Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 83 of 189
Found at i:23071721 original size:24 final size:25
Alignment explanation
Indices: 23071676--23071726 Score: 59
Period size: 28 Copynumber: 2.0 Consensus size: 25
23071666 ACTCATTACA
23071676 ACATGCTAAATAAATTTCATAAAAAAAT
1 ACATGCTAAATAAA--T-ATAAAAAAAT
*
23071704 ACATGCTAAATAAA-ATAATAAAA
1 ACATGCTAAATAAATATAAAAAAA
23071727 CATATAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 8 0.36
28 14 0.64
ACGTcount: A:0.61, C:0.10, G:0.04, T:0.25
Consensus pattern (25 bp):
ACATGCTAAATAAATATAAAAAAAT
Found at i:23071883 original size:20 final size:20
Alignment explanation
Indices: 23071877--23071919 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
23071867 CTTTCCTTTT
* *
23071877 CTTTCTTTTTCTTTCTTCTC
1 CTTTCCTTTTCTATCTTCTC
*
23071897 CTTTGCTTTTCTATCTTCTC
1 CTTTCCTTTTCTATCTTCTC
23071917 CTT
1 CTT
23071920 CAGCCGAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.02, C:0.30, G:0.02, T:0.65
Consensus pattern (20 bp):
CTTTCCTTTTCTATCTTCTC
Found at i:23071997 original size:27 final size:27
Alignment explanation
Indices: 23071949--23072011 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
23071939 TTATAATGGG
* * * *
23071949 TGGTGCCGCCTGTGGCAGTGGCACCTT
1 TGGTGCCGCCTCTGCCACTGGCACCTC
23071976 TGGTGCCGCCTCTGCCACTGGCACCTC
1 TGGTGCCGCCTCTGCCACTGGCACCTC
23072003 TGGTGCCGC
1 TGGTGCCGC
23072012 TTGTGGCAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.06, C:0.37, G:0.33, T:0.24
Consensus pattern (27 bp):
TGGTGCCGCCTCTGCCACTGGCACCTC
Found at i:23072461 original size:29 final size:29
Alignment explanation
Indices: 23072401--23072463 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
23072391 TAAAGGTTTA
**
23072401 TTTTAGTAAATTTTAAAAAAATGGTCTAT
1 TTTTAGTAAATTTTAAAAAAATGACCTAT
23072430 TTTTA-TAATATTTTAAAAAAATTGACCT-T
1 TTTTAGTAA-ATTTTAAAAAAA-TGACCTAT
23072459 TTTTA
1 TTTTA
23072464 AAAACTTAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 3 0.10
29 23 0.77
30 4 0.13
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (29 bp):
TTTTAGTAAATTTTAAAAAAATGACCTAT
Found at i:23073932 original size:3 final size:3
Alignment explanation
Indices: 23073924--23073949 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
23073914 ATCTAATATA
23073924 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
23073950 GTGTTTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:23077811 original size:13 final size:13
Alignment explanation
Indices: 23077793--23077817 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23077783 TATGTTACTA
23077793 AATTATAATATTT
1 AATTATAATATTT
23077806 AATTATAATATT
1 AATTATAATATT
23077818 AAAATTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTATAATATTT
Found at i:23077937 original size:26 final size:26
Alignment explanation
Indices: 23077908--23077998 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
23077898 AAAAAACTAT
*
23077908 TATTAAATTATATTTAATAATAATTA
1 TATTAAATTATATTAAATAATAATTA
* *
23077934 TATTAAAATATGATTAAATTATTTATTATTTA
1 TATTAAATTAT-ATTAAA-TA---A-TAATTA
*
23077966 TATTAAATTAAATTAAATAATAATCT-
1 TATTAAATTATATTAAATAATAAT-TA
23077992 TATTAAA
1 TATTAAA
23077999 ATTTAATAAC
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
26 20 0.38
27 7 0.13
28 2 0.04
30 2 0.04
31 7 0.13
32 14 0.27
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (26 bp):
TATTAAATTATATTAAATAATAATTA
Found at i:23079305 original size:16 final size:16
Alignment explanation
Indices: 23079284--23079320 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
23079274 TTGGTTTGCT
23079284 GTAATGGAATAGAGCC
1 GTAATGGAATAGAGCC
*
23079300 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGCC
23079316 GTAAT
1 GTAAT
23079321 AGGTAATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.08, G:0.32, T:0.22
Consensus pattern (16 bp):
GTAATGGAATAGAGCC
Found at i:23079389 original size:44 final size:46
Alignment explanation
Indices: 23079302--23079394 Score: 154
Period size: 44 Copynumber: 2.1 Consensus size: 46
23079292 ATAGAGCCGT
23079302 AATGGAATAGAGGCGTAATAGGTAATTCTTATATTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTATATTTGGTTGAATGG
* *
23079348 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTATATTTGGTTGAATGG
23079392 AAT
1 AAT
23079395 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 23 0.51
45 3 0.07
46 19 0.42
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTATATTTGGTTGAATGG
Found at i:23079390 original size:39 final size:44
Alignment explanation
Indices: 23079302--23079407 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 44
23079292 ATAGAGCCGT
23079302 AATGGAATAGAGGCGTAATAGGTAATTCTTATATTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTATATTTGGTT--ATGG
* *
23079348 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T-G
1 AATGGAATAGAGGCGTAATAGGTAATTCTTATATTTGGTTATGG
*
23079387 AATGGAATAGAGGTGTAATAG
1 AATGGAATAGAGGCGTAATAG
23079408 CATAAGTAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
39 19 0.34
40 2 0.04
43 1 0.02
44 12 0.21
45 3 0.05
46 19 0.34
ACGTcount: A:0.31, C:0.04, G:0.31, T:0.34
Consensus pattern (44 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTATATTTGGTTATGG
Found at i:23079606 original size:18 final size:17
Alignment explanation
Indices: 23079554--23079606 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 17
23079544 TTTTTATTAA
23079554 ATATAATTTAATAAAAAT
1 ATATAATTTAAT-AAAAT
23079572 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
23079589 ATATGAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
23079607 CATAATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 9 0.27
18 24 0.73
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23079670 original size:15 final size:15
Alignment explanation
Indices: 23079652--23079711 Score: 58
Period size: 16 Copynumber: 4.3 Consensus size: 15
23079642 TCTTATTATT
23079652 AAATATAATTTAAT-
1 AAATATAATTTAATA
*
23079666 AAA-AT-A-TT-ATT
1 AAATATAATTTAATA
23079677 AAATATAATTTAATAA
1 AAATATAATTTAAT-A
*
23079693 AAATATAATTTGATA
1 AAATATAATTTAATA
23079708 AAAT
1 AAAT
23079712 TCTAGTATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
10 2 0.05
11 5 0.13
12 3 0.08
13 3 0.08
14 5 0.13
15 7 0.18
16 13 0.34
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
AAATATAATTTAATA
Found at i:23079679 original size:25 final size:25
Alignment explanation
Indices: 23079645--23079694 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
23079635 TTAAAAGTCT
23079645 TATTATTAAATATAATTTAATAAAA
1 TATTATTAAATATAATTTAATAAAA
23079670 TATTATTAAATATAATTTAATAAAA
1 TATTATTAAATATAATTTAATAAAA
23079695 ATATAATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TATTATTAAATATAATTTAATAAAA
Found at i:23079698 original size:16 final size:16
Alignment explanation
Indices: 23079677--23079710 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
23079667 AAATATTATT
23079677 AAATATAATTTAATAA
1 AAATATAATTTAATAA
*
23079693 AAATATAATTTGATAA
1 AAATATAATTTAATAA
23079709 AA
1 AA
23079711 TTCTAGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATATAATTTAATAA
Found at i:23079712 original size:26 final size:25
Alignment explanation
Indices: 23079649--23079712 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
23079639 AAGTCTTATT
* *
23079649 ATTAAATATAATTTAATAAAATATT
1 ATTAAATAAAATTTAATAAAATATA
*
23079674 ATTAAATATAATTTAATAAAAATATA
1 ATTAAATAAAATTTAAT-AAAATATA
**
23079700 ATTTGATAAAATT
1 ATTAAATAAAATT
23079713 CTAGTATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 17 0.50
26 17 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (25 bp):
ATTAAATAAAATTTAATAAAATATA
Found at i:23079785 original size:22 final size:21
Alignment explanation
Indices: 23079741--23079785 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
23079731 TATATGAATT
*
23079741 TACTAAAATCATAATATATAA
1 TACTAAAATCATAATATAAAA
* *
23079762 TACTATAAATTATAATTTAAAA
1 TACTA-AAATCATAATATAAAA
23079784 TA
1 TA
23079786 ATTATTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.38
Consensus pattern (21 bp):
TACTAAAATCATAATATAAAA
Found at i:23079790 original size:16 final size:16
Alignment explanation
Indices: 23079769--23079850 Score: 52
Period size: 16 Copynumber: 5.4 Consensus size: 16
23079759 TAATACTATA
23079769 AATTATAATTTAAAAT
1 AATTATAATTTAAAAT
*
23079785 AATTATTA-TTAAATAT
1 AATTATAATTTAAA-AT
*
23079801 AATT-TAA-TAAAAAT
1 AATTATAATTTAAAAT
*
23079815 -A-TATAATTTGATAA-
1 AATTATAATTT-AAAAT
*
23079829 AATTATAGTATTAAAAT
1 AATTATAAT-TTAAAAT
23079846 -ATTAT
1 AATTAT
23079851 TATATGAATT
Statistics
Matches: 51, Mismatches: 7, Indels: 16
0.69 0.09 0.22
Matches are distributed among these distances:
12 1 0.02
13 4 0.08
14 3 0.06
15 15 0.29
16 26 0.51
17 2 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
AATTATAATTTAAAAT
Found at i:23079820 original size:18 final size:18
Alignment explanation
Indices: 23079797--23079835 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
23079787 TTATTATTAA
23079797 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
* *
23079815 ATATAATTTGATAAAATT
1 ATATAATTTAATAAAAAT
23079833 ATA
1 ATA
23079836 GTATTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:23079839 original size:120 final size:119
Alignment explanation
Indices: 23079534--23079925 Score: 503
Period size: 120 Copynumber: 3.3 Consensus size: 119
23079524 TTAATCATAT
* * * *
23079534 TTTAACATAATTTTTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTGATAAAAT-TAT--A-GT
* * * * * * *
23079599 ACTAAAATCA-TAATATAT-AATACTA-TAAAAT-ATATTTTAAAAGTCTTATTATTAAATATAA
62 ATTAAAAT-ATTATTATATGAAT-TTACTAAAATCATAATATATAA----TACTA-TAAATATAA
*
23079660 TTTAATAA-AA-TATTATTAAATATAATTTAAT-AAAA-ATATAATTTGATAAAATTCTAGTATT
1 TTTAA-AATAATTATTATTAAATATAATTTAATAAAAATATATAATTTGATAAAATTATAGTATT
23079721 AAAATATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAATTATAA
65 AAAATATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAA-TATAA
23079777 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTGATAAAATTATAGTATTA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTGATAAAATTATAGTATTA
23079842 AAATATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAATATAA
66 AAATATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAATATAA
23079896 TTTAAAATAATTATTATTAAATATAATTTA
1 TTTAAAATAATTATTATTAAATATAATTTA
23079926 TAATCTATTT
Statistics
Matches: 243, Mismatches: 13, Indels: 27
0.86 0.05 0.10
Matches are distributed among these distances:
116 6 0.02
117 16 0.07
118 22 0.09
119 56 0.23
120 85 0.35
121 8 0.03
122 2 0.01
123 16 0.07
124 4 0.02
125 20 0.08
126 7 0.03
127 1 0.00
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (119 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTGATAAAATTATAGTATTA
AAATATTATTATATGAATTTACTAAAATCATAATATATAATACTATAAATATAA
Found at i:23079904 original size:21 final size:21
