927145 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * * *
22927210 CAACCCTTGTCTCCCTGAGTAACAGCGGAGAAAGTTGAATATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
22927275 GA
131 GT
* *
22927277 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTTCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
22927342 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
22927407 GT
131 GT
*
22927409 AGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * *
22927474 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCCTATCTTCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
22927539 GT
131 GT
* *
22927541 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAATGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * *
22927606 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCTTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
22927671 GT
131 GT
* *
22927673 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * ** *
22927738 CAAACCTTGTCTCCCTGAGTAGCAGCGGAGAAAATTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
22927803 GT
131 GT
22927805 AGTGGAGCAGATCGAAGA
1 AGTGGAGCAGATCGAAGA
22927823 TGGCAGATTT
Statistics
Matches: 744, Mismatches: 65, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
132 742 1.00
133 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
GT
Found at i:22927913 original size:396 final size:394
Alignment explanation
Indices: 22926881--22927970 Score: 1431
Period size: 396 Copynumber: 2.8 Consensus size: 394
22926871 CTGCATTGAC
*
22926881 AGTGGAGCAGATCGAAGACGAC-AAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGACGGCGAA-TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
22926945 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGC
65 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
*
22927010 AGTAGTGGAACAGATCGAAGATGGCGAATCTTATCTTCCCAAGATAGTGGGAAGCAGATTTG-AG
130 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTT-CCAAGATAGTGGGAAGCAGA-TTGAAG
** * ** *
22927074 CCACCAAACCTTGTTTCATTGAGTAACAGCAGAGA-AGGTTGAAGATTATAGATCTTATCTCCCA
193 CCACCAAACCTTG-TTCCCTGAGCAACAGTGGA-ATAGGTTGAAGATTATAGATCTTATCTCCCT
* * *
22927138 AAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
256 AAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAATGGGAAGCAGATTT
* * * *
22927203 AAGCCACCAACCCTTGTCTCCCTGAGTAACAGCGGAGAAAGTTGAATATTGTAGATCTTATCTCC
321 AAGCCACCAACCCTTATCTCCCTGAGCAACAGCGGAGAAAGTTGAAGATTATAGATCTTATCTCC
22927268 CTAAGCAGA
386 CTAAGCAGA
* *
22927277 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTTCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
22927342 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * *
22927407 GTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
131 GTAGTGGAGCAGATCGAAGATGGCGAATCTTATC-TTCCAAGATAGTGGGAAGCAGATTGAAGCC
* * * * *
22927472 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCCTATCTTCCTAAG
195 ACCAAACCTTGT-TCCCTGAGCAACAGTGGAATAGGTTGAAGATTATAGATCTTATCTCCCTAAG
22927537 CAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAATGGGAAGCAGATTTAAG
259 CAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAATGGGAAGCAGATTTAAG
* * * * * *
22927602 CCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCTTA
324 CCACCAACCCTTATCTCCCTGAGCAACAGCGGAGAAAGTTGAAGATTATAGATCTTATCTCCCTA
*
22927667 AGCAGT
389 AGCAGA
* *
22927673 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * **
22927738 CAAACCTTGTCTCCCTGAGTAGCAGCGGAGAAAATTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * *** * * *
22927803 GTAGTGGAGCAGATCGAAGATGGC-AGATTTTACCTCTCTGTGGTTATAAT-GG-AGTACATTGA
131 GTAGTGGAGCAGATCGAAGATGGCGA-ATCTTATCT-TC-CAAG--ATAGTGGGAAGCAGATTGA
* ** ** ** * * * *
22927865 ATCCAATAATTCTACTTCCCTG-GACAACATTGGAATAGATTAAAGATTACAGATCTTATCTCCC
191 AGCCACCAAACCTTGTTCCCTGAG-CAACAGTGGAATAGGTTGAAGATTATAGATCTTATCTCCC
* *
22927929 TAGGCAGTAGTGGAGCAGATCGAAGATGAC-AAGTCTTATCTT
255 TAAGCAGTAGTGGAGCAGATCGAAGATGGCGAA-TCTTATCTT
22927971 CCTGAAGTTG
Statistics
Matches: 607, Mismatches: 75, Indels: 24
0.86 0.11 0.03
Matches are distributed among these distances:
395 8 0.01
396 572 0.94
397 21 0.03
398 2 0.00
399 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (394 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCAAGATAGTGGGAAGCAGATTGAAGCCA
CCAAACCTTGTTCCCTGAGCAACAGTGGAATAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAATGGGAAGCAGATTTAAGCC
ACCAACCCTTATCTCCCTGAGCAACAGCGGAGAAAGTTGAAGATTATAGATCTTATCTCCCTAAG
CAGA
Found at i:22927970 original size:264 final size:265
Alignment explanation
