Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 85 of 189
Found at i:23555935 original size:111 final size:112
Alignment explanation
Indices: 23555689--23556277 Score: 950
Period size: 112 Copynumber: 5.3 Consensus size: 112
23555679 AACACCTAGA
* * *
23555689 TTAGCGGCGCTTTACAAAAAACGCCACTAA-TGCCCCCCAAAGGACACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * * * * ** *
23555753 GAGTATTATTTGCGGCATTTTTTTATAAGCGCTGCTAATGTTCACTCT
66 GTGTATTATTTGCGGC-GTTATCTATAAACGCCACTAATGCTCACTCT
23555801 TTAGCGGCGCTTTACAATAAACGCCACTAAGT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
23555865 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
* **
23555912 TTAGTGGCGCTTCGCAATAAACGCCACTAAGT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* *
23555976 GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
* *
23556023 TTAGCGGCGCTTTACAATAAATGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACTGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
23556088 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
23556135 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGT-CCCCCCCAAAGGCCACAAAACGGCACCGTCTG
23556200 GGTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
65 GGTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
* **
23556248 TTAGCGGCGCTTTTCCTTAAACGCCACTAA
1 TTAGCGGCGCTTTACAATAAACGCCACTAA
23556278 TGCTCACTCT
Statistics
Matches: 447, Mismatches: 27, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
111 158 0.35
112 182 0.41
113 107 0.24
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (112 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
Found at i:23556062 original size:223 final size:223
Alignment explanation
Indices: 23555689--23556277 Score: 966
Period size: 223 Copynumber: 2.6 Consensus size: 223
23555679 AACACCTAGA
* * *
23555689 TTAGCGGCGCTTTACAAAAAACGCCACTAA-TGCCCCCCAAAGGACACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * * * * *
23555753 GAGTATTATTTGCGGCATTTTTTTATAAGCGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAA
66 GTGTATTATTTGCGGC-GTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAA
23555818 TAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGT
130 TAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGT
23555883 TATCTATAAACGCCACTAATGCTCACTCT
195 TATCTATAAACGCCACTAATGCTCACTCT
* **
23555912 TTAGTGGCGCTTCGCAATAAACGCCACTAAGT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
23555976 GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAAT
66 GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAAT
* *
23556041 AAATGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACTGTCTGGGTGTATTATTTGCGGCGT
131 AAACGCCACTAAGT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGT
23556106 TATCTATAAACGCCACTAATGCTCACTCT
195 TATCTATAAACGCCACTAATGCTCACTCT
23556135 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCCAAAGGCCACAAAACGGCACCGTCTG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGT-CCCCCCCAAAGGCCACAAAACGGCACCGTCTG
* * * **
23556200 GGTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTCCT
65 GGTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAA
23556265 TAAACGCCACTAA
130 TAAACGCCACTAA
23556278 TGCTCACTCT
Statistics
Matches: 340, Mismatches: 22, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
222 57 0.17
223 179 0.53
224 1 0.00
225 103 0.30
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (223 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGG
GTGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTACAAT
AAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGCGGCGTT
ATCTATAAACGCCACTAATGCTCACTCT
Found at i:23556270 original size:40 final size:40
Alignment explanation
Indices: 23556225--23556341 Score: 198
Period size: 40 Copynumber: 2.9 Consensus size: 40
23556215 GCGTTATCTA
**
23556225 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTCCT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
23556265 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
* *
23556305 TAAACGCCGCTATTGCTCACTCTTTAGCGGCGCTTTT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTT
23556342 GCTCCAAACG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (40 bp):
TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
Found at i:23557473 original size:18 final size:18
Alignment explanation
Indices: 23557450--23557492 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
23557440 TTTCAGGTAA
23557450 AACCGAATT-AATTCGGTT
1 AACCG-ATTGAATTCGGTT
23557468 AACCGATTGAATTCGGTT
1 AACCGATTGAATTCGGTT
*
23557486 AATCGAT
1 AACCGAT
23557493 CGGTTAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (18 bp):
AACCGATTGAATTCGGTT
Found at i:23558886 original size:6 final size:6
Alignment explanation
Indices: 23558875--23558901 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
23558865 CAATTCAATA
23558875 AAAATT AAAATT AAAATT AAAATT AAA
1 AAAATT AAAATT AAAATT AAAATT AAA
23558902 GGTCCCTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AAAATT
Found at i:23563909 original size:16 final size:16
Alignment explanation
Indices: 23563888--23563942 Score: 92
Period size: 16 Copynumber: 3.4 Consensus size: 16
23563878 GTTTGGTTCA
23563888 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
23563904 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
23563920 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
23563936 CTGTAAT
1 CTGTAAT
23563943 AATAATTCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:23564012 original size:44 final size:44
Alignment explanation
Indices: 23563924--23564050 Score: 202
Period size: 44 Copynumber: 2.9 Consensus size: 44
23563914 ATAGAGCTGT
* *
23563924 AATGGAATAGAACTGTAATAATAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC-TTGTGTTTGGTTGAATGG
*
23563969 AATGAAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
23564013 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTT
1 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTT
23564051 AGCATGAGAA
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
43 1 0.01
44 56 0.73
45 20 0.26