Alignment explanation
Indices: 23079861--23079904 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
23079851 TATATGAATT
*
23079861 TACTAAAATCATAATATATAA
1 TACTAAAATCATAATATAAAA
*
23079882 TACTATAAAT-ATAATTTAAAA
1 TACTA-AAATCATAATATAAAA
23079903 TA
1 TA
23079905 ATTATTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (21 bp):
TACTAAAATCATAATATAAAA
Found at i:23083833 original size:24 final size:27
Alignment explanation
Indices: 23083782--23083834 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
23083772 TATATGTAAT
*
23083782 ATTATTAAAATAATATTTTTTATTTTA
1 ATTATTAAAATAATATTTTTTATATTA
*
23083809 ATTATTTAAA-AATA-TTTTTA-ATTA
1 ATTATTAAAATAATATTTTTTATATTA
23083833 AT
1 AT
23083835 GCGGTGTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 6 0.25
26 4 0.17
27 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
ATTATTAAAATAATATTTTTTATATTA
Found at i:23091991 original size:8 final size:8
Alignment explanation
Indices: 23091968--23092010 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
23091958 GAACAAATCG
23091968 AAGAAAAT
1 AAGAAAAT
23091976 GCAAGAAAAT
1 --AAGAAAAT
23091986 AAGAAAAT
1 AAGAAAAT
23091994 AA-AAAAT
1 AAGAAAAT
*
23092001 AAAAAAAT
1 AAGAAAAT
23092009 AA
1 AA
23092011 AACCAAGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.22
8 17 0.53
10 8 0.25
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.12
Consensus pattern (8 bp):
AAGAAAAT
Found at i:23092001 original size:15 final size:15
Alignment explanation
Indices: 23091981--23092012 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23091971 AAAATGCAAG
*
23091981 AAAATAAGAAAATAA
1 AAAATAAAAAAATAA
23091996 AAAATAAAAAAATAA
1 AAAATAAAAAAATAA
23092011 AA
1 AA
23092013 CCAAGTTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.12
Consensus pattern (15 bp):
AAAATAAAAAAATAA
Found at i:23096847 original size:20 final size:20
Alignment explanation
Indices: 23096794--23096853 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 20
23096784 AATTTATAAA
*
23096794 AATAATATTTA-AAATATTT
1 AATAATTTTTATAAATATTT
*
23096813 AATAATTTTTGTAAATATTT
1 AATAATTTTTATAAATATTT
*
23096833 -CTAATTTTTCATAAATTATTT
1 AATAATTTTT-ATAAA-TATTT
23096854 GATTTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 17 0.50
20 12 0.35
21 5 0.15
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (20 bp):
AATAATTTTTATAAATATTT
Found at i:23106820 original size:43 final size:43
Alignment explanation
Indices: 23106769--23106884 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
23106759 ATGTGTTTTT
* *
23106769 CATGTAAGACCACATCAGGGACATTGGCATCGACT-TGTGTTTA
1 CATGTAAGACCACGTCAGGGACATTGGCATCGA-TATGTGATTA
* ** *
23106812 CGTGTAAGACC-CTGTTTGGGACAGTGGCATCGATATGTGATTA
1 CATGTAAGACCAC-GTCAGGGACATTGGCATCGATATGTGATTA
*
23106855 CATGTAAGACCACGTCTA-GGACGTTGGCAT
1 CATGTAAGACCACGTC-AGGGACATTGGCAT
23106885 TGTATGAGCT
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
42 2 0.03
43 55 0.95
44 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCACGTCAGGGACATTGGCATCGATATGTGATTA
Found at i:23115226 original size:22 final size:21
Alignment explanation
Indices: 23115191--23115231 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
23115181 TATATTATTT
23115191 TATGTATTTGATTTTCTTTTTA
1 TATGTATTTGATTTT-TTTTTA
23115213 TATGATATTT-ATTTTTTTT
1 TATG-TATTTGATTTTTTTT
23115232 AATTTTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 9 0.50
23 5 0.28
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.71
Consensus pattern (21 bp):
TATGTATTTGATTTTTTTTTA
Found at i:23120011 original size:21 final size:22
Alignment explanation
Indices: 23119986--23120030 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
23119976 TATTTAACCC
*
23119986 AAAATTAATTGGATTAT-AATT
1 AAAATTAATTAGATTATAAATT
*
23120007 AAAATTAATTATATTATAAATT
1 AAAATTAATTAGATTATAAATT
23120029 AA
1 AA
23120031 TATTCATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
AAAATTAATTAGATTATAAATT
Found at i:23120019 original size:16 final size:16
Alignment explanation
Indices: 23119998--23120031 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
23119988 AATTAATTGG
23119998 ATTATAATTA-AAATTA
1 ATTAT-ATTATAAATTA
23120014 ATTATATTATAAATTA
1 ATTATATTATAAATTA
23120030 AT
1 AT
23120032 ATTCATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTATATTATAAATTA
Found at i:23122881 original size:15 final size:16
Alignment explanation
Indices: 23122857--23122889 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23122847 TTTTTAAATT
23122857 AAAAATTTAAGTACTG
1 AAAAATTTAAGTACTG
*
23122873 AAAAA-TTAAGTATTG
1 AAAAATTTAAGTACTG
23122888 AA
1 AA
23122890 TTTATATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (16 bp):
AAAAATTTAAGTACTG
Found at i:23123096 original size:26 final size:25
Alignment explanation
Indices: 23123052--23123128 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 25
23123042 AATCAAAGAT
23123052 AAATAT-ATTAATTTGAATTTTTTTA
1 AAATATAATTAATTT-AATTTTTTTA
* *
23123077 AAATATAATTTATTTCAATTTTTAATA
1 AAATATAATTAATTT-AATTTTT-TTA
* * *
23123104 AAATAAAATTGAGTTAATTTTTTTA
1 AAATATAATTAATTTAATTTTTTTA
23123129 CATTAAGTGA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 8 0.19
26 21 0.49
27 14 0.33
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (25 bp):
AAATATAATTAATTTAATTTTTTTA
Found at i:23132092 original size:31 final size:31
Alignment explanation
Indices: 23132056--23132114 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
23132046 ACATGGACAT
*
23132056 TGAACTATTCGAA-AGTTTTCATTTAAGTCAC
1 TGAACTACTC-AATAGTTTTCATTTAAGTCAC
*
23132087 TGAACTACTCAATAGTTTTTATTTAAGT
1 TGAACTACTCAATAGTTTTCATTTAAGT
23132115 TACCAAGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 2 0.08
31 23 0.92
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (31 bp):
TGAACTACTCAATAGTTTTCATTTAAGTCAC
Found at i:23133689 original size:21 final size:21
Alignment explanation
Indices: 23133642--23133724 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 21
23133632 CTTTCCGTTT
* * *
23133642 AGCTCTTTCGAGCTTCAGTTT
1 AGCTCTTACGAGCTTCTGTTC
23133663 AGCTCTTACGAGCTTCTGTTC
1 AGCTCTTACGAGCTTCTGTTC
* * *
23133684 AACTCTTATGAGTTTCTGTTC
1 AGCTCTTACGAGCTTCTGTTC
* **
23133705 GGCTCTTTTGAGCTTCTGTT
1 AGCTCTTACGAGCTTCTGTT
23133725 GTAGTATCTA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.45
Consensus pattern (21 bp):
AGCTCTTACGAGCTTCTGTTC
Found at i:23137755 original size:34 final size:34
Alignment explanation
Indices: 23137717--23137788 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
23137707 ATATATAAAG
*
23137717 TATAAAGTATAAAATATATAAGTACGTACATATA
1 TATAAAGTAAAAAATATATAAGTACGTACATATA
* * * **
23137751 TATAAATTAAAAAATATGTAAGTATGTGTATATA
1 TATAAAGTAAAAAATATATAAGTACGTACATATA
23137785 TATA
1 TATA
23137789 TATAAAACAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (34 bp):
TATAAAGTAAAAAATATATAAGTACGTACATATA
Found at i:23138674 original size:21 final size:20
Alignment explanation
Indices: 23138624--23138674 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
23138614 CTGAAACAAG
*
23138624 TAAAAAAAATAAAAAGGAAAA
1 TAAAAAAGATAAAAAGG-AAA
*
23138645 TAAAGAAGATAAAAAGCG-AA
1 TAAAAAAGATAAAAAG-GAAA
23138665 TCAAAAAAGA
1 T-AAAAAAGA
23138675 ATTGGAATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 3 0.12
21 21 0.84
22 1 0.04
ACGTcount: A:0.73, C:0.04, G:0.14, T:0.10
Consensus pattern (20 bp):
TAAAAAAGATAAAAAGGAAA
Found at i:23139552 original size:40 final size:41
Alignment explanation
Indices: 23139488--23140255 Score: 239
Period size: 44 Copynumber: 17.8 Consensus size: 41
23139478 GTTTTTTCTG
*
23139488 TCTGCTCCGCTACTGCTTAGGGAGATAAGACTT-GATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGATGCGA
* * * ***
23139528 TCTGCTCCACTACTACTTAAGGAGATAAGATCTGTGGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGGATGCGA
* * * *
23139571 TCCGCTCCACTGTAACT--TTAGGGAGATAGGA-TTGGTTTCTTCTG-
1 TCTGCTCCAC--T-ACTGCTTAGGGAGATAAGACTTGG---ATGC-GA
23139615 TCTGCTCCACTACTGCTTAGGGAGATAAGACTT-GATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGATGCGA
*** *
23139655 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGGA--TGCGA
* * * ***
23139699 CCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACT--TGGATGCGA
* ** * * *
23139742 TGTGCTTTACTACTGCTTAGGAAGATAAGA-TTCGCCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTT-G--G-ATGCGA
* * ***
23139786 TCTACTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGGATGC---GA
* *** *
23139830 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGGA--TGCGA
* * * ***
23139874 CCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACT--TGGATGCGA
* * ** *
23139917 TCTGCTTCACTACTGCTTAGGAAGATAAGA-TTCACCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTT----GGATGCGA
* * ***
23139961 TCTGCTCTACTACTGCTTAGGGAGATAGGATCTACCAT-CTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGGATGC---GA
* * ***
23140005 TCCGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGGATGC---GA
* *** *
23140049 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGGA--TGCGA
* * * * ***
23140093 CCTGTTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACT--TGGATGCGA
* * * * **
23140136 TCTGCTTCACTACTGCTTAGGAAGATGAGA-TTCGCCGTCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTT-G--G-ATGCGA
* ***
23140180 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACTAT-CTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGGATGC---GA
* *
23140224 CCTGCTCCACTACTGCTTAGGGAGATAGGACT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACT
23140256 GGTAGCTTAA
Statistics
Matches: 573, Mismatches: 98, Indels: 111
0.73 0.13 0.14
Matches are distributed among these distances:
39 1 0.00
40 62 0.11
41 14 0.02
42 10 0.02
43 119 0.21
44 356 0.62
45 1 0.00
46 8 0.01
47 2 0.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (41 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGGATGCGA
Found at i:23139664 original size:84 final size:85
Alignment explanation
Indices: 23139525--23140337 Score: 360
Period size: 87 Copynumber: 9.4 Consensus size: 85
23139515 AGACTTGATG
* * * **
23139525 CGATCTGCTCCACTACTACTTAAGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACT-T
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGTGGATGCAATCCGCTCCAC--T-ACTCT
* ****
23139589 TAGGGAGATAGGAT-TGGTTTCTT
62 TAGGGAGATAAGATCTACAATCTT
* *
23139612 CTG-TCTGCTCCACTACTGCTTAGGGAGATAAGACT-T-GATGCGATCTGCTCCACTACTGCTTA
1 C-GATCTGCTCCACTACTGCTTAGGGAGATAAGACTGTGGATGCAATCCGCTCCACTACT-CTTA
23139674 GGGAGATAAGATCTACAATCTT
64 GGGAGATAAGATCTACAATCTT
* * * ** ** **
23139696 CGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATGTGCTTTACTACTGCTTA
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGACT-GTGGATGCAATCCGCTCCACTACT-CTTA
* * **
23139761 GGAAGATAAGAT-TCGCCGTCTT
64 GGGAGATAAGATCT-ACAATCTT
* * *** * *
23139783 CGATCTACTCCACTACTGCTTAGGGAGATAGGATCT-ACCAT-CTTTGATCTGCTCCACTACTGC