Indices: 22926881--22927954 Score: 1416
Period size: 264 Copynumber: 4.1 Consensus size: 265
22926871 CTGCATTGAC
*
22926881 AGTGGAGCAGATCGAAGACGAC-AAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGACGGCGAA-TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
* *
22926945 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGC
65 CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAAGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* * *
22927010 AGTAGTGGAACAGATCGAAGATGGCGAATCTTATCT-TCCCAAGATAGTGGGAAGCAGATTTG-A
130 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCTCTCAAGATAATGGGAAGCAGA-TTGAA
* * * ** * **
22927073 GCCACCAAACCTTGTTTCATTGAGTAACAGCAGAGA-AGGTTGAAGATTATAGATCTTATCTCCC
194 GCCACCAAGCCTAGTCTCCCTGAGCAACAGTGGA-ATAGGTTGAAGATTATAGATCTTATCTCCC
* *
22927137 AAAGCAAT
258 TAAGCAGT
22927145 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * *
22927210 CAACCCTTGTCTCCCTGAGTAACAGCGGAGAAAGTTGAATATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAAGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * * * * *
22927275 GAAGTGGAGCAGATCGAAGACGGTGAATCTTATCT-TTTCAAGATAGTGGGAAGCAGATTTAAGC
131 GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCTCTCAAGATAATGGGAAGCAGATTGAAGC
* * *
22927339 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAA
196 CACCAAGCCTAGTCTCCCTGAGCAACAGTGGAATAGGTTGAAGATTATAGATCTTATCTCCCTAA
22927404 GCAGT
261 GCAGT
*
22927409 AGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * * *
22927474 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCCTATCTTCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAAGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* *
22927539 GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTC-CAAGATAATGGGAAGCAGATTTAAGC
131 GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCTCTCAAGATAATGGGAAGCAGATTGAAGC
* * *
22927603 CACCAAGCCTTA-TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCTTA
196 CACCAAGCC-TAGTCTCCCTGAGCAACAGTGGAATAGGTTGAAGATTATAGATCTTATCTCCCTA
22927667 AGCAGT
260 AGCAGT
* *
22927673 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
22927738 CAAACCTTGTCTCCCTGAGTAGCAGCGGAGAAAATTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAAGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * *** * *
22927803 GTAGTGGAGCAGATCGAAGATGGC-AGATTTTACCTCTCTGTGGTTATAAT-GG-AGTACATTGA
131 GTAGTGGAGCAGATCGAAGATGGCGA-ATCTTATCTCTCTCAAG--ATAATGGGAAGCAGATTGA
* ** ** * * * * *
22927865 ATCCAATAATTCTACT-TCCCTG-GACAACATTGGAATAGATTAAAGATTACAGATCTTATCTCC
193 AGCCACCAAGCCTAGTCTCCCTGAG-CAACAGTGGAATAGGTTGAAGATTATAGATCTTATCTCC
*
22927928 CTAGGCAGT
257 CTAAGCAGT
22927937 AGTGGAGCAGATCGAAGA
1 AGTGGAGCAGATCGAAGA
22927955 TGACAAGTCT
Statistics
Matches: 722, Mismatches: 77, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
263 4 0.01
264 691 0.96
265 20 0.03
266 2 0.00
267 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (265 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAAGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCTCTCAAGATAATGGGAAGCAGATTGAAGC
CACCAAGCCTAGTCTCCCTGAGCAACAGTGGAATAGGTTGAAGATTATAGATCTTATCTCCCTAA
GCAGT
Found at i:22930010 original size:98 final size:98
Alignment explanation
Indices: 22929894--22930088 Score: 336
Period size: 98 Copynumber: 2.0 Consensus size: 98
22929884 AAAAATCATG
* *
22929894 AAGGAAATATTTCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
22929959 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGAATGTTCTTTTAAAGTA
* *
22929992 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
22930057 AAATCTTGGATGAGTGAATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGAATGTTCTTTTAAAGT
22930089 TTTATTGTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGAATGTTCTTTTAAAGTA
Found at i:22934243 original size:16 final size:15
Alignment explanation
Indices: 22934222--22934257 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
22934212 CTAAATAACG
*
22934222 AAAATAAATAAACAA
1 AAAATAAACAAACAA
22934237 TAAAATAAACAAACAA
1 -AAAATAAACAAACAA
22934253 AAAAT
1 AAAAT
22934258 TCAATCAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAATAAACAAACAA
Found at i:22936723 original size:133 final size:133
Alignment explanation
Indices: 22936485--22936751 Score: 516
Period size: 133 Copynumber: 2.0 Consensus size: 133
22936475 TTTTATACTT
22936485 ATTTTGCAGTTAAATAATCTATTATTTTAATTTAGGAAATTGTTAGCAAGCCATTTCAGGTGTAT
1 ATTTTGCAGTTAAATAATCTATTATTTTAATTTAGGAAATTGTTAGCAAGCCATTTCAGGTGTAT
22936550 AAACATCAAATAAACAACACTTGGTCAAATAATGTTTACAATATATTTTTCTTTAGTTGTTTTTA