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.39
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
Found at i:23564226 original size:17 final size:18
Alignment explanation
Indices: 23564180--23564215 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23564170 TTATTATTAA
23564180 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
23564198 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
23564216 TTTAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:23564250 original size:55 final size:55
Alignment explanation
Indices: 23564134--23564250 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 55
23564124 GATTATTAAT
* * *
23564134 ATAAATAATAAATAATTTAATCATATTTTAACATAGTTATTATTAAATATAATTTA
1 ATAAA-AATAAATAATTTAATAAAATTTTAACATAATTATTATTAAATATAATTTA
* * * *
23564190 ATAAAAATATATAATTTAATAAAAATTTTAATATAATTATTCTTATATA-AATTTA
1 ATAAAAATAAATAATTTAAT-AAAATTTTAACATAATTATTATTAAATATAATTTA
*
23564245 CTAAAA
1 ATAAAA
23564251 TCATTGTACA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
55 25 0.48
56 27 0.52
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (55 bp):
ATAAAAATAAATAATTTAATAAAATTTTAACATAATTATTATTAAATATAATTTA
Found at i:23564300 original size:18 final size:18
Alignment explanation
Indices: 23564277--23564323 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
23564267 AATATGCCCG
*
23564277 GGCCCAAACTAATAAATA
1 GGCCCAAACTAATAAACA
* *
23564295 GGCCCAAACCATTAAACA
1 GGCCCAAACTAATAAACA
*
23564313 AGCCCAAACTA
1 GGCCCAAACTA
23564324 TCTCAAGCCC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.30, G:0.11, T:0.13
Consensus pattern (18 bp):
GGCCCAAACTAATAAACA
Found at i:23564734 original size:16 final size:16
Alignment explanation
Indices: 23564702--23564734 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
23564692 TTATTCTTAG
23564702 TTTCGTTTTGTATTTT
1 TTTCGTTTTGTATTTT
23564718 TTTCTGTTTTGTATTTT
1 TTTC-GTTTTGTATTTT
23564735 ATTTTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.06, C:0.06, G:0.12, T:0.76
Consensus pattern (16 bp):
TTTCGTTTTGTATTTT
Found at i:23565326 original size:3 final size:3
Alignment explanation
Indices: 23565320--23565396 Score: 104
Period size: 3 Copynumber: 25.7 Consensus size: 3
23565310 AGTTTTTTTA
* *
23565320 TAT TAT TAAT TA- TGT TA- TAT TTAT TAT TAC TAT TAT TAT TAT TAT
1 TAT TAT T-AT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
23565365 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
23565397 CCCTTACTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
2 3 0.05
3 57 0.86
4 6 0.09
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:23566589 original size:21 final size:20
Alignment explanation
Indices: 23566564--23566625 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
23566554 TTCGACAATC
23566564 ATAATATATAATACTATAAAA
1 ATAATATATAAT-CTATAAAA
**
23566585 ATAATATATAATCTACT--TT
1 ATAATATATAATCTA-TAAAA
23566604 ATAATATATAATGCTATAAAA
1 ATAATATATAAT-CTATAAAA
23566625 A
1 A
23566626 ACTTGAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
19 13 0.39
20 6 0.18
21 14 0.42
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (20 bp):
ATAATATATAATCTATAAAA
Found at i:23569174 original size:29 final size:28
Alignment explanation
Indices: 23569127--23569200 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
23569117 AATTAAAATT
* *
23569127 AAAATTTTTTAACTATTTTTTTATTTTA
1 AAAAATTTCTAACTATTTTTTTATTTTA
23569155 AAAAATTTCTAACTATTTTTTTATTTTA
1 AAAAATTTCTAACTATTTTTTTATTTTA
* *
23569183 AAAAAATTCTAACCATTT
1 AAAAATTTCTAACTATTT
23569201 AATAAATATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (28 bp):
AAAAATTTCTAACTATTTTTTTATTTTA
Found at i:23569866 original size:3 final size:3
Alignment explanation
Indices: 23569858--23569934 Score: 154
Period size: 3 Copynumber: 25.7 Consensus size: 3
23569848 TTTATCCAGC
23569858 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23569906 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23569935 TTCAAATCTA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:23571421 original size:33 final size:33
Alignment explanation
Indices: 23571364--23571501 Score: 132
Period size: 33 Copynumber: 4.2 Consensus size: 33
23571354 ACTTACCCTA
* *
23571364 TGTTTAATATCCCAGTGGACTATCTTTGTTTTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
* * * * *
23571397 TGTTTACTATTCCAGCGGATTATCTCTATTCTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
* * * * * * *
23571430 TGTTTACTGTCCTAGTAGATTGTCTATGTTTTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
* *
23571463 TGTTTACTGTCCCAGTGAACTATCTTTGTTCTG
1 TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
23571496 TGTTTA
1 TGTTTA
23571502 TTGTCTTAGC
Statistics
Matches: 82, Mismatches: 23, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
33 82 1.00
ACGTcount: A:0.17, C:0.17, G:0.18, T:0.49
Consensus pattern (33 bp):
TGTTTACTATCCCAGTGGACTATCTTTGTTCTG
Found at i:23575824 original size:13 final size:13
Alignment explanation
Indices: 23575806--23575831 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23575796 ACAATCGAAT
23575806 TTTTTGTTTTTTG
1 TTTTTGTTTTTTG
23575819 TTTTTGTTTTTTG
1 TTTTTGTTTTTTG
23575832 CTGAGAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (13 bp):
TTTTTGTTTTTTG
Found at i:23576635 original size:51 final size:51
Alignment explanation
Indices: 23576575--23576676 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
23576565 CGGATCACAT
23576575 TTATCACTTGTCACTTGTC-CTTAATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCAC-TAATCAGATAAGTGTAGCTAAAGCTACCAC
* *
23576626 TTATCACTTGTTACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCAC
23576677 CACTACACCA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 47 0.98
52 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTAATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:23582623 original size:15 final size:15
Alignment explanation
Indices: 23582605--23582638 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
23582595 TAGCTAGTTG
23582605 AACATAGGCTATAAA
1 AACATAGGCTATAAA
23582620 AACATAGGCTATAAA
1 AACATAGGCTATAAA
23582635 AACA
1 AACA