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGTGGATGC---AATCCGCTCCACTACT-C
* *
23139846 TTAGGGAGATAGGATCTACCATCTT
61 TTAGGGAGATAAGATCTACAATCTT
* * * ** * *
23139871 CGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTA
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGACT-GTGGATGCAATCCGCTCCACTACT-CTTA
* **
23139936 GGAAGATAAGAT-TCACCGTCTT
64 GGGAGATAAGATCT-ACAATCTT
* * *** *
23139958 CGATCTGCTCTACTACTGCTTAGGGAGATAGGATCT-ACCAT-CTTTGATCCGCTCCACTACTGC
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGTGGATGC---AATCCGCTCCACTACT-C
* *
23140021 TTAGGGAGATAGGATCTACCATCTT
61 TTAGGGAGATAAGATCTACAATCTT
* * *** * * *
23140046 TGATCTGCTCCACTACTGCTTAGGGAGATAGGATCT-ACCATCTTCGA-CCTGTTCCACTACTGC
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGTGGA--TGCAATCC-GCTCCACTACT-C
* *****
23140109 TTAGGGAGATAGGA-CTGGTGGCTT
61 TTAGGGAGATAAGATCTACAATCTT
** * * * * * ** *** *
23140133 AAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGACT-G-TGGATGCAATCCGCTCCACTACT-CTT
* *
23140198 AGGGAGATAGGATCTACTATCTT
63 AGGGAGATAAGATCTACAATCTT
* * * * * ** * *
23140221 TGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTAAATCTGCTTCACTACTACTTA
1 CGATCTGCTCCACTACTGCTTAGGGAGATAAGACT-GTGGATGCAATCCGCTCCACTACT-CTTA
* * * **
23140286 GGAAGATGAGAT-TCGCCGTCTT
64 GGGAGATAAGATCT-ACAATCTT
*
23140308 CGATCTGCTCCACTACTGCTTAAGGAGATA
1 CGATCTGCTCCACTACTGCTTAGGGAGATA
23140338 GGATCTAACA
Statistics
Matches: 577, Mismatches: 116, Indels: 66
0.76 0.15 0.09
Matches are distributed among these distances:
81 3 0.01
82 1 0.00
83 15 0.03
84 48 0.08
85 1 0.00
86 9 0.02
87 290 0.50
88 205 0.36
89 3 0.01
90 1 0.00
91 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (85 bp):
CGATCTGCTCCACTACTGCTTAGGGAGATAAGACTGTGGATGCAATCCGCTCCACTACTCTTAGG
GAGATAAGATCTACAATCTT
Found at i:23139719 original size:44 final size:44
Alignment explanation
Indices: 23139615--23140362 Score: 705
Period size: 44 Copynumber: 17.2 Consensus size: 44
23139605 GTTTCTTCTG
* ** *
23139615 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGA--TGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* *
23139655 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* ***** **
23139699 CCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* ** * * * *
23139742 TGTGCTTTACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCT-ACCATCTTCGA
* *
23139786 TCTACTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
23139830 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* ***** **
23139874 CCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* * * *
23139917 TCTGCTTCACTACTGCTTAGGAAGATAAGAT-TCACCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCT-ACCATCTTCGA
* *
23139961 TCTGCTCTACTACTGCTTAGGGAGATAGGATCTACCATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* *
23140005 TCCGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
23140049 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* * ***** **
23140093 CCTGTTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* * * * *
23140136 TCTGCTTCACTACTGCTTAGGAAGAT-GAGAT-TCGCCGTCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-ACCATCTTCGA
* *
23140180 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACTATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* *** * **
23140224 CCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTAGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
* * * * *
23140267 TCTGCTTCACTACTACTTAGGAAGAT-GAGAT-TCGCCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-ACCATCTTCGA
* * *
23140311 TCTGCTCCACTACTGCTTAAGGAGATAGGATCTAACATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
*
23140355 CCTGCTCC
1 TCTGCTCC
23140363 GCTGCAACCG
Statistics
Matches: 578, Mismatches: 110, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
40 30 0.05
41 2 0.00
42 3 0.01
43 128 0.22
44 409 0.71
45 6 0.01
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGA
Found at i:23139819 original size:131 final size:131
Alignment explanation
Indices: 23139652--23140362 Score: 879
Period size: 131 Copynumber: 5.4 Consensus size: 131
23139642 AGACTTGATG
* *
23139652 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGACCTGCTCCACTACTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTT
* * *
23139717 AGGGAGATAGGACTGGTGGCTTAAATGTGCTTTACTACTGCTTAGGAAGATAAGATTCGCCGTCT
66 AGGGAGATAGGACTGGTAGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCT
23139782 T
131 T
* * *
23139783 CGATCTACTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGATCTGCTCCACTACTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTT
*** * ** * * * * * ** *
23139848 AGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACT-GGTGGC
66 AGGGAGATAGGA-CTGGTAGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTC
23139912 TT
130 TT
** * * * * * *
23139914 AAATCTGCTTCACTACTGCTTAGGAAGATAAGAT-TCACCGTCTTCGATCTGCTCTACTACTGCT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCT-ACCATCTTCGACCTGCTCCACTACTGCT
*** * ** * * * * * *
23139978 TAGGGAGATAGGATCTACCATCTTTGATCCGCTCCACTACTGCTTAGGGAGATAGGA-TCTACCA
65 TAGGGAGATAGGA-CTGGTAGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTC-GCCG
23140042 TCTT
128 TCTT
* *
23140046 TGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGTTCCACTACTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTT
* *
23140111 AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCGCCGTCT
66 AGGGAGATAGGACTGGTAGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCT
23140176 T
131 T
* * *
23140177 TGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACTATCTTTGACCTGCTCCACTACTGCTT
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTT
* *
23140242 AGGGAGATAGGACTGGTAGCTTAAATCTGCTTCACTACTACTTAGGAAGATGAGATTCGCCGTCT
66 AGGGAGATAGGACTGGTAGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCT
23140307 T
131 T
* * *
23140308 CGATCTGCTCCACTACTGCTTAAGGAGATAGGATCTAACATCTTTGACCTGCTCC
1 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCC
23140363 GCTGCAACCG
Statistics
Matches: 503, Mismatches: 71, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
130 2 0.00
131 398 0.79
132 102 0.20
133 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (131 bp):
CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTT
AGGGAGATAGGACTGGTAGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCT
T
Found at i:23139872 original size:175 final size:175
Alignment explanation
Indices: 23139615--23140362 Score: 1019
Period size: 175 Copynumber: 4.3 Consensus size: 175
23139605 GTTTCTTCTG
* **
23139615 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGC---GATCTGCTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAT-CTTTGATCTGCTCCACTACTGCTTAG
* * *
23139675 GGAGATAAGATCTACAATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTA
65 GGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTA
* *
23139740 AATGTGCTTTACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGA
130 AATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGA
*
23139786 TCTACTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGATCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGATCTGCTCCACTACTGCTTAGG
*
23139851 GAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAA
66 GAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTAA
*
23139916 ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCACCGTCTTCGA
131 ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGA
* *
23139961 TCTGCTCTACTACTGCTTAGGGAGATAGGATCTACCATCTTTGATCCGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGATCTGCTCCACTACTGCTTAGG
* * *** * *
23140026 GAGATAGGATCTACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTC
66 GAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTAGCTTA
* * * * * ** * **
23140091 GACCTG-TTCCACTACTGCTTAGGGAGATAGGACT-GGTGGCTTAAA
130 AATCTGCTT-CACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGA
* * * *
23140136 TCTGCTTCACTACTGCTTAGGAAGAT-GAGAT-TCGCCGTCTTTGATCTGCTCCACTACTGCTTA
1 TCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-ACCATCTTTGATCTGCTCCACTACTGCTTA
* *
23140199 GGGAGATAGGATCTACTATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTT
64 GGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTT
* *
23140264 AAATCTGCTTCACTACTACTTAGGAAGATGAGATTCGCCGTCTTCGA
129 AAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGA
* * *
23140311 TCTGCTCCACTACTGCTTAAGGAGATAGGATCTAACATCTTTGACCTGCTCC
1 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGATCTGCTCC
23140363 GCTGCAACCG
Statistics
Matches: 501, Mismatches: 63, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
171 28 0.06
172 3 0.01
173 2 0.00
174 32 0.06
175 403 0.80
176 33 0.07
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (175 bp):
TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGATCTGCTCCACTACTGCTTAGG
GAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTAA
ATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGA
Found at i:23150687 original size:34 final size:33
Alignment explanation
Indices: 23150649--23150729 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 33
23150639 ATATATAAAG
23150649 TATAAAGTATAAAATATATAAGTACGTACATATA
1 TATAAA-TATAAAATATATAAGTACGTACATATA
* * * **
23150683 TATAAATTAAAAAATATGTAAGTATGTGTATATA
1 TATAAA-TATAAAATATATAAGTACGTACATATA
*
23150717 TATATATATAAAA
1 TATAAATATAAAA
23150730 CAAGATTCTT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 6 0.15
34 33 0.85
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.36
Consensus pattern (33 bp):
TATAAATATAAAATATATAAGTACGTACATATA
Found at i:23157569 original size:22 final size:22
Alignment explanation
Indices: 23157543--23157588 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
23157533 AAGCTACCCC
*
23157543 TTTTATTTTATTT-TATTTTATT
1 TTTTATATTATTTAT-TTTTATT
23157565 TTTTATATTATTTATTTTTATT
1 TTTTATATTATTTATTTTTATT
23157587 TT
1 TT
23157589 CCTAATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTATATTATTTATTTTTATT
Found at i:23157578 original size:16 final size:17
Alignment explanation
Indices: 23157548--23157583 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
23157538 ACCCCTTTTA
*
23157548 TTTTATTTTATTTTATT
1 TTTTATATTATTTTATT
23157565 TTTTATATTA-TTTATT
1 TTTTATATTATTTTATT
23157581 TTT
1 TTT
23157584 ATTTTCCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTATATTATTTTATT
Found at i:23157600 original size:22 final size:22
Alignment explanation
Indices: 23157553--23157609 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
23157543 TTTTATTTTA
*
23157553 TTTTA-TTTTATTTTTTATATT
1 TTTTATTTTTATTTTCTATATT
*
23157574 ATTTATTTTTATTTTCCTA-ATT
1 TTTTATTTTTATTTT-CTATATT
23157596 TTTTATTTATTATT
1 TTTTATTT-TTATT
23157610 CTAATACTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 4 0.13
22 19 0.63
23 7 0.23
