Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 84 of 189
Found at i:23307923 original size:114 final size:114
Alignment explanation
Indices: 23307718--23308150 Score: 674
Period size: 114 Copynumber: 3.8 Consensus size: 114
23307708 GTTTTTATAC
* * * *
23307718 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGAAGTCGTTTGGGTTTTAGTTTTTCCAGCG
1 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCAGCA
* *
23307783 TTTTTGTGGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTAGA
66 TTTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTAGA
* * * *
23307832 AAAATGCCACTAAAGTCACTGAAGTGTCTCCAAACGACGTCGTCTAGGG-TTTAGTTTTTGCGGC
1 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCT-GGGTTTTAGTTTTTGCAGC
*
23307896 ATTTTTATATAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCA-A
65 ATTTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATT-AGA
*
23307946 AAAATGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCAGCA
1 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCAGCA
* *
23308011 TTTTTACAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTCGA
66 TTTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTAGA
* * *
23308060 AAAACGCCACTAATGTCACCGAAGTTTCTCCAAACGACGTCGTCTGGG-TTTAGTTTTTGCGGCG
1 AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCAGCA
23308124 TTTTTATAGAAACGCCGCTAATACTCA
66 TTTTTATAGAAACGCCGCTAATACTCA
23308151 ATCGGTTGCG
Statistics
Matches: 293, Mismatches: 22, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
113 43 0.15
114 246 0.84
115 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (114 bp):
AAAACGCCACTAATGTCACCGAAGTGTCTCCAAACGACGTCGTCTGGGTTTTAGTTTTTGCAGCA
TTTTTATAGAAACGCCGCTAATACTCATATTATTAGCGGCGCTATTAGA
Found at i:23308611 original size:43 final size:43
Alignment explanation
Indices: 23308530--23308662 Score: 187
Period size: 43 Copynumber: 3.1 Consensus size: 43
23308520 TCGTCGCTAA
* *
23308530 CTTTAGCGGCGCTTTTCCC-CCAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTCCCTCAAACGCCGCTAAAAACCAAGAC
* *
23308572 CTTTAGCAGCACTTTTCCCTCAAACGCCGCTAAAAACCAAGAC
1 CTTTAGCGGCGCTTTTCCCTCAAACGCCGCTAAAAACCAAGAC
* * * *
23308615 CTTTAGCGGCGCTTTTTCCTGAAGCGCCGCTAAAAAACAAGAC
1 CTTTAGCGGCGCTTTTCCCTCAAACGCCGCTAAAAACCAAGAC
23308658 CTTTA
1 CTTTA
23308663 ATGACGCTTT
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 17 0.21
43 63 0.79
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.23
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCTCAAACGCCGCTAAAAACCAAGAC
Found at i:23308691 original size:43 final size:43
Alignment explanation
Indices: 23308551--23308691 Score: 117
Period size: 43 Copynumber: 3.3 Consensus size: 43
23308541 CTTTTCCCCC
* * * * *
23308551 AACGCCGCTAAAGACCAAGACCTTTAGC-AGCACTTT-TCCCTCA
1 AACGCCGCTAAAAAACAAGACCTTTAACGA-CGCTTTCT-CCTAA
* * * * *
23308594 AACGCCGCTAAAAACCAAGACCTTTAGCGGCGCTTTTTCCTGA
1 AACGCCGCTAAAAAACAAGACCTTTAACGACGCTTTCTCCTAA
* *
23308637 AGCGCCGCTAAAAAACAAGACCTTTAATGACGCTTTCT-CTAAA
1 AACGCCGCTAAAAAACAAGACCTTTAACGACGCTTTCTCCT-AA
*
23308680 AACGCCACTAAA
1 AACGCCGCTAAA
23308692 GGTCACGAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
42 2 0.02
43 79 0.96
44 1 0.01
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.21
Consensus pattern (43 bp):
AACGCCGCTAAAAAACAAGACCTTTAACGACGCTTTCTCCTAA
Found at i:23309615 original size:23 final size:23
Alignment explanation
Indices: 23309581--23309860 Score: 145
Period size: 23 Copynumber: 12.3 Consensus size: 23
23309571 AATGGAAAAT
*
23309581 AGCACTTTAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* **
23309604 AGCGA-TAAAACA-TCTCAATTTGT
1 AGC-ACTTAAACACT-TCAATTTAC
*
23309627 AGCAAC-TAAACACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
23309650 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
* *
23309673 AGCACTTAAACA-TATCAATTAAT
1 AGCACTTAAACACT-TCAATTTAC
* * * *
23309696 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
23309718 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
23309741 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
23309764 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
23309787 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
23309809 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
23309832 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
23309855 AGCACT
1 AGCACT
23309861 ATCAAATCTC
Statistics
Matches: 194, Mismatches: 42, Indels: 42
0.70 0.15 0.15
Matches are distributed among these distances:
22 36 0.19
23 154 0.79
24 4 0.02
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (23 bp):
AGCACTTAAACACTTCAATTTAC
Found at i:23309737 original size:45 final size:45
Alignment explanation
Indices: 23309680--23309828 Score: 156
Period size: 45 Copynumber: 3.3 Consensus size: 45
23309670 TGCAGCACTT
*
23309680 AAACATATCAATTAATAACATTTATACACCTCAATTACAGCGATA
1 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
* ** * ** * * * * *
23309725 AAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGCAGC-ACTT
1 AAACATATCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TA
23309771 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
1 AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
*
23309816 AAACATCTCAATT
1 AAACATATCAATT
23309829 TCCAGCAACT
Statistics
Matches: 77, Mismatches: 24, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
45 44 0.57
46 33 0.43
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.29
Consensus pattern (45 bp):
AAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATA
Found at i:23309756 original size:91 final size:91
Alignment explanation
Indices: 23309641--23309860 Score: 397
Period size: 91 Copynumber: 2.4 Consensus size: 91
23309631 ACTAAACACT
* * *
23309641 TCAATTTGCAGC-ACTTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAATAACATTTAT
1 TCAATTTCCAGCAAC-TAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTAT
23309705 ACACCTCAATTACAGCGATAAAACATC
65 ACACCTCAATTACAGCGATAAAACATC
23309732 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
1 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
23309797 CACCTCAATTACAGCGATAAAACATC
66 CACCTCAATTACAGCGATAAAACATC
23309823 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACT
1 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACT
23309861 ATCAAATCTC
Statistics
Matches: 125, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
91 123 0.98
92 2 0.02
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.30
Consensus pattern (91 bp):
TCAATTTCCAGCAACTAAATACTTCAATTTGCAGCACTTAAACATATCAATTAACAACATTTATA
CACCTCAATTACAGCGATAAAACATC
Found at i:23309805 original size:114 final size:114
Alignment explanation
Indices: 23309586--23309807 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
23309576 AAAATAGCAC
* **
23309586 TTTAACACTTCAATTTACAGCGATAAAACATCTCAATTTGTAGCAACTAAACACTTCAATTTGCA
1 TTTAACACCTCAATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCA
** * *
23309651 GCACTTAAACACTTCAATTTGCAGCACTTAAACATATCAATTAATAACA
66 GCACTTAAACACTTCAATTAACAACACTTAAACACATCAATTAATAACA
*
23309700 TTTATACACCTCAA-TTACAGCGATAAAACATCTCAATTTCCAGCAACTAAATACTTCAATTTGC
1 TTTA-ACACCTCAATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGC
* * *
23309764 AGCACTTAAACA-TATCAATTAACAACATTTATACACCTCAATTA
65 AGCACTTAAACACT-TCAATTAACAACACTTAAACACATCAATTA
23309808 CAGCGATAAA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
113 1 0.01
114 86 0.91
115 8 0.08
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.31
Consensus pattern (114 bp):
TTTAACACCTCAATTTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCA
GCACTTAAACACTTCAATTAACAACACTTAAACACATCAATTAATAACA
Found at i:23310279 original size:41 final size:39
Alignment explanation
Indices: 23310196--23310279 Score: 114
Period size: 39 Copynumber: 2.1 Consensus size: 39
23310186 GCACAATACA
* **
23310196 ATATAAAAAGCATATATAAATATATGAATGTAGAGGCAT
1 ATATAAAAAGCATATATAAATATATGAATGTACAGAAAT
*
23310235 ATATAAAAAGCATATATAAATATATGTATGTCACAGAAACT
1 ATATAAAAAGCATATATAAATATATGAATGT-ACAGAAA-T
23310276 ATAT
1 ATAT
23310280 TCATTTATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 30 0.77
40 4 0.10
41 5 0.13
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (39 bp):
ATATAAAAAGCATATATAAATATATGAATGTACAGAAAT
Found at i:23312662 original size:147 final size:147
Alignment explanation
Indices: 23312243--23313228 Score: 1490
Period size: 147 Copynumber: 6.8 Consensus size: 147
23312233 TATATATATA
* * * * * *
23312243 AAAACCCCGCAAATTTTTTTTATTTTGAACAAAATGATGCCGTTTTGTTATTCTAAATTTTTTTT
1 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTT
* * *
23312308 ATTTTTTT-ATAAATTGATTTATTCTTTGCGGCATTTTTATAGAAAACACCGCTATTGCTTACCT
66 ATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTCTAGAAAACGCCGCTATTGCTTACCT
* *
23312372 TTAGCGGTGCTTCTTAA
131 TTAGCGGCGCTTCTTAT
* * *
23312389 AAAACGCCGTAAAA-TTTTTCATTTTAAACGAAACGACGCCGTTTTGCTATTCTAAATTTTTTTT
1 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTT
*
23312453 A-------AA-AAATTGATTTATTCTTTGCGGCGTTTTTCTGGAAAACGCCGCTATTGCTTACCT
66 ATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTCTAGAAAACGCCGCTATTGCTTACCT
23312510 TTAGCGGCGCTTCTTAT
131 TTAGCGGCGCTTCTTAT
** *
23312527 AAAACGTTGCAAAATTTTTTCATTTTGAACAAAACGACGTCGTTTTGCTATTCTAAATTTTTTTT
1 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTT
* * *
23312592 ATTTTTTTTATAAATTGATTTATTCTTTGCGGCGTTTTTCTGGAAAACGCCGCAATTGCTTACCT
66 ATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTCTAGAAAACGCCGCTATTGCTTACCT
23312657 TTAGCGGCGCTTCTTAT
131 TTAGCGGCGCTTCTTAT
* **
23312674 AAAACGCCGCAAATTTTTTTCATTTTGAACAAAACCTCGCCGTTTTGCTATTCTAAATTTTTTTT
1 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTT
23312739 A-TTTTTTAATAAATTGATTTATTCTTTGCGGCG-TTTTCT----AACGCCGCTATTGCTTACCT
66 ATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTCTAGAAAACGCCGCTATTGCTTACCT
23312798 TTAGCGGCGCTTCTTAT
131 TTAGCGGCGCTTCTTAT
*
23312815 AAAACGCCGCAAAATTTTTTTATTTTGAACAAAACGACGCCGTTTTGCTATTCT-AATTTTTTTT
1 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTT
* * *
23312879 ATTTTTTTAATAAATTTATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTATCT
66 ATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTCTAGAAAACGCCGCTATTGCTTACCT
*
23312944 TTAGCGACGCTTCTTAT
131 TTAGCGGCGCTTCTTAT
*
23312961 AAAACACCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTT
1 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCT-AAATTTTTTT
* *
23313026 TATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTACT
65 TATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTCTAGAAAACGCCGCTATTGCTTACC
*
23313091 TTTAGCGGTGCTTCTTAT
130 TTTAGCGGCGCTTCTTAT
* *
23313109 AAAACGCCGCAAATTTTTTTCA-TTTGAACAAAACGACGCCGTTTTGCTGTTCTAAA-TTTTTTT
1 AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTT
*
23313172 ATTTTTTTAATAAATTGATTTATTCTTTGCGGCG-TTTTCTATAAAAACGCCGCTATT
66 ATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTCTA-GAAAACGCCGCTATT
23313229 TCATTTTGAA
Statistics
Matches: 770, Mismatches: 51, Indels: 39
0.90 0.06 0.05
Matches are distributed among these distances:
138 76 0.10
139 49 0.06
140 11 0.01
141 117 0.15
142 5 0.01
144 6 0.01
145 106 0.14
146 133 0.17
147 160 0.21
148 107 0.14
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (147 bp):
AAAACGCCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTT
ATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTCTAGAAAACGCCGCTATTGCTTACCT
TTAGCGGCGCTTCTTAT
Found at i:23312978 original size:434 final size:427
Alignment explanation
Indices: 23312243--23313212 Score: 1466
Period size: 434 Copynumber: 2.2 Consensus size: 427
23312233 TATATATATA
* * * *
23312243 AAAACCCCGCAAATTTTTTTTATTTTGAACAAAATGAT-GCCGTTTTGTTATTCTAAATTTTTTT
1 AAAACGCCGCAAATTTTTTTCATTTTGAACAAAA-CATCGCCGTTTTGCTATTCTAAATTTTTTT
* * *
23312307 TATTTTTTTATAAATTGATTTATTCTTTGCGGCATTTTTATAGAAAACACCGCTATTGCTTACCT
65 TATTTTTTAATAAATTGATTTATTCTTTGCGGC-GTTTTCT----AACACCGCTATTGCTTACCT
* * *
23312372 TTAGCGGTGCTTCTTAAAAAACGCCGTAAAATTTTTCATTTTAAACGAAACGACGCCGTTTTGCT
125 TTAGCGGCGCTTCTTAAAAAACGCCGCAAAATTTTTCATTTTAAACAAAACGACGCCGTTTTGCT
* *
23312437 ATTCTAAATTTTTTTTAAAAAATTGATTTATTCTTTGCGGCGTTTTTCTGGAAAACGCCGCTATT
190 ATTCTAAATTTTTTTTAAAAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATT
* *** *
23312502 GCTTACCTTTAGCGGCGCTTCTTATAAAACGTTGCAAAATTTTTTCATTTTGAACAAAACGACGT
255 GCTTACCTTTAGCGACGCTTCTTATAAAACACCGCAAAATTTTTTCATTTTGAACAAAACGACGC
*
23312567 CGTTTTGCTATTCT-AAATTTTTTTTATTTTTTTTATAAATTGATTTATTCTTTGCGGCGTTTTT
320 CGTTTTGCTATTCTAAAATTTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTT
* *
23312631 CTGGAAAACGCCGCAATTGCTTACCTTTAGCGGCGCTTCTTAT
385 ATAGAAAACGCCGCAATTGCTTACCTTTAGCGGCGCTTCTTAT
*
23312674 AAAACGCCGCAAATTTTTTTCATTTTGAACAAAACCTCGCCGTTTTGCTATTCTAAATTTTTTTT
1 AAAACGCCGCAAATTTTTTTCATTTTGAACAAAACATCGCCGTTTTGCTATTCTAAATTTTTTTT
*
23312739 ATTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTCTAACGCCGCTATTGCTTACCTTTAGCG
66 ATTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTCTAACACCGCTATTGCTTACCTTTAGCG
* * *
23312804 GCGCTTCTTATAAAACGCCGCAAAATTTTTTTATTTTGAACAAAACGACGCCGTTTTGCTATTCT
131 GCGCTTCTTAAAAAACGCCGCAAAA-TTTTTCATTTTAAACAAAACGACGCCGTTTTGCTATTCT