23582639 CATTGCTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.18
Consensus pattern (15 bp):
AACATAGGCTATAAA
Found at i:23586720 original size:15 final size:15
Alignment explanation
Indices: 23586700--23586728 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23586690 GTATTTTTGC
23586700 TTGATAACACGGTGA
1 TTGATAACACGGTGA
23586715 TTGATAACACGGTG
1 TTGATAACACGGTG
23586729 TGTGAAGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TTGATAACACGGTGA
Found at i:23591715 original size:16 final size:15
Alignment explanation
Indices: 23591690--23591719 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
23591680 AAGAAAGTTT
23591690 TTAGTAGTAGTTAGA
1 TTAGTAGTAGTTAGA
23591705 TTAGTTAGTAGTTAG
1 TTAG-TAGTAGTTAG
23591720 CAGTTAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (15 bp):
TTAGTAGTAGTTAGA
Found at i:23596246 original size:12 final size:12
Alignment explanation
Indices: 23596230--23596271 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
23596220 ATGAAATTGT
23596230 AAAATAAATA-A
1 AAAATAAATATA
23596241 ATAAATAAATATA
1 A-AAATAAATATA
*
23596254 AAAATAAACAGTA
1 AAAATAAATA-TA
23596267 AAAAT
1 AAAAT
23596272 TCAACCTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 1 0.04
12 17 0.63
13 9 0.33
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (12 bp):
AAAATAAATATA
Found at i:23597099 original size:72 final size:72
Alignment explanation
Indices: 23596970--23597201 Score: 295
Period size: 72 Copynumber: 3.3 Consensus size: 72
23596960 AAAATCATAT
** * * *
23596970 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTTGAACATAAATTTAATATCTAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
23597033 GACCAAAC
65 AACCAAAC
*
23597041 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
23597106 ACCAAAC
66 ACCAAAC
*
23597113 ATAAA-AAGCCATTGATAAAACTAGATTACACATAAAT-A--AG----TAAATTCAATATCCAAA
1 ATAAACAA-CTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
23597170 AACCAAAC
65 AACCAAAC
*
23597178 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
23597202 TTTAGCATTG
Statistics
Matches: 147, Mismatches: 10, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
65 45 0.31
66 2 0.01
69 2 0.01
71 28 0.19
72 70 0.48
ACGTcount: A:0.55, C:0.14, G:0.06, T:0.25
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:23601333 original size:16 final size:16
Alignment explanation
Indices: 23601310--23601354 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
23601300 ATAATTACAC
23601310 TAAA-AAATAATAAAA
1 TAAATAAATAATAAAA
* *
23601325 TAAATAAATAATACAT
1 TAAATAAATAATAAAA
*
23601341 TAAATAAAAAATAA
1 TAAATAAATAATAA
23601355 CTCTTAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (16 bp):
TAAATAAATAATAAAA
Found at i:23612940 original size:18 final size:18
Alignment explanation
Indices: 23612917--23612952 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23612907 TATTATTTTG
23612917 AAATTTAAAATATATAAA
1 AAATTTAAAATATATAAA
23612935 AAATTTAAAATATATAAA
1 AAATTTAAAATATATAAA
23612953 TTATTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATTTAAAATATATAAA
Found at i:23612962 original size:18 final size:18
Alignment explanation
Indices: 23612917--23612962 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
23612907 TATTATTTTG
*
23612917 AAATTTAAAATATATAAA
1 AAATTAAAAATATATAAA
*
23612935 AAATTTAAAATATATAAA
1 AAATTAAAAATATATAAA
**
23612953 TTATTAAAAA
1 AAATTAAAAA
23612963 AACTCATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATTAAAAATATATAAA
Found at i:23614204 original size:37 final size:38
Alignment explanation
Indices: 23614137--23614214 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 38
23614127 GAGAAAATGA
* *
23614137 ATAAATTTATAAAAATATAAAAAGATATATATGTATAT
1 ATAAATTTATAAAAATATAAAAAGATATATAAGAATAT
*
23614175 ATAAA-TTAT-AAAATATAAAAAATATATATAAGAATAT
1 ATAAATTTATAAAAATAT-AAAAAGATATATAAGAATAT
23614212 ATA
1 ATA
23614215 TATATACATT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 7 0.19
37 24 0.67
38 5 0.14
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (38 bp):
ATAAATTTATAAAAATATAAAAAGATATATAAGAATAT
Found at i:23614239 original size:43 final size:45
Alignment explanation
Indices: 23614147--23614296 Score: 150
Period size: 45 Copynumber: 3.3 Consensus size: 45
23614137 ATAAATTTAT
23614147 AAAAATATA-AAAAGATATATATGTATATATAAATTATAAAATATA
1 AAAAATATATAAAAGATATATA-GTATATATAAATTATAAAATATA
* *
23614192 AAAAATATATATAAGA-ATATA-TATATATACATTTATGAAAATGA-A
1 AAAAATATATAAAAGATATATAGTATATATA-AATTAT-AAAAT-ATA
*
23614237 AAAAATATGCAT-ATAGATATATAGATATGTATATAAATTATAAAATAT-
1 AAAAATAT--ATAAAAGATATATAG-TA--TATATAAATTATAAAATATA
23614285 AAAAATATATAA
1 AAAAATATATAA
23614297 GTATGTGTAT
Statistics
Matches: 87, Mismatches: 5, Indels: 24
0.75 0.04 0.21
Matches are distributed among these distances:
43 8 0.09
44 5 0.06
45 28 0.32
46 11 0.13
47 8 0.09
48 9 0.10
49 7 0.08
50 5 0.06
51 6 0.07
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.33
Consensus pattern (45 bp):
AAAAATATATAAAAGATATATAGTATATATAAATTATAAAATATA
Found at i:23614324 original size:43 final size:43
Alignment explanation
Indices: 23614271--23614352 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
23614261 ATATGTATAT
*
23614271 AAATTATAAAATATA-AAA-ATATATAAGTATGTGTATATACATA
1 AAATTATAAAA-ATACAAAGA-ATATAAGTATGTATATATACATA
* *
23614314 AAATTGTAAAAATACAAAGAATATATGTATGTATATATA
1 AAATTATAAAAATACAAAGAATATAAGTATGTATATATA
23614353 TAATGAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 3 0.09
43 30 0.88
44 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (43 bp):
AAATTATAAAAATACAAAGAATATAAGTATGTATATATACATA
Found at i:23616309 original size:100 final size:99
Alignment explanation
Indices: 23616038--23616530 Score: 566
Period size: 100 Copynumber: 5.0 Consensus size: 99
23616028 CTGTTCACCA
*** * * * * *
23616038 GGGAAGTAAGATTTGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAAGCAAGATTCG
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATCT-TTTAATTGCAATGTCGGGGAAGCAAGATTCA
* * ** *
23616103 CCATTGTAGCTTCAATCTATTCTGCTGCACCGCCT
65 CCGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
* * * * * **