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTATTTTTATTTTCTATATT
Found at i:23157650 original size:17 final size:18
Alignment explanation
Indices: 23157630--23157663 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23157620 GATTTTAAAT
23157630 TTATTTTAATT-TTTCTA
1 TTATTTTAATTATTTCTA
*
23157647 TTATTTTTATTATTTCT
1 TTATTTTAATTATTTCT
23157664 TTTTTACTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (18 bp):
TTATTTTAATTATTTCTA
Found at i:23160886 original size:60 final size:60
Alignment explanation
Indices: 23160793--23160986 Score: 203
Period size: 60 Copynumber: 3.2 Consensus size: 60
23160783 GCACACCAAT
* ** * *
23160793 TTGTGGACAAGCCACCAGTATTTTAGGTAAACTGCCA-AAAT-TGCAAACAAGCTGCCAGTA
1 TTGTGGACAAGCCACCAGTAATGCAGATAAACTGCCAGAAATGTG--AACAAGCTACCAGTA
* * * * *
23160853 TTGTGGACAAGCCACCAGTAATGCATATAAACTGCTAGTAATGTGGACTAGCTACCAGTA
1 TTGTGGACAAGCCACCAGTAATGCAGATAAACTGCCAGAAATGTGAACAAGCTACCAGTA
* * * * *
23160913 ATGTGAACAAGCCACCAGTAATGCAGATAAACTGCTAGTAATGTGAACTAGCTACCAGTA
1 TTGTGGACAAGCCACCAGTAATGCAGATAAACTGCCAGAAATGTGAACAAGCTACCAGTA
* *
23160973 ATGTGAACAAGCCA
1 TTGTGGACAAGCCA
23160987 TCAAAATTGC
Statistics
Matches: 118, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
60 113 0.96
61 3 0.03
62 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (60 bp):
TTGTGGACAAGCCACCAGTAATGCAGATAAACTGCCAGAAATGTGAACAAGCTACCAGTA
Found at i:23160912 original size:20 final size:20
Alignment explanation
Indices: 23160889--23160980 Score: 89
Period size: 20 Copynumber: 4.6 Consensus size: 20
23160879 ATAAACTGCT
*
23160889 AGTAATGTGGACTAGCTACC
1 AGTAATGTGAACTAGCTACC
* *
23160909 AGTAATGTGAACAAGCCACC
1 AGTAATGTGAACTAGCTACC
* * * *
23160929 AGTAATG-CAGA-TAAACTGCT
1 AGTAATGTGA-ACT-AGCTACC
23160949 AGTAATGTGAACTAGCTACC
1 AGTAATGTGAACTAGCTACC
23160969 AGTAATGTGAAC
1 AGTAATGTGAAC
23160981 AAGCCATCAA
Statistics
Matches: 55, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
19 1 0.02
20 52 0.95
21 2 0.04
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (20 bp):
AGTAATGTGAACTAGCTACC
Found at i:23160933 original size:40 final size:40
Alignment explanation
Indices: 23160889--23160977 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
23160879 ATAAACTGCT
*
23160889 AGTAATGTGGACT-AGCTACCAGTAATGTGAACAAGCCACC
1 AGTAATGTGGA-TAAACTACCAGTAATGTGAACAAGCCACC
** * * * *
23160929 AGTAATGCAGATAAACTGCTAGTAATGTGAACTAGCTACC
1 AGTAATGTGGATAAACTACCAGTAATGTGAACAAGCCACC
23160969 AGTAATGTG
1 AGTAATGTG
23160978 AACAAGCCAT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
39 1 0.03
40 38 0.97
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (40 bp):
AGTAATGTGGATAAACTACCAGTAATGTGAACAAGCCACC
Found at i:23160998 original size:60 final size:60
Alignment explanation
Indices: 23160842--23161012 Score: 245
Period size: 60 Copynumber: 2.9 Consensus size: 60
23160832 ATTGCAAACA
* * * * *
23160842 AGCTGCCAGTATTGTGGACAAGCCACCAGTAATGCATATAAACTGCTAGTAATGTGGACT
1 AGCTACCAGTAATGTGAACAAGCCACCAGTAATGCAGATAAACTGCTAGTAATGTGAACT
23160902 AGCTACCAGTAATGTGAACAAGCCACCAGTAATGCAGATAAACTGCTAGTAATGTGAACT
1 AGCTACCAGTAATGTGAACAAGCCACCAGTAATGCAGATAAACTGCTAGTAATGTGAACT
* * * *
23160962 AGCTACCAGTAATGTGAACAAGCCATCA-AAATTGCAGACAAGCTGCTAGTA
1 AGCTACCAGTAATGTGAACAAGCCACCAGTAA-TGCAGATAAACTGCTAGTA
23161013 CTTCATTCTT
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
59 2 0.02
60 99 0.98
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (60 bp):
AGCTACCAGTAATGTGAACAAGCCACCAGTAATGCAGATAAACTGCTAGTAATGTGAACT
Found at i:23166287 original size:37 final size:39
Alignment explanation
Indices: 23166228--23166302 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 39
23166218 CATGTTAACA
* *
23166228 TTTAATTGATTTTTAAAATTTAAAAA-TATTTTTTATAT
1 TTTAATTGAATTTTAAAATTTAAAAACAATTTTTTATAT
**
23166266 TTTAA-TGAATTTTAATTTTTAAAAACAATTTTTTATA
1 TTTAATTGAATTTTAAAATTTAAAAACAATTTTTTATA
23166303 ATTGTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 17 0.53
38 15 0.47
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (39 bp):
TTTAATTGAATTTTAAAATTTAAAAACAATTTTTTATAT
Found at i:23168947 original size:18 final size:18
Alignment explanation
Indices: 23168908--23168949 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
23168898 ATTTCGAATT
*
23168908 TTTTATAATTATTAAGTA
1 TTTTATAATTATTAAGGA
*
23168926 TTTTA-AATTATTTAGGA
1 TTTTATAATTATTAAGGA
23168943 GTTTTAT
1 -TTTTAT
23168950 GTTAACAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (18 bp):
TTTTATAATTATTAAGGA
Found at i:23174058 original size:2 final size:2
Alignment explanation
Indices: 23174046--23174076 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
23174036 TTTCAGTAAA
*
23174046 AG AG TG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
23174077 TGGAGGGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.48, T:0.03
Consensus pattern (2 bp):
AG
Found at i:23176263 original size:25 final size:25
Alignment explanation
Indices: 23176235--23176286 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 25
23176225 TTTAGATCTT
23176235 TGTTC-TT-TTATTTTGTTCATTTTTA
1 TGTTCATTCTTATTTTGTT--TTTTTA
23176260 TGTTCATTTCTTATTTTGTTTTTTTA
1 TGTTCA-TTCTTATTTTGTTTTTTTA
23176286 T
1 T
23176287 AGAACTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 5 0.21
26 7 0.29
27 2 0.08
28 10 0.42
ACGTcount: A:0.12, C:0.08, G:0.08, T:0.73
Consensus pattern (25 bp):
TGTTCATTCTTATTTTGTTTTTTTA
Found at i:23177122 original size:22 final size:24
Alignment explanation
Indices: 23177091--23177140 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
23177081 AGTTCCATGT
*
23177091 TTTATTATATATATATTTTATAAC
1 TTTAATATATATATATTTTATAAC
23177115 TTTAATATATATATATTTTATAAC
1 TTTAATATATATATATTTTATAAC
23177139 TT
1 TT
23177141 AAACATATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTAATATATATATATTTTATAAC
Found at i:23177154 original size:24 final size:24
Alignment explanation
Indices: 23177097--23177154 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
23177087 ATGTTTTATT
* * *
23177097 ATATATATATTTTATAACTTTAAT
1 ATATACATATTTTATAACTTAAAC
*
23177121 ATATATATATTTTATAACTTAAAC
1 ATATACATATTTTATAACTTAAAC
*
23177145 ATATGCATAT
1 ATATACATAT
23177155 GCACCTATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (24 bp):
ATATACATATTTTATAACTTAAAC
Found at i:23177154 original size:26 final size:24
Alignment explanation
Indices: 23177097--23177148 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
23177087 ATGTTTTATT
* *
23177097 ATATATATATTTTATAACTTTAAT
1 ATATATATATTTTATAACTTAAAC
23177121 ATATATATATTTTATAACTTAAAC
1 ATATATATATTTTATAACTTAAAC
23177145 ATAT
1 ATAT
23177149 GCATATGCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (24 bp):
ATATATATATTTTATAACTTAAAC
Found at i:23191396 original size:22 final size:24
Alignment explanation
Indices: 23191365--23191414 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
23191355 AGTTCCATGT
*
23191365 TTTATTATATATATATTTTATAAC
1 TTTAATATATATATATTTTATAAC
23191389 TTTAATATATATATATTTTATAAC
1 TTTAATATATATATATTTTATAAC
23191413 TT
1 TT
23191415 AAACATATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTAATATATATATATTTTATAAC
Found at i:23191422 original size:24 final size:24
Alignment explanation
Indices: 23191371--23191422 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
23191361 ATGTTTTATT
* *
23191371 ATATATATATTTTATAACTTTAAT
1 ATATATATATTTTATAACTTAAAC
23191395 ATATATATATTTTATAACTTAAAC
1 ATATATATATTTTATAACTTAAAC
23191419 ATAT
1 ATAT
23191423 GCAGATGCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (24 bp):
ATATATATATTTTATAACTTAAAC
Found at i:23192062 original size:70 final size:70
Alignment explanation
Indices: 23191944--23192074 Score: 210
Period size: 70 Copynumber: 1.9 Consensus size: 70
23191934 TCTTTTCAAA
*
23191944 CTCACGTTTTAAACGACCCCGGGAATTAAGAAGAAATCATGTCCTAACTTACTGGGCATGATCCT
1 CTCAAGTTTTAAACGACCCCGGGAATTAAGAAGAAATCATGTCCTAACTTACTGGGCATGATCCT
23192009 TTTTT
66 TTTTT
* * *
23192014 CTCAAGTTTTAAACGATCTCGGGAATTAAGAA-AAGATCGTGTCCTAACTTACTGGGCATGA
1 CTCAAGTTTTAAACGACCCCGGGAATTAAGAAGAA-ATCATGTCCTAACTTACTGGGCATGA
23192075 CCCCTTTTCT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
69 2 0.04
70 54 0.96
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30
Consensus pattern (70 bp):
CTCAAGTTTTAAACGACCCCGGGAATTAAGAAGAAATCATGTCCTAACTTACTGGGCATGATCCT
TTTTT
Found at i:23196245 original size:55 final size:57
Alignment explanation
Indices: 23196124--23196271 Score: 198
Period size: 55 Copynumber: 2.6 Consensus size: 57
23196114 ATTATGATTT
23196124 TTATT-AATTCATATTTTAATAATAATTATATTAAAAATGTTATTAAATTATATATTATA
1 TTATTAAATT-ATA-TTTAATAATAATTATATTAAAAATG-TATTAAATTATATATTATA
* *
23196183 TTATTAAATTATATTTAATAATAATTATGTTAAAATATG-ATTAAATTATTTA-T-TA
1 TTATTAAATTATATTTAATAATAATTATATTAAAA-ATGTATTAAATTATATATTATA
*
23196238 TTATTAAATTATATTTAATAATAACT-TATTAAAA
1 TTATTAAATTATATTTAATAATAATTATATTAAAA
23196272 TTTAATAATA
Statistics
Matches: 83, Mismatches: 4, Indels: 9
0.86 0.04 0.09
Matches are distributed among these distances:
54 7 0.08
55 27 0.33
56 1 0.01
57 12 0.14
58 21 0.25
59 11 0.13
60 4 0.05
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (57 bp):
TTATTAAATTATATTTAATAATAATTATATTAAAAATGTATTAAATTATATATTATA
Found at i:23196254 original size:20 final size:19
Alignment explanation
Indices: 23196163--23196254 Score: 77
Period size: 20 Copynumber: 4.9 Consensus size: 19
23196153 ATTAAAAATG
23196163 TTATTAAATTATATATTATA
1 TTATTAAATTATAT-TTATA
23196183 TTATTAAATTATATTTA-A
1 TTATTAAATTATATTTATA
* * *
23196201 -TAAT-AATTATGTTAAAATA
1 TTATTAAATTATATT--TATA
*
23196220 TGATTAAA-T-TATTTATTA
1 TTATTAAATTATATTTA-TA
23196238 TTATTAAATTATATTTA
1 TTATTAAATTATATTTA
23196255 ATAATAACTT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
16 8 0.14
17 4 0.07
18 11 0.20
19 8 0.14
20 23 0.41
21 2 0.04
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
TTATTAAATTATATTTATA
Found at i:23202218 original size:31 final size:32
Alignment explanation
Indices: 23202180--23202268 Score: 119
Period size: 32 Copynumber: 2.8 Consensus size: 32
23202170 AAATAAACAC
*
23202180 TAAAAAAATTTTAGAAAATTAAAAAAA-GTATTT
1 TAAAAATATTTTA-AAAA-TAAAAAAATGTATTT
*
23202213 TAAAAATATTTTAAAAATAAAAAAATTTATTT
1 TAAAAATATTTTAAAAATAAAAAAATGTATTT
23202245 T-AAAATATTTTTAAAAATAAAAAA
1 TAAAAATA-TTTTAAAAATAAAAAA
23202269 TATATTTATT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
31 14 0.27
32 26 0.50
33 12 0.23
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (32 bp):
TAAAAATATTTTAAAAATAAAAAAATGTATTT
Found at i:23202222 original size:11 final size:11
Alignment explanation
Indices: 23202180--23202231 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
23202170 AAATAAACAC
*
23202180 TAAAAAAATTT
1 TAAAAATATTT
* *
23202191 TAGAAA-ATTA
1 TAAAAATATTT
*
23202201 AAAAAAGTATTT
1 TAAAAA-TATTT
23202213 TAAAAATATTT
1 TAAAAATATTT