*
23312869 -AATTTTTTTTATTTTTTTAATAAATTTATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCT
195 AAATTTTTTTTA-------AA-AAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCT
*
23312933 ATTGCTTATCTTTAGCGACGCTTCTTATAAAACACCGCAAAATTTTTTCATTTTGAACAAAACGA
252 ATTGCTTACCTTTAGCGACGCTTCTTATAAAACACCGCAAAATTTTTTCATTTTGAACAAAACGA
23312998 CGCCGTTTTGCTATTCTAAAATTTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTT
317 CGCCGTTTTGCTATTCTAAAATTTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTT
* * *
23313063 TTTATAGAAAACGCCGCTATTGCTTACTTTTAGCGGTGCTTCTTAT
382 TTTATAGAAAACGCCGCAATTGCTTACCTTTAGCGGCGCTTCTTAT
*
23313109 AAAACGCCGCAAATTTTTTTCA-TTTGAACAAAACGA-CGCCGTTTTGCTGTTCTAAA-TTTTTT
1 AAAACGCCGCAAATTTTTTTCATTTTGAACAAAAC-ATCGCCGTTTTGCTATTCTAAATTTTTTT
23313171 TATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTCTA
65 TA-TTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTCTA
23313213 TAAAAACGCC
Statistics
Matches: 494, Mismatches: 32, Indels: 23
0.90 0.06 0.04
Matches are distributed among these distances:
426 58 0.12
427 36 0.07
430 6 0.01
431 89 0.18
433 10 0.02
434 186 0.38
435 109 0.22
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (427 bp):
AAAACGCCGCAAATTTTTTTCATTTTGAACAAAACATCGCCGTTTTGCTATTCTAAATTTTTTTT
ATTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTCTAACACCGCTATTGCTTACCTTTAGCG
GCGCTTCTTAAAAAACGCCGCAAAATTTTTCATTTTAAACAAAACGACGCCGTTTTGCTATTCTA
AATTTTTTTTAAAAAATTGATTTATTCTTTGCGGCGTTTTTATAGAAAACGCCGCTATTGCTTAC
CTTTAGCGACGCTTCTTATAAAACACCGCAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTT
GCTATTCTAAAATTTTTTTTATTTTTTTAATAAATTGATTTATTCTTTGCGGCGTTTTTATAGAA
AACGCCGCAATTGCTTACCTTTAGCGGCGCTTCTTAT
Found at i:23313618 original size:15 final size:15
Alignment explanation
Indices: 23313598--23313691 Score: 63
Period size: 15 Copynumber: 6.4 Consensus size: 15
23313588 ACTCGACCCC
*
23313598 TAAATCCCTAAACCT
1 TAAACCCCTAAACCT
*
23313613 TAAATCCCT-AACTCT
1 TAAACCCCTAAAC-CT
*
23313628 T-AACCCCT-AACAT
1 TAAACCCCTAAACCT
*
23313641 CTAACCCCCTAAACCT
1 -TAAACCCCTAAACCT
*
23313657 CT-AACCCCAAAACCT
1 -TAAACCCCTAAACCT
* *
23313672 TAAA-TCCTAACCCT
1 TAAACCCCTAAACCT
23313686 TAAACC
1 TAAACC
23313692 ATAATCCCTA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
13 1 0.02
14 25 0.40
15 31 0.49
16 6 0.10
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.23
Consensus pattern (15 bp):
TAAACCCCTAAACCT
Found at i:23313728 original size:15 final size:15
Alignment explanation
Indices: 23313672--23313732 Score: 67
Period size: 14 Copynumber: 4.3 Consensus size: 15
23313662 CCCAAAACCT
23313672 TAAATCC-TAA-CCC
1 TAAATCCATAATCCC
23313685 TTAAA-CCATAATCCC
1 -TAAATCCATAATCCC
*
23313700 T-AATTCATAATCCC
1 TAAATCCATAATCCC
*
23313714 TAAATCCATACTCCC
1 TAAATCCATAATCCC
23313729 TAAA
1 TAAA
23313733 CCTTAAATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
13 4 0.10
14 18 0.45
15 18 0.45
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:23314159 original size:268 final size:268
Alignment explanation
Indices: 23313677--23314369 Score: 1176
Period size: 268 Copynumber: 2.6 Consensus size: 268
23313667 AACCTTAAAT
* * * *
23313677 CCTAACCCTTAAACCATAATCCCTAAT-TCATAATCCCTAAATCCATACTCCCTAAACCTT-AAA
1 CCTAAACCTTAAATCATAACCCCTAATCT-ATAATCCCTAAACCCATACTCCCTAAACCTTAAAA
23313740 TATGAACTCCTAAACCGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAAC
65 TATGAACTCCTAAACCGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAAC
23313805 AAATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAAT
130 AAATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAAT
*
23313870 TAATCTAAACCCAAAACCTTAACTCGACCCCTAAATCCCTAACTTTTAATCCCTAAA-CCTTGAA
195 TAATCTAAACCCAAAACCTTAACTCGACCCCTAAATCCCTAACTTTTAATCCCTAAACCCCT-AA
*
23313934 CCCTCTAACC
259 CACTCTAACC
*
23313944 CCTAAACCTTAAATCATAACCCCTAATCTATAATCCCTAAACCCATACTCCTTAAACCTTAAAAT
1 CCTAAACCTTAAATCATAACCCCTAATCTATAATCCCTAAACCCATACTCCCTAAACCTTAAAAT
* *
23314009 ATGAACTCCTAAATCGGCTTTAAATCTTAAATTAATCATGTACCCTAAACTAAAAACCCTAAACA
66 ATGAACTCCTAAACCGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACA
23314074 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATT
131 AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATT
*
23314139 AATCTAAACCCAAAACCTTAACTCGACCCCTGAATCCCTAACTTTTAATCCCTAAACCCCTAACA
196 AATCTAAACCCAAAACCTTAACTCGACCCCTAAATCCCTAACTTTTAATCCCTAAACCCCTAACA
*
23314204 TTCTAACC
261 CTCTAACC
* * *
23314212 CCTAAACCTTAAATCCTAACCCCTAATCCATAATCCCTAAACCCGTACTCCCTAAACCTTAAAAT
1 CCTAAACCTTAAATCATAACCCCTAATCTATAATCCCTAAACCCATACTCCCTAAACCTTAAAAT
* * * *
23314277 ATGAACTCCTAAACCGGCCTTAAATCTTAAATAAATCATATACCCTAAACCAAAAACCCTAAATA
66 ATGAACTCCTAAACCGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACA
*
23314342 AATTTATTATTATCTCATTTACAATTAT
131 AATTTATTATTATCTCTTTTACAATTAT
23314370 TTTAAATAAT
Statistics
Matches: 401, Mismatches: 22, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
267 53 0.13
268 345 0.86
269 3 0.01
ACGTcount: A:0.41, C:0.26, G:0.02, T:0.30
Consensus pattern (268 bp):
CCTAAACCTTAAATCATAACCCCTAATCTATAATCCCTAAACCCATACTCCCTAAACCTTAAAAT
ATGAACTCCTAAACCGGCTTTAAATCTTAAATTAATCATATACCCTAAACTAAAAACCCTAAACA
AATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATT
AATCTAAACCCAAAACCTTAACTCGACCCCTAAATCCCTAACTTTTAATCCCTAAACCCCTAACA
CTCTAACC
Found at i:23314232 original size:21 final size:23
Alignment explanation
Indices: 23314188--23314237 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 23
23314178 AACTTTTAAT
*
23314188 CCCTAAACCCCTAACATTCTAAC
1 CCCTAAACCCCTAACATCCTAAC
*
23314211 CCCTAAA-CCTTAA-ATCCTAAC
1 CCCTAAACCCCTAACATCCTAAC
23314232 CCCTAA
1 CCCTAA
23314238 TCCATAATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 13 0.52
22 5 0.20
23 7 0.28
ACGTcount: A:0.36, C:0.42, G:0.00, T:0.22
Consensus pattern (23 bp):
CCCTAAACCCCTAACATCCTAAC
Found at i:23314251 original size:21 final size:21
Alignment explanation
Indices: 23314188--23314244 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
23314178 AACTTTTAAT
* *
23314188 CCCTAAACCCCTAACATTCTAAC
1 CCCTAAA-CCATAA-ATCCTAAC
*
23314211 CCCTAAACCTTAAATCCTAAC
1 CCCTAAACCATAAATCCTAAC
*
23314232 CCCTAATCCATAA
1 CCCTAAACCATAA
23314245 TCCCTAAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 18 0.60
22 5 0.17
23 7 0.23
ACGTcount: A:0.37, C:0.40, G:0.00, T:0.23
Consensus pattern (21 bp):
CCCTAAACCATAAATCCTAAC
Found at i:23314744 original size:113 final size:113
Alignment explanation
Indices: 23314522--23314885 Score: 520
Period size: 114 Copynumber: 3.2 Consensus size: 113
23314512 TATTTTTAGC
23314522 GGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTA
1 GGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTA
* * *
23314587 AAT-CCCTAAAGCTCAGAAAACGGCATCGTGGGGCTTAGGTTTTTTTGT
66 AATCCCCGAAAGCTCA-AAAACGGCGTCGTTGGGCTTAGGTTTTTTTGT
* ** *
23314635 GGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTTTAAACGCCGCAA
1 GGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTA
*
23314700 AATCCCCGAAAGCTCATAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGC
66 AATCCCCGAAAGCTCA-AAAACGGCGTCGTTGGGCTTAGGTTTTTTTGT
* * * *
23314749 GGCGCTTTTGCAAAAATGCCGCTAAAGCCCAGAGCATTAGCGGCGCTTTCTTAGAAACGCCGCTA
1 GGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTA
* ** *
23314814 AATCCCCGAAAGCTCGAGAAACAACGTCGTTGAG-TTAGG-TTTTTTGT
66 AATCCCCGAAAGCTC-AAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGT
23314861 GGCG-TTTTCTCAAAAACGCCGCTAA
1 GGCGCTTTTC-CAAAAACGCCGCTAA
23314886 TGCTTATTTT
Statistics
Matches: 225, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
111 4 0.02
112 25 0.11
113 69 0.31
114 126 0.56
115 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (113 bp):
GGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTA
AATCCCCGAAAGCTCAAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGT
Found at i:23314977 original size:12 final size:12
Alignment explanation
Indices: 23314960--23314985 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23314950 TTTTTTATCC
23314960 AAACGCCGCTAA
1 AAACGCCGCTAA
23314972 AAACGCCGCTAA
1 AAACGCCGCTAA
23314984 AA
1 AA
23314986 TCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:23324542 original size:6 final size:6
Alignment explanation
Indices: 23324531--23324555 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
23324521 GTTAGATGGT
23324531 TTAGGG TTAGGG TTAGGG TTAGGG T
1 TTAGGG TTAGGG TTAGGG TTAGGG T
23324556 ACATATTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (6 bp):
TTAGGG
Found at i:23326752 original size:57 final size:57
Alignment explanation
Indices: 23326682--23326802 Score: 156
Period size: 57 Copynumber: 2.1 Consensus size: 57
23326672 ATTTTTTAAG
*
23326682 TCATTTTCATTTTGGA-GAAAGCCACATTC-TTTTCCAAATTATTCTATTTCTCCATTT
1 TCATTTTCATTTTGGAGGAAA-CCACAATCATTTT-CAAATTATTCTATTTCTCCATTT
* * * * *
23326739 TCATTTTTATTTTGGAGGAAACCATAATCATTTTCAAATTTTTCTGTTTCTCTATTT
1 TCATTTTCATTTTGGAGGAAACCACAATCATTTTCAAATTATTCTATTTCTCCATTT
23326796 TCATTTT
1 TCATTTT
23326803 GGAGAAAACC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
57 48 0.86
58 8 0.14
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.51
Consensus pattern (57 bp):
TCATTTTCATTTTGGAGGAAACCACAATCATTTTCAAATTATTCTATTTCTCCATTT
Found at i:23336063 original size:25 final size:25
Alignment explanation
Indices: 23336022--23336096 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
23336012 TTCTCACCCT
23336022 AATTTTACCCTAGTAAAATTTTGAA
1 AATTTTACCCTAGTAAAATTTTGAA
* *
23336047 AATTTTA-CCTCGTTAAAATTTTGAT
1 AATTTTACCCTAG-TAAAATTTTGAA
** *
23336072 GGTTTTACCCCTAATAAAATTTTGA
1 AATTTTA-CCCTAGTAAAATTTTGA
23336097 GAAAATTCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
24 4 0.10
25 23 0.56
26 11 0.27
27 3 0.07
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (25 bp):
AATTTTACCCTAGTAAAATTTTGAA
Found at i:23350837 original size:36 final size:36
Alignment explanation
Indices: 23350778--23350854 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
23350768 ATTCCAACTA
* *
23350778 AAACACACCAGATGCTCATAAGAGCTAATCAATCTG
1 AAACACACCAGATGCTCAGAAGAGCTAATCAATCCG
* *
23350814 AAACACACCA-ATGGCTCCGAAGAGCTAATCTATCCG
1 AAACACACCAGAT-GCTCAGAAGAGCTAATCAATCCG
23350850 AAACA
1 AAACA
23350855 TATATATATC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
35 2 0.06
36 34 0.94
ACGTcount: A:0.42, C:0.27, G:0.14, T:0.17
Consensus pattern (36 bp):
AAACACACCAGATGCTCAGAAGAGCTAATCAATCCG
Found at i:23356799 original size:53 final size:53
Alignment explanation
Indices: 23356727--23356829 Score: 179
Period size: 53 Copynumber: 1.9 Consensus size: 53
23356717 AAAAATATCA
23356727 TTTTATGGTGAATAAGGGGATTGTCTTGGGGCATTAAATATCTAAAAAAGTCG
1 TTTTATGGTGAATAAGGGGATTGTCTTGGGGCATTAAATATCTAAAAAAGTCG
* **
23356780 TTTTATGTTGAATGGGGGGATTGTCTTGGGGCATTAAATATCTAAAAAAG
1 TTTTATGGTGAATAAGGGGATTGTCTTGGGGCATTAAATATCTAAAAAAG
23356830 GGTTGAAGGA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (53 bp):
TTTTATGGTGAATAAGGGGATTGTCTTGGGGCATTAAATATCTAAAAAAGTCG
Found at i:23362755 original size:15 final size:16
Alignment explanation
Indices: 23362725--23362758 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
23362715 AAAATGTAAT
23362725 TTTATCATTTTAATAA
1 TTTATCATTTTAATAA
*
23362741 TTTAT-ATTTTTATAA
1 TTTATCATTTTAATAA
23362756 TTT
1 TTT
23362759 TTAAAGGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTATCATTTTAATAA
Found at i:23365255 original size:4 final size:4
Alignment explanation
Indices: 23365246--23365312 Score: 57
Period size: 4 Copynumber: 17.0 Consensus size: 4
23365236 ATATTTGTTT
* * * *
23365246 TAAA TAAA TAAA TAAA TAAA TAAA AACAA AAAA TATA TATA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA-AA TAAA TAAA TAAA TAAA TAAA
* *
23365295 -AAC TAAT TAAA -AAA TAAA
1 TAAA TAAA TAAA TAAA TAAA
23365313 AGAAATAATT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
3 5 0.09
4 44 0.83
5 4 0.08
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:23365746 original size:19 final size:21
Alignment explanation
Indices: 23365708--23365746 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
23365698 CCTTTTTTAA
*
23365708 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
23365729 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
23365747 AAAGAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:23365954 original size:22 final size:21
Alignment explanation
Indices: 23365919--23365976 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
23365909 AAAGGGTATC
* * *
23365919 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCCAAGAT
23365940 TACAAAATCATATCTTCCAAGAT
1 TAC-AAATCATATC-TCCAAGAT
*
23365963 TACATATCATATCT
1 TACAAATCATATCT
23365977 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.55
23 10 0.32
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (21 bp):
TACAAATCATATCTCCAAGAT
Found at i:23365970 original size:17 final size:17
Alignment explanation
Indices: 23365948--23366000 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
23365938 ATTACAAAAT
23365948 CATATCTTCCAAGATTA
1 CATATCTTCCAAGATTA
* *
23365965 CATATCATATCTAAGATTG
1 CATATC-T-TCCAAGATTA
* *
23365984 CATATCCTCGAAGATTA
1 CATATCTTCCAAGATTA