66 AAACATCAAATAAACAACACTTGGTCAAATAATGTTTACAATATATTTTTCTTTAGTTGTTTTTA
22936615 TTC
131 TTC
22936618 ATTTTGCAGTTAAATAATCTATTATTTTAATTTAGGAAATTGTTAGCAAGCCATTTCAGGTGTAT
1 ATTTTGCAGTTAAATAATCTATTATTTTAATTTAGGAAATTGTTAGCAAGCCATTTCAGGTGTAT
* *
22936683 AAACATCAAGTAAACAACATTTGGTCAAATAATGTTTACAATATATTTTTCTTTAGTTGTTTTTA
66 AAACATCAAATAAACAACACTTGGTCAAATAATGTTTACAATATATTTTTCTTTAGTTGTTTTTA
22936748 TTC
131 TTC
22936751 A
1 A
22936752 GTTGAGTTTC
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 132 1.00
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (133 bp):
ATTTTGCAGTTAAATAATCTATTATTTTAATTTAGGAAATTGTTAGCAAGCCATTTCAGGTGTAT
AAACATCAAATAAACAACACTTGGTCAAATAATGTTTACAATATATTTTTCTTTAGTTGTTTTTA
TTC
Found at i:22945345 original size:24 final size:24
Alignment explanation
Indices: 22945318--22945368 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
22945308 AATTCTAATT
*
22945318 AATGTAAAATATATTATGCTACTA
1 AATGTAAAATATATTATACTACTA
*
22945342 AATGTTAAATATATTATACTACTA
1 AATGTAAAATATATTATACTACTA
22945366 AAT
1 AAT
22945369 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.08, G:0.06, T:0.39
Consensus pattern (24 bp):
AATGTAAAATATATTATACTACTA
Found at i:22946406 original size:18 final size:18
Alignment explanation
Indices: 22946383--22946423 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
22946373 TGCATACTTA
22946383 GCGAACTCTCCAAGAATG
1 GCGAACTCTCCAAGAATG
* * *
22946401 GCGAACTCTTCGAGAGTG
1 GCGAACTCTCCAAGAATG
22946419 GCGAA
1 GCGAA
22946424 ATCACGTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.17
Consensus pattern (18 bp):
GCGAACTCTCCAAGAATG
Found at i:22948965 original size:59 final size:61
Alignment explanation
Indices: 22948895--22949011 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 61
22948885 ATCATTTTAC
* * *
22948895 TATTAAATTAATATAATATTTA-T-CAAGAGAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAATAGAATATTTACTACAAGAGAAATATTAAATTAAATTTAAGATTAAATCT
*
22948954 TATTAAATTAATAGAATATTTATCTACAAGATAAATATTAAATTAAATTTAAGATTAA
1 TATTAAATTAATAGAATATTTA-CTACAAGAGAAATATTAAATTAAATTTAAGATTAA
22949012 GATAATCACT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 21 0.41
61 1 0.02
62 29 0.57
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.41
Consensus pattern (61 bp):
TATTAAATTAATAGAATATTTACTACAAGAGAAATATTAAATTAAATTTAAGATTAAATCT
Found at i:22954354 original size:20 final size:20
Alignment explanation
Indices: 22954316--22954363 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
22954306 CCCCAAGCCC
**
22954316 TATTTTTATTTATTTATTTAT
1 TATTTTTATTTATACATTT-T
22954337 T-TTTTTATTTATACATTTT
1 TATTTTTATTTATACATTTT
22954356 TATTTTTA
1 TATTTTTA
22954364 ATTTTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.88
21 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (20 bp):
TATTTTTATTTATACATTTT
Found at i:22954357 original size:14 final size:13
Alignment explanation
Indices: 22954328--22954373 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
22954318 TTTTTATTTA
*
22954328 TTTATTTAT-TTT
1 TTTATTTATAATT
22954340 TTTATTTATACATT
1 TTTATTTATA-ATT
*
22954354 TTTATTTTTAATT
1 TTTATTTATAATT
22954367 TTTATTT
1 TTTATTT
22954374 TCTAGATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
12 9 0.30
13 10 0.33
14 11 0.37
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTATAATT
Found at i:22954382 original size:28 final size:28
Alignment explanation
Indices: 22954323--22954403 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 28
22954313 CCCTATTTTT
* *
22954323 ATTTATTTA-TTTATTTTTTTATTTATAC
1 ATTTATATATTTTATTTTTAT-TTTATAC
* * *
22954351 ATTTTTAT-TTTTAATTTTTATTTTCTAG
1 ATTTATATATTTT-ATTTTTATTTTATAC
22954379 ATTTATATATTTTA-TTTTATTTTAT
1 ATTTATATATTTTATTTTTATTTTAT
22954404 TATGCATTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
27 10 0.23
28 22 0.51
29 11 0.26
ACGTcount: A:0.25, C:0.02, G:0.01, T:0.72
Consensus pattern (28 bp):
ATTTATATATTTTATTTTTATTTTATAC
Found at i:22958372 original size:32 final size:32
Alignment explanation
Indices: 22958322--22958397 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
22958312 CACATGCCTG
22958322 TGTGCCCCACACGACCAGAATGGCCTTGCCCA
1 TGTGCCCCACACGACCAGAATGGCCTTGCCCA
* * * * *
22958354 TGTGGCCCACATGCCCAGAATGGCTTTGCCCG
1 TGTGCCCCACACGACCAGAATGGCCTTGCCCA
22958386 TGT-CACCCACAC
1 TGTGC-CCCACAC
22958398 TGCTTGGCTC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.20, C:0.39, G:0.22, T:0.18
Consensus pattern (32 bp):
TGTGCCCCACACGACCAGAATGGCCTTGCCCA