23616138 GGGAAGTAAGATTCACCATTGCGACTTCAATC---T--TTGCAATGTCGGGGAAGCAAGATTCGT
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCAC
*
23616198 CGTTGTAGCTTCAATCTGTTCCACTACACCGCCA
66 CGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
** * * *
23616232 GGGAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTTCAATTGCAATGTCGGCGAAGTAAGATTCA
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTT-AATTGCAATGTCGGGGAAGCAAGATTCA
* *
23616297 CCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
65 CCGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
* *
23616332 GGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTTAATTGCAATGTCGGGGAAGCGAGATTCA
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCA
*
23616397 CCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
65 CCGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
* * * * *
23616432 GGGAAGTAAGATTTACCGTTCTGGCCTCAATCTTTTAATTACAATG-CTAGGGAAGCGAGATTCG
1 GGGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAATTGCAATGTC-GGGGAAGCAAGATTCA
* *
23616496 CTGTTGTAGCTTCAATCTGTTCCACCACACCGCCT
65 CCGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
23616531 AGGAGATAAT
Statistics
Matches: 339, Mismatches: 46, Indels: 17
0.84 0.11 0.04
Matches are distributed among these distances:
94 78 0.23
96 1 0.00
97 1 0.00
98 1 0.00
99 59 0.17
100 195 0.58
101 4 0.01
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (99 bp):
GGGAAGTAAGATTTACCGTTGTGGCCTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCAC
CGTTGTAGCTTCAATCTGTTCCACTACACCGCCT
Found at i:23616364 original size:194 final size:194
Alignment explanation
Indices: 23616035--23616530 Score: 636
Period size: 194 Copynumber: 2.5 Consensus size: 194
23616025 AATCTGTTCA
* * * *
23616035 CCAGGGAAGTAAGATTTGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGAAGCAAGAT
1 CCAGGGAAGTAAGATTTGTCGTTGTGGCTTCAATCT-TTTAATTGCAATG-TAGGGAAGCAAGAT
* ** *
23616100 TCGCCATTGTAGCTTCAATCTATTCTGCTGCACCGCCTGGGAAGTAAGATTCACCATTGCGACTT
64 TCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAGTAAGATTCACCATTGCGACCT
**
23616165 CAATC-T-TTGCAATGTCGGGGAAGCAAGATTCGTCGTTGTAGCTTCAATCTGTTCCACTACACC
129 CAATCTTATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTACACC
23616228 G
194 G
* *
23616229 CCAGGGAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTTCAATTGCAATGTCGGCGAAGTAAGAT
1 CCAGGGAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTT-AATTGCAATGTAGG-GAAGCAAGAT
* * * *
23616294 TCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAGTAAGATTCACCGTTGTGGCCT
64 TCGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAGTAAGATTCACCATTGCGACCT
* *
23616359 CAATCTTTTTAATTGCAATGTCGGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCACTG
129 CAATC---TT-ATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTA
23616424 CACCG
190 CACCG
* ** * * * *
23616429 CCTGGGAAGTAAGATTTACCGTTCTGGCCTCAATCTTTTAATTACAATGCTAGGGAAGCGAGATT
1 CCAGGGAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTTAATTGCAATG-TAGGGAAGCAAGATT
* * **
23616494 CGCTGTTGTAGCTTCAATCTGTTCCACCACACCGCCT
65 CGCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
23616531 AGGAGATAAT
Statistics
Matches: 262, Mismatches: 31, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
193 6 0.02
194 114 0.44
198 1 0.00
199 50 0.19
200 91 0.35
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (194 bp):
CCAGGGAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTTAATTGCAATGTAGGGAAGCAAGATTC
GCCGTTGTAGCTTCAATCTATTCCACTGCACCGCCTGGGAAGTAAGATTCACCATTGCGACCTCA
ATCTTATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTACACCG
Found at i:23616462 original size:50 final size:50
Alignment explanation
Indices: 23616088--23616464 Score: 291
Period size: 50 Copynumber: 7.7 Consensus size: 50
23616078 TGCAATGTTG
* * * * * **
23616088 GGGAAGCAAGATTCGCCATTGTAGCTTCAATCTATTCTGCTGCACCGCCT
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTGTTCCACTGCACCGCCT
* * * * * *
23616138 GGGAAGTAAGATTCACCATTGCGACTTCAATCT-TTGCAATG--TCG---
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTGTTCCACTGCACCGCCT
* ** * * *
23616182 GGGAAGCAAGATTCGTCGTTGTAGCTTCAATCTGTTCCACTACACCGCCA
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTGTTCCACTGCACCGCCT
*** * * * ** *
23616232 GGGAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTTCAATTGCAATGTC-
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTGTTCCACTGCACCGCCT
* *
23616281 GGCGAAGTAAGATTCACCGTTGTAGCTTCAATCTATTCCACTGCACCGCCT
1 GG-GAAGTAAGATTCACCGTTGTGGCTTCAATCTGTTCCACTGCACCGCCT
* * ** * ** * *
23616332 GGGAAGTAAGATTCACCGTTGTGGCCTCAATCTTTTTAATTGCAATGTCG
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTGTTCCACTGCACCGCCT
** *
23616382 GGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTGTTCCACTGCACCGCCT
* * *
23616432 GGGAAGTAAGATTTACCGTTCTGGCCTCAATCT
1 GGGAAGTAAGATTCACCGTTGTGGCTTCAATCT
23616465 TTTAATTACA
Statistics
Matches: 250, Mismatches: 69, Indels: 16
0.75 0.21 0.05
Matches are distributed among these distances:
44 26 0.10
45 5 0.02
47 4 0.02
49 6 0.02
50 207 0.83
51 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (50 bp):
GGGAAGTAAGATTCACCGTTGTGGCTTCAATCTGTTCCACTGCACCGCCT
Found at i:23616703 original size:128 final size:129
Alignment explanation
Indices: 23616532--23617320 Score: 1198
Period size: 128 Copynumber: 6.2 Consensus size: 129
23616522 ACACCGCCTA
* * * * * *
23616532 GGAGATAATATTGGTTGCGATCTACTCTACTGCAAGTTCAGAGAGATAAGATCTGTGTTTTTAAT
1 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAAT
*
23616597 CCGCTCCACTGTAACTTCAAGG-AGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAG
66 CCGCTCCACTGCAACTTCAAGGAAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAG
*
23616660 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGATTTTAAT
1 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAAT
* * *
23616725 CCACTCTACTGCAACTTC-AGGAAGATAGGATTGATTTCTTCTGTCTGCTCCACTTCTGCTTAG
66 CCGCTCCACTGCAACTTCAAGGAAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAG
23616788 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAAT
1 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAAT
* *
23616853 CCGCTCCACTGCAACTTC-AGGAAAATAGGATTGATTTCTTCTGTCTACTCCACTACTGCTTAG
66 CCGCTCCACTGCAACTTCAAGGAAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAG
* * * *
23616916 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAG-GTATAGGATATGTAAATTTAA
1 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAG-ATAAGATCTGTGATTTTAA
* * * * *
23616980 TCCGCTCCACTACAACTT-TAGGAATATAAGATTGATTTCTTCTGTCTGCTCTACTACTGCTTAG
65 TCCGCTCCACTGCAACTTCAAGGAAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAG
** * *
23617044 GGAGATAAGACTGGATGTAATCTGCTCTACTGCAACTTCAGAG-GTATAAGATTTGTGATTTTAG
1 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAG-ATAAGATCTGTGATTTTAA
** * * *
23617108 TTTGCTCCACTGCAACTTC-AGGGAGATAGGATTGATTTCTTCTGTCTGCTCTACTACTGCTTAA
65 TCCGCTCCACTGCAACTTCAAGGAAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAG
23617172 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAAT
1 GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAAT
* * *
23617237 CCACTCCATTGCAACTTC-AGGGAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAG
66 CCGCTCCACTGCAACTTCAAGGAAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAG
23617300 GGAGATAAGACTGGATGCGAT
1 GGAGATAAGACTGGATGCGAT
23617321 AAATCTGCTT
Statistics
Matches: 606, Mismatches: 50, Indels: 10
0.91 0.08 0.02
Matches are distributed among these distances:
127 4 0.01
128 601 0.99
129 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.32
Consensus pattern (129 bp):
GGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAAT
CCGCTCCACTGCAACTTCAAGGAAGATAGGATTGATTTCTTCTGTCTGCTCCACTACTGCTTAG
Found at i:23616866 original size:44 final size:43
Alignment explanation
Indices: 23616551--23617263 Score: 219
Period size: 44 Copynumber: 16.7 Consensus size: 43
23616541 ATTGGTTGCG
* * * *
23616551 ATCTACTCTACTGCAAGTTCAGAGAGATAAGATCTGTGTTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGA-CTGTGATTTTA
* * * *
23616595 ATCCGCTCCACTGTAACTTCA-AGGAGATAGGA-T-TGATTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGA-GAGATAAGACTGTGA-TT-TT-A
* * ** * ***
23616639 GTCTGCTCCACTACTGCTT-AGGGAGATAAGACTG-GA-TGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGATTTTA
* *
23616679 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTATGATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGA-CTGTGATTTTA
** * * *
23616723 ATCCACTCTACTGCAACTTCAG-GAAGATAGGA-T-TGATTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGAG-AGATAAGACTGTGA-TT-TT-A
* * ** * ***
23616767 GTCTGCTCCACTTCTGCTT-AGGGAGATAAGACTG-GA-TGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGATTTTA
*
23616807 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGA-CTGTGATTTTA
* * * *
23616851 ATCCGCTCCACTGCAACTTCAG-GAAAATAGGA-T-TGATTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGAG-AGATAAGACTGTGA-TT-TT-A
* * * ** * ***
23616895 GTCTACTCCACTACTGCTT-AGGGAGATAAGACTG-GA-TGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGATTTTA
* * * * *
23616935 ATCTGCTCTACTGCAACTTCAGAG-GTATAGGATATGTAAATTTA
1 ATCTGCTCCACTGCAACTTCAGAGAG-ATAAGA-CTGTGATTTTA
* * * * *
23616979 ATCCGCTCCACTACAACTTTAG-GAATATAAGA-T-TGATTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGAG-AGATAAGACTGTGA-TT-TT-A
* * * ** * *
23617023 GTCTGCTCTACTACTGCTT-AGGGAGATAAGACTG-GA-TGTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGATTTTA
* *
23617063 ATCTGCTCTACTGCAACTTCAGAG-GTATAAGATTTGTGATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAG-ATAAGA-CTGTGATTTTA
* * * * *
23617107 GTTTGCTCCACTGCAACTTCAGGGAGATAGGA-T-TGATTTCTTCT
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGA-TT-TT-A
* * * ** * ***
23617151 GTCTGCTCTACTACTGCTTAAG-GAGATAAGACTG-GA-TGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGATTTTA
*
23617191 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGA-CTGTGATTTTA
** * *
23617235 ATCCACTCCATTGCAACTTCAGGGAGATA
1 ATCTGCTCCACTGCAACTTCAGAGAGATA
23617264 GGATTGATTT
Statistics
Matches: 477, Mismatches: 135, Indels: 114
0.66 0.19 0.16
Matches are distributed among these distances:
40 75 0.16
41 62 0.13
42 31 0.06
43 66 0.14
44 242 0.51
45 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (43 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGATTTTA
Found at i:23617823 original size:24 final size:24
Alignment explanation
Indices: 23617770--23617826 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
23617760 GGATTGCCCT
23617770 CACTGTAATCTTCAAAGTTCAATC
1 CACTGTAATCTTCAAAGTTCAATC
* * **
23617794 CGCTGTAGTCTTCAGGGTT-AAGTC
1 CACTGTAATCTTCAAAGTTCAA-TC
23617818 CACTGTAAT
1 CACTGTAAT
23617827 TTTGGGACAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
23 2 0.08
24 24 0.92
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (24 bp):
CACTGTAATCTTCAAAGTTCAATC
Found at i:23618698 original size:7 final size:7
Alignment explanation
Indices: 23618688--23618718 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
23618678 TTCTTTTCTT
23618688 TTTATTC
1 TTTATTC
23618695 TTTATTC
1 TTTATTC
23618702 TTTATTC
1 TTTATTC
23618709 TTTATTC
1 TTTATTC
23618716 TTT
1 TTT
23618719 TCATTTTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTATTC
Found at i:23618726 original size:7 final size:6
Alignment explanation
Indices: 23618669--23618742 Score: 55
Period size: 7 Copynumber: 11.8 Consensus size: 6
23618659 TTGACCTCTC
*
23618669 CTTTTT -TTTTT CTTTTCT TTTTATT CTTTATT CTTTATT CTTTATT C-TTTT
1 CTTTTT CTTTTT CTTTT-T CTTT-TT CTTT-TT CTTT-TT CTTT-TT CTTTTT
*
23618720 CATTTTT C-TTTT CTTTTT GTTTT
1 C-TTTTT CTTTTT CTTTTT CTTTT
23618743 ATTTTTTTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
5 13 0.22
6 14 0.24
7 31 0.53
8 1 0.02
ACGTcount: A:0.07, C:0.14, G:0.01, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:23619191 original size:7 final size:7
Alignment explanation
Indices: 23619179--23619220 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
23619169 CCCCGGTAGA
23619179 GTTTTTT
1 GTTTTTT
23619186 GTTTTTT
1 GTTTTTT
*
23619193 ATTTTTT
1 GTTTTTT
23619200 GTTTTTT
1 GTTTTTT
23619207 -TATTTTT
1 GT-TTTTT
*
23619214 ATTTTTT
1 GTTTTTT
23619221 TGCCTCCACT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 1 0.03