23366001 TGTTTCCATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 14 0.48
18 1 0.03
19 14 0.48
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (17 bp):
CATATCTTCCAAGATTA
Found at i:23365982 original size:19 final size:19
Alignment explanation
Indices: 23365932--23365989 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 19
23365922 AAATTAAATC
*
23365932 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
23365952 TCTTCCAAGATTACATATCATA
1 TC-T--AAGATTACATATCATA
*
23365974 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
23365990 CTCGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 12 0.36
20 2 0.06
21 2 0.06
22 9 0.27
23 8 0.24
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:23366481 original size:42 final size:44
Alignment explanation
Indices: 23366432--23366535 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 44
23366422 GATCTACTCT
* *
23366432 ACTGCAACTTCAGAGAGA-A-GATCTGTGGT-TTTAATCCGCTCC
1 ACTGCAACTTCAGAGAGACAGGATCTGT-GTATTTAATACGCCCC
* * * * *
23366474 ACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAGTATGCCCC
1 ACTGCAACTTCAGAGAGACAGGATCTGTGTATTTAATACGCCCC
23366518 ACTGCAACTTCAGAGAGA
1 ACTGCAACTTCAGAGAGA
23366536 TAAGATTCGT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 17 0.33
43 2 0.04
44 32 0.63
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (44 bp):
ACTGCAACTTCAGAGAGACAGGATCTGTGTATTTAATACGCCCC
Found at i:23366694 original size:84 final size:84
Alignment explanation
Indices: 23366603--23366883 Score: 267
Period size: 84 Copynumber: 3.3 Consensus size: 84
23366593 ACTTAGTCTG
* *
23366603 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATTTGCTCTTTGCAACTTCAGAGAGATAA
1 CTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATTTGCTCTCTGCAACTTCAGAGAGATAA
23366668 GATCTAAGGTTTTAATCCA
66 GATCTAAGGTTTTAATCCA
* * *** * * *
23366687 CTCCACTGCAACTTCAGGAAGATATGATTATCGGC-TTTAACCTGCTCCACTGCAACTTCAGGGA
1 CTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATT----TGCT-CTCTGCAACTTCAGAGA
* **** * * **
23366751 GATAAGATTTTCCATCTTCAGTCTG
61 GATAAGATCTAAGGT-TTTAATCCA
* * * * *
23366776 CCCCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAGAGATAA
1 CTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATTTGCTCTCTGCAACTTCAGAGAGATAA
*
23366841 GATCCAAGGTTTTAATCCA
66 GATCTAAGGTTTTAATCCA
*
23366860 CTCCACTGTAACTTCAGGAAGATA
1 CTCCACTGCAACTTCAGGAAGATA
23366884 GGATTATTGG
Statistics
Matches: 145, Mismatches: 45, Indels: 14
0.71 0.22 0.07
Matches are distributed among these distances:
83 2 0.01
84 55 0.38
85 23 0.16
86 4 0.03
87 4 0.03
88 24 0.17
89 32 0.22
90 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (84 bp):
CTCCACTGCAACTTCAGGAAGATAAGACTAGATGCGATTTGCTCTCTGCAACTTCAGAGAGATAA
GATCTAAGGTTTTAATCCA
Found at i:23366696 original size:173 final size:172
Alignment explanation
Indices: 23366516--23366977 Score: 571
Period size: 173 Copynumber: 2.7 Consensus size: 172
23366506 TTAGTATGCC
* * ***
23366516 CCACTGCAACTTCA-GAGAGATAAGATTCGTCATCTTCAGTTTGC-CTCACTGCAACTTCA-GGA
1 CCACTGCAACTTCAGGA-AGATAAGATT-ATCAGCTTCAACCTGCTC-CACTGCAACTTCAGGGA
*
23366578 GGATAAAACTTGATT-A-CTT-AGTCTGCTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCG
63 -GATAAAA-TT--TTCATCTTCAGTCTGCCCCACTGCAACTTCAGGAG-GATAAGACTAGATGCG
* * * *
23366639 ATTTGCTCTTTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACT
123 ATCTGCTCTCTGCAACTTCAAAGAGATAAGATCCAAGGTTTTAATCCACT
* * *
23366689 CCACTGCAACTTCAGGAAGATATGATTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGGAAGATAAGATTATCAGCTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
* *
23366754 AAGATTTTCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCT
66 AAAATTTT-CATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTAGATGCGATCTGCT
23366819 CTCTGCAACTTCAAAGAGATAAGATCCAAGGTTTTAATCCACT
130 CTCTGCAACTTCAAAGAGATAAGATCCAAGGTTTTAATCCACT
* * ** *
23366862 CCACTGTAACTTCAGGAAGATAGGATTATTGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGGAAGATAAGATTATCAGCTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
* *
23366927 AAGATTTGTCATCTTCAGTCT-CCCTCACTACAACTTCAGGAGGATAAGACT
66 AAAATTT-TCATCTTCAGTCTGCCC-CACTGCAACTTCAGGAGGATAAGACT
23366978 TGCTTGCTTA
Statistics
Matches: 260, Mismatches: 19, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
169 2 0.01
171 3 0.01
172 34 0.13
173 217 0.83
174 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (172 bp):
CCACTGCAACTTCAGGAAGATAAGATTATCAGCTTCAACCTGCTCCACTGCAACTTCAGGGAGAT
AAAATTTTCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTAGATGCGATCTGCTC
TCTGCAACTTCAAAGAGATAAGATCCAAGGTTTTAATCCACT
Found at i:23366739 original size:217 final size:215
Alignment explanation
Indices: 23366340--23366808 Score: 570
Period size: 217 Copynumber: 2.2 Consensus size: 215
23366330 TTATTTAGTA
** * * * *
23366340 TGCCCCACTGCAA-TTCCAAGG-GGATAAGGCTTGCTTTCTTGAGTTTGCTCCACTGTAACTTCA
1 TGCCCCACTGCAACTT-C-AGGAGGATAAAACTTGATTACTT-AGTCTGCTCCACTGCAACTTCA
* * **
23366403 GGGAGATAAGACTCGATGTGATCTACTCTACTGCAACTTCAGAGAGAAGATCTGTGGTTTTAATC
63 GGGAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGAAGATCTAAGGTTTTAATC
* * * **
23366468 CGCTCCACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAGTATGCCCCACTGCAACTTCAGAG
128 CACTCCACTGCAACTTCAGGAAGACAGGATTTG-TGATTTAACATGCCCCACTGCAACTTCAGAG
*
23366533 AGATAAGATTCGT-CATCTTCAGTT
192 AGATAAGATT-GTCCATCTTCAGTC
*
23366557 TGCCTCACTGCAACTTCAGGAGGATAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGG
1 TGCCCCACTGCAACTTCAGGAGGATAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGG
* * *
23366622 AGATAAGACTAGATGCGATTTGCTCT-TTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCC
66 AGATAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAG--AAGATCTAAGGTTTTAATCC
* * * * * *
23366686 ACTCCACTGCAACTTCAGGAAGATATGATTATCG-GCTTTAACCTGCTCCACTGCAACTTCAGGG
129 ACTCCACTGCAACTTCAGGAAGACAGGATT-T-GTGATTTAACATGCCCCACTGCAACTTCAGAG
*
23366750 AGATAAGATTTTCCATCTTCAGTC
192 AGATAAGATTGTCCATCTTCAGTC
*
23366774 TGCCCCACTGCAACTTCAGGAGGATAAGACTTGAT
1 TGCCCCACTGCAACTTCAGGAGGATAAAACTTGAT
23366809 GCGATCTGCT
Statistics
Matches: 216, Mismatches: 29, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
215 15 0.07
216 49 0.23
217 148 0.69
218 3 0.01
219 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (215 bp):
TGCCCCACTGCAACTTCAGGAGGATAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGG
AGATAAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGAAGATCTAAGGTTTTAATCCAC
TCCACTGCAACTTCAGGAAGACAGGATTTGTGATTTAACATGCCCCACTGCAACTTCAGAGAGAT
AAGATTGTCCATCTTCAGTC
Found at i:23366875 original size:217 final size:214
Alignment explanation
Indices: 23366427--23367315 Score: 817
Period size: 217 Copynumber: 4.1 Consensus size: 214
23366417 GATGTGATCT
* * *
23366427 ACTCTACTGCAACTTCAGAGAG--AAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGA
1 ACTCCACTGCAACTTCAGAGAGATAAGAT-TATGGCTTTAATCCGCTCCACTGCAACTTCAGGGA
* * * *
23366490 GACAGGATTTGTTTATTTAGTATGCCC-CACTGCAACTTCA-GAGAGATAAGA-TTCGTCAT-CT
65 GATAAGATTTG--TCTTTAGTCTGCCCTCACTGCAACTTCAGGAG-GATAAGACTT-G-CATACT
* * * * * * *
23366551 TCAGTTTGCCTCACTGCAACTTCAGGAGGATAAAACTTGATTACTTAGTCTGCTCCACTGCAACT
125 T-AGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTAGA-TGC-GA-TCTGCT-CTCTGCAACT
* * *** **
23366616 TCAGGGAGATAAGA--CTAGA-TGCGATTT
185 TCAGAGAGATAAGATCCAAGATTTTAATCC
* ** * * * *
23366643 GCT-CTTTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAA
1 ACTCCACTGCAACTTCAGAGAGATAAGAT-TATGGCTTTAATCCGCTCCACTGCAACTTCAGGGA
* * ** * * *
23366707 GATATGATTATCGGCTTTAACCTGCTC-CACTGCAACTTCAGG-GAGATAAGATTTTCCAT-CTT
65 GATAAGATT-T-GTCTTTAGTCTGCCCTCACTGCAACTTCAGGAG-GATAAGA-CTTGCATACTT
* *
23366769 CAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAA
126 -AGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
*
23366834 GAGATAAGATCCAAGGTTTTAATCC
190 GAGATAAGATCCAAGATTTTAATCC
* *
23366859 ACTCCACTGTAACTTCAG-GAAGATAGGATTATTGGCTTTAA-CCTGCTCCACTGCAACTTCAGG
1 ACTCCACTGCAACTTCAGAG-AGATAAGATTA-TGGCTTTAATCC-GCTCCACTGCAACTTCAGG
* * *
23366922 GAGATAAGATTTGTCATCTTCAGTCT-CCCTCACTACAACTTCAGGAGGATAAGACTTGCTTGCT
63 GAGATAAGATTTGTC-T-TT-AGTCTGCCCTCACTGCAACTTCAGGAGGATAAGACTTGCATACT
* *
23366986 TAGTCTGCTCCATTGCAACTTCAAGGA-GATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAG
125 TAGTCTGCCCCACTGCAACTTC-AGGAGGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAG
***
23367050 AGAGATAAGATCTGTGATTTTAATCC
189 AGAGATAAGATCCAAGATTTTAATCC
* * * * * ** *
23367076 GCTCCACTGCAACTTCAGGGAGATAGGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGA
1 ACTCCACTGCAACTTCAGAGAGATAAGATTAT-GGCTTTAATCCGCTCCACTGCAACTTCAGGGA
* * *
23367141 GATAAGATTTGCCATCTTCAGTTTG-CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTA
65 GATAAGATTTG---TCTTTAGTCTGCCCTCACTGCAACTTCAGGAGGATAAGACTTGCATACTTA
* *
23367205 GTCTGCTCCACTGCAACTTCAGG-GAGATAATACTAGATGCGATCTGCTCTCTGCAACTTCAGAG
127 GTCTGCCCCACTGCAACTTCAGGAG-GATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAG
*
23367269 AGATAAGATCCAAAATTTTAATCC
191 AGATAAGATCCAAGATTTTAATCC
*
23367293 ACTCCACTGCAACTTCAGGGAGA
1 ACTCCACTGCAACTTCAGAGAGA
23367316 CAAGGCTTGG
Statistics
Matches: 567, Mismatches: 76, Indels: 59
0.81 0.11 0.08
Matches are distributed among these distances:
213 21 0.04
214 6 0.01
215 21 0.04
216 20 0.04
217 457 0.81
218 35 0.06
219 5 0.01
220 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (214 bp):
ACTCCACTGCAACTTCAGAGAGATAAGATTATGGCTTTAATCCGCTCCACTGCAACTTCAGGGAG
ATAAGATTTGTCTTTAGTCTGCCCTCACTGCAACTTCAGGAGGATAAGACTTGCATACTTAGTCT
GCCCCACTGCAACTTCAGGAGGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
AGATCCAAGATTTTAATCC
Found at i:23366929 original size:390 final size:389
Alignment explanation
Indices: 23366389--23367196 Score: 1154
Period size: 390 Copynumber: 2.1 Consensus size: 389
23366379 TGAGTTTGCT
* * *
23366389 CCACTGTAACTTCAGG-GAGATAAGACTCGATGTGATCTACTCTACTGCAACTTCAGAGAGAAGA
1 CCACTGCAACTTCAGGAG-GATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGAAGA
*** * * ** **
23366453 TCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAGTATGCCCC
65 TCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGACAGGATTTGTGGATTTAACATGCCCC
* * *
23366518 ACTGCAACTTCAGAGAGATAAGATTCGTCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGATA
130 ACTGCAACTTCAGAGAGATAAGATTCGTCATCTTCAGTCTCCCTCACTACAACTTCAGGAGGATA
* *
23366583 AAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATTTGCTCT
195 AAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCT
* * *
23366648 TTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATATG
260 CTGCAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATAGG
* * *
23366713 ATTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTCAGTCTGCC
325 ATTATCGACTTTAACCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCC
* *
23366778 CCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCT-CTGCAACTTCAAAGAGATAAG
1 CCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTACTCTACTGCAACTTC--AGAGAGAAG
* * * * *
23366842 ATCCAAGGTTTTAATCCACTCCACTGTAACTTCAGGAAGATAGGATTAT-TGGCTTTAACCTGCT
64 ATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGACAGGATT-TGTGGATTTAACATGCC
* *
23366906 CCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTCCCTCACTACAACTTCAGGAGGA
128 CCACTGCAACTTCAGAGAGATAAGATTCGTCATCTTCAGTCTCCCTCACTACAACTTCAGGAGGA
* * * *
23366971 TAAGACTTGCTTGCTTAGTCTGCTCCATTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCT
193 TAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCT
** * *
23367036 CTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
258 CTCTGCAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
* ** *
23367101 GGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCAGTTTG
323 GGATTATCGACTTTAACCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
23367166 CC
388 CC
*
23367168 TCACTGCAACTTCAGGAGGATAAGACTTG
1 CCACTGCAACTTCAGGAGGATAAGACTTG
23367197 CTTACTTAGT
Statistics
Matches: 370, Mismatches: 45, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
388 10 0.03
389 37 0.10
390 322 0.87
391 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (389 bp):
CCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGAAGAT
CCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGACAGGATTTGTGGATTTAACATGCCCCA
CTGCAACTTCAGAGAGATAAGATTCGTCATCTTCAGTCTCCCTCACTACAACTTCAGGAGGATAA
AACTTGATTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCTC
TGCAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGA
TTATCGACTTTAACCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCC
Found at i:23366978 original size:173 final size:173
Alignment explanation
Indices: 23366597--23367019 Score: 629
Period size: 173 Copynumber: 2.4 Consensus size: 173
23366587 TTGATTACTT
* * * * *
23366597 AGTCTGCTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCGATTTGCTCTTTGCAACTTCAGA
1 AGTCTGCCCCACTGCAACTTCAGGAG-GATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAA
* *
23366661 GAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATATGATTATCGGCTTTA
65 GAGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTA
23366726 ACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTC
130 ACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTC
23366770 AGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAG
1 AGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAG
* *
23366835 AGATAAGATCCAAGGTTTTAATCCACTCCACTGTAACTTCAGGAAGATAGGATTATTGGCTTTAA
66 AGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAA
23366900 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-CATCTTC
131 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-TCCATCTTC
* * *
23366943 AGTCT-CCCTCACTACAACTTCAGGAGGATAAGACTTGCTTGCTTAGTCTGCTC-CATTGCAACT
1 AGTCTGCCC-CACTGCAACTTCAGGAGGATAAGACTTG-ATGC-GA-TCTGCTCTC--TGCAACT
*
23367006 TCAAGGAGATAAGA
60 TCAAAGAGATAAGA
23367020 CTAGATGCGA
Statistics
Matches: 229, Mismatches: 13, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
172 3 0.01
173 192 0.84
174 5 0.02
175 2 0.01
176 7 0.03
177 20 0.09
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (173 bp):
AGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAG
AGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAA
CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTC
Found at i:23367048 original size:173 final size:172
Alignment explanation
Indices: 23366597--23367105 Score: 561
Period size: 173 Copynumber: 2.9 Consensus size: 172
23366587 TTGATTACTT
* * * * * *
23366597 AGTCTGCTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCGATTTGCTCTTTGCAACTTCAGA
1 AGTCTGCCCCACTACAACTTCAGGAG-GATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAA
* * ** * *
23366661 GAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATATGATTATCGGCTTTA
65 GAGATAAGA-CCAAGGATGCAATCCACTCCACTGCAACTTCAGGAAGATAAGATTATTGGCTTTA
23366726 ACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTC
129 ACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTC
*
23366770 AGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAG
1 AGTCTGCCCCACTACAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAG
* ** * *
23366835 AGATAAGATCCAAGGTTTTAATCCACTCCACTGTAACTTCAGGAAGATAGGATTATTGGCTTTAA
66 AGATAAGA-CCAAGGATGCAATCCACTCCACTGCAACTTCAGGAAGATAAGATTATTGGCTTTAA
23366900 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-CATCTTC
130 CCTGCTCCACTGCAACTTCAGGGAGATAAGATTT-TCCATCTTC
* *
23366943 AGTCT-CCCTCACTACAACTTCAGGAGGATAAGACTTGCTTGCTTAGTCTGCTC-CATTGCAACT
1 AGTCTGCCC-CACTACAACTTCAGGAGGATAAGACTTG-ATGC-GA-TCTGCTCTC--TGCAACT
* * * ** * *
23367006 TCAAGGAGATAAGA-CTA-GATGCGATCTGCT-CTCTGCAACTTCA-GAGAGATAAGATCT-GTG
60 TCAAAGAGATAAGACCAAGGATGCAATCCACTCCACTGCAACTTCAGGA-AGATAAGAT-TATTG
** *
23367066 ATTTTAATCC-GCTCCACTGCAACTTCAGGGAGATAGGATT
123 GCTTTAA-CCTGCTCCACTGCAACTTCAGGGAGATAAGATT
23367106 GTCGACTTTA
Statistics
Matches: 298, Mismatches: 27, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
172 5 0.02
173 247 0.83
174 15 0.05
175 4 0.01
176 7 0.02
177 20 0.07
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (172 bp):
AGTCTGCCCCACTACAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAG
AGATAAGACCAAGGATGCAATCCACTCCACTGCAACTTCAGGAAGATAAGATTATTGGCTTTAAC
CTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTC
Found at i:23367300 original size:390 final size:390
Alignment explanation
Indices: 23366516--23367315 Score: 1047
Period size: 390 Copynumber: 2.1 Consensus size: 390
23366506 TTAGTATGCC
* * * *
23366516 CCACTGCAACTTCAGAGAGATAAGATTCGTCATCTTCAGTTTGCCTCACTGCAACTTCAGGAGGA
1 CCACTGCAACTTCAGGGAGATAAGATTCGTCATCTTCAGTCTCCCTCACTACAACTTCAGGAGGA
* *
23366581 TAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATTTGCT
66 TAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCT
* *
23366646 CTTTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATA
131 CTCTGCAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
* * * *
23366711 TGATTATCGGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGATTTTCCATCTTCAGTCTG
196 GGATTATCGACTTTAACCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
* *
23366776 CCCCACTGCAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAAAGAGATAA
261 CCCCACTGCAACTTCAGGAGGATAAGACTTGATACGATCTGCTCACTGCAACTTCAAAGAGATAA
* * ** * * * *** *
23366841 GATCCAAGGTTTTAATCCACTCCACTGTAACTTCAGGAAGATAGGATTATTGGCTTTAACCTGCT
326 GATACAAGGATGCAATCCACTCCACTGCAACTTCAGGAAGATAAGATCATAAACTTTAACCTACT
*
23366906 CCACTGCAACTTCAGGGAGATAAGATTTGTCATCTTCAGTCTCCCTCACTACAACTTCAGGAGGA
1 CCACTGCAACTTCAGGGAGATAAGATTCGTCATCTTCAGTCTCCCTCACTACAACTTCAGGAGGA
* * * *
23366971 TAAGACTTGCTTGCTTAGTCTGCTCCATTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCT
66 TAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCT
** * *
23367036 CTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
131 CTCTGCAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
* ** *
23367101 GGATTGTCGACTTTAATTTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCAGTTTG
196 GGATTATCGACTTTAACCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
* * * **
23367166 CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAG
261 CCCCACTGCAACTTCAGGAGGATAAGACTTG-ATAC-GA-TCTGCT-CACTGCAACTTCAAAGAG
* * ** * *
23367231 AT-A-ATACTA-GATGCGATCTGCT-CTCTGCAACTTCA-GAGAGATAAGATCCA-AAATTTTAA
322 ATAAGATACAAGGATGCAATCCACTCCACTGCAACTTCAGGA-AGATAAGAT-CATAAACTTTAA
23367290 TCC-ACT
385 -CCTACT
23367296 CCACTGCAACTTCAGGGAGA
1 CCACTGCAACTTCAGGGAGA
23367316 CAAGGCTTGG
Statistics
Matches: 354, Mismatches: 49, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
389 2 0.01
390 311 0.88
391 12 0.03
392 5 0.01
393 7 0.02
394 17 0.05
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (390 bp):
CCACTGCAACTTCAGGGAGATAAGATTCGTCATCTTCAGTCTCCCTCACTACAACTTCAGGAGGA
TAAAACTTGATTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCT
CTCTGCAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
GGATTATCGACTTTAACCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
CCCCACTGCAACTTCAGGAGGATAAGACTTGATACGATCTGCTCACTGCAACTTCAAAGAGATAA
GATACAAGGATGCAATCCACTCCACTGCAACTTCAGGAAGATAAGATCATAAACTTTAACCTACT
Found at i:23367408 original size:132 final size:132
Alignment explanation
Indices: 23367307--23367718 Score: 644
Period size: 132 Copynumber: 3.1 Consensus size: 132
23367297 CACTGCAACT
* *
23367307 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATATGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCG
* * *
23367372 TCTTCGATCTGCTCCACTACTGTTTAGGGAGGTAAGATCTACAATCTTCAACCTACTCCGCTGCT
66 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
23367437 GC
131 GC
* * **
23367439 TCAGGGAGACAAGGCTTGGTGGATTAAATATGCTTCCCACTATCTTGGAAAGATAAGATTTTTCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCG
* * *
23367504 TCTTCAATCTTCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTT
66 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
23367569 GC
131 GC
*
23367571 TCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCG
* * * * * * *
23367636 TCCTCGATCTACTCTACTACTGCTTAAGGAGATAAGATCTACGATCCTCAACCTACTCCGTTGTT
66 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
23367701 GC
131 GC
23367703 TCAGGGAGACAAGGCT
1 TCAGGGAGACAAGGCT
23367719 AAGTGTTTCA
Statistics
Matches: 256, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 256 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (132 bp):
TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCG
TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
GC
Found at i:23374503 original size:19 final size:21
Alignment explanation
Indices: 23374465--23374503 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
23374455 CCTTTTTTAA
*
23374465 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
23374486 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
23374504 AAGAAAACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:23374719 original size:23 final size:24
Alignment explanation
Indices: 23374689--23374735 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
23374679 AAATTAAATC
23374689 TCTAAGATTACA-AAATCATATCT
1 TCTAAGATTACATAAATCATATCT
* *
23374712 TCTAAGATTGCATATATCATATCT
1 TCTAAGATTACATAAATCATATCT
23374736 AAGATTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (24 bp):
TCTAAGATTACATAAATCATATCT
Found at i:23391761 original size:38 final size:38
Alignment explanation
Indices: 23391719--23391795 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
23391709 TAAAGGGGAA
23391719 AGAAAATGAGAGAAAGAATCAAAGAATAAGAGAAGGAG
1 AGAAAATGAGAGAAAGAATCAAAGAATAAGAGAAGGAG
*
23391757 AGAAAATGAGAGAAAGAATCAAATAATAAGAGAAGGAG
1 AGAAAATGAGAGAAAGAATCAAAGAATAAGAGAAGGAG
23391795 A
1 A
23391796 ACAAGAAGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.61, C:0.03, G:0.27, T:0.09
Consensus pattern (38 bp):
AGAAAATGAGAGAAAGAATCAAAGAATAAGAGAAGGAG
Found at i:23392467 original size:21 final size:20
Alignment explanation
Indices: 23392443--23392492 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 20
23392433 AAGAATGGAG
23392443 AAATGATAATCTTGTT-AAGCC
1 AAATGATAAT-TTGTTCAAG-C
23392464 AAATG-TCAATTTGTTCGAAGC
1 AAATGAT-AATTTGTTC-AAGC
23392485 AAATGATA
1 AAATGATA
23392493 TCATTTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 6 0.24
21 15 0.60
22 4 0.16
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (20 bp):
AAATGATAATTTGTTCAAGC
Found at i:23404094 original size:19 final size:19
Alignment explanation
Indices: 23404070--23404107 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
23404060 TCCTGCACTT
23404070 GGAAGAAAAAGTAGAAAAA
1 GGAAGAAAAAGTAGAAAAA
*
23404089 GGAAGAAGAAGTAGAAAAA
1 GGAAGAAAAAGTAGAAAAA
23404108 AGAATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.05
Consensus pattern (19 bp):
GGAAGAAAAAGTAGAAAAA
Found at i:23408772 original size:25 final size:25
Alignment explanation
Indices: 23408744--23408814 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
23408734 AGCTATTCCA
* *
23408744 AGCTGAATAACGGGAAGCTCAAGTG
1 AGCTGAATAACAGGAAGCTCAAGCG
* * *
23408769 AGCTGTATACCAGGAAGCTCATGCG
1 AGCTGAATAACAGGAAGCTCAAGCG
* * *
23408794 AGCTGAGTATCAGCAAGCTCA
1 AGCTGAATAACAGGAAGCTCA
23408815 TAAGAGCTGT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.18
Consensus pattern (25 bp):
AGCTGAATAACAGGAAGCTCAAGCG
Found at i:23416111 original size:25 final size:25
Alignment explanation
Indices: 23416083--23416140 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
23416073 TGTAAACAGT
* * *
23416083 AAGCTCTTCCAAGCTGAATAATGGG
1 AAGCTCATCCAAGCTAAATAACGGG
* *
23416108 AAGCTCATGCGAGCTAAATAACGGG
1 AAGCTCATCCAAGCTAAATAACGGG
23416133 AAGCTCAT
1 AAGCTCAT
23416141 GTGAGCTGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (25 bp):
AAGCTCATCCAAGCTAAATAACGGG
Found at i:23416141 original size:25 final size:25
Alignment explanation
Indices: 23416094--23416165 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
23416084 AGCTCTTCCA
*
23416094 AGCTGAATAATGGGAAGCTCATGCG
1 AGCTGAATAACGGGAAGCTCATGCG
* *
23416119 AGCTAAATAACGGGAAGCTCATGTG
1 AGCTGAATAACGGGAAGCTCATGCG
* *
23416144 AGCTGTAT-ACAGGAAGCTCATG
1 AGCTGAATAACGGGAAGCTCATG
23416166 AGAGTTGAGT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 13 0.32
25 28 0.68
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (25 bp):
AGCTGAATAACGGGAAGCTCATGCG
Found at i:23425661 original size:16 final size:16
Alignment explanation
Indices: 23425640--23425670 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23425630 TCCCAACCCC
*
23425640 ATGCAGTATGTCATGT
1 ATGCAGTATGCCATGT
23425656 ATGCAGTATGCCATG
1 ATGCAGTATGCCATG
23425671 CTCAAAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (16 bp):
ATGCAGTATGCCATGT
Found at i:23433282 original size:22 final size:22
Alignment explanation
Indices: 23433254--23433305 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
23433244 AAGTATTTTA
23433254 AAAGACA-TGATGCAAAAATATT
1 AAAGACATTG-TGCAAAAATATT
*
23433276 AAAGACATTGTTCAAAAATATT
1 AAAGACATTGTGCAAAAATATT
23433298 AAATGACA
1 AAA-GACA
23433306 ATATTAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 21 0.78
23 6 0.22
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.25
Consensus pattern (22 bp):
AAAGACATTGTGCAAAAATATT
Found at i:23433334 original size:16 final size:16
Alignment explanation
Indices: 23433313--23433356 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
23433303 ACAATATTAA
23433313 GAATTTTTAGATAATT
1 GAATTTTTAGATAATT
*
23433329 GAATTTTTAAATAATT
1 GAATTTTTAGATAATT
*
23433345 GAAATTTTAGAT
1 GAATTTTTAGAT
23433357 GTTTTTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (16 bp):
GAATTTTTAGATAATT
Found at i:23435545 original size:26 final size:23
Alignment explanation
Indices: 23435509--23435557 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 23
23435499 GACATTGCTA
*
23435509 TATATGTTTGATTAGTCTGATATATG
1 TATATATTTGA-TA-TCTG-TATATG
23435535 TATATATTTGATATCTGTATATG
1 TATATATTTGATATCTGTATATG
23435558 AGCATGTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 6 0.27
24 4 0.18
25 2 0.09
26 10 0.45
ACGTcount: A:0.29, C:0.04, G:0.16, T:0.51
Consensus pattern (23 bp):
TATATATTTGATATCTGTATATG
Found at i:23447720 original size:15 final size:15
Alignment explanation
Indices: 23447702--23447732 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23447692 GTAAAAACTG
23447702 AAAACAATTAAATAA
1 AAAACAATTAAATAA
*
23447717 AAAACAGTTAAATAA
1 AAAACAATTAAATAA