Found at i:22973655 original size:17 final size:17
Alignment explanation
Indices: 22973629--22973713 Score: 93
Period size: 17 Copynumber: 5.1 Consensus size: 17
22973619 TACAATGTAG
* *
22973629 TATT-AATGAATTATTA
1 TATTGAATGAACTGTTA
22973645 TATTGAATGAACTGTTA
1 TATTGAATGAACTGTTA
* *
22973662 TATTGCACGAACTGTTA
1 TATTGAATGAACTGTTA
*
22973679 TATGGAATGAACTGTTA
1 TATTGAATGAACTGTTA
*
22973696 CT-TTGCATGAACTGTTA
1 -TATTGAATGAACTGTTA
22973713 T
1 T
22973714 TCGAATATTT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
16 5 0.09
17 52 0.90
18 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.41
Consensus pattern (17 bp):
TATTGAATGAACTGTTA
Found at i:22973687 original size:34 final size:34
Alignment explanation
Indices: 22973642--22973713 Score: 110
Period size: 34 Copynumber: 2.1 Consensus size: 34
22973632 TAATGAATTA
*
22973642 TTATATTGAATGAACTGTTA-TATTGCACGAACTG
1 TTATATGGAATGAACTGTTACT-TTGCACGAACTG
*
22973676 TTATATGGAATGAACTGTTACTTTGCATGAACTG
1 TTATATGGAATGAACTGTTACTTTGCACGAACTG
22973710 TTAT
1 TTAT
22973714 TCGAATATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 34 0.97
35 1 0.03
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (34 bp):
TTATATGGAATGAACTGTTACTTTGCACGAACTG
Found at i:22974768 original size:15 final size:15
Alignment explanation
Indices: 22974748--22974781 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22974738 ATATTTAAAC
*
22974748 AAATAAAAATAATGA
1 AAATAAAAACAATGA
*
22974763 AAATAAAAACAATTA
1 AAATAAAAACAATGA
22974778 AAAT
1 AAAT
22974782 TAACACACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (15 bp):
AAATAAAAACAATGA
Found at i:22993008 original size:97 final size:94
Alignment explanation
Indices: 22992792--22993026 Score: 245
Period size: 97 Copynumber: 2.4 Consensus size: 94
22992782 AATTTCTTAA
* * *
22992792 TGCCAACACCAAATGTCGTGGCACCAATAATTTCTTTTTACTTTTTCGGTGTTACCTCTTAATGT
1 TGCCAACACCAAATG-C--GACACCAATAATTT-TTTTAAATTTTTCGGTGTTACCTCTTAATGT
* *
22992857 GGAGGCACCGAAATCAGTAAAATAACTCCTTGG
62 GGAGGCACCCAAATCAATAAAATAACTCCTTGG
* * * *
22992890 AGCCAACTCCAAATATGGCGACACCAATAATTTTTTTAAATTTTTCGGTGTTGCCTCTTCATGTG
1 TGCCAACACC-AA-AT-GCGACACCAATAATTTTTTTAAATTTTTCGGTGTTACCTCTTAATGTG
* * *
22992955 GAGGCACCCAAATCAATAAAAAATTATTTCTCTGG
63 GAGGCACCCAAATCAAT--AAAATAACTCCT-TGG
22992990 TGCCAACACCAAATGCGACGGCACCAATAATTTTTTT
1 TGCCAACACCAAATGCGA---CACCAATAATTTTTTT
22993027 TTTACTTTCT
Statistics
Matches: 114, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
97 47 0.41
98 23 0.20
99 13 0.11
100 30 0.26
101 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (94 bp):
TGCCAACACCAAATGCGACACCAATAATTTTTTTAAATTTTTCGGTGTTACCTCTTAATGTGGAG
GCACCCAAATCAATAAAATAACTCCTTGG
Found at i:22997764 original size:22 final size:22
Alignment explanation
Indices: 22997725--22997809 Score: 82
Period size: 22 Copynumber: 3.7 Consensus size: 22
22997715 CACATTTCTC
22997725 TTTCTATT-TTTTATTTCTATTCA
1 TTTCT-TTCTTTT-TTTCTATTCA
* * * *
22997748 TTTCTCTCTCTTTTTCTAATAA
1 TTTCTTTCTTTTTTTCTATTCA
22997770 TTTCTTTTTCTTTTCTTTCTATTCA
1 TTTC--TTTCTTTT-TTTCTATTCA
22997795 TTTCTTTCTTTTTTT
1 TTTCTTTCTTTTTTT
22997810 AATTCTTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
22 16 0.32
23 16 0.32
24 6 0.12
25 12 0.24
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTCTTTCTTTTTTTCTATTCA
Found at i:22997774 original size:45 final size:45
Alignment explanation
Indices: 22997725--22997812 Score: 117
Period size: 47 Copynumber: 2.0 Consensus size: 45
22997715 CACATTTCTC
22997725 TTTC-TATT-TTTTATTTCTATTCATTTCTCTCTCTTTTTCTAATAA
1 TTTCTTATTCTTTTATTTCTATTCATTTCT-T-TCTTTTTCTAATAA
* * *
22997770 TTTCTTTTTCTTTTCTTTCTATTCATTTCTTTCTTTTTTTAAT
1 TTTCTTATTCTTTTATTTCTATTCATTTCTTTCTTTTTCTAAT
22997813 TCTTTTAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
45 15 0.39
46 4 0.11
47 19 0.50
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (45 bp):
TTTCTTATTCTTTTATTTCTATTCATTTCTTTCTTTTTCTAATAA
Found at i:22997855 original size:7 final size:7
Alignment explanation
Indices: 22997843--22997867 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22997833 CTTTTATTCA
22997843 TTTCATT
1 TTTCATT
22997850 TTTCATT
1 TTTCATT
22997857 TTTCATT
1 TTTCATT
22997864 TTTC
1 TTTC
22997868 TTATCATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTCATT
Found at i:23000388 original size:18 final size:18
Alignment explanation
Indices: 23000365--23000402 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
23000355 ATCAACTCTT
23000365 TGCCTTAACCTCTACCTC
1 TGCCTTAACCTCTACCTC
* *
23000383 TGCCTTGACCTCTAGCTC