7 29 0.94
8 1 0.03
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (7 bp):
GTTTTTT
Found at i:23619205 original size:21 final size:21
Alignment explanation
Indices: 23619179--23619220 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
23619169 CCCCGGTAGA
23619179 GTTTTTTGT-TTTTTATTTTTT
1 GTTTTTT-TATTTTTATTTTTT
23619200 GTTTTTTTATTTTTATTTTTT
1 GTTTTTTTATTTTTATTTTTT
23619221 TGCCTCCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (21 bp):
GTTTTTTTATTTTTATTTTTT
Found at i:23619221 original size:15 final size:15
Alignment explanation
Indices: 23619180--23619213 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
23619170 CCCGGTAGAG
23619180 TTTTTTG-TTTTTTA
1 TTTTTTGTTTTTTTA
23619194 TTTTTTGTTTTTTTA
1 TTTTTTGTTTTTTTA
23619209 TTTTT
1 TTTTT
23619214 ATTTTTTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.06, C:0.00, G:0.06, T:0.88
Consensus pattern (15 bp):
TTTTTTGTTTTTTTA
Found at i:23624270 original size:37 final size:37
Alignment explanation
Indices: 23624198--23624270 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
23624188 AAAATGAATA
* *
23624198 AAATTATAAAAATATAAAAAGATATATACGTATATAC
1 AAATTATAAAAATATAAAAAGATATATAAGAATATAC
23624235 AAATTAT-AAAATATAAAAA-ATATATGTAAGAATATA
1 AAATTATAAAAATATAAAAAGATATA--TAAGAATATA
23624271 TATACATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 5 0.16
36 12 0.38
37 15 0.47
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (37 bp):
AAATTATAAAAATATAAAAAGATATATAAGAATATAC
Found at i:23624356 original size:36 final size:36
Alignment explanation
Indices: 23624307--23624381 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
23624297 ATGCATATAG
*
23624307 ATATATAGATATGTATATAAATTATAAAA-TATAAAA
1 ATATATAGATATGTATATAAA-CATAAAATTATAAAA
* *
23624343 ATATATA-AGTATGTGTATATACATAAAATTATAAAA
1 ATATATAGA-TATGTATATAAACATAAAATTATAAAA
23624379 ATA
1 ATA
23624382 CGAAGAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 7 0.21
36 27 0.79
ACGTcount: A:0.56, C:0.01, G:0.07, T:0.36
Consensus pattern (36 bp):
ATATATAGATATGTATATAAACATAAAATTATAAAA
Found at i:23628284 original size:15 final size:12
Alignment explanation
Indices: 23628253--23628277 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23628243 ATATTATAAA
23628253 AATAATATACTT
1 AATAATATACTT
23628265 AATAATATACTT
1 AATAATATACTT
23628277 A
1 A
23628278 CTCATAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAATATACTT
Found at i:23653027 original size:205 final size:203
Alignment explanation
Indices: 23652450--23653030 Score: 527
Period size: 205 Copynumber: 2.8 Consensus size: 203
23652440 TACCGCCAAG
23652450 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
1 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
* *
23652515 AAACGCAATAGCATTATCTTCAATTTT--TTTTTGTTGGGCTTCGGAGTTTGGGCACTCG-GGGA
66 AAACGCAATAGCATTAT-TT-TATTTTCATTTTTGTTGGG-TTCGGAGTTTGAGCACT-GAGGGA
* * ** * *
23652577 CTTCAACAGGCCCTATGTTTGTAAGT-TACATTTTTTTTTTATACATTTTGTGACTATAATTAGC
127 CTTCAACAGGCCCTA--TATATAAGTATAC---TTTTTTTTATACATGCTGAGAC-ATAATTAAC
* * * *
23652641 CGAGGTATATTTAATGGA
186 CGAGATATATTCAACGAA
23652659 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGC-A-A-A------TTCGACTCCCGGC
1 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
* * *
23652715 AAACGCAATAGC-TTA-ATTATCTGTTC-TGATTTTGTTGGGTTCGTAGTTTTTGAGCACTTAGG
66 AAACGCAATAGCATTATTTTAT-T-TTCAT--TTTTGTTGGGTTCGGAG--TTTGAGCACTGAGG
* * * **
23652777 GACTT-AACAGGCCCTAATATAGTTAATATAATTTACTTTTTTTTTTAATATGCTGAGA-ATTGT
125 GACTTCAACAGGCCCT-ATATA--TAA-GT-A--TACTTTTTTTTAT-ACATGCTGAGACATAAT
*
23652840 TAACTGAGATATATCGTCAACGAA
182 TAACCGAGATATAT--TCAACGAA
23652864 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
1 GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
* * *
23652929 AAACGCAATAGCAATAGTTTTATTTTCAATTTCCTTTTTGGGTTTGGAGTTTGAGCACTGAGGGA
66 AAACGCAATAGCATTA-TTTTATTTTC-ATTT--TTGTTGGGTTCGGAGTTTGAGCACTGAGGGA
23652994 CTTCAACAGGCCCTA-ATATAAGTA-ACCTTTTTTTTAT
127 CTTCAACAGGCCCTATATATAAGTATA-CTTTTTTTTAT
23653031 TTTATATTTT
Statistics
Matches: 306, Mismatches: 29, Indels: 75
0.75 0.07 0.18
Matches are distributed among these distances:
196 2 0.01
197 2 0.01
198 2 0.01
199 4 0.01
200 33 0.11
201 20 0.07
202 20 0.07
203 15 0.05
204 9 0.03
205 52 0.17
206 2 0.01
207 6 0.02
208 12 0.04
209 40 0.13
210 1 0.00
211 1 0.00
212 3 0.01
214 28 0.09
215 26 0.08
216 11 0.04
217 17 0.06
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.35
Consensus pattern (203 bp):
GCGTTTGTAGTCCAACGGTTAGGATAATTGCCTTCCAAGCAATAGACCCGGGTTCGACTCCCGGC
AAACGCAATAGCATTATTTTATTTTCATTTTTGTTGGGTTCGGAGTTTGAGCACTGAGGGACTTC
AACAGGCCCTATATATAAGTATACTTTTTTTTATACATGCTGAGACATAATTAACCGAGATATAT
TCAACGAA
Found at i:23659989 original size:91 final size:91
Alignment explanation
Indices: 23659878--23660058 Score: 353
Period size: 91 Copynumber: 2.0 Consensus size: 91
23659868 TCGGAGTCTT
23659878 TATTTATAGGCATGAGAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
1 TATTTATAGGCATGAGAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
23659943 GTACATTAAAACTTTATCTTCATCAC
66 GTACATTAAAACTTTATCTTCATCAC
*
23659969 TATTTATAGGCATGATAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
1 TATTTATAGGCATGAGAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
23660034 GTACATTAAAACTTTATCTTCATCA
66 GTACATTAAAACTTTATCTTCATCA
23660059 TGATGGACAT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (91 bp):
TATTTATAGGCATGAGAAGTATAAAAGAAGTAAAGATCTAATTCTAATAACTACTAGAATTTAAA
GTACATTAAAACTTTATCTTCATCAC
Found at i:23665277 original size:9 final size:9
Alignment explanation
Indices: 23665263--23665433 Score: 50
Period size: 9 Copynumber: 18.6 Consensus size: 9
23665253 ATGCTTTTAC
23665263 TAAAAATTA
1 TAAAAATTA
*
23665272 TAAAAA-AA
1 TAAAAATTA
23665280 TAAAAATCTA
1 TAAAAAT-TA
23665290 T-AAAATCTA
1 TAAAAAT-TA
*
23665299 TAAATATTA
1 TAAAAATTA
**
23665308 TTAAATTTTAA
1 -TAAAAATT-A
23665319 TAAAAAAATT-
1 T--AAAAATTA
* *
23665329 CAAATATTA
1 TAAAAATTA
*
23665338 -AAAATTTA
1 TAAAAATTA
*
23665346 TTAAAAAATA
1 -TAAAAATTA
*
23665356 GAAAAA-TA
1 TAAAAATTA