23447732 A
1 A
23447733 TCTGAAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAACAATTAAATAA
Found at i:23451924 original size:3 final size:3
Alignment explanation
Indices: 23451918--23451951 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
23451908 GTTACTTTTG
23451918 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
23451952 ACCTATACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:23452031 original size:42 final size:41
Alignment explanation
Indices: 23451984--23452091 Score: 110
Period size: 42 Copynumber: 2.6 Consensus size: 41
23451974 ATGTATGTTA
*
23451984 ATACATATATATATGTATATATTT-AAATGTTTTTAAATACAT
1 ATACATATATATAT-TATATATTTAAAACG-TTTTAAATACAT
* * * *
23452026 ATACATATATATATTTGTTTTTTTAAAACGTTTTAAATATAT
1 ATACATATATATA-TTATATATTTAAAACGTTTTAAATACAT
* *
23452068 ATACTATATACATATCATATATTT
1 ATAC-ATATATATATTATATATTT
23452092 TATTACTTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
42 40 0.75
43 13 0.25
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.49
Consensus pattern (41 bp):
ATACATATATATATTATATATTTAAAACGTTTTAAATACAT
Found at i:23460913 original size:24 final size:24
Alignment explanation
Indices: 23460884--23460931 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
23460874 TTTCTAGAAG
* *
23460884 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
23460908 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
23460932 GGTTGACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:23461054 original size:24 final size:23
Alignment explanation
Indices: 23461026--23461071 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
23461016 TTTGGAGAAT
*
23461026 TTTGTGTTTATGTTTTGAGGGTTA
1 TTTGTGTTTAGGTTTTG-GGGTTA
* *
23461050 TTTGTTTTTGGGTTTTGGGGTT
1 TTTGTGTTTAGGTTTTGGGGTT
23461072 TAATTTTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.07, C:0.00, G:0.33, T:0.61
Consensus pattern (23 bp):
TTTGTGTTTAGGTTTTGGGGTTA
Found at i:23464425 original size:15 final size:15
Alignment explanation
Indices: 23464401--23464458 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
23464391 TCTTAACCTA
23464401 AATT-TTTTAATTTT
1 AATTATTTTAATTTT
23464415 AATTATTTTAATATTT
1 AATTATTTTAAT-TTT
* * *
23464431 ATTTA-ATTAATTCCT
1 AATTATTTTAATT-TT
23464446 AATTATTTTAATT
1 AATTATTTTAATT
23464459 ACCTAACCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 5 0.14
15 17 0.49
16 13 0.37
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
AATTATTTTAATTTT
Found at i:23465975 original size:23 final size:24
Alignment explanation
Indices: 23465949--23466015 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
23465939 AGATGACTTT
*
23465949 ATATAAAATTTTAATAAATA-AAA
1 ATATAAAATATTAATAAATATAAA
*
23465972 ATATATAAA-ATTATTAAATATAAA
1 ATATA-AAATATTAATAAATATAAA
*
23465996 AT-TAAAATAAT-ATAAATATA
1 ATATAAAATATTAATAAATATA
23466016 TATTTTGATT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
22 11 0.30
23 18 0.49
24 8 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
ATATAAAATATTAATAAATATAAA
Found at i:23465976 original size:25 final size:25
Alignment explanation
Indices: 23465948--23465996 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
23465938 AAGATGACTT
23465948 TATATAAAATT-TTAATAAATAAAAA
1 TATATAAAATTATTAA-AAATAAAAA
*
23465973 TATATAAAATTATTAAATATAAAA
1 TATATAAAATTATTAAAAATAAAA
23465997 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
TATATAAAATTATTAAAAATAAAAA
Found at i:23466012 original size:15 final size:14
Alignment explanation
Indices: 23465962--23466012 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
23465952 TAAAATTTTA
*
23465962 ATAAATAAAAATAT
1 ATAAATTAAAATAT
23465976 ATAAAATTATTAAATAT
1 AT-AAATTA--AAATAT
23465993 A-AAATTAAAATAAT
1 ATAAATTAAAAT-AT
23466007 ATAAAT
1 ATAAAT
23466013 ATATATTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
13 4 0.13
14 5 0.16
15 15 0.48
17 7 0.23
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAAATTAAAATAT
Found at i:23479138 original size:23 final size:23
Alignment explanation
Indices: 23479103--23479172 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
23479093 TACGAGTAGG
* *
23479103 ATCTAAATCTGTATCTGTTATGC
1 ATCTGAATATGTATCTGTTATGC
* *
23479126 ATCTGAATTTGTATCT-ATATGC
1 ATCTGAATATGTATCTGTTATGC
23479148 ATCTGAAATATGTATCTGTTATGC
1 ATCTG-AATATGTATCTGTTATGC
23479172 A
1 A
23479173 CTTGTGTCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
22 10 0.25
23 24 0.60
24 6 0.15
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (23 bp):
ATCTGAATATGTATCTGTTATGC
Found at i:23483687 original size:151 final size:152
Alignment explanation
Indices: 23483522--23483820 Score: 456
Period size: 152 Copynumber: 2.0 Consensus size: 152
23483512 AGTAATGCAT
* * * *
23483522 TATATATTAATGTTTAGTATTATACTAGTTGAAATAT-CTCTAAGTTCCTATCTTTTTCGTACAT
1 TATATACTAATGTTTAGTATTATACTAGTTGAAATATGCTCTAAGTCCCTATATTTTTCATACAT
* * * * *
23483586 TTGAAAGTTAGCCGTCATACTATATTATATAATGTTATATCATGTCATGTATTAATAATATTTAT
66 TTAAAAGTTAGCCCTCATACTATATTATATAATGTTATATCATATCATATATCAATAATATTTAT
*
23483651 ATATGCACAAATTATTAATTAG
131 ATATGCACAAATGATTAATTAG
* *
23483673 TATATACTATTGTTTATTATTATACTAGTTGAAATATGCTCTAAGTCCCTATATTTTTCATACAT
1 TATATACTAATGTTTAGTATTATACTAGTTGAAATATGCTCTAAGTCCCTATATTTTTCATACAT
* *
23483738 TTAAAAGTTAGCCCTCCTACTATATTATATAATGTTATATCATATCATATATCAATAATTTTTAT
66 TTAAAAGTTAGCCCTCATACTATATTATATAATGTTATATCATATCATATATCAATAATATTTAT
*
23483803 ATATGCATAAATGATTAA
131 ATATGCACAAATGATTAA
23483821 ACATTATAAT
Statistics
Matches: 132, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
151 34 0.26
152 98 0.74
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (152 bp):
TATATACTAATGTTTAGTATTATACTAGTTGAAATATGCTCTAAGTCCCTATATTTTTCATACAT
TTAAAAGTTAGCCCTCATACTATATTATATAATGTTATATCATATCATATATCAATAATATTTAT
ATATGCACAAATGATTAATTAG
Found at i:23484155 original size:30 final size:27
Alignment explanation
Indices: 23484112--23484176 Score: 94
Period size: 30 Copynumber: 2.3 Consensus size: 27
23484102 ATTATAATCT
23484112 ATATTATTATAATAGTTATATATGTATTA
1 ATATTATTATAATAGTTATATAT-TA-TA
*
23484141 ATATTTTTAGTAATAGTTATATATTATA
1 ATATTATTA-TAATAGTTATATATTATA
23484169 ATATTATT
1 ATATTATT
23484177 TTATTTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 9 0.27
29 10 0.30
30 14 0.42
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (27 bp):
ATATTATTATAATAGTTATATATTATA
Found at i:23484179 original size:30 final size:29
Alignment explanation
Indices: 23484101--23484180 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 29
23484091 ATATTTTTTT
*
23484101 TATTATAATCTATATTATTATAATAGTTATA
1 TATTATAATAT-TATT-TTATAATAGTTATA
23484132 TATGTATTAATA-T-TTTTAGTAATAGTTATA
1 TAT-TA-TAATATTATTTTA-TAATAGTTATA
23484162 TATTATAATATTATTTTAT
1 TATTATAATATTATTTTAT
23484181 TTATTAGTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
28 5 0.12
29 7 0.16
30 21 0.49
31 4 0.09
32 2 0.05
33 4 0.09
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.55
Consensus pattern (29 bp):
TATTATAATATTATTTTATAATAGTTATA
Found at i:23485164 original size:49 final size:49
Alignment explanation
Indices: 23485091--23485186 Score: 120
Period size: 49 Copynumber: 2.0 Consensus size: 49
23485081 CTAAATAATT
* * * *
23485091 ACAAAGCGTAGAATAAAACTATTACGATACAAATAGACTAAAAATTAGA
1 ACAAAGCGTAGAATAAAACAATTACAACAAAAATAGACTAAAAATTAGA
* * * *
23485140 ACAAAGTGTAGGATTAAACAATTACAACAAAAATAGACTAAGAATTA
1 ACAAAGCGTAGAATAAAACAATTACAACAAAAATAGACTAAAAATTA
23485187 AAATAAATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.55, C:0.11, G:0.12, T:0.21
Consensus pattern (49 bp):
ACAAAGCGTAGAATAAAACAATTACAACAAAAATAGACTAAAAATTAGA
Found at i:23485824 original size:53 final size:53
Alignment explanation
Indices: 23485713--23485836 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 53
23485703 GCCACACAAT
*
23485713 CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGATGGACACACAGG
1 CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGAGGGACACACAGG
* *
23485766 CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGAGGGCCACACGGG
1 CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGAGGGACACACAGG
* * *
23485819 TGTGTGGTAGACCATGTG
1 CGTGTGCTAGGCCATGTG
23485837 GACCACATGG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 65 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (53 bp):
CGTGTGCTAGGCCATGTGACAAATCGTGTGTGATATTAAGAGGGACACACAGG
Found at i:23486125 original size:16 final size:16
Alignment explanation
Indices: 23486104--23486134 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23486094 TACGCATATC
*
23486104 TGATATCTGTTAAATT
1 TGATATCTATTAAATT
23486120 TGATATCTATTAAAT
1 TGATATCTATTAAAT
23486135 CTGCATCAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TGATATCTATTAAATT
Found at i:23487028 original size:13 final size:13
Alignment explanation
Indices: 23487010--23487035 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23487000 AGTTTTTTTC
23487010 TATTTTTAATTAA
1 TATTTTTAATTAA
23487023 TATTTTTAATTAA
1 TATTTTTAATTAA
23487036 GAAATATACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTTTTAATTAA
Found at i:23487505 original size:26 final size:25
Alignment explanation
Indices: 23487454--23487505 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
23487444 ATTAATTTCA
*
23487454 AATATTTTTAATATAATGATATATAT
1 AATATTTTTAATATAAT-ATACATAT
23487480 AATATTTTTATTATATAAT-TACATAT
1 AATATTTTTA--ATATAATATACATAT
23487506 TTATTATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 16 0.70
28 7 0.30
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (25 bp):
AATATTTTTAATATAATATACATAT
Found at i:23487505 original size:28 final size:26
Alignment explanation
Indices: 23487454--23487514 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
23487444 ATTAATTTCA
*
23487454 AATATTTTTAATATAATGATATATAT
1 AATATTTTTAATATAATGACATATAT
* *
23487480 AATATTTTTATTATATAATTACATATTT
1 AATATTTTTA--ATATAATGACATATAT
*
23487508 ATTATTT
1 AATATTT
23487515 GATTTTATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 10 0.34
28 19 0.66
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (26 bp):
AATATTTTTAATATAATGACATATAT
Found at i:23489503 original size:15 final size:15
Alignment explanation
Indices: 23489485--23489600 Score: 79
Period size: 15 Copynumber: 7.3 Consensus size: 15
23489475 GAAGGAGCCA
23489485 AAGAAGGAAGAACCC
1 AAGAAGGAAGAACCC
* * *
23489500 AAGAAAGAGGAGGAGCCA
1 AAG--A-AGGAAGAACCC
*
23489518 AAGAAAGAAGAACCC
1 AAGAAGGAAGAACCC
**
23489533 AAGAAGGAAGAAGAGCAG
1 AAGAAGGAAG-A-A-CCC
* * *
23489551 AAGAAAGAAGAGCCT
1 AAGAAGGAAGAACCC
*
23489566 AAGAAGGAAGAACCA
1 AAGAAGGAAGAACCC
*
23489581 AAAAAGGAAGAACCC
1 AAGAAGGAAGAACCC
23489596 AAGAA
1 AAGAA
23489601 AGAGGAAGAG
Statistics
Matches: 75, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
15 49 0.65
16 2 0.03
17 3 0.04
18 21 0.28
ACGTcount: A:0.57, C:0.14, G:0.28, T:0.01
Consensus pattern (15 bp):
AAGAAGGAAGAACCC
Found at i:23489516 original size:33 final size:33
Alignment explanation
Indices: 23489479--23489624 Score: 149
Period size: 33 Copynumber: 4.5 Consensus size: 33
23489469 ACAGAAGAAG
*
23489479 GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAG
1 GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAA
* * *
23489512 GAGCCAAAGAAAGAAGAACCCAAGAAGGAAGAA
1 GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAA
* * *
23489545 GAG-CAGAAGAAAGAAGAGCCTAAG--A-AGGAA
1 GAGCCA-AAGAAGGAAGAACCCAAGAAAGAGGAA
* *
23489575 GAACCAAAAAAGGAAGAACCCAAGAAAGAGGAA
1 GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAA
*
23489608 GAG-AAGAAGAAGGAAGA
1 GAGCCA-AAGAAGGAAGA
23489625 GGAGAAAAGG
Statistics
Matches: 91, Mismatches: 16, Indels: 12
0.76 0.13 0.10
Matches are distributed among these distances:
30 20 0.22
31 2 0.02
32 4 0.04
33 65 0.71
ACGTcount: A:0.56, C:0.12, G:0.31, T:0.01
Consensus pattern (33 bp):
GAGCCAAAGAAGGAAGAACCCAAGAAAGAGGAA
Found at i:23489543 original size:18 final size:18
Alignment explanation
Indices: 23489522--23489577 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
23489512 GAGCCAAAGA
23489522 AAGAAGAACCCAAGAAGG
1 AAGAAGAACCCAAGAAGG
* *
23489540 AAGAAG-A-GC-AGAAGA
1 AAGAAGAACCCAAGAAGG
* *
23489555 AAGAAGAGCCTAAGAAGG
1 AAGAAGAACCCAAGAAGG
23489573 AAGAA
1 AAGAA
23489578 CCAAAAAAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 11 0.38
16 1 0.03
17 1 0.03
18 16 0.55
ACGTcount: A:0.57, C:0.11, G:0.30, T:0.02
Consensus pattern (18 bp):
AAGAAGAACCCAAGAAGG
Found at i:23489609 original size:48 final size:48
Alignment explanation
Indices: 23489462--23489624 Score: 163
Period size: 48 Copynumber: 3.4 Consensus size: 48
23489452 GGGCCAGCAA
* *
23489462 AAGAGCCACAGAA-GAAGGAGCCAAAGAAGGAAGAACCCAAGAAAGAGG
1 AAGAGCCAAAGAAGGAA-GAACCAAAGAAGGAAGAACCCAAGAAAGAGG
* * * ** *
23489510 AGGAGCCAAAGAAAGAAGAACCCAAGAAGGAAGAAGAGC-AG-AAGAAAG
1 AAGAGCCAAAGAAGGAAGAACCAAAGAAGGAAGAA-CCCAAGAAAG-AGG
* *
23489558 AAGAGCCTAAGAAGGAAGAACCAAAAAAGGAAGAACCCAAGAAAGAGG
1 AAGAGCCAAAGAAGGAAGAACCAAAGAAGGAAGAACCCAAGAAAGAGG
*
23489606 AAGAG-AAGAAGAAGGAAGA
1 AAGAGCCA-AAGAAGGAAGA
23489625 GGAGAAAAGG
Statistics
Matches: 92, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
47 4 0.04
48 81 0.88
49 7 0.08