23202224 TAAAAATA
1 TAAAAATA
23202232 AAAAAATTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 18 0.55
12 8 0.24
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (11 bp):
TAAAAATATTT
Found at i:23203635 original size:3 final size:3
Alignment explanation
Indices: 23203627--23203656 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
23203617 TAATGCCATT
23203627 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
23203657 AATTCACTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:23207067 original size:32 final size:32
Alignment explanation
Indices: 23206989--23207093 Score: 86
Period size: 32 Copynumber: 3.2 Consensus size: 32
23206979 TGGTTCTGTG
* ** * * *
23206989 AAATAATAACAAATATCAAAATTTCATGTTGTG
1 AAATGATAACAAATATC-AACGTTAATTTTGTA
*
23207022 AAATCATAACAAAT-TACAACGTTAATTTTGTA
1 AAATGATAACAAATAT-CAACGTTAATTTTGTA
* * * *
23207054 AAATGATAACAAATATCAACTTTCATTTTCTT
1 AAATGATAACAAATATCAACGTTAATTTTGTA
23207086 AAATGATA
1 AAATGATA
23207094 CAACGTTAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
32 44 0.75
33 15 0.25
ACGTcount: A:0.47, C:0.11, G:0.07, T:0.35
Consensus pattern (32 bp):
AAATGATAACAAATATCAACGTTAATTTTGTA
Found at i:23209638 original size:42 final size:43
Alignment explanation
Indices: 23209579--23209697 Score: 145
Period size: 42 Copynumber: 2.8 Consensus size: 43
23209569 ATGAATTTCT
* *
23209579 GTTTAACCCTAATGGGTTTCCT-TTCAGCTCTTTTAAGCTTCA
1 GTTTAACCCTTATGGGTTTCCTGTTCAGCTCTTATAAGCTTCA
* * *
23209621 GTTTAACCCTTATGGGTTT-CTGTTCAGCTCTTATATGTTTCC
1 GTTTAACCCTTATGGGTTTCCTGTTCAGCTCTTATAAGCTTCA
* * *
23209663 GTTCAACCCTTATGGGTTT-CTGTTTAGCACTTATA
1 GTTTAACCCTTATGGGTTTCCTGTTCAGCTCTTATA
23209698 TGTCTTCTGA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.03
42 66 0.97
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.45
Consensus pattern (43 bp):
GTTTAACCCTTATGGGTTTCCTGTTCAGCTCTTATAAGCTTCA
Found at i:23209660 original size:21 final size:21
Alignment explanation
Indices: 23209636--23209706 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
23209626 ACCCTTATGG
*
23209636 GTTTCTGTTCAGCTCTTATAT
1 GTTTCTGTTCAGCACTTATAT
* * * **
23209657 GTTTCCGTTCAACCCTTATGG
1 GTTTCTGTTCAGCACTTATAT
*
23209678 GTTTCTGTTTAGCACTTATAT
1 GTTTCTGTTCAGCACTTATAT
23209699 GTCTTCTG
1 GT-TTCTG
23209707 AAAACGATGT
Statistics
Matches: 38, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
21 33 0.87
22 5 0.13
ACGTcount: A:0.14, C:0.21, G:0.17, T:0.48
Consensus pattern (21 bp):
GTTTCTGTTCAGCACTTATAT
Found at i:23211898 original size:91 final size:91
Alignment explanation
Indices: 23211743--23211954 Score: 293
Period size: 91 Copynumber: 2.3 Consensus size: 91
23211733 TGAACACTCC
* * *
23211743 AGTTTATGGATAAACCACAAGTATTTGCAGGTTAATACACTGCCAGTAGGTTGTGAATGCACAAC
1 AGTTTATGGATAAACCACCAGTATTTGCAGGTTAATACACTGCCACTAGGTTGTAAATGCACAAC
23211808 ATGTTTGCAAATAAAAG-TTGCCAGTA
66 ATGTTTGCAAATAAAAGCTT-CCAGTA
* *
23211834 AGTTTATGGATGAACCACCAGTGTTTGCAGGTTAATA-AGCTGCCACTAGGTTGTAAATGCACAA
1 AGTTTATGGATAAACCACCAGTATTTGCAGGTTAATACA-CTGCCACTAGGTTGTAAATGCACAA
* * * *
23211898 CGTGTTTGTAGATAAAAGCTTCTAGTA
65 CATGTTTGCAAATAAAAGCTTCCAGTA
* *
23211925 AGTTTGTGGATAAATCACCAGTATTTGCAG
1 AGTTTATGGATAAACCACCAGTATTTGCAG
23211955 ACTATTAAAT
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
90 1 0.01
91 103 0.97
92 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (91 bp):
AGTTTATGGATAAACCACCAGTATTTGCAGGTTAATACACTGCCACTAGGTTGTAAATGCACAAC
ATGTTTGCAAATAAAAGCTTCCAGTA
Found at i:23212163 original size:38 final size:38
Alignment explanation
Indices: 23212032--23212164 Score: 135
Period size: 38 Copynumber: 3.5 Consensus size: 38
23212022 ATAGTACAAT
* **
23212032 ACAGAAACAGTGAA-CATGCTTAACATGTATTTGGTTCA
1 ACAGTAACAGT-AAGCATGCTTAACATGTATTCAGTTCA
* ** * *
23212070 ACACTAGTAGT-AGACATGCTTAACATGTATTCAATTTA
1 ACAGTAACAGTAAG-CATGCTTAACATGTATTCAGTTCA
* * *
23212108 ACAGCAACAGTAGGCATGTTTAACATGTATTCAGTTCA
1 ACAGTAACAGTAAGCATGCTTAACATGTATTCAGTTCA
23212146 ACAGTAACAGTAAGCATGC
1 ACAGTAACAGTAAGCATGC
23212165 AACCAGTAAC
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
36 1 0.01
38 71 0.97
39 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (38 bp):
ACAGTAACAGTAAGCATGCTTAACATGTATTCAGTTCA
Found at i:23214691 original size:15 final size:15
Alignment explanation
Indices: 23214658--23214691 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
23214648 AAATCTTAAA
**
23214658 ATTATTATTATTGTT
1 ATTATTATTATTGCC
23214673 ATTATTATTATTGCC
1 ATTATTATTATTGCC
23214688 ATTA
1 ATTA
23214692 AGACTTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (15 bp):
ATTATTATTATTGCC
Found at i:23214972 original size:14 final size:13
Alignment explanation
Indices: 23214953--23214983 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
23214943 TTCTCTTCCC
23214953 TTTTTCTTTTCTT
1 TTTTTCTTTTCTT
23214966 ATTTTTCTTTTCTT
1 -TTTTTCTTTTCTT
23214980 TTTT
1 TTTT
23214984 CTAGGCCTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTCTTTTCTT
Found at i:23220055 original size:7 final size:7
Alignment explanation
Indices: 23220032--23220056 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
23220022 TCAGTTGTCA
23220032 GTTAGTT
1 GTTAGTT
23220039 GTTAGTT
1 GTTAGTT
23220046 GTTAGTT
1 GTTAGTT
23220053 GTTA
1 GTTA
23220057 AGTCAGCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.28, T:0.56
Consensus pattern (7 bp):
GTTAGTT
Found at i:23222694 original size:17 final size:16
Alignment explanation
Indices: 23222645--23222696 Score: 59
Period size: 18 Copynumber: 3.1 Consensus size: 16
23222635 ATGCAGGCCC
23222645 AGAAAAAGAAAAGAAA
1 AGAAAAAGAAAAGAAA
*
23222661 AGAAAAAGGGAAGAGAAA
1 AGAAAAA--GAAAAGAAA
*
23222679 GGAAAATAGAAAAGAAA
1 AGAAAA-AGAAAAGAAA
23222696 A
1 A
23222697 ATGAGGCATA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
16 7 0.24
17 8 0.28
18 13 0.45
19 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (16 bp):
AGAAAAAGAAAAGAAA
Found at i:23228314 original size:14 final size:14
Alignment explanation
Indices: 23228295--23228325 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
23228285 ATGATTGTTT
*
23228295 TAATCTAAATTTAC
1 TAATCTAAATTAAC
23228309 TAATCTAAATTAAC
1 TAATCTAAATTAAC
23228323 TAA
1 TAA
23228326 GAACGCGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:23229294 original size:22 final size:22
Alignment explanation
Indices: 23229265--23229332 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 22
23229255 TGCACTAATG
23229265 AACAGAGAGCACTGAAGTGCTA
1 AACAGAGAGCACTGAAGTGCTA
* * * *
23229287 TACAGAGAGTACAGATGTGCTA
1 AACAGAGAGCACTGAAGTGCTA
*
23229309 AACAGAGAGCACTGACGTGCTA
1 AACAGAGAGCACTGAAGTGCTA
23229331 AA
1 AA
23229333 TATCAGAGAG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.40, C:0.18, G:0.26, T:0.16
Consensus pattern (22 bp):
AACAGAGAGCACTGAAGTGCTA
Found at i:23230461 original size:5 final size:5
Alignment explanation
Indices: 23230451--23230523 Score: 53
Period size: 5 Copynumber: 14.6 Consensus size: 5
23230441 TATATACATA
* * *
23230451 ATAAT ATAAT AAAAT ATTAT AATAAT ATAAT ATAAT A-ACAT ACTTAT
1 ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATAAT ATA-AT A-TAAT
* *
23230498 -TAAT TTAGT A-AAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATA
23230524 TATTTTAAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
4 7 0.13
5 40 0.75
6 6 0.11
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:23230471 original size:13 final size:13
Alignment explanation
Indices: 23230450--23230488 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
23230440 ATATATACAT
23230450 AATAATATAATAA
1 AATAATATAATAA
*
23230463 AATATTATAATAA
1 AATAATATAATAA
*
23230476 TATAATATAATAA
1 AATAATATAATAA
23230489 CATACTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AATAATATAATAA
Found at i:23230472 original size:21 final size:21
Alignment explanation
Indices: 23230448--23230487 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
23230438 TTATATATAC
23230448 ATAATAATATAATAAAATATT
1 ATAATAATATAATAAAATATT
*
23230469 ATAATAATATAATATAATA
1 ATAATAATATAATAAAATA
23230488 ACATACTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAATAATATAATAAAATATT
Found at i:23233445 original size:12 final size:12
Alignment explanation
Indices: 23233422--23233459 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
23233412 TAAGTCTAAG
*
23233422 AAAATAACAATA
1 AAAATAAAAATA
*
23233434 AACATAAAAATA
1 AAAATAAAAATA
23233446 AAAAT-AAAATA
1 AAAATAAAAATA
23233457 AAA
1 AAA
23233460 CAAATGGACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:23233445 original size:18 final size:17
Alignment explanation
Indices: 23233422--23233459 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
23233412 TAAGTCTAAG
*
23233422 AAAATAACAATAAACATA
1 AAAATAAAAATAAA-ATA
23233440 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAATA
23233457 AAA
1 AAA
23233460 CAAATGGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.16
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:23234443 original size:13 final size:13
Alignment explanation
Indices: 23234427--23234451 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23234417 TAAAAATACA
23234427 TTTTAACTTGAAT
1 TTTTAACTTGAAT
23234440 TTTTAACTTGAA
1 TTTTAACTTGAA
23234452 AAAAATTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (13 bp):
TTTTAACTTGAAT
Found at i:23240809 original size:16 final size:16
Alignment explanation
Indices: 23240788--23240821 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
23240778 AAGAGGATAT
23240788 TTCTTGGGTAAGTGCA
1 TTCTTGGGTAAGTGCA
*
23240804 TTCTTGGGTAGGTGCA
1 TTCTTGGGTAAGTGCA
23240820 TT
1 TT
23240822 GTAGTCTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.32, T:0.41
Consensus pattern (16 bp):
TTCTTGGGTAAGTGCA
Found at i:23242254 original size:5 final size:5
Alignment explanation
Indices: 23242244--23242269 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
23242234 GGTAAGTTCG
23242244 TAAAT TAAAT TAAAT TAAAT TAAAT T
1 TAAAT TAAAT TAAAT TAAAT TAAAT T
23242270 CTGTTTTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAAAT
Found at i:23242492 original size:45 final size:45
Alignment explanation
Indices: 23242376--23242494 Score: 175
Period size: 45 Copynumber: 2.6 Consensus size: 45
23242366 TTCAAACGTG
* * * *
23242376 TAAGACCATAATTGAAAGACACTATGACACTATACCATAGATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATGAA
*
23242421 TAAGACCATAGTTGAAAGACACTATGGCACTATATCAAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATGAA
* *
23242466 TAAGTCCATAGTTGAAAGGCACTATGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
23242495 TCATGTCAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.23
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATGAA
Found at i:23242528 original size:45 final size:45
Alignment explanation
Indices: 23242376--23242517 Score: 169