1 TGCCTTAACCTCTACCTC
23000401 TG
1 TG
23000403 TCTCAACCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.39, G:0.13, T:0.34
Consensus pattern (18 bp):
TGCCTTAACCTCTACCTC
Found at i:23004354 original size:9 final size:9
Alignment explanation
Indices: 23004325--23004356 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
23004315 TTATTGAGTT
23004325 AATTAATTA
1 AATTAATTA
*
23004334 AACTAATTA
1 AATTAATTA
23004343 AATTAATTA
1 AATTAATTA
23004352 AATTA
1 AATTA
23004357 CTTTCTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (9 bp):
AATTAATTA
Found at i:23006601 original size:24 final size:24
Alignment explanation
Indices: 23006573--23006624 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
23006563 TTAGTAGGTC
* *
23006573 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
23006597 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
23006621 AAAT
1 AAAT
23006625 CTTTTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:23008290 original size:24 final size:24
Alignment explanation
Indices: 23008245--23008291 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
23008235 ATAAAAACTA
* *
23008245 AACCCTGAAAACCCAAAAACAAAG
1 AACCCTCAAAACACAAAAACAAAG
* *
23008269 AACCCTCAAAACATAAACACAAA
1 AACCCTCAAAACACAAAAACAAA
23008292 ATTCTCTAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.60, C:0.30, G:0.04, T:0.06
Consensus pattern (24 bp):
AACCCTCAAAACACAAAAACAAAG
Found at i:23010651 original size:94 final size:94
Alignment explanation
Indices: 23010490--23010680 Score: 355
Period size: 94 Copynumber: 2.0 Consensus size: 94
23010480 TAATTAAAAA
*
23010490 TTTCCAAAAATATATTTAAGATGTGTTTGGGTAAGGAATTTATAGGAGGGGTTTCAATTGTATCA
1 TTTCCAAAAATATACTTAAGATGTGTTTGGGTAAGGAATTTATAGGAGGGGTTTCAATTGTATCA
23010555 AGGTTTTTAAAATTCTAAAAATGAATTTG
66 AGGTTTTTAAAATTCTAAAAATGAATTTG
* *
23010584 TTTCCCAAAATATACTTAAGATGTGTTTGGGTAAGGAATTTATAGGAGGGGTTTCATTTGTATCA
1 TTTCCAAAAATATACTTAAGATGTGTTTGGGTAAGGAATTTATAGGAGGGGTTTCAATTGTATCA
23010649 AGGTTTTTAAAATTCTAAAAATGAATTTG
66 AGGTTTTTAAAATTCTAAAAATGAATTTG
23010678 TTT
1 TTT
23010681 GTTTGGGTAA
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (94 bp):
TTTCCAAAAATATACTTAAGATGTGTTTGGGTAAGGAATTTATAGGAGGGGTTTCAATTGTATCA
AGGTTTTTAAAATTCTAAAAATGAATTTG
Found at i:23033486 original size:3 final size:3
Alignment explanation
Indices: 23033478--23033515 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
23033468 GTGCATCCAT
23033478 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
23033516 GTAACACCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:23035456 original size:41 final size:40
Alignment explanation
Indices: 23035386--23035528 Score: 133
Period size: 41 Copynumber: 3.5 Consensus size: 40
23035376 GACATAAAGT
* * * * *
23035386 CTGCTAGGCACAAAGCCAGATACATTTCACCGGCACAAAGC
1 CTGCTAGACATAAAGCCTGATATAATTCACCGGCAC-AAGC
* *
23035427 CTGCTAGACATAAAGTCTGATATAATTCACCGGCACTGAGC
1 CTGCTAGACATAAAGCCTGATATAATTCACCGGCAC-AAGC
* * * **
23035468 CTACTAGGCATAAAGCCTGATGTAATTCACCAACATCAAGC
1 CTGCTAGACATAAAGCCTGATATAATTCACCGGCA-CAAGC
* *
23035509 CTGCTAGGCATTAAGCCTGA
1 CTGCTAGACATAAAGCCTGA
23035529 AAATCTCAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
41 83 0.99
42 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (40 bp):
CTGCTAGACATAAAGCCTGATATAATTCACCGGCACAAGC
Found at i:23035889 original size:61 final size:60
Alignment explanation
Indices: 23035794--23035913 Score: 152
Period size: 61 Copynumber: 2.0 Consensus size: 60
23035784 TATGTGCATA
** * *
23035794 TATATATATAATTCATAATACTATGTTCAACTCAAAGAACTTATATCATACATTCAAACTT
1 TATATATATAATTCATAATACTAAATTCAACTC-AAGAAATTAAATCATACATTCAAACTT
* * *
23035855 TATATATATAATTCATAACT-TTAAATTCAACTCAAGAAATTAAATCTTACATTCGAACT
1 TATATATATAATTCATAA-TACTAAATTCAACTCAAGAAATTAAATCATACATTCAAACT
23035914 ACATATTCAT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 22 0.43
61 28 0.55
62 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.38
Consensus pattern (60 bp):
TATATATATAATTCATAATACTAAATTCAACTCAAGAAATTAAATCATACATTCAAACTT
Found at i:23037101 original size:14 final size:15
Alignment explanation
Indices: 23037082--23037110 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
23037072 TCACGAAACT
23037082 TTCACACAT-ATAAA
1 TTCACACATAATAAA
23037096 TTCACACATAATAAA
1 TTCACACATAATAAA
23037111 CACAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:23037209 original size:3 final size:3
Alignment explanation
Indices: 23037201--23037253 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