ACGTcount: A:0.56, C:0.13, G:0.31, T:0.01
Consensus pattern (48 bp):
AAGAGCCAAAGAAGGAAGAACCAAAGAAGGAAGAACCCAAGAAAGAGG
Found at i:23489621 original size:15 final size:14
Alignment explanation
Indices: 23489596--23489634 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
23489586 GGAAGAACCC
23489596 AAGAAAGAGGAAGAG
1 AAGAAA-AGGAAGAG
23489611 AAGAAGAAGGAAGAG
1 AAGAA-AAGGAAGAG
*
23489626 GAGAAAAGG
1 AAGAAAAGG
23489635 CCACTGCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 4 0.18
15 17 0.77
16 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (14 bp):
AAGAAAAGGAAGAG
Found at i:23492863 original size:19 final size:19
Alignment explanation
Indices: 23492839--23492930 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
23492829 AATCTTCAAG
23492839 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
23492858 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
23492877 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
23492896 GATATGTAATCTTAGTTAT
1 GATATGCAATCTTAGATAT
23492915 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
23492931 AGATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:23492883 original size:38 final size:38
Alignment explanation
Indices: 23492839--23492937 Score: 175
Period size: 38 Copynumber: 2.7 Consensus size: 38
23492829 AATCTTCAAG
23492839 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
23492877 GATATGCAATCTTAGATATGATATGTAATCTTAGTTAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
23492915 GATATGCAATCTTAGA-A-GATATG
1 GATATGCAATCTTAGATATGATATG
23492938 ATTTTGTCAT
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
36 6 0.10
37 1 0.02
38 53 0.88
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:23498180 original size:6 final size:6
Alignment explanation
Indices: 23498164--23498214 Score: 68
Period size: 6 Copynumber: 8.3 Consensus size: 6
23498154 TGATGATGGA
*
23498164 AAAAAG GAAAAG AAAAAG -AAAAG AAAAAG AAAAAG AAAGAAG AAAGAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA-AAG AAA-AAG
23498213 AA
1 AA
23498215 GAGGAAAAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
5 5 0.12
6 24 0.59
7 12 0.29
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:23498185 original size:17 final size:17
Alignment explanation
Indices: 23498165--23498225 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 17
23498155 GATGATGGAA
23498165 AAAAGGAAAAGAAAAAG
1 AAAAGGAAAAGAAAAAG
*
23498182 AAAAGAAAAAGAAAAAG
1 AAAAGGAAAAGAAAAAG
23498199 -AAA-G--AAGAAAGAAG
1 AAAAGGAAAAGAAA-AAG
*
23498213 AAGAGGAAAAGAA
1 AAAAGGAAAAGAA
23498226 GAGGCCAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
13 6 0.17
14 3 0.08
15 2 0.06
16 4 0.11
17 16 0.44
18 5 0.14
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (17 bp):
AAAAGGAAAAGAAAAAG
Found at i:23498252 original size:35 final size:35
Alignment explanation
Indices: 23498210--23498280 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
23498200 AAGAAGAAAG
23498210 AAGAAGAGGAAAAGAAGAGGCCAAGGCGAAAACCT
1 AAGAAGAGGAAAAGAAGAGGCCAAGGCGAAAACCT
23498245 AAGAAGAGGAAAAGAAGAGGCCAAGGCGAAAACCT
1 AAGAAGAGGAAAAGAAGAGGCCAAGGCGAAAACCT
23498280 A
1 A
23498281 CAAAGGGCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.52, C:0.14, G:0.31, T:0.03
Consensus pattern (35 bp):
AAGAAGAGGAAAAGAAGAGGCCAAGGCGAAAACCT
Found at i:23499552 original size:44 final size:44
Alignment explanation
Indices: 23499504--23499797 Score: 419
Period size: 44 Copynumber: 6.7 Consensus size: 44
23499494 ACAAAATTTT
* * *
23499504 TCTCCTTGGTCAGCAGTGGAATATGTTGAAAATTGTAAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* * *
23499548 TCTCCCTGGTCAGCAGTGGAATAGGCTGAAGAGTGTAAGTCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* * * *
23499592 TTTTCCTGGTCAGCAGTGGAATAGGTTGAAGATTATGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
23499636 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* * *
23499680 TCTCTCTGGTCAGCAATGGAATAGGTTGAAGATTGTAAGTCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* *
23499724 TCTCCCTGGTCAGCAGTGAAATAGGTTGAAGATTGTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
* *
23499768 TCTCCCTGAG-CAACAGTGGAGTAGGTTGAA
1 TCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
23499798 AGTAGCAGAT
Statistics
Matches: 221, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
44 220 1.00
45 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (44 bp):
TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAATCCTA
Found at i:23499919 original size:50 final size:50
Alignment explanation
Indices: 23499851--23499968 Score: 112
Period size: 50 Copynumber: 2.4 Consensus size: 50
23499841 AATACATCAG
* * * * *
23499851 TCTTATCGCCTTGACGTTGCA-CTGGAAAAGATTGAAGTCACAATGGCAAA
1 TCTTATCTCCCTGGCGTTGCAGC-GGAAAAGATTGAAGCCACAACGGCAAA
* * ** * **
23499901 TCTTATTTCCCTGGCGTTGTAGCGGAGCAGATTGAAGCCACGACGGTGAA
1 TCTTATCTCCCTGGCGTTGCAGCGGAAAAGATTGAAGCCACAACGGCAAA
23499951 TCTTATCTCCCTGGCGTT
1 TCTTATCTCCCTGGCGTT
23499969 AAGGCTTGGA
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
50 53 0.98
51 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (50 bp):
TCTTATCTCCCTGGCGTTGCAGCGGAAAAGATTGAAGCCACAACGGCAAA
Found at i:23500269 original size:44 final size:44
Alignment explanation
Indices: 23500161--23500271 Score: 145
Period size: 44 Copynumber: 2.5 Consensus size: 44
23500151 AAAGATGACG
* *
23500161 AATCTTATCTC-CATGAAGTTACAATGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCTC-TGAAGTTGCAATGGAGCAGATTAAAACCAAT
* * *
23500205 AATCCTATCTCTCTGAAGTTGCAATGGAGCGGATTAAAATCACAT
1 AATCTTATCTCTCTGAAGTTGCAATGGAGCAGATTAAAACCA-AT
23500250 -ATCTTATCTCTCTGAAGTTGCA
1 AATCTTATCTCTCTGAAGTTGCA
23500272 GAGAACAGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
44 56 0.95
45 3 0.05
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAATGGAGCAGATTAAAACCAAT
Found at i:23500630 original size:45 final size:45
Alignment explanation
Indices: 23500510--23500630 Score: 163
Period size: 45 Copynumber: 2.7 Consensus size: 45
23500500 GTATCGGGTT
* *
23500510 TTATCTCCCT-AAAGTTGCAGTGGAGCAGACCCAAGAAAGCGAGTC
1 TTATCTCCCTGAAA-TTGCAGTGGAGCAGACTCAAGAAAGCAAGTC
* *
23500555 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAATCAAGTC
1 TTATCTCCCTGAAATTGCAGTGGAGCAGACTCAAGAAAGCAAGTC
* * *
23500600 TTATCCCCCTGAAATTACAGTGGGGCAGACT
1 TTATCTCCCTGAAATTGCAGTGGAGCAGACT
23500631 AAATAAACAA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 65 0.97
46 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (45 bp):
TTATCTCCCTGAAATTGCAGTGGAGCAGACTCAAGAAAGCAAGTC
Found at i:23501208 original size:19 final size:19
Alignment explanation
Indices: 23501179--23501232 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
23501169 AATCTTCAAG
23501179 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
23501198 GTTATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
23501217 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
23501233 AGATATGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:23503627 original size:29 final size:29
Alignment explanation
Indices: 23503536--23503614 Score: 140
Period size: 29 Copynumber: 2.7 Consensus size: 29
23503526 TTTGATATCT
23503536 AAAATAAAAAAAACTAAATTCCTGAAAATA
1 AAAAT-AAAAAAACTAAATTCCTGAAAATA
*
23503566 AAAATAAAAAAATTAAATTCCTGAAAATA
1 AAAATAAAAAAACTAAATTCCTGAAAATA
23503595 AAAATAAAAAAACTAAATTC
1 AAAATAAAAAAACTAAATTC
23503615 TAAATGTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 42 0.89
30 5 0.11
ACGTcount: A:0.67, C:0.09, G:0.03, T:0.22
Consensus pattern (29 bp):
AAAATAAAAAAACTAAATTCCTGAAAATA
Found at i:23507839 original size:50 final size:50
Alignment explanation
Indices: 23507764--23507894 Score: 199
Period size: 50 Copynumber: 2.6 Consensus size: 50
23507754 CATTTGGGTA
* *
23507764 AAGAGGTCCCATGTAAGACCATGTCTGGTACATGGCGTTGGCACCGAGAT
1 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
*
23507814 AAGAGGTCTCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** *
23507864 GAGAACTCTCATGTAAGACCATATCTGGGAC
1 AAGAGGTCTCATGTAAGACCATGTCTGGGAC
23507895 CATGTAAGAC
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 73 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:23507901 original size:22 final size:22
Alignment explanation
Indices: 23507873--23507916 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
23507863 TGAGAACTCT
23507873 CATGTAAGACCATATCTGGGAC
1 CATGTAAGACCATATCTGGGAC
* *
23507895 CATGTAAGACCATGTTTGGGAC
1 CATGTAAGACCATATCTGGGAC
23507917 ATGGCTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (22 bp):
CATGTAAGACCATATCTGGGAC
Found at i:23512877 original size:26 final size:26
Alignment explanation
Indices: 23512848--23512949 Score: 141
Period size: 26 Copynumber: 3.9 Consensus size: 26
23512838 CACCAATATT
*
23512848 GCAGTAAAGCTGCCAGTAATAGTAAC
1 GCAGTAAAGCTGCCAGTAACAGTAAC
* * *
23512874 GCAGCAAAGTTGCTAGTAACAGTAAC
1 GCAGTAAAGCTGCCAGTAACAGTAAC
* * *
23512900 GCAGTAGAGCTGCCATTATCAGTAAC
1 GCAGTAAAGCTGCCAGTAACAGTAAC
23512926 GCAGTAAAGCTGCCAGTAACAGTA
1 GCAGTAAAGCTGCCAGTAACAGTA
23512950 TTTGTGGTAA
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
GCAGTAAAGCTGCCAGTAACAGTAAC
Found at i:23513114 original size:27 final size:27
Alignment explanation
Indices: 23513088--23513420 Score: 180
Period size: 27 Copynumber: 12.3 Consensus size: 27
23513078 AGAACAAGTC
* *
23513088 ATTTTA-CCTTATAGGGTTATTTTAGTC
1 ATTTTACCCTT-TAGGGGTATTTTAGTA
* *
23513115 ATTTTACCCTTTGGGGGTATTTTGGTA
1 ATTTTACCCTTTAGGGGTATTTTAGTA
* *
23513142 ATTTTACCCTTTAGGGGTATGTTGGTA
1 ATTTTACCCTTTAGGGGTATTTTAGTA
* *
23513169 ATTTTACCCTAT-GAGGGTA-TTTCGATA
1 ATTTTACCCTTTAG-GGGTATTTTAG-TA
* * * *
23513196 ATTTTA-CCTATCAAGGGTATTTCAATA
1 ATTTTACCCT-TTAGGGGTATTTTAGTA
* * *
23513223 ATTTTA-CCTGTCAAGGGTATTTGA-TA
1 ATTTTACCCT-TTAGGGGTATTTTAGTA
* **
23513249 ATTTTA-CCTTTTGAGGGTATTTCGGTA
1 ATTTTACCCTTTAG-GGGTATTTTAGTA
* * *
23513276 ATTTTACCCTATAAGGGTA-TTTCGATA
1 ATTTTACCCTTTAGGGGTATTTTAG-TA
* * **
23513303 ATTTTACCC-GTCGAGGGTATTTCGGTA
1 ATTTTACCCTTTAG-GGGTATTTTAGTA
* * * *
23513330 ATTTTACCCTTCAAGGGTATTTCGATTA
1 ATTTTACCCTTTAGGGGTATTT-TAGTA
* * * *
23513358 ACTTTACCCTATAAGGGTATTTCAGTA
1 ATTTTACCCTTTAGGGGTATTTTAGTA
* * * * *
23513385 ATTTTACCCATCAAGAGTATTTCAGTA
1 ATTTTACCCTTTAGGGGTATTTTAGTA
23513412 ATTTTACCC
1 ATTTTACCC
23513421 ATCGATGGTA
Statistics
Matches: 243, Mismatches: 49, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
25 1 0.00
26 30 0.12
27 178 0.73
28 34 0.14
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTTAGGGGTATTTTAGTA
Found at i:23513157 original size:54 final size:55
Alignment explanation
Indices: 23513088--23513420 Score: 232
Period size: 54 Copynumber: 6.2 Consensus size: 55
23513078 AGAACAAGTC
* * * * * * *
23513088 ATTTTA-CCTTATAGGGTTATTTTAGTCATTTTACCCTTTGGGGGTATTTTGGTA
1 ATTTTACCCTTATAGGGGTATGTTAGTAATTTTACCCTATGAGGGTATTTCGATA
*
23513142 ATTTTACCCTT-TAGGGGTATGTTGGTAATTTTACCCTATGAGGGTATTTCGATA
1 ATTTTACCCTTATAGGGGTATGTTAGTAATTTTACCCTATGAGGGTATTTCGATA
* * * *
23513196 ATTTTA-CC-TATCAAGGGTAT-TTCAATAATTTTA-CCTGTCAAGGGTATTT-GATA
1 ATTTTACCCTTAT-AGGGGTATGTT-AGTAATTTTACCCTAT-GAGGGTATTTCGATA
* * *
23513249 ATTTTA-CCTT-TTGAGGGTAT-TTCGGTAATTTTACCCTATAAGGGTATTTCGATA
1 ATTTTACCCTTATAG-GGGTATGTT-AGTAATTTTACCCTATGAGGGTATTTCGATA
* ** * *
23513303 ATTTTACCCGTCGA-GGGTAT-TTCGGTAATTTTACCCT-TCAAGGGTATTTCGATTA
1 ATTTTACCCTTATAGGGGTATGTT-AGTAATTTTACCCTAT-GAGGGTATTTCGA-TA
* * * *
23513358 ACTTTACCC-TATAAGGGTAT-TTCAGTAATTTTACCC-ATCAAGAGTATTTC-AGTA
1 ATTTTACCCTTATAGGGGTATGTT-AGTAATTTTACCCTAT-GAGGGTATTTCGA-TA
23513412 ATTTTACCC
1 ATTTTACCC
23513421 ATCGATGGTA
Statistics
Matches: 236, Mismatches: 28, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
52 1 0.00
53 50 0.21
54 135 0.57
55 50 0.21
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.43
Consensus pattern (55 bp):
ATTTTACCCTTATAGGGGTATGTTAGTAATTTTACCCTATGAGGGTATTTCGATA
Found at i:23513285 original size:107 final size:106
Alignment explanation
Indices: 23513115--23513434 Score: 378
Period size: 107 Copynumber: 3.0 Consensus size: 106
23513105 TATTTTAGTC
*** *
23513115 ATTTTACCCTTTGGGGGTATTTTGGTAATTTTACCCTTTAGGGGTATGTT-GGTAATTTTACCCT
1 ATTTTACCCTTCAAGGGTA-TTTGATAATTTTACCCTTTA-GGGTAT-TTCGGTAATTTTACCCT
* * *
23513179 ATGAGGGTATTTCGATAATTTTACCTATCAAGGGTATTTCAATA
63 ATAAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAATA
*
23513223 ATTTTA-CCTGTCAAGGGTATTTGATAATTTTACCTTTTGAGGGTATTTCGGTAATTTTACCCTA
1 ATTTTACCCT-TCAAGGGTATTTGATAATTTTACCCTTT-AGGGTATTTCGGTAATTTTACCCTA
* **
23513287 TAAGGGTATTTCGATAATTTTACCCGTCGAGGGTATTTCGGTA
64 TAAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAATA
* * *
23513330 ATTTTACCCTTCAAGGGTATTTCGATTAACTTTACCCTATAAGGGTATTTCAGTAATTTTACCC-
1 ATTTTACCCTTCAAGGGTATTT-GA-TAATTTTACCCT-TTAGGGTATTTCGGTAATTTTACCCT
* *
23513394 ATCAAGAGTATTTC-AGTAATTTTACCCATCGATGGTATTTC
63 AT-AAGGGTATTTCGA-TAATTTTACCCATCGAGGGTATTTC
23513435 GGTCACTTTA
Statistics
Matches: 185, Mismatches: 18, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
106 2 0.01
107 96 0.52
108 21 0.11
109 65 0.35
110 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (106 bp):
ATTTTACCCTTCAAGGGTATTTGATAATTTTACCCTTTAGGGTATTTCGGTAATTTTACCCTATA
AGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCAATA
Found at i:23513444 original size:27 final size:27
Alignment explanation
Indices: 23513129--23513446 Score: 295
Period size: 27 Copynumber: 11.8 Consensus size: 27
23513119 TACCCTTTGG
* * * *
23513129 GGGTATTTTGGTAATTTTACCCTTTAG
1 GGGTATTTCGGTAATTTTACCCATCAA
*
23513156 GGGTATGTT-GGTAATTTTACCCTAT-GA
1 GGGTAT-TTCGGTAATTTTACCC-ATCAA
* *
23513183 GGGTATTTCGATAATTTTACCTATCAA
1 GGGTATTTCGGTAATTTTACCCATCAA
** **
23513210 GGGTATTTCAATAATTTTACCTGTCAA
1 GGGTATTTCGGTAATTTTACCCATCAA
* ** **
23513237 GGGTATTT-GATAATTTTACCTTTTGA
1 GGGTATTTCGGTAATTTTACCCATCAA
23513263 GGGTATTTCGGTAATTTTACCCTAT-AA
1 GGGTATTTCGGTAATTTTACCC-ATCAA
* * *
23513290 GGGTATTTCGATAATTTTACCCGTCGA
1 GGGTATTTCGGTAATTTTACCCATCAA
*
23513317 GGGTATTTCGGTAATTTTACCCTTCAA
1 GGGTATTTCGGTAATTTTACCCATCAA
* *
23513344 GGGTATTTCGATTAACTTTACCCTAT-AA
1 GGGTATTTCG-GTAATTTTACCC-ATCAA
*
23513372 GGGTATTTCAGTAATTTTACCCATCAA
1 GGGTATTTCGGTAATTTTACCCATCAA
* * *
23513399 GAGTATTTCAGTAATTTTACCCATCGA
1 GGGTATTTCGGTAATTTTACCCATCAA
* * *
23513426 TGGTATTTCGGTCACTTTACC
1 GGGTATTTCGGTAATTTTACC
23513447 ACAATTGACA
Statistics
Matches: 246, Mismatches: 35, Indels: 20
0.82 0.12 0.07
Matches are distributed among these distances:
26 29 0.12
27 191 0.78
28 25 0.10
29 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACCCATCAA
Found at i:23518171 original size:20 final size:21
Alignment explanation
Indices: 23518146--23518186 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
23518136 TTACCGAATT
23518146 CTCTCTTCCCATC-TCTTCTC
1 CTCTCTTCCCATCTTCTTCTC
**
23518166 CTCTCTTTTCATCTTCTTCTC
1 CTCTCTTCCCATCTTCTTCTC
23518187 TTTTTTCTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.05, C:0.44, G:0.00, T:0.51
Consensus pattern (21 bp):
CTCTCTTCCCATCTTCTTCTC
Found at i:23518180 original size:18 final size:18
Alignment explanation
Indices: 23518159--23518193 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23518149 TCTTCCCATC
23518159 TCTTCTCCTCTCTTTTCA
1 TCTTCTCCTCTCTTTTCA
* *
23518177 TCTTCTTCTCTTTTTTC
1 TCTTCTCCTCTCTTTTC
23518194 TGGTGCTACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.63
Consensus pattern (18 bp):
TCTTCTCCTCTCTTTTCA
Found at i:23518902 original size:27 final size:27
Alignment explanation
Indices: 23518859--23519189 Score: 242
Period size: 27 Copynumber: 12.3 Consensus size: 27
23518849 TGCAAATTAT
* *
23518859 GGTAAAATGACCGAAATACCCTCGATG
1 GGTAAAATTATCGAAATACCCTCGATG
* * *
23518886 GGTAAAATTATCAAAATACCCTCTAAG
1 GGTAAAATTATCGAAATACCCTCGATG
* * *
23518913 GGT-AAATTACCGAAGTACCCTCAATG
1 GGTAAAATTATCGAAATACCCTCGATG
* *
23518939 GGTAAAATTATTGAAATACCCTC-ATAA
1 GGTAAAATTATCGAAATACCCTCGAT-G
* *
23518966 GGTAAAGTTATC-AAGATACCCTCGAAG
1 GGTAAAATTATCGAA-ATACCCTCGATG
* *
23518993 GGTAAAATTGTCGAAATACCTTC-ATGG
1 GGTAAAATTATCGAAATACCCTCGAT-G
* * * **
23519020 GGTAAAATTACCGAAATACCTTTGAAA
1 GGTAAAATTATCGAAATACCCTCGATG
* * **
23519047 CGTAAAATTATCGAAATACCCTTGACA
1 GGTAAAATTATCGAAATACCCTCGATG
* * *
23519074 AGTAAAATTACCAAAATACCCTCGATG
1 GGTAAAATTATCGAAATACCCTCGATG
* *
23519101 GGTAAAATTATTGAAATACCC-CTATAG
1 GGTAAAATTATCGAAATACCCTCGAT-G
* * *
23519128 GGTAAAATT-GCTGAAATGCCCTCGAAG
1 GGTAAAATTATC-GAAATACCCTCGATG
* * * * * *
23519155 GGTAAAATGACCAAAATACCCCCAAAG
1 GGTAAAATTATCGAAATACCCTCGATG
23519182 GGTAAAAT
1 GGTAAAAT
23519190 GACTAAAATA
Statistics
Matches: 240, Mismatches: 53, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
26 29 0.12
27 204 0.85
28 7 0.03
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (27 bp):
GGTAAAATTATCGAAATACCCTCGATG
Found at i:23518918 original size:54 final size:55
Alignment explanation
Indices: 23518859--23519189 Score: 313
Period size: 54 Copynumber: 6.1 Consensus size: 55
23518849 TGCAAATTAT
* * *
23518859 GGTAAAATGACCGAAATACCCTCGATGGGTAAAATTATCAAAATACCCTCTA-AG
1 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
* * *
23518913 GGT-AAATTACCGAAGTACCCTC-AATGGGTAAAATTATTGAAATACCCTC-ATAA
1 GGTAAAATTACCGAAATACCCTCGAA-GGGTAAAATTATCGAAATACCCTCTATAG
* * * * *
23518966 GGTAAAGTTATC-AAGATACCCTCGAAGGGTAAAATTGTCGAAATACCTTC-ATGG
1 GGTAAAATTACCGAA-ATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
* * ** *
23519020 GGTAAAATTACCGAAATACCTTTGAAACGTAAAATTATCGAAATACCCT-TGACA-
1 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCT-ATAG
* * * *
23519074 AGTAAAATTACCAAAATACCCTCGATGGGTAAAATTATTGAAATACCC-CTATAG
1 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
* * * * * * * *
23519128 GGTAAAATTGCTGAAATGCCCTCGAAGGGTAAAATGACCAAAATACCC-CCAAAG
1 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
23519182 GGTAAAAT
1 GGTAAAAT
23519190 GACTAAAATA
Statistics
Matches: 222, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
52 2 0.01
53 47 0.21
54 168 0.76
55 5 0.02
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (55 bp):
GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTCTATAG
Found at i:23519190 original size:27 final size:27
Alignment explanation
Indices: 23519075--23519220 Score: 116
Period size: 27 Copynumber: 5.4 Consensus size: 27
23519065 CCCTTGACAA
* * * * *
23519075 GTAAAATTACCAAAATACCCTCGATGG
1 GTAAAATGACTAAAATACCCCCAAAGG
* * * * *
23519102 GTAAAATTATTGAAATACCCCTATAGG
1 GTAAAATGACTAAAATACCCCCAAAGG
* * * *
23519129 GTAAAATTG-CTGAAATGCCCTCGAAGG
1 GTAAAA-TGACTAAAATACCCCCAAAGG
*
23519156 GTAAAATGACCAAAATACCCCCAAAGG
1 GTAAAATGACTAAAATACCCCCAAAGG
*
23519183 GTAAAATGACTAAAATAACCCCATAA-G
1 GTAAAATGACTAAAATACCCCCA-AAGG
23519210 GTAAAATGACT
1 GTAAAATGACT
23519221 GTTGTACCCC
Statistics
Matches: 94, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
26 2 0.02
27 89 0.95
28 3 0.03
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.21
Consensus pattern (27 bp):
GTAAAATGACTAAAATACCCCCAAAGG
Found at i:23519436 original size:26 final size:26
Alignment explanation
Indices: 23519405--23519496 Score: 105
Period size: 26 Copynumber: 3.5 Consensus size: 26
23519395 ACTGCTATTA
* *
23519405 GCAGCTTTGCTTCGTTATTGATACTG
1 GCAGCTTTGCTGCGTTACTGATACTG
* * *
23519431 GCAGCTTTGTTGCGTTACTGTTACTA
1 GCAGCTTTGCTGCGTTACTGATACTG
*
23519457 GTAGCTTTGCTGCGTTACT-ATTACTG
1 GCAGCTTTGCTGCGTTACTGA-TACTG
*
23519483 GTAGCTTTGCTGCG
1 GCAGCTTTGCTGCG
23519497 ATATTGGTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.41
Consensus pattern (26 bp):
GCAGCTTTGCTGCGTTACTGATACTG
Found at i:23519656 original size:28 final size:29
Alignment explanation
Indices: 23519613--23519685 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 29
23519603 GATTATTATT
*
23519613 TTGGGCTAAGGTCCAC-ATTGTTACTGTA
1 TTGGGCTAAGGCCCACAATTGTTACTGTA
23519641 TTGGGCTAAGGCCCACATATTGTTACTGTA
1 TTGGGCTAAGGCCCACA-ATTGTTACTGTA
* *
23519671 TAGGGCTCAGGCCCA
1 TTGGGCTAAGGCCCA
23519686 AACTGATTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.38
30 25 0.62
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (29 bp):
TTGGGCTAAGGCCCACAATTGTTACTGTA
Found at i:23521223 original size:17 final size:17
Alignment explanation
Indices: 23521201--23521242 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
23521191 CATCCAGCTT
23521201 AGATAATTGAGGTAACA
1 AGATAATTGAGGTAACA
23521218 AGATAATTGAGGTAACA
1 AGATAATTGAGGTAACA
23521235 AGATAATT
1 AGATAATT
23521243 TTGTGTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.48, C:0.05, G:0.21, T:0.26
Consensus pattern (17 bp):
AGATAATTGAGGTAACA
Found at i:23521643 original size:136 final size:136
Alignment explanation
Indices: 23521399--23521646 Score: 478
Period size: 136 Copynumber: 1.8 Consensus size: 136
23521389 TTTAGAAGTG
23521399 TAGGTTTAAAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAG
1 TAGGTTTAAAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAG
23521464 TGATTATGAACTTAGATAATATGTTTGTAAAATGTATATGAGGGAAAAACATGTTTGAACATGTT
66 TGATTATGAACTTAGATAATATGTTTGTAAAATGTATATGAGGGAAAAACATGTTTGAACATGTT
23521529 TTTATA
131 TTTATA
23521535 TAGGTTTAAAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAG
1 TAGGTTTAAAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAG
* *
23521600 TGATTATGAACTTAGCTAATATGTTTGTAGAATGTATATGAGGGAAA
66 TGATTATGAACTTAGATAATATGTTTGTAAAATGTATATGAGGGAAA
23521647 TTGAGTAATG
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 110 1.00
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (136 bp):
TAGGTTTAAAATACATTGTTTGGAAGGTGTACAAATGCACTAAAGGTGAAAATGGTTGGAAAGAG
TGATTATGAACTTAGATAATATGTTTGTAAAATGTATATGAGGGAAAAACATGTTTGAACATGTT
TTTATA
Found at i:23525235 original size:36 final size:35
Alignment explanation
Indices: 23525141--23525255 Score: 95
Period size: 36 Copynumber: 3.2 Consensus size: 35
23525131 AGTCTAGCCA
* * * * ** *
23525141 AAACACACCAAATGCTCACACGAGCCAAGCCCTCCA
1 AAACACA-CAAATGCTCAAAAGAGCTAATCCAACCG
* * *
23525177 AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
1 AAACACACAAATGCTCAAAAGAGCTAATCCAACCG
* **
23525212 AAACACACAATATGCTTAAAAGAGCTAATCCCTCCG
1 AAACACACAA-ATGCTCAAAAGAGCTAATCCAACCG
23525248 AAACACAC
1 AAACACAC
23525256 CAAACAGAGA
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
35 28 0.44
36 35 0.56
ACGTcount: A:0.42, C:0.34, G:0.11, T:0.13
Consensus pattern (35 bp):
AAACACACAAATGCTCAAAAGAGCTAATCCAACCG
Found at i:23530405 original size:14 final size:14
Alignment explanation
Indices: 23530386--23530415 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23530376 ATTTAAGTTG
23530386 AATTTTTAAACTTA
1 AATTTTTAAACTTA
*
23530400 AATTTTTAAATTTA
1 AATTTTTAAACTTA
23530414 AA
1 AA
23530416 AGATTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTTTTAAACTTA
Found at i:23535175 original size:17 final size:17
Alignment explanation
Indices: 23535149--23535186 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
23535139 GTAATTCGCG
23535149 TAAATGATCAGA-TCACA
1 TAAATGATCA-ATTCACA
*
23535166 TAAATTATCAATTCACA
1 TAAATGATCAATTCACA
23535183 TAAA
1 TAAA
23535187 ATATATGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (17 bp):
TAAATGATCAATTCACA
Found at i:23543182 original size:45 final size:45
Alignment explanation
Indices: 23543066--23543189 Score: 140
Period size: 45 Copynumber: 2.8 Consensus size: 45
23543056 AGGAAATGAT
* * * * * *
23543066 TAAGACCATAGTTAAAAGATACTATGACACTATATCGGAAATAAA
1 TAAGACCATAGTTGAAAGATACTATGGCACCATACCAGAAACAAA
* *
23543111 TAAGACCATAGTTGAAAGACACTATGGCACCATACCAGAAACAAG
1 TAAGACCATAGTTGAAAGATACTATGGCACCATACCAGAAACAAA
* ** *
23543156 TAAGACCATAGCTGAAAGATGTTATGGCATCATA
1 TAAGACCATAGTTGAAAGATACTATGGCACCATA
23543190 ATTCTAATGA
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGATACTATGGCACCATACCAGAAACAAA
Found at i:23543251 original size:45 final size:45
Alignment explanation
Indices: 23543160--23543266 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
23543150 AACAAGTAAG
* * * * **
23543160 ACCATAGCTGAAAGATGTTATGGCATCATAATTCTAATGAGTAAA
1 ACCATAGCTGAAAGACGTCATGGCATCATAATTCAAACGAACAAA
*
23543205 ACTATAGCTGAAAGACGTCATGGCATCATGAA-TCAAACGAACAAA
1 ACCATAGCTGAAAGACGTCATGGCATCAT-AATTCAAACGAACAAA
*
23543250 ACCATAGTTGAAAGACG
1 ACCATAGCTGAAAGACG
23543267 CTATGGAAAC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 50 0.96
46 2 0.04
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (45 bp):
ACCATAGCTGAAAGACGTCATGGCATCATAATTCAAACGAACAAA
Found at i:23544709 original size:42 final size:42
Alignment explanation
Indices: 23544658--23545110 Score: 526
Period size: 42 Copynumber: 10.9 Consensus size: 42
23544648 GTTTACAAAC
* *
23544658 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
23544700 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
23544742 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG-A
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
23544783 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG-AA
* * * *
23544825 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
23544867 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
* *
23544909 GAAAACGCCGCTAAAG-A-ATGTTCTTTAGCGGCGCTTA-AG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
23544948 GAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* * * ****
23544989 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-CTTAGAA
** * * * ****
23545032 CTAATCGCCGCTAAAGAACATGTTCTTTAGTGGC-ATTTTTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* * *
23545073 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT
23545111 TTATACAAAA
Statistics
Matches: 371, Mismatches: 31, Indels: 18
0.88 0.07 0.04
Matches are distributed among these distances:
39 17 0.05
40 25 0.07
41 128 0.35
42 169 0.46
43 32 0.09
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:23544805 original size:125 final size:126
Alignment explanation
Indices: 23544658--23545110 Score: 551
Period size: 125 Copynumber: 3.6 Consensus size: 126
23544648 GTTTACAAAC
* * *
23544658 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
23544723 TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT-AGA
66 TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAGA
* * * *
23544783 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTAAAAAAATGCCACTAAAGACCATG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG-AAAAAAACGCCGCTAAAGAACATG
* * *
23544847 TTCTTTAGCGGCGCTTAGGAAAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAGG
65 TTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAGA
* **
23544909 GAAAACGCCGCTAAAG-A-ATGTTCTTTAGCGGCGCTTA-AGGAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
** * ****
23544971 TCTTTAGCGGCGCTTA-AGGAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTT
66 TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG-CTTAAGA
** * * * **** * *
23545032 CTAATCGCCGCTAAAGAACATGTTCTTTAGTGGC-ATTTTTTACAAACGCCGCAAAAGAACATGT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
*
23545096 TCTTTAGTGGCGCTT
66 TCTTTAGCGGCGCTT
23545111 TTATACAAAA
Statistics
Matches: 284, Mismatches: 37, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
122 33 0.12
123 51 0.18
124 22 0.08
125 161 0.57
126 17 0.06
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (126 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAAGA
Found at i:23550983 original size:18 final size:18
Alignment explanation
Indices: 23550960--23551292 Score: 93
Period size: 18 Copynumber: 19.5 Consensus size: 18
23550950 AATTGCAATG
23550960 GTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
23550978 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
23550996 GTAAGTTAAATGTAAG-T-T
1 GTAAGTT--ATGTAAGTTAT
*
23551014 GTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAG--TTAT
23551033 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
*
23551051 GT-A-TTGTGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
23551065 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
23551083 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
*
23551099 -TATGTATTATGTAAG-T-T
1 GTAAG--TTATGTAAGTTAT
* *
23551116 GTAAGTTAT-TATGTATTGT
1 GTAAGTTATGTAAG--TTAT
23551135 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
23551153 GT-A-TTATGTAAGTTAAT
1 GTAAGTTATGTAAGTT-AT
23551170 GT-A-TATATGTAAG-T-T
1 GTAAGT-TATGTAAGTTAT
23551185 GTAAGTTAATGT-A-TTAT
1 GTAAGTT-ATGTAAGTTAT
23551202 GTAAG-T-TGTAAGTTACAT
1 GTAAGTTATGTAAGTT--AT
23551220 GT-A-TTATGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
*
23551234 GTAAGTAAATGT-A-TTAT
1 GTAAGT-TATGTAAGTTAT
23551251 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
*
23551267 -TATGTATTATGTAAG-T-T
1 GTAAG--TTATGTAAGTTAT
23551284 GTAAGTTAT
1 GTAAGTTAT
23551293 TATGTATTGT
Statistics
Matches: 244, Mismatches: 12, Indels: 120
0.65 0.03 0.32
Matches are distributed among these distances:
14 15 0.06
15 20 0.08
16 34 0.14
17 44 0.18
18 100 0.41
19 27 0.11
20 4 0.02
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (18 bp):
GTAAGTTATGTAAGTTAT
Found at i:23551008 original size:11 final size:9
Alignment explanation
Indices: 23550960--23551292 Score: 93
Period size: 7 Copynumber: 39.0 Consensus size: 9
23550950 AATTGCAATG
23550960 GTAAGTTAT
1 GTAAGTTAT
23550969 GTAAGTTAT
1 GTAAGTTAT
23550978 GTAAGTTAAAT
1 GTAAGTT--AT
23550989 GT-A-TTAT
1 GTAAGTTAT
23550996 GTAAGTTAAAT
1 GTAAGTT--AT
23551007 GTAAG-T-T
1 GTAAGTTAT
23551014 GTAAGTTAT
1 GTAAGTTAT
*
23551023 -TATGTATTAT
1 GTAAG--TTAT
23551033 GTAAG-T-T
1 GTAAGTTAT
23551040 GTAAGTTAAAT
1 GTAAGTT--AT
*
23551051 GT-A-TTGT
1 GTAAGTTAT
23551058 GTAAG-T-T
1 GTAAGTTAT
23551065 GTAAGTTAAAT
1 GTAAGTT--AT
23551076 GT-A-TTAT
1 GTAAGTTAT
23551083 GTAAG-T-T
1 GTAAGTTAT
23551090 GTAAGTTAT
1 GTAAGTTAT
*
23551099 -TATGTATTAT
1 GTAAG--TTAT
23551109 GTAAG-T-T
1 GTAAGTTAT
23551116 GTAAGTTAT
1 GTAAGTTAT
* *
23551125 -TATGTATTGT
1 GTAAG--TTAT
23551135 GTAAG-T-T
1 GTAAGTTAT
23551142 GTAAGTTAAAT
1 GTAAGTT--AT
23551153 GT-A-TTAT
1 GTAAGTTAT
23551160 GTAAGTTAAT
1 GTAAGTT-AT
23551170 GT-A-TATAT
1 GTAAGT-TAT
23551178 GTAAG-T-T
1 GTAAGTTAT
23551185 GTAAGTTAAT
1 GTAAGTT-AT
23551195 GT-A-TTAT
1 GTAAGTTAT
23551202 GTAAG-T-T
1 GTAAGTTAT
23551209 GTAAGTTACAT
1 GTAAGTT--AT
23551220 GT-A-TTAT
1 GTAAGTTAT
23551227 GTAAG-T-T
1 GTAAGTTAT
*
23551234 GTAAGTAAAT
1 GTAAGT-TAT
23551244 GT-A-TTAT
1 GTAAGTTAT
23551251 GTAAG-T-T
1 GTAAGTTAT
23551258 GTAAGTTAT
1 GTAAGTTAT
*
23551267 -TATGTATTAT
1 GTAAG--TTAT
23551277 GTAAG-T-T
1 GTAAGTTAT
23551284 GTAAGTTAT
1 GTAAGTTAT
23551293 TATGTATTGT
Statistics
Matches: 246, Mismatches: 12, Indels: 132
0.63 0.03 0.34
Matches are distributed among these distances:
7 93 0.38
8 47 0.19
9 40 0.16
10 31 0.13
11 35 0.14
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:23551039 original size:26 final size:26
Alignment explanation
Indices: 23551005--23551435 Score: 395
Period size: 26 Copynumber: 17.6 Consensus size: 26
23550995 TGTAAGTTAA
23551005 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
23551031 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
23551056 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
23551081 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
23551107 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
23551133 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
23551158 ATGTAAG-T-TAA--T-GTA--TA-T
1 ATGTAAGTTGTAAGTTATTATGTATT
23551176 ATGTAAGTTGTAAGTTAATGTAT-TATGT
1 ATGTAAGTTGTAAGTT-AT-TATGTAT-T
* * * * *
23551204 AAGT-TG-T-AAG-TTA-CATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
23551225 ATGTAAGTTGTAAGTAAATGTAT-TATGT
1 ATGTAAGTTGTAAGT-TAT-TATGTAT-T
* * * *
23551253 AAGT-TG-T-AAG-TTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
23551275 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
23551301 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
23551327 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
23551353 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
23551378 ATGTCAG-T-T-A---A--ATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
23551396 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
23551421 ATGTAAGTTGTAAGT
1 ATGTAAGTTGTAAGT
23551436 AATATAATTA
Statistics
Matches: 336, Mismatches: 36, Indels: 67
0.77 0.08 0.15
Matches are distributed among these distances:
18 21 0.06
19 5 0.01
20 4 0.01
21 9 0.03
22 13 0.04
23 12 0.04
24 8 0.02
25 100 0.30
26 149 0.44
27 5 0.01
28 10 0.03
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.46
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:23551340 original size:220 final size:221
Alignment explanation
Indices: 23551005--23551435 Score: 753
Period size: 220 Copynumber: 2.0 Consensus size: 221
23550995 TGTAAGTTAA
* *
23551005 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTGTGTAAGTTGTAAG
1 ATGTAAGTTGTAAGTTATAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAG
23551070 TTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATTGT
66 TTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATTGT
23551135 GTAAGTTGTAAGTTAAATGTATTATGTAAGTT-AATGTATATATGTAAGTTGTAAGTT-AATGTA
131 GTAAGTTGTAAGTTAAATGTATTATGTAAGTTAAATGTAT-TATGTAAGTTGTAAGTTAAATGTA
23551198 TTATGTAAGTTGTAAGTTACATGTATT
195 TTATGTAAGTTGTAAGTTACATGTATT
*
23551225 ATGTAAGTTGTAAG-TA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAA
1 ATGTAAGTTGTAAGTTATAATGTATTATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAA
* *
23551288 GTTATTATGTATTGTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
65 GTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATT
*
23551353 GTGTAAGTTGTAAGTTAAATGTATTATGTCAGTTAAATGTATTATGTAAGTTGTAAGTTAAATGT
129 GTGTAAGTTGTAAGTTAAATGTATTATGTAAGTTAAATGTATTATGTAAGTTGTAAGTTAAATGT
23551418 ATTATGTAAGTTGTAAGT
194 ATTATGTAAGTTGTAAGT
23551436 AATATAATTA
Statistics
Matches: 201, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
218 24 0.12
219 25 0.12
220 122 0.61
221 30 0.15
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.46
Consensus pattern (221 bp):
ATGTAAGTTGTAAGTTATAATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAG
TTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTATTATGTATTGT
GTAAGTTGTAAGTTAAATGTATTATGTAAGTTAAATGTATTATGTAAGTTGTAAGTTAAATGTAT
TATGTAAGTTGTAAGTTACATGTATT
Found at i:23551429 original size:18 final size:18
Alignment explanation
Indices: 23551361--23551404 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
23551351 TTGTGTAAGT
23551361 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
*
23551379 TGTCAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
23551397 TGTAAGTT
1 TGTAAGTT
23551405 GTAAGTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.45
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:23551624 original size:73 final size:73
Alignment explanation
Indices: 23551438--23551732 Score: 574
Period size: 73 Copynumber: 4.1 Consensus size: 73
23551428 TTGTAAGTAA
23551438 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
23551503 TA-TTTTT
66 TATTTTTT
23551510 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
23551575 TATTTTTT
66 TATTTTTT
23551583 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
23551648 TATTTTTT
66 TATTTTTT
*
23551656 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAGTATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
23551721 TATTTTTT
66 TATTTTTT
23551729 TATA
1 TATA
23551733 TTTTATTTTA
Statistics
Matches: 221, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
72 67 0.30
73 154 0.70
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.51
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:23551897 original size:13 final size:13
Alignment explanation
Indices: 23551879--23551949 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
23551869 ATTTATAATT
23551879 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
23551892 ATTTAAGTAACAT
1 ATTTAAGTAATAA
23551905 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
23551918 ATTTAAGTAACAT
1 ATTTAAGTAATAA
23551931 ATTTAAGTAATAA
1 ATTTAAGTAATAA
23551944 ATTTAA
1 ATTTAA
23551950 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:23551908 original size:26 final size:26
Alignment explanation
Indices: 23551878--23551949 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
23551868 TATTTATAAT
23551878 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
23551904 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
23551930 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
23551950 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:23551976 original size:17 final size:17
Alignment explanation
Indices: 23551954--23552111 Score: 149
Period size: 17 Copynumber: 8.6 Consensus size: 17
23551944 ATTTAAACAA
23551954 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
23551971 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
23551988 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
23552005 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
23552028 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
23552045 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
23552062 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
23552085 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
23552102 ATTTTAGTAA
1 ATTTTAGTAA
23552112 TAAATTTAAC
Statistics
Matches: 121, Mismatches: 4, Indels: 32
0.77 0.03 0.20
Matches are distributed among these distances:
16 2 0.02
17 88 0.73
23 29 0.24
24 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.46
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:23552000 original size:57 final size:57
Alignment explanation
Indices: 23551921--23552120 Score: 364
Period size: 57 Copynumber: 3.5 Consensus size: 57
23551911 GTAATAAATT
** *
23551921 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
23551978 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
23552035 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
23552092 TAAGTAATGTATTTTAGTAATAAATTTAA
1 TAAGTAATGTATTTTAGTAATAAATTTAA
23552121 CATTCAATCG
Statistics
Matches: 139, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 139 1.00
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.43
Consensus pattern (57 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
Found at i:23553470 original size:11 final size:11
Alignment explanation
Indices: 23553454--23553493 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
23553444 GATGATAATA
23553454 CATTAGTTACC
1 CATTAGTTACC
23553465 CATTAGTTACC
1 CATTAGTTACC
*
23553476 CACTAGTTACC
1 CATTAGTTACC
23553487 CA-TAGTT
1 CATTAGTT
23553494 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:23554584 original size:84 final size:83
Alignment explanation
Indices: 23554477--23554677 Score: 330
Period size: 84 Copynumber: 2.4 Consensus size: 83
23554467 ATTAACACCG
23554477 TTTTGTGGCGTTTTTGGTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTT
1 TTTTGTGGCGTTTTT-G-AAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTT
23554542 TCGTGGTCTGGAATTGCATT
64 TCGTGGTCTGGAATTGCATT
*
23554562 TTTTGTGGCGTTTTTAGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTT
1 TTTTGTGGCGTTTTT-GAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTT
23554627 CGTGGTCTGGAATTGCATT
65 CGTGGTCTGGAATTGCATT
* * *
23554646 ATTTGTGGCATTTTCTTAAAAACGCCACTAAA
1 TTTTGTGGCGTTTT-TGAAAAACGCCACTAAA
23554678 AGTTTAACTA
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
84 93 0.85
85 17 0.15
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (83 bp):
TTTTGTGGCGTTTTTGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTC
GTGGTCTGGAATTGCATT
Done.