Period size: 45 Copynumber: 3.2 Consensus size: 45
23242366 TTCAAACGTG
* * * * * *
23242376 TAAGACCATAATTGAAAGACACTATGACACTATACCATAGATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCAAAAATAAA
*
23242421 TAAGACCATAGTTGAAAGACACTATGGCACTATATCAAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATATCAAAAATAAA
* * * *
23242466 TAAGTCCATAGTTGAAAGGCACTATGGCA-TCATGTCAGAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACT-ATATCAAAAATAAA
23242511 TAAGACC
1 TAAGACC
23242518 GTGGCTGAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
44 1 0.01
45 84 0.99
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATATCAAAAATAAA
Found at i:23248291 original size:34 final size:34
Alignment explanation
Indices: 23248251--23248325 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
23248241 CTAACAAACT
*
23248251 CTAACAAA-TTCAACTTCTTACTCGTACTAACAAG
1 CTAACAAACTT-AACTTCTTACTCCTACTAACAAG
23248285 CTAACAAACTTAACTTCTTACTCCTACTAACAAG
1 CTAACAAACTTAACTTCTTACTCCTACTAACAAG
23248319 CTAACAA
1 CTAACAA
23248326 TCTCCTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 37 0.95
35 2 0.05
ACGTcount: A:0.40, C:0.28, G:0.04, T:0.28
Consensus pattern (34 bp):
CTAACAAACTTAACTTCTTACTCCTACTAACAAG
Found at i:23249706 original size:25 final size:25
Alignment explanation
Indices: 23249673--23249720 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23249663 TATTATGATT
* *
23249673 ATAATTTTGCTTCTTCTTCTACTTG
1 ATAACTTTGCTTCCTCTTCTACTTG
*
23249698 ATAACTTTGCTTCCTCTTTTACT
1 ATAACTTTGCTTCCTCTTCTACT
23249721 CTTGGAAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.17, C:0.23, G:0.06, T:0.54
Consensus pattern (25 bp):
ATAACTTTGCTTCCTCTTCTACTTG
Found at i:23257945 original size:20 final size:20
Alignment explanation
Indices: 23257922--23257964 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
23257912 TAAATATATT
*
23257922 TATTATGTT-TTATTATTATA
1 TATTATATTATTA-TATTATA
23257942 TATTATATTATTATATTATA
1 TATTATATTATTATATTATA
23257962 TAT
1 TAT
23257965 AAAGTAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TATTATATTATTATATTATA
Found at i:23257956 original size:13 final size:13
Alignment explanation
Indices: 23257892--23257962 Score: 55
Period size: 13 Copynumber: 5.8 Consensus size: 13
23257882 GTTTAATAAA
23257892 TATATTATATTAT
1 TATATTATATTAT
* * *
23257905 TA-AATA-ATAAA
1 TATATTATATTAT
23257916 TATATT-TATTAT
1 TATATTATATTAT
23257928 GT-T-TTATTATTA-
1 -TATATTA-TATTAT
23257940 TATATTATATTAT
1 TATATTATATTAT
23257953 TATATTATAT
1 TATATTATAT
23257963 ATAAAGTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
11 8 0.18
12 15 0.34
13 21 0.48
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (13 bp):
TATATTATATTAT
Found at i:23257963 original size:15 final size:15
Alignment explanation
Indices: 23257915--23257964 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
23257905 TAAATAATAA
*
23257915 ATATATTTATTATGTT
1 ATATA-TTATTATATT
23257931 -T-TATTATTATA-T
1 ATATATTATTATATT
23257943 ATTATATTATTATATT
1 A-TATATTATTATATT
23257959 ATATAT
1 ATATAT
23257965 AAAGTAAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
12 1 0.03
13 7 0.24
14 3 0.10
15 16 0.55
16 2 0.07
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (15 bp):
ATATATTATTATATT
Found at i:23258824 original size:36 final size:38
Alignment explanation
Indices: 23258743--23258832 Score: 96
Period size: 37 Copynumber: 2.4 Consensus size: 38
23258733 ATGTGTGGAA
* *
23258743 TTGAAATGAATAT-TGACTTGAAAATGGAAAAGTAAATT
1 TTGAATTGAAT-TGTGACTTGAAAATGAAAAAGTAAATT
* * *
23258781 TTAAATTGAATTGTGA-TTGAAAGTGAAAAAGTGAA-T
1 TTGAATTGAATTGTGACTTGAAAATGAAAAAGTAAATT
*
23258817 TTGAATTGAAATGTGA
1 TTGAATTGAATTGTGA
23258833 AATTGGAGAC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
36 15 0.34
37 17 0.39
38 12 0.27
ACGTcount: A:0.44, C:0.01, G:0.21, T:0.33
Consensus pattern (38 bp):
TTGAATTGAATTGTGACTTGAAAATGAAAAAGTAAATT
Found at i:23266027 original size:42 final size:42
Alignment explanation
Indices: 23265948--23266077 Score: 134
Period size: 48 Copynumber: 2.9 Consensus size: 42
23265938 GTCTTACGTG
* * *
23265948 GAAATCTCATATCGATGCAAATAGCCCAGCTATGGTCTTACAC
1 GAAATCTCACATCGATGC-AATATCCCAGATATGGTCTTACAC
* * *
23265991 GAAGTCTCACATCGATGCTATATCCCAGATATGGTCTTATAC
1 GAAATCTCACATCGATGCAATATCCCAGATATGGTCTTACAC
*
23266033 GAAATCTCAAATCAATATCGATGCCATATCCCAGATATGGTCTTA
1 GAAATCTC--A-C---ATCGATGCAATATCCCAGATATGGTCTTA
23266078 TACGGGATCC
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 27 0.37
43 16 0.22
44 1 0.01
45 1 0.01
48 28 0.38
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.28
Consensus pattern (42 bp):
GAAATCTCACATCGATGCAATATCCCAGATATGGTCTTACAC
Found at i:23266072 original size:48 final size:48
Alignment explanation
Indices: 23266001--23266148 Score: 210
Period size: 48 Copynumber: 3.1 Consensus size: 48
23265991 GAAGTCTCAC
* *
23266001 ATCGATGCTATATCCCAGATATGGTCTTATACGAAATCTCAAATCAAT
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCAAT
* * *
23266049 ATCGATGCCATATCCCAGATATGGTCTTATACGGGATCCCAAATCGAT
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCAAT
**
23266097 GCCGATGCCATATCCCAGATATGGTCTTATAC-AGGATCTCAAATCAAT
1 ATCGATGCCATATCCCAGATATGGTCTTATACGA-GATCTCAAATCAAT
23266145 -TCGA
1 ATCGA
23266149 CAATATATAT
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
47 3 0.03
48 85 0.97
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (48 bp):
ATCGATGCCATATCCCAGATATGGTCTTATACGAGATCTCAAATCAAT
Found at i:23268708 original size:41 final size:42
Alignment explanation
Indices: 23268598--23268712 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 42
23268588 TTATTAATTT
* *
23268598 TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTG
1 TAAA-GTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGAATA
* * * *
23268641 TGAAAGGGGTTTCTATGTGCTAATTCC-CCGTATCAC-TGAATA
1 T-AAAGTGGTTGCTAAGTGCTGATTCCACCGTATC-CTTGAATA
23268683 T-AAGTTGGTTGCTAAGTGCTGATTCCACCG
1 TAAAG-TGGTTGCTAAGTGCTGATTCCACCG
23268713 AGTAACGGTT
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
40 3 0.05
41 17 0.29
42 15 0.26
43 20 0.34
44 3 0.05
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (42 bp):
TAAAGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGAATA
Found at i:23271699 original size:21 final size:21
Alignment explanation
Indices: 23271673--23271714 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
23271663 GAAATTGAAA
23271673 TGTTTTAATTTCACA-TTAATT
1 TGTTTTAATTTC-CATTTAATT
23271694 TGTTTTAATTTCCATTTAATT
1 TGTTTTAATTTCCATTTAATT
23271715 ACAAAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.60
Consensus pattern (21 bp):
TGTTTTAATTTCCATTTAATT
Found at i:23275723 original size:21 final size:21
Alignment explanation
Indices: 23275698--23275761 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
23275688 TAGTTGATTT
23275698 TAATAAGATTATTAATATAAA
1 TAATAAGATTATTAATATAAA
23275719 TAATAAGATTATT-AT-T---
1 TAATAAGATTATTAATATAAA
23275735 TAATAAGATTATTAATATAAA
1 TAATAAGATTATTAATATAAA
23275756 TAATAA
1 TAATAA
23275762 ATAATTTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
16 13 0.34
17 2 0.05
18 1 0.03
19 1 0.03
20 2 0.05
21 19 0.50
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (21 bp):
TAATAAGATTATTAATATAAA
Found at i:23275740 original size:16 final size:16
Alignment explanation
Indices: 23275696--23275748 Score: 61
Period size: 16 Copynumber: 3.0 Consensus size: 16
23275686 TGTAGTTGAT
23275696 TTTAATAAGATTATTAA
1 TTTAATAAGATTATT-A
23275713 TATAAATAATAAGATTATTA
1 T-T---TAATAAGATTATTA
23275733 TTTAATAAGATTATTA
1 TTTAATAAGATTATTA
23275749 ATATAAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
16 14 0.44
17 1 0.03
18 1 0.03
19 1 0.03
20 2 0.06
21 13 0.41
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
TTTAATAAGATTATTA
Found at i:23275792 original size:13 final size:13
Alignment explanation
Indices: 23275765--23275819 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
23275755 ATAATAAATA
* *
23275765 ATTTAAAATAATT
1 ATTTAATATTATT
*
23275778 ATTTAATATTTTT
1 ATTTAATATTATT
**
23275791 ATTTAATAGGATT
1 ATTTAATATTATT
*
23275804 ATTTAATATTGTT
1 ATTTAATATTATT
23275817 ATT
1 ATT
23275820 GTTATTAAAT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (13 bp):
ATTTAATATTATT
Found at i:23275794 original size:26 final size:26
Alignment explanation
Indices: 23275765--23275819 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
23275755 ATAATAAATA
* *
23275765 ATTTAAAATAATTATTTAATATTTTT
1 ATTTAAAAGAATTATTTAATATTGTT
* *
23275791 ATTTAATAGGATTATTTAATATTGTT
1 ATTTAAAAGAATTATTTAATATTGTT
23275817 ATT
1 ATT
23275820 GTTATTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (26 bp):
ATTTAAAAGAATTATTTAATATTGTT
Found at i:23275872 original size:11 final size:11
Alignment explanation
Indices: 23275853--23275885 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
23275843 TTAATATAAA
23275853 TAATAAATAATT
1 TAAT-AATAATT
23275865 TAATAATAATT
1 TAATAATAATT
23275876 TAA-AATAATT
1 TAATAATAATT
23275886 ATTATTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 7 0.33
11 10 0.48
12 4 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
TAATAATAATT
Found at i:23275966 original size:55 final size:55
Alignment explanation
Indices: 23275848--23275965 Score: 132
Period size: 56 Copynumber: 2.1 Consensus size: 55
23275838 GATTATTAAT
*
23275848 ATAAATAATAAATAATTTAATAATAATTTAAAATAATTATTATTAAATATAATTTA
1 ATAAA-AATAAATAATTTAATAATAATTTAAAATAAATATTATTAAATATAATTTA
* * * *
23275904 ATAAAAATATATAATTTAATAA-AATTCTTAATATTAAATATTCTTATATA-AATTTA
1 ATAAAAATAAATAATTTAATAATAA-T-TTAA-AATAAATATTATTAAATATAATTTA
*
23275960 CTAAAA
1 ATAAAA
23275966 TCATAATATA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
54 2 0.04
55 17 0.32
56 20 0.38
57 14 0.26
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (55 bp):
ATAAAAATAAATAATTTAATAATAATTTAAAATAAATATTATTAAATATAATTTA
Found at i:23276008 original size:13 final size:12
Alignment explanation
Indices: 23275984--23276024 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
23275974 TATAATACTA
23275984 TAAAATATAATT
1 TAAAATATAATT
23275996 TAAAATAATAATT
1 TAAAAT-ATAATT
*
23276009 ATTAAATATAATT
1 -TAAAATATAATT
23276022 TAA
1 TAA
23276025 TAAAATTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:23276030 original size:102 final size:102
Alignment explanation
Indices: 23275912--23276145 Score: 409
Period size: 102 Copynumber: 2.3 Consensus size: 102
23275902 TAATAAAAAT
*
23275912 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTAATAAAATCATAATATAT
*
23275977 AATACTATAAAATATAATTTAAAATAATAATTATTAA
66 AATACTATAAAATATAATTTAAAATAATAATGATTAA
23276014 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTAATAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTAATAAAATCATAATATAT
23276079 AATACTATAAAATATAATTTAAAATAATAATGATTAA