23037191 GGCTGTTACA
23037201 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
23037249 TTT CT
1 CTT CT
23037254 CGTCTCTGAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
CTT
Found at i:23040512 original size:18 final size:18
Alignment explanation
Indices: 23040489--23040523 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23040479 TCAAGTCTTT
* *
23040489 TATTTTGATTTTCTTATG
1 TATTTTAATTTTATTATG
23040507 TATTTTAATTTTATTAT
1 TATTTTAATTTTATTAT
23040524 CCACCTCCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.69
Consensus pattern (18 bp):
TATTTTAATTTTATTATG
Found at i:23044651 original size:21 final size:21
Alignment explanation
Indices: 23044627--23044667 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
23044617 TAAAAGAGTC
23044627 TATTTATAGGCTAAATTCATT
1 TATTTATAGGCTAAATTCATT
*
23044648 TATTTATAGGTTAAATTCAT
1 TATTTATAGGCTAAATTCAT
23044668 ATGTCAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (21 bp):
TATTTATAGGCTAAATTCATT
Found at i:23045731 original size:21 final size:21
Alignment explanation
Indices: 23045686--23045733 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
23045676 AAACTTCCTC
23045686 TCTT-CTTTTTTTTCTTCGTT
1 TCTTCCTTTTTTTTCTTCGTT
*
23045706 T-TTCCTTTTTCTTTCTT-TTT
1 TCTTCCTTTTT-TTTCTTCGTT
23045726 TCTTCCTT
1 TCTTCCTT
23045734 CCCTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 2 0.08
20 10 0.42
21 12 0.50
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.75
Consensus pattern (21 bp):
TCTTCCTTTTTTTTCTTCGTT
Found at i:23052288 original size:6 final size:6
Alignment explanation
Indices: 23052277--23052324 Score: 55
Period size: 6 Copynumber: 7.8 Consensus size: 6
23052267 TCACTATTTG
23052277 CTTTTT CTTTTT CATTTTT C-TTTT CTTTTT C-TTTT CAATTTTT CTTTT
1 CTTTTT CTTTTT C-TTTTT CTTTTT CTTTTT CTTTTT C--TTTTT CTTTT
23052325 CTTGCTCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
5 10 0.27
6 16 0.43
7 6 0.16
8 5 0.14
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (6 bp):
CTTTTT
Found at i:23052296 original size:13 final size:12
Alignment explanation
Indices: 23052278--23052325 Score: 71
Period size: 13 Copynumber: 3.9 Consensus size: 12
23052268 CACTATTTGC
23052278 TTTTTCTTTTTCA
1 TTTTTC-TTTTCA
23052291 TTTTTCTTTTC-
1 TTTTTCTTTTCA
23052302 TTTTTCTTTTCAA
1 TTTTTCTTTTC-A
23052315 TTTTTCTTTTC
1 TTTTTCTTTTC
23052326 TTGCTCATTC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.33
12 5 0.15
13 17 0.52
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTCTTTTCA
Found at i:23052304 original size:24 final size:24
Alignment explanation
Indices: 23052277--23052327 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 24
23052267 TCACTATTTG
23052277 CTTTTTCTTTTTC-ATTTTTCTTTT
1 CTTTTTC-TTTTCAATTTTTCTTTT
23052301 CTTTTTCTTTTCAATTTTTCTTTT
1 CTTTTTCTTTTCAATTTTTCTTTT
23052325 CTT
1 CTT
23052328 GCTCATTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (24 bp):
CTTTTTCTTTTCAATTTTTCTTTT
Found at i:23055635 original size:36 final size:36
Alignment explanation
Indices: 23055531--23055667 Score: 170
Period size: 37 Copynumber: 3.7 Consensus size: 36
23055521 CCTTAGATGT
23055531 GTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAG
1 GTCTATCCCAACC-TTTTTAAAGGTTGCCTTAGACAG
23055568 GTCTATCCTC-ACACTTTTTAAAGGTTGCCTTAGACAAG
1 GTCTATCC-CAAC-CTTTTTAAAGGTTGCCTTAGAC-AG
* **
23055606 GTCTATCCCAACCATTTT-AAGGTTGCCTTAGATGG
1 GTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAG
* *
23055641 GTTTATCCCAACCTTTTTTAAATGTTG
1 GTCTATCCCAACC-TTTTTAAAGGTTG
23055668 GCATTGACTA
Statistics
Matches: 88, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
35 13 0.15
36 18 0.20
37 43 0.49
38 14 0.16
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (36 bp):
GTCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAG
Found at i:23058077 original size:39 final size:41
Alignment explanation
Indices: 23058034--23058123 Score: 130
Period size: 39 Copynumber: 2.2 Consensus size: 41
23058024 TCAATTTATA
* * * *
23058034 TTTAATATAATAAAATATTTATTATA-TT-TATTTGTGTTT
1 TTTAATATAATAAAACATTTATTATACTTAGAGTAGTGTTT
23058073 TTTAATATAATAAAACATTTATTATACTTAGAGTAGTGTTT
1 TTTAATATAATAAAACATTTATTATACTTAGAGTAGTGTTT
23058114 TTTAATATAA
1 TTTAATATAA
23058124 ATATTTTTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 25 0.56
40 2 0.04
41 18 0.40
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (41 bp):
TTTAATATAATAAAACATTTATTATACTTAGAGTAGTGTTT
Found at i:23063897 original size:20 final size:19
Alignment explanation
Indices: 23063866--23063940 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 19
23063856 TTTTTTACGG
23063866 ATACTAAAATTTCTAACTAA
1 ATAC-AAAATTTCTAACTAA
*
23063886 ATACAAATATTTC-AGA-TGA
1 ATACAAA-ATTTCTA-ACTAA
23063905 ATACCAAAATTTCTAACTAA
1 ATA-CAAAATTTCTAACTAA
23063925 ATACATAAATTTCTAA
1 ATACA-AAATTTCTAA
23063941 TGGATGCCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
19 17 0.36
20 30 0.64
ACGTcount: A:0.49, C:0.15, G:0.03, T:0.33
Consensus pattern (19 bp):
ATACAAAATTTCTAACTAA
Found at i:23063976 original size:25 final size:25
Alignment explanation
Indices: 23063931--23063978 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23063921 CTAAATACAT
* **
23063931 AAATTTCTAATGGATGCCAAAATCA
1 AAATTTATAATGGATAACAAAATCA
23063956 AAATTTATAATGGATAACAAAAT
1 AAATTTATAATGGATAACAAAAT
23063979 TATATAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.29
Consensus pattern (25 bp):
AAATTTATAATGGATAACAAAATCA
Found at i:23066283 original size:14 final size:15
Alignment explanation
Indices: 23066266--23066299 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
23066256 GAGTAAGGTA
23066266 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
23066280 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
*
23066295 TAATA
1 AAATA
23066300 ATAGTTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:23067299 original size:13 final size:14
Alignment explanation
Indices: 23067263--23067319 Score: 61
Period size: 13 Copynumber: 4.4 Consensus size: 14
23067253 GGCAGTGACG
23067263 GAAAAA-AGA-AAA
1 GAAAAAGAGAGAAA
23067275 GAAAAAGAGAGAAA
1 GAAAAAGAGAGAAA
*
23067289 GAGAAAG-GAGAAA
1 GAAAAAGAGAGAAA
*
23067302 GAAAGAGA-AGAAA
1 GAAAAAGAGAGAAA
23067315 -AAAAA
1 GAAAAA
23067320 TAGAAAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
12 10 0.26
13 19 0.50
14 9 0.24
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
GAAAAAGAGAGAAA
Found at i:23067306 original size:17 final size:16
Alignment explanation
Indices: 23067267--23067327 Score: 56
Period size: 17 Copynumber: 3.9 Consensus size: 16
23067257 GTGACGGAAA
23067267 AAAGAAA-AGAAAAAG
1 AAAGAAAGAGAAAAAG
* *
23067282 AGAGAAAGAGAAAGGAG
1 AAAGAAAGAGAAA-AAG
*
23067299 AAAGAAAGAGAAGAA-
1 AAAGAAAGAGAAAAAG
*
23067314 AAA-AAATAGAAAAA
1 AAAGAAAGAGAAAAA
23067328 ATAAGGTATT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
14 9 0.24
15 9 0.24
16 6 0.16
17 13 0.35
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (16 bp):
AAAGAAAGAGAAAAAG
Found at i:23067675 original size:36 final size:36
Alignment explanation
Indices: 23067543--23067700 Score: 115
Period size: 36 Copynumber: 4.3 Consensus size: 36
23067533 AAACTAATAT
*** *
23067543 TATTATTATTGTTAGTTATTAGGATTAGTAAAAACCC
1 TATTATTATTGTTAGTTATTATTTTTAGTAAAAA-AC
* *** * *
23067580 TAATTATTATT-TTAGTTAGTATGATTGTTAGTTTTTACAT
1 T-ATTATTATTGTTAGTTA-T-T-ATTTTTAG-TAAAAAAC
**
23067620 TA-TATTATTGTTAGTTATTATTTTTAGTAAAACTC
1 TATTATTATTGTTAGTTATTATTTTTAGTAAAAAAC
*
23067655 TAATTATTATTTTTAG-TATTATTTTTAGTAAAAAAC
1 T-ATTATTATTGTTAGTTATTATTTTTAGTAAAAAAC
23067691 TATTATTATT
1 TATTATTATT
23067701 ATTATTGTGT
Statistics
Matches: 95, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
35 13 0.14
36 27 0.28
37 20 0.21
38 18 0.19
39 9 0.09
40 6 0.06
41 2 0.02
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.53
Consensus pattern (36 bp):
TATTATTATTGTTAGTTATTATTTTTAGTAAAAAAC
Found at i:23071253 original size:159 final size:159
Alignment explanation
Indices: 23070698--23071585 Score: 1447
Period size: 160 Copynumber: 5.6 Consensus size: 159
23070688 ACTTCAAAAC
* * *
23070698 AAATTTAGTAAAAAACCCTTAGTTTGGCCATTTGTTCGTATTTTTCTTTTTTCCCAGATTTTATT
1 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGGATTTTATT
* *
23070763 ACTTTCAAAAAATATACTATTTTCATATTTTATTATTTTATAATATTTTAGTACATAATGTTTGA
66 ACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTGA
23070828 AATGTATTAATTTAGTGTGTTTTTTTTTATAT
131 AATGTATTAATTTAGTGTG---TTTTTTATAT
* *
23070860 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTTGTATTTTTCTTTTTTCTCGGATTTTATT
1 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGGATTTTATT
* * *
23070925 ACTTTTAAAAAATATATTATTTTTGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTGA
66 ACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTGA
23070990 AATGTATTAATTTAGTGTGTTTTTTATAT
131 AATGTATTAATTTAGTGTGTTTTTTATAT
* * *
23071019 AAATTTAGTAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCTGTATCTTAT
1 AAATTTAGT-AAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGGATTTTAT
*