66 AATACTATAAAATATAATTTAAAATAATAATGATTAA
*
23276116 ATAT--TTAAAATAAATATTCTTAATATTAAA
1 ATATAATT-TAATAAA-ATTCTTAATATTAAA
23276146 CATTTGATTC
Statistics
Matches: 127, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
100 2 0.02
101 6 0.05
102 119 0.94
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (102 bp):
ATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTAATAAAATCATAATATAT
AATACTATAAAATATAATTTAAAATAATAATGATTAA
Found at i:23276098 original size:38 final size:39
Alignment explanation
Indices: 23276012--23276100 Score: 103
Period size: 38 Copynumber: 2.3 Consensus size: 39
23276002 AATAATTATT
* * * *
23276012 AAATATAATTTAATAAAATTCTTAATATTAAATATTCTT
1 AAATATAATTTAATAAAATTCATAATATTAAATACTATA
*
23276051 ATATA-AATTTAATAAAA-TCATAATA-TATAATACTATA
1 AAATATAATTTAATAAAATTCATAATATTA-AATACTATA
23276088 AAATATAATTTAA
1 AAATATAATTTAA
23276101 AATAATAATG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
36 2 0.05
37 17 0.40
38 19 0.45
39 4 0.10
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (39 bp):
AAATATAATTTAATAAAATTCATAATATTAAATACTATA
Found at i:23276475 original size:12 final size:12
Alignment explanation
Indices: 23276458--23276483 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23276448 TGTATACAAG
23276458 GTTTATCATATT
1 GTTTATCATATT
23276470 GTTTATCATATT
1 GTTTATCATATT
23276482 GT
1 GT
23276484 ACAAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.12, T:0.58
Consensus pattern (12 bp):
GTTTATCATATT
Found at i:23276510 original size:67 final size:67
Alignment explanation
Indices: 23276432--23276577 Score: 166
Period size: 67 Copynumber: 2.2 Consensus size: 67
23276422 AACTAAATAC
* * *
23276432 AATATTAATTACAGAATGTATACAAGGTTTATCATATTGTTTATCATATTGTACAAATTTTCTAT
1 AATA-TAATTACACAATATATACAAGATTTATCATATTGTTTATCATATTGTACAAATTTTCTAT
23276497 AAT
65 AAT
* * ** * * ** * *
23276500 ATTATAATTACCCTTTATTTAGATTATTTATCGTATTGTTTATCATATTGTTCAAATTTTCTATA
1 AATATAATTACACAATATATACAAGATTTATCATATTGTTTATCATATTGTACAAATTTTCTATA
23276565 AT
66 AT
23276567 AATATAATTAC
1 AATATAATTAC
23276578 CCTTTATTTA
Statistics
Matches: 64, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
67 61 0.95
68 3 0.05
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.48
Consensus pattern (67 bp):
AATATAATTACACAATATATACAAGATTTATCATATTGTTTATCATATTGTACAAATTTTCTATA
AT
Found at i:23276578 original size:67 final size:67
Alignment explanation
Indices: 23276459--23276602 Score: 252
Period size: 67 Copynumber: 2.1 Consensus size: 67
23276449 GTATACAAGG
*
23276459 TTTATCATATTGTTTATCATATTGTACAAATTTTCTATAATATTATAATTACCCTTTATTTAGAT
1 TTTATCATATTGTTTATCATATTGTACAAATTTTCTATAATAATATAATTACCCTTTATTTAGAT
23276524 TA
66 TA
* *
23276526 TTTATCGTATTGTTTATCATATTGTTCAAATTTTCTATAATAATATAATTACCCTTTATTTAGAT
1 TTTATCATATTGTTTATCATATTGTACAAATTTTCTATAATAATATAATTACCCTTTATTTAGAT
*
23276591 TG
66 TA
23276593 TTTATCATAT
1 TTTATCATAT
23276603 AGTTAAAATT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 72 1.00
ACGTcount: A:0.31, C:0.10, G:0.06, T:0.53
Consensus pattern (67 bp):
TTTATCATATTGTTTATCATATTGTACAAATTTTCTATAATAATATAATTACCCTTTATTTAGAT
TA
Found at i:23278385 original size:83 final size:82
Alignment explanation
Indices: 23278288--23278490 Score: 308
Period size: 77 Copynumber: 2.5 Consensus size: 82
23278278 ACGGGAGTGG
23278288 CGATTTCGGGAGGGAGAGAGAGGGAGAGGGTGGAGGTGATTTTGCAGAAACAGCTTCTGTTGATG
1 CGATTTCGGGAGGGAG-GAGAGGGAGAGGGTGGAGGTGATTTTGCAGAAACAGCTTCTGTTGATG
23278353 TTGGGAGGTCGATTTCGA
65 TTGGGAGGTCGATTTCGA
23278371 CGATTTC----GGGAGG-GAGGGAGAGGGTGGAGGTGATTTTGCAGAAACAGCTTCTGTTGATGT
1 CGATTTCGGGAGGGAGGAGAGGGAGAGGGTGGAGGTGATTTTGCAGAAACAGCTTCTGTTGATGT
*
23278431 TGGGAGGTCGATTTCGG
66 TGGGAGGTCGATTTCGA
* * *
23278448 TGATTTCGGGAGGGAGGGAGAGAGAGAGGCTGGAGGTCGATTT
1 CGATTTCGGGAGGGA-GGAGAGGGAGAGGGTGGAGGT-GATTT
23278491 CGACGAGGGT
Statistics
Matches: 109, Mismatches: 4, Indels: 13
0.87 0.03 0.10
Matches are distributed among these distances:
77 69 0.63
78 1 0.01
79 5 0.05
81 4 0.04
82 2 0.02
83 23 0.21
84 5 0.05
ACGTcount: A:0.22, C:0.09, G:0.44, T:0.25
Consensus pattern (82 bp):
CGATTTCGGGAGGGAGGAGAGGGAGAGGGTGGAGGTGATTTTGCAGAAACAGCTTCTGTTGATGT
TGGGAGGTCGATTTCGA
Found at i:23288306 original size:125 final size:125
Alignment explanation
Indices: 23288141--23288659 Score: 684
Period size: 125 Copynumber: 4.2 Consensus size: 125
23288131 ACCCATATGT
** *
23288141 ACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAGGTTCGACTTGACGTTTCTGAGCCAATAGTT
1 ACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTT
* * * *
23288206 TAAAAAATGCTTCAAGCAGGATGCTTTGTGAGAAGAATTTGTGAAATCGCGTCCTCGTGG
66 TAAAAAACGCTTCAAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGG
* * * * * *
23288266 ACGCTCTTTTACTACAGTTGGTCCTGGAGAAATAATTTCGAGTTGACGTTTTTGAGCAAATAGTT
1 ACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTT
* *
23288331 TAAAAAACGCTTCAAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGG
66 TAAAAAACGCTTCAAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGG
* * * * * *
23288391 ATGCGCTTTTGCTACAATAGGTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTA
1 ACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTT
* * * * * *
23288456 TAAAACAACGCTCCAAGAAGTATGC-TAATTGAGAAGAATTTGTGAAATCGTGCCCTCGTGG
66 TAAAA-AACGCTTCAAGCAGGATGCTTTA-TGAGAAGAATTTGTGAAATCGCGCCCACGTGG
* *
23288517 ACGTGCTTTTGCTATAGTTA-GTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGT
1 ACGCGCTTTTGCTACAG-TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGT
* * * * *
23288581 AT-AAAATCGCTTCTAGCAGGATGCTTTATGAGAAGAATTTGTGAAATTGCACCCACGTGG
65 TTAAAAAACGCTTCAAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGG
23288641 ACGCGCTTTTGCTACAGTA
1 ACGCGCTTTTGCTACAGTA
23288660 ACATGTTTGG
Statistics
Matches: 338, Mismatches: 52, Indels: 10
0.85 0.13 0.03
Matches are distributed among these distances:
123 2 0.01
124 57 0.17
125 177 0.52
126 100 0.30
127 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (125 bp):
ACGCGCTTTTGCTACAGTAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTT
TAAAAAACGCTTCAAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGG
Found at i:23291845 original size:43 final size:42
Alignment explanation
Indices: 23291778--23292661 Score: 746
Period size: 43 Copynumber: 20.5 Consensus size: 42
23291768 TCAAATTATA
* * *
23291778 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGATTTAAGGTT
1 TTTAAGTTAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * *
23291821 TTAAAGCTAAGGATTTAGGGTTTTAAAGTCAAGGGTTTAGGGTT
1 TTTAAGTTAAGG-TTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
23291865 TTTAGGTTAAGGGTTAGGGTTTTTATGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* **
23291908 TTTAATTTAAGGGGTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* * * * *
23291951 TTAAAGTTAAGGGTCTAGGGTTTTAAAATTAAGGCTTAAGGG-T
1 TTTAAGTTAA-GGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * * *
23291994 TTTAGGTTAAGGGTTATGGTTTTAGGTTAAGGGATTAGGGTT
1 TTTAAGTTAAGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
* * * *
23292036 TTTAATTTAAGGGTTAGGATTTTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGTTTAGG-GTTTTAAGTTAAGGGTTTAGGGTT
* *
23292079 TTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAA-AGTTTATGGTT
1 TTTAAGTTAA-GGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * * * *
23292122 TTTAGGTTAGGGGTTAAGGTTTTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTA-AGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
* *
23292165 TTTAATTTAAAGG-TTAGGGTTTTTAAGTTAAGGGTTTAGAGTT
1 TTTAAGTT-AAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
* *
23292208 TTTAAGTCAAGGGTCTAGGGTTTTAAAGTTAA-GGTTTAGGGTT
1 TTTAAGTTAA-GGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * ** *
23292251 TTTAGGTTAAGGGTTAGTGTTTTTTGGTTTAGGGTTTAGGGTTT
1 TTTAAGTTAAGGTTTAG-GGTTTTAAGTTAAGGGTTTAGGG-TT
* *
23292295 TTTAATTTAAGG-TTAGGGTTTTTAAGTTAATGGTTTAGGGTT
1 TTTAAGTTAAGGTTTAGGG-TTTTAAGTTAAGGGTTTAGGGTT
*
23292337 TTTAAGTTAAGGGTCTAGGGTTTTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAA-GGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * *
23292380 TTAAAGTTAAGGGTTAGGGTTTTCAGGTTAAGAG-TTAGGGTT
1 TTTAAGTTAAGGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * * * *
23292422 TTTAATTTAAGAGTTTAGTGTTTTTAATTTAAGAGTTTAGTGCTT
1 TTTAAGTTAAG-GTTTAG-GGTTTTAAGTTAAGGGTTTAG-GGTT
* * * * *
23292467 TTTAGGTTAAGGGTTTAGGGTTTTAAAGTTAAGAG-TGAAGATT
1 TTTAAGTTAA-GGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* * *
23292510 TTTAGGTTAAGGGGTTAGGGTTTTAAAGTTAATGG-TTAGGGTT
1 TTTAAGTTAA-GGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* *
23292553 TTTAGGTTAAGGGTTTAGGGTTTTAAAGTTAAAGG-TTAGGGTT
1 TTTAAGTTAA-GGTTTAGGGTTTT-AAGTTAAGGGTTTAGGGTT
* **
23292596 TTTAGGTTAAGGGGATAGAGGTTTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAA-GGTTTAG-GGTTTTAAGTTAAGGGTTTAGGGTT
* *
23292639 TTTAGGTTAATGGTTTAAGGTTT
1 TTTAAGTTAA-GGTTTAGGGTTT
23292662 GTCAATTAAA
Statistics
Matches: 694, Mismatches: 117, Indels: 61
0.80 0.13 0.07
Matches are distributed among these distances:
41 12 0.02
42 100 0.14
43 424 0.61
44 131 0.19
45 26 0.04
46 1 0.00
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (42 bp):
TTTAAGTTAAGGTTTAGGGTTTTAAGTTAAGGGTTTAGGGTT
Found at i:23292195 original size:129 final size:129
Alignment explanation
Indices: 23291778--23292661 Score: 1075
Period size: 129 Copynumber: 6.8 Consensus size: 129
23291768 TCAAATTATA
* * * * * * *
23291778 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGATTTAAGGTTTTAAAGCTAAGGATTTAGGGTT
1 TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGGTT
* * * *
23291843 TTAAAGTCAAGGGTTTAGGGTTTTTAGGTTAAGGGTTAGGGTTTTTATGTTAAGGGTTTAGAGTT
66 TTAAAGTTAA-GGTTTAGGGTTTTTAGGTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTAGGGTT
* *
23291908 TTTAATTTAAGGGGTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGGGTCTAGGGTT
1 TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGGTT
* * * *
23291973 TTAAAATTAAGGCTTAAGGG-TTTTAGGTTAAGGGTTATGG-TTTTAGGTTAAGGGATTAGGGTT
66 TTAAAGTTAAGG-TTTAGGGTTTTTAGGTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTAGGGTT
* * *
23292036 TTTAATTTAAGGGTTAGGATTTTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGGTT
* * * *
23292101 TTAAAGTTAAAGTTTATGGTTTTTAGGTTAGGGGTTAAGGTTTTTAGGTTAAGGGTTTATGGTT
66 TTAAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTAGGGTT
* * *
23292165 TTTAATTTAAAGGTTAGGGTTTTTAAGTTAAGGGTTTAGAGTTTTTAAGTCAAGGGTCTAGGGTT
1 TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGGTT
* *
23292230 TTAAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTT-AGTGTTTTTTGGTTTAGGGTTTAGGGTT
66 TTAAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTAAG-GTTTTTAGGTTAAGGGTTTAGGG-T
23292294 T
129 T
*
23292295 TTTAATTTAA-GGTTAGGGTTTTTAAGTTAATGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGGTT
1 TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGGTT
* * * * * *
23292359 TTAAAGTTAAGGGTTAGGGTTTTAAAGTTAAGGGTTAGGGTTTTCAGGTTAAGAG-TTAGGGTT
66 TTAAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTAGGGTT
* * * * * * *
23292422 TTTAATTTAAGAGTTTAGTGTTTTTAATTTAAGAGTTTAGTGCTTTTTAGGTTAAGGGTTTAGGG
1 TTTAATTTAAG-GGTTAGGGTTTTTAAGTTAAGGGTTTAG-GGTTTTTAAGTTAAGGGTCTAGGG
* * * * * * *
23292487 TTTTAAAGTTAAGAG-TGAAGATTTTTAGGTTAAGGGGTTAGGGTTTTAAAGTTAATGG-TTAGG
64 TTTTAAAGTTAAG-GTTTAGGGTTTTTAGGTTAA-GGGTTAAGGTTTTTAGGTTAAGGGTTTAGG
23292550 GTT
127 GTT
** * * * **
23292553 TTTAGGTTAAGGGTTTAGGGTTTTAAAGTTAAAGG-TTAGGGTTTTTAGGTTAAGGGGATAGAGG
1 TTTAATTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTCTAG-GG
* *
23292617 TTTT-AAGTTAAGGGTTAGGGTTTTTAGGTTAATGGTTTAAGGTTT
64 TTTTAAAGTTAAGGTTTAGGGTTTTTAGGTTAA-GGGTTAAGGTTT
23292662 GTCAATTAAA
Statistics
Matches: 656, Mismatches: 84, Indels: 29
0.85 0.11 0.04
Matches are distributed among these distances:
127 17 0.03
128 117 0.18
129 325 0.50
130 143 0.22
131 54 0.08
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (129 bp):
TTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTCTAGGGTT
TTAAAGTTAAGGTTTAGGGTTTTTAGGTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTAGGGTT
Found at i:23292598 original size:22 final size:21
Alignment explanation
Indices: 23291778--23292653 Score: 860
Period size: 22 Copynumber: 40.7 Consensus size: 21
23291768 TCAAATTATA
23291778 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
23291799 TTTAAGTTAAGGATTTAAGGTT
1 TTTAAGTTAAGG-GTTAGGGTT
* * *
23291821 TTAAAGCTAAGGATTTAGGGTT
1 TTTAAGTTAAGG-GTTAGGGTT
* *
23291843 TTAAAGTCAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
*
23291865 TTTAGGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
23291886 TTTATGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* *
23291908 TTTAATTTAAGGGGTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
23291929 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
*
23291951 TTAAAGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGT-TAGGGTT
* * *
23291973 TTAAAATTAAGGCTTAAGGG-T
1 TTTAAGTTAAGGGTT-AGGGTT
* *
23291994 TTTAGGTTAAGGGTTATGG-T
1 TTTAAGTTAAGGGTTAGGGTT
*
23292014 TTTAGGTTAAGGGATTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* *
23292036 TTTAATTTAAGGGTTAGGATT
1 TTTAAGTTAAGGGTTAGGGTT
*
23292057 TTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
23292079 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* * * *
23292101 TTAAAGTTAAAGTTTATGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * *
23292122 TTTAGGTTAGGGGTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
23292143 TTTAGGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* *
23292165 TTTAATTTAAAGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
23292186 TTTAAGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGG-TTAGGGTT
*
23292208 TTTAAGTCAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGT-TAGGGTT
* *
23292230 TTAAAGTTAAGGTTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
23292251 TTTAGGTTAAGGGTTAGTGTT
1 TTTAAGTTAAGGGTTAGGGTT
** *
23292272 TTTTGGTTTAGGGTTTAGGGTTT
1 TTTAAGTTAAGGG-TTAGGG-TT
*
23292295 TTTAATTTAA-GGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
23292315 TTTAAGTTAATGGTTTAGGGTT
1 TTTAAGTTAA-GGGTTAGGGTT
23292337 TTTAAGTTAAGGGTCTAGGGTT
1 TTTAAGTTAAGGGT-TAGGGTT
*
23292359 TTAAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
23292380 TTAAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * *
23292401 TTCAGGTTAAGAGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* * *
23292422 TTTAATTTAAGAGTTTAGTGTT
1 TTTAAGTTAAG-GGTTAGGGTT
* * *
23292444 TTTAATTTAAGAGTTTAGTGCTT
1 TTTAAGTTAAG-GGTTAG-GGTT
*
23292467 TTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* * * * *
23292489 TTAAAGTTAAGAGTGAAGATT
1 TTTAAGTTAAGGGTTAGGGTT
*
23292510 TTTAGGTTAAGGGGTTAGGGTT
1 TTTAAGTTAA-GGGTTAGGGTT
* *
23292532 TTAAAGTTAATGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
*
23292553 TTTAGGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTT
* *
23292575 TTAAAGTTAAAGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
23292596 TTTAGGTTAAGGGGATAGAGG-T
1 TTTAAGTTAA-GGGTTAG-GGTT
23292618 TTTAAGTTAAGGGTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTT
* *
23292639 TTTAGGTTAATGGTT
1 TTTAAGTTAAGGGTT
23292654 TAAGGTTTGT
Statistics
Matches: 712, Mismatches: 118, Indels: 50
0.81 0.13 0.06
Matches are distributed among these distances:
20 30 0.04
21 308 0.43
22 349 0.49
23 25 0.04
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTAGGGTT
Found at i:23293877 original size:7 final size:7
Alignment explanation
Indices: 23293867--23293906 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
23293857 TTATATACAT
23293867 AATACTA
1 AATACTA
23293874 AATACTA
1 AATACTA
23293881 AATACTA
1 AATACTA
23293888 AATACTA
1 AATACTA
23293895 AATACTA
1 AATACTA
23293902 AATAC
1 AATAC
23293907 CAATCGACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:23294112 original size:20 final size:20
Alignment explanation
Indices: 23294075--23294112 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23294065 TTTATTTTTA
*
23294075 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
23294095 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
23294113 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:23295170 original size:12 final size:12
Alignment explanation
Indices: 23295128--23295171 Score: 65
Period size: 11 Copynumber: 3.8 Consensus size: 12
23295118 ATTTTAATGT
23295128 AATTTGAGAGGA
1 AATTTGAGAGGA
*
23295140 AATTT-AGAAGA
1 AATTTGAGAGGA
23295151 AA-TTGAGAGGA
1 AATTTGAGAGGA
23295162 AATTTGAGAG
1 AATTTGAGAG
23295172 AGGATTAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 2 0.07
11 14 0.50
12 12 0.43
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.25
Consensus pattern (12 bp):
AATTTGAGAGGA
Found at i:23303775 original size:26 final size:26
Alignment explanation
Indices: 23303739--23303789 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
23303729 TCTTCTAATT
* * *
23303739 CTAACATCAAATTAAAAATATAAATC
1 CTAAAATCAAACTAAAAATAAAAATC
*
23303765 CTAAAATCAAACTAACAATAAAAAT
1 CTAAAATCAAACTAAAAATAAAAAT
23303790 AATAAAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.24
Consensus pattern (26 bp):
CTAAAATCAAACTAAAAATAAAAATC
Found at i:23304896 original size:5 final size:5
Alignment explanation
Indices: 23304886--23304923 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
23304876 TTTTCACACT
* *
23304886 AAAAC AAAAC AAAAC AAAAC AAAAT AAAA- TAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
23304924 GTTAGAACAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
4 3 0.10
5 26 0.90
ACGTcount: A:0.82, C:0.13, G:0.00, T:0.05
Consensus pattern (5 bp):
AAAAC
Found at i:23306650 original size:15 final size:17
Alignment explanation
Indices: 23306611--23306643 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23306601 CTAACCCGAC
23306611 CCTCTTAAAACCCTAAA
1 CCTCTTAAAACCCTAAA
*
23306628 CCTCTTAAATCCCTAA
1 CCTCTTAAAACCCTAA
23306644 CTCTTAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.27
Consensus pattern (17 bp):
CCTCTTAAAACCCTAAA
Found at i:23307690 original size:114 final size:113
Alignment explanation
Indices: 23307491--23307731 Score: 324
Period size: 114 Copynumber: 2.1 Consensus size: 113
23307481 CGCTTTAACA
* * * * **
23307491 AAAACGCCGCTAAAACCTATATTATTCGCGGCGCTAATCTAAACGCCACTAAAGTCATTGAAGTG
1 AAAACGCCGCTAATACCTATATTATTAGCGGCGCTAATCAAAACGACACTAAAGTCACCGAAGTG
23307556 TCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGTGGCATTTTTATA-
66 TCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGTGGCATTTTTATAC
* * *
23307603 GAAACGCCGCTAATA-CTCATATTATTAGCGGCGCTATTCAAAAAACGACACTAATGTCACCGAA
1 AAAACGCCGCTAATACCT-ATATTATTAGCGGCGCTAATC--AAAACGACACTAAAGTCACCGAA
* * *
23307667 GTGTCTCCAGACGACGTCGTCTGGGTTTTAGTTTTTGTGGCGTTTTTATAC
63 GTGTCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGTGGCATTTTTATAC
*
23307718 AAAACGCCACTAAT
1 AAAACGCCGCTAAT
23307732 GTCACCGAAG
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
111 2 0.02
112 32 0.29
114 65 0.59
115 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (113 bp):
AAAACGCCGCTAATACCTATATTATTAGCGGCGCTAATCAAAACGACACTAAAGTCACCGAAGTG
TCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGTGGCATTTTTATAC
Found at i:23307784 original size:74 final size:74
Alignment explanation
Indices: 23307644--23307787 Score: 225
Period size: 74 Copynumber: 1.9 Consensus size: 74
23307634 CGCTATTCAA
* * ***
23307644 AAAACGACACTAATGTCACCGAAGTGTCTCCAGACGACGTCGTCTGGGTTTTAGTTTTTGTGGCG
1 AAAACGACACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGTTTTAGTTTTTCCAGCG
23307709 TTTTTATAC
66 TTTTTATAC
* *
23307718 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTTTGGGTTTTAGTTTTTCCAGCG
1 AAAACGACACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGTTTTAGTTTTTCCAGCG
23307783 TTTTT
66 TTTTT
23307788 GTGGAAACGC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 63 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (74 bp):
AAAACGACACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGTTTTAGTTTTTCCAGCG
TTTTTATAC
Found at i:23307858 original size:188 final size:187
Alignment explanation
Indices: 23307531--23307918 Score: 546
Period size: 188 Copynumber: 2.1 Consensus size: 187
23307521 GCGCTAATCT
* ** * ***
23307531 AAACGCCACTAAAGTCATTGAAGTGTCTCCAAACGACGTCGTCTGGGGTTTAGTTTTTGTGGCAT
1 AAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGGTTTAGTTTTTCCAGCAT
*
23307596 TTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGACACTAATGTC
66 TTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGACACTAAAGTC
* * *
23307661 ACCGAAGTGTCTCCAGACGACGTCGTCT-GGGTTTTAGTTTTTGTGGCGTTTTTATACA
131 ACCGAAGTGTCTCCAAACGACGTCGTCTAGGG-TTTAGTTTTTGCGGCATTTTTATA-A
* * *
23307719 AAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTTTGGGTTTTAGTTTTTCCAGCGT
1 AAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGGTTTAGTTTTTCCAGCAT
* * * *
23307784 TTTTGTGGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATT-AGAAAAATGCCACTAAAGT
66 TTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCA-AAAAACGACACTAAAGT
* *
23307848 CACTGAAGTGTCTCCAAACGACGTCGTCTAGGGTTTAGTTTTTGCGGCATTTTTATAT
130 CACCGAAGTGTCTCCAAACGACGTCGTCTAGGGTTTAGTTTTTGCGGCATTTTTATAA
*
23307906 AAACGCCGCTAAT
1 AAACGCCACTAAT
23307919 ACTCATATTA
Statistics
Matches: 177, Mismatches: 21, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
187 13 0.07
188 161 0.91
189 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (187 bp):
AAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTCTGGGGTTTAGTTTTTCCAGCAT
TTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCAAAAAACGACACTAAAGTC
ACCGAAGTGTCTCCAAACGACGTCGTCTAGGGTTTAGTTTTTGCGGCATTTTTATAA
Done.