23071084 TACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATTTTTG
65 TACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTG
23071149 AAATGTATTAATTTAGTGTGTTTTTTATAT
130 AAATGTATTAATTTAGTGTGTTTTTTATAT
*
23071179 AAATTTAGTAAAAAACTCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGGATTTTATT
1 AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGGATTTTATT
*
23071244 ACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATTATGTTTGA
66 ACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTGA
23071309 AATGTATTAATTTAGTGTGTTTTTTATAT
131 AATGTATTAATTTAGTGTGTTTTTTATAT
* * * * *
23071338 AAATTTAGTAAAAAAACCATTATTTTGGCCCTTTGTCCGTATTTTTATTTTTTCCCGTATCTTAT
1 AAATTTAGT-AAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGGATTTTAT
*
23071403 TACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATATTTG
65 TACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTG
23071468 AAATGTATTAATTTAGTGTGTTTTTTATAT
130 AAATGTATTAATTTAGTGTGTTTTTTATAT
* * * *
23071498 AAATTTAGTAAAAAAATCCTTATTTTGGCCATTTGTTCGTATTTTTCTTATTTT--TGAATTTTA
1 AAATTTAGT-AAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTT-TTTTCCCGGATTTTA
**
23071561 TTACTTTCAGTAAATATACTATTTT
64 TTACTTTCAAAAAATATACTATTTT
23071586 TTTTATTTCT
Statistics
Matches: 680, Mismatches: 43, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
159 201 0.30
160 336 0.49
161 4 0.01
162 139 0.20
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (159 bp):
AAATTTAGTAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGGATTTTATT
ACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATGTTTGA
AATGTATTAATTTAGTGTGTTTTTTATAT
Found at i:23071611 original size:319 final size:319
Alignment explanation
Indices: 23070698--23071586 Score: 1473
Period size: 319 Copynumber: 2.8 Consensus size: 319
23070688 ACTTCAAAAC
* * *
23070698 AAATTTAGT-AAAAAACCCTTAGTTTGGCCATTTGTTCGTATTTTTCTTTTTTCCCAG-ATTTTA
1 AAATTTAGTAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCC-GTATCTTA
* * *
23070761 TTACTTTCAAAAAATATACTATTTTCATATTTTATTATTTTATAATATTTTAGTACATAATGTTT
65 TTACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATATTT
*
23070826 GAAATGTATTAATTTAGTGTGTTTTTTTTTATATAAATTTAGT-AAAAAACCCTTATTTTGGCCC
130 GAAATGTATTAATTTAGTGTG---TTTTTTATATAAATTTAGTAAAAAAATCCTTATTTTGGCCC
* * *
23070890 TTTGTTTGTATTTTTCTTTTTTCTCGGATTTTATTACTTTTAAAAAATATATTATTTTTGTATTT
192 TTTGTTCGTATTTTTCTTTTTTCT-GGATTTTATTACTTTCAAAAAATATACTATTTTTGTATTT
23070955 TATTATTTTATATTATTTTAGTACATAATGTTTGAAATGTATTAATTTAGTGTGTTTTTTATAT
256 TATTATTTTATATTATTTTAGTACATAATGTTTGAAATGTATTAATTTAGTGTGTTTTTTATAT
*
23071019 AAATTTAGTAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCTGTATCTTAT
1 AAATTTAGTAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGTATCTTAT
*
23071084 TACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATTTTTG
66 TACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATATTTG
*
23071149 AAATGTATTAATTTAGTGTGTTTTTTATATAAATTTAGTAAAAAACT-CTTATTTTGGCCCTTTG
131 AAATGTATTAATTTAGTGTGTTTTTTATATAAATTTAGTAAAAAAATCCTTATTTTGGCCCTTTG
* *
23071213 TTCGTATTTTTCTTTTTTCCCGGATTTTATTACTTTCAAAAAATATACTATTTTCGTATTTTATT
196 TTCGTATTTTTCTTTTTT-CTGGATTTTATTACTTTCAAAAAATATACTATTTTTGTATTTTATT
*
23071278 ATTTTATATTATTTTAGTACATTATGTTTGAAATGTATTAATTTAGTGTGTTTTTTATAT
260 ATTTTATATTATTTTAGTACATAATGTTTGAAATGTATTAATTTAGTGTGTTTTTTATAT
* * *
23071338 AAATTTAGTAAAAAAACCATTATTTTGGCCCTTTGTCCGTATTTTTATTTTTTCCCGTATCTTAT
1 AAATTTAGTAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGTATCTTAT
23071403 TACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATATTTG
66 TACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATATTTG
*
23071468 AAATGTATTAATTTAGTGTGTTTTTTATATAAATTTAGTAAAAAAATCCTTATTTTGGCCATTTG
131 AAATGTATTAATTTAGTGTGTTTTTTATATAAATTTAGTAAAAAAATCCTTATTTTGGCCCTTTG
* **
23071533 TTCGTATTTTTCTTATTTT-TGAATTTTATTACTTTCAGTAAATATACTATTTTT
196 TTCGTATTTTTCTT-TTTTCTGGATTTTATTACTTTCAAAAAATATACTATTTTT
23071587 TTTATTTCTT
Statistics
Matches: 535, Mismatches: 27, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
319 354 0.66
320 36 0.07
321 14 0.03
322 131 0.24
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.54
Consensus pattern (319 bp):
AAATTTAGTAAAAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTTTTTCCCGTATCTTAT
TACTTTCAAAAAATATACTATTTTCGTATTTTATTATTTTATATTATTTTAGTACATAATATTTG
AAATGTATTAATTTAGTGTGTTTTTTATATAAATTTAGTAAAAAAATCCTTATTTTGGCCCTTTG
TTCGTATTTTTCTTTTTTCTGGATTTTATTACTTTCAAAAAATATACTATTTTTGTATTTTATTA
TTTTATATTATTTTAGTACATAATGTTTGAAATGTATTAATTTAGTGTGTTTTTTATAT
Done.