***
23665364 TAAAAACCG
1 TAAAAATTA
*
23665373 TAAAAAATA
1 TAAAAATTA
23665382 TAAAAAATTGTA
1 T-AAAAA-T-TA
*
23665394 AAAAAATTA
1 TAAAAATTA
23665403 T-AAAATATA
1 TAAAAAT-TA
*
23665412 TAGAAA-TA
1 TAAAAATTA
*
23665420 TAAAAAATA
1 TAAAAATTA
23665429 TAAAA
1 TAAAA
23665434 TTTTATAAAG
Statistics
Matches: 121, Mismatches: 24, Indels: 34
0.68 0.13 0.19
Matches are distributed among these distances:
8 38 0.31
9 41 0.34
10 29 0.24
11 6 0.05
12 7 0.06
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.29
Consensus pattern (9 bp):
TAAAAATTA
Found at i:23665387 original size:10 final size:10
Alignment explanation
Indices: 23665374--23665433 Score: 54
Period size: 10 Copynumber: 6.3 Consensus size: 10
23665364 TAAAAACCGT
23665374 AAAAAATATA
1 AAAAAATATA
* *
23665384 AAAAATTGTA
1 AAAAAATATA
23665394 AAAAAAT-T-
1 AAAAAATATA
*
23665402 ATAAAATATA
1 AAAAAATATA
* *
23665412 TAGAAATAT-
1 AAAAAATATA
23665421 AAAAAATATA
1 AAAAAATATA
23665431 AAA
1 AAA
23665434 TTTTATAAAG
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
8 6 0.16
9 9 0.24
10 23 0.61
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (10 bp):
AAAAAATATA
Found at i:23665399 original size:47 final size:47
Alignment explanation
Indices: 23665330--23665442 Score: 115
Period size: 47 Copynumber: 2.4 Consensus size: 47
23665320 AAAAAAATTC
* * *
23665330 AAATATTAAAAATTTATTAAAAAATAGAAAA-ATATAAAAACCGTAAA
1 AAATATAAAAAATTTATAAAAAAATAGAAAATATATAAAAA-CATAAA
* * * *
23665377 AAATATAAAAAATTGTA-AAAAAATTATAAAATATATAGAAATATAAA
1 AAATATAAAAAATT-TATAAAAAAATAGAAAATATATAAAAACATAAA
*
23665424 AAATAT-AAAATTTTATAAA
1 AAATATAAAAAATTTATAAA
23665443 GTCGTAAGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.04
46 9 0.16
47 34 0.62
48 10 0.18
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (47 bp):
AAATATAAAAAATTTATAAAAAAATAGAAAATATATAAAAACATAAA
Found at i:23665426 original size:19 final size:19
Alignment explanation
Indices: 23665330--23665430 Score: 66
Period size: 18 Copynumber: 5.4 Consensus size: 19
23665320 AAAAAAATTC
*
23665330 AAATAT-TAAAAATTTATTAA
1 AAATATATAAAAA--TATAAA
*
23665350 AAA-ATAGAAAAATATAAA
1 AAATATATAAAAATATAAA
***
23665368 AACCGTA-AAAAATATAAA
1 AAATATATAAAAATATAAA
* * *
23665386 AAAT-TGTAAAAAAATTATA
1 AAATATATAAAAATA-TAAA
*
23665405 AAATATATAGAAATATAAA
1 AAATATATAAAAATATAAA
23665424 AAATATA
1 AAATATA
23665431 AAATTTTATA
Statistics
Matches: 63, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
17 1 0.02
18 26 0.41
19 21 0.33
20 15 0.24
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (19 bp):
AAATATATAAAAATATAAA
Found at i:23665667 original size:19 final size:19
Alignment explanation
Indices: 23665643--23665711 Score: 52
Period size: 19 Copynumber: 3.6 Consensus size: 19
23665633 ATTTTTTATG
23665643 ATTTTTATAAAATATTACA
1 ATTTTTATAAAATATTACA
*** *
23665662 ATTTTT-TATTTTTTTTACA
1 ATTTTTATA-AAATATTACA
*
23665681 ATTTTTATAAAAAATT-CTA
1 ATTTTTATAAAATATTAC-A
23665700 ATTTTTAATAAA
1 ATTTTT-ATAAA
23665712 TTTAATATTT
Statistics
Matches: 37, Mismatches: 9, Indels: 7
0.70 0.17 0.13
Matches are distributed among these distances:
18 3 0.08
19 27 0.73
20 7 0.19
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTTTATAAAATATTACA
Found at i:23678528 original size:30 final size:30
Alignment explanation
Indices: 23678492--23678570 Score: 113
Period size: 30 Copynumber: 2.6 Consensus size: 30
23678482 CTAACTAGGA
23678492 ATCTCCTCTTGGTCTCACTTAAGCATATAG
1 ATCTCCTCTTGGTCTCACTTAAGCATATAG
* *
23678522 ATCTCCTATTGGTCTCACTTAGGCATATAG
1 ATCTCCTCTTGGTCTCACTTAAGCATATAG
* * *
23678552 GTCTTCTCTCGGTCTCACT
1 ATCTCCTCTTGGTCTCACT
23678571 ATTCGGCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (30 bp):
ATCTCCTCTTGGTCTCACTTAAGCATATAG
Found at i:23686148 original size:16 final size:17
Alignment explanation
Indices: 23686121--23686155 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
23686111 TAAAATTGGG
*
23686121 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
23686138 TTGAG-AAATTAATTAA
1 TTGAGAAAATTAATTAA
23686154 TT
1 TT
23686156 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:23693608 original size:23 final size:23
Alignment explanation
Indices: 23693553--23693616 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 23
23693543 TAAAGGTTAA
* *
23693553 TGAATT-TATATATTTAATCATTC
1 TGAATTATATATATTAAAT-ATAC
23693576 T--ATTAT-TATATTAAATATAC
1 TGAATTATATATATTAAATATAC
*
23693596 TGAATTATATATATAAAATAT
1 TGAATTATATATATTAAATAT
23693617 TAAGTTATCG
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
20 4 0.12
21 12 0.35
22 6 0.18
23 12 0.35
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (23 bp):
TGAATTATATATATTAAATATAC
Found at i:23697402 original size:40 final size:40
Alignment explanation
Indices: 23697347--23697743 Score: 426
Period size: 40 Copynumber: 9.9 Consensus size: 40
23697337 AATTATTGTA
**
23697347 TGAATGCACATACGTGCCCCTAATTGTACTTCGGTACCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * * *
23697387 TGAATGTAGATACGTGCCTCTGATTGTACTTCGATATCCC-
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA-CCCT
*
23697427 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTATCCC-
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA-CCCT
* * * * * *
23697467 TAAATTCACATATGTGCCCCTATTTGTACTTTGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
23697507 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
*
23697547 T-AGATGCACATACGTGCCTCTGTTTGTACTTCGGTACCCT
1 TGA-ATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * * *
23697587 TGGATACACATACATGCCCCTGTTTGTACTTCAGTATCCT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
** * * *
23697627 TGAATGCACATACGTGCCTTTATTTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * *
23697667 T-AGATGCACATACATGTCCCTATTTGTACTTCAGTAACCC-
1 TGA-ATGCACATACGTGCCCCTGTTTGTACTTCGGT-ACCCT
* * *
23697707 TGAATGCACATACGTACCCTTGATTGTACTTCGGTAC
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTAC
23697744 TTATGAAGGC
Statistics
Matches: 297, Mismatches: 53, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
39 7 0.02
40 282 0.95
41 8 0.03
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCT
Found at i:23700115 original size:15 final size:16
Alignment explanation
Indices: 23700097--23700130 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
23700087 AAATTAAATT
*
23700097 AATTAA-CTAGATGCA
1 AATTAACCTAAATGCA
23700112 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
23700128 AAT
1 AAT
23700131 GAGATGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:23725256 original size:4 final size:4
Alignment explanation
Indices: 23725247--23725294 Score: 78
Period size: 4 Copynumber: 11.8 Consensus size: 4
23725237 GCTTCATGTT
*
23725247 TTTA TTTA TTTA CTTA TTTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
23725295 TTACAAACCC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
4 38 0.93
5 3 0.07
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:23726345 original size:23 final size:24
Alignment explanation
Indices: 23726298--23726343 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
23726288 GAAAAATATT
23726298 AAATATATATATTTTTTATTTTTA
1 AAATATATATATTTTTTATTTTTA
23726322 AAATATA-ATAGTTTTTTATTTT
1 AAATATATATA-TTTTTTATTTT
23726344 AAGTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATATATATTTTTTATTTTTA
Found at i:23726517 original size:9 final size:9
Alignment explanation
Indices: 23726505--23726532 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
23726495 TTTTATTACA
23726505 ACAATTAAT
1 ACAATTAAT
23726514 ACAATTAAT
1 ACAATTAAT
23726523 ACAATTAAT
1 ACAATTAAT
23726532 A
1 A
23726533 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:23726626 original size:16 final size:16
Alignment explanation
Indices: 23726605--23726645 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
23726595 AATAATTTGA
*
23726605 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
23726621 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
23726637 TAGTTTTAA
1 TAATTTTAA
23726646 GTTTATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:23726630 original size:22 final size:22
Alignment explanation
Indices: 23726620--23726680 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
23726610 TTACTAACAA
* * *
23726620 TTAATTTTAATAACAATTAGTT
1 TTAATTTTAATAAAAAATAATT
* *
23726642 TTAAGTTTATTAAAAAATAATT
1 TTAATTTTAATAAAAAATAATT
*
23726664 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
23726681 CGGGCCGGGC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (22 bp):
TTAATTTTAATAAAAAATAATT
Found at i:23726635 original size:59 final size:66
Alignment explanation
Indices: 23726407--23726638 Score: 307
Period size: 68 Copynumber: 3.5 Consensus size: 66
23726397 TCAAGTTTGT
* *
23726407 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATATAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTT-ATACAACAATTAATACAATTAATACAATTAATAATTTGAT
23726472 AAA
64 AAA
*
23726475 TTTACTAATCAAATGTTGGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTTA-TACAACAATTAATACAATTAATACAATTAATAATTTGAT
23726540 AAA
64 AAA
*
23726543 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATAGAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAA-GTTAGATTTTA-TACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
23726606 AAT
64 AAA
*
23726609 TTTACTAA-C-AA-TTA-ATTTTA-ATAACAATTA
1 TTTACTAATCAAAGTTAGATTTTATACAACAATTA
23726639 GTTTTAAGTT
Statistics
Matches: 156, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
59 9 0.06
61 6 0.04
62 3 0.02
64 2 0.01
65 1 0.01
66 27 0.17
67 1 0.01
68 107 0.69
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAAGTTAGATTTTATACAACAATTAATACAATTAATACAATTAATAATTTGATAA
A
Found at i:23727179 original size:4 final size:4
Alignment explanation
Indices: 23727161--23727219 Score: 68
Period size: 4 Copynumber: 14.2 Consensus size: 4
23727151 ATCTCCTCAC
23727161 ATTT -TTT ATTTT ATTT ATTTT ATTT ATTGT -TATT ATTT ATTT ATTT
1 ATTT ATTT A-TTT ATTT A-TTT ATTT ATT-T AT-TT ATTT ATTT ATTT
23727207 ATTT ATTT ATTT A
1 ATTT ATTT ATTT A
23727220 CATGTTCATT
Statistics
Matches: 49, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
3 3 0.06
4 35 0.71
5 11 0.22
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:23727213 original size:34 final size:36
Alignment explanation
Indices: 23727161--23727236 Score: 99
Period size: 34 Copynumber: 2.2 Consensus size: 36
23727151 ATCTCCTCAC
*
23727161 ATTT-TTTATTTTATTTATTTTATTTA-TTGTT-ATT
1 ATTTATTTATTTTATTTA-TTTATTTACATGTTCATT
23727195 ATTTATTTA-TTTATTTATTTATTTACATGTTCATT
1 ATTTATTTATTTTATTTATTTATTTACATGTTCATT
23727230 A-TTATTT
1 ATTTATTT
23727237 TAAAAGATCG
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
33 8 0.21
34 22 0.58
35 8 0.21
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (36 bp):
ATTTATTTATTTTATTTATTTATTTACATGTTCATT
Found at i:23732245 original size:7 final size:7
Alignment explanation
Indices: 23732233--23732276 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
23732223 GAATGTTTAA
23732233 AAAAAAG
1 AAAAAAG
23732240 AAAAAAAG
1 -AAAAAAG
23732248 AAAAAAG
1 AAAAAAG
23732255 --AAAA-
1 AAAAAAG
23732259 AAAAAAG
1 AAAAAAG
23732266 -AAAAAG
1 AAAAAAG
23732272 AAAAA
1 AAAAA
23732277 GGAGATGCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
5 4 0.12
6 10 0.31
7 11 0.34
8 7 0.22
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:23732251 original size:6 final size:6
Alignment explanation
Indices: 23732242--23732277 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
23732232 AAAAAAAGAA
23732242 AAAAAG AAAAAAG AAAAA- AAAAAG AAAAAG AAAAAG
1 AAAAAG -AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
23732278 GAGATGCCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.18
6 17 0.61
7 6 0.21
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:23732258 original size:24 final size:24
Alignment explanation
Indices: 23732231--23732276 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
23732221 AAGAATGTTT
23732231 AAAAAAAAGAA-AAAAAGAAAAAAG
1 AAAAAAAA-AAGAAAAAGAAAAAAG
23732255 AAAAAAAAAAGAAAAAGAAAAA
1 AAAAAAAAAAGAAAAAGAAAAA
23732277 GGAGATGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (24 bp):
AAAAAAAAAAGAAAAAGAAAAAAG
Found at i:23732271 original size:17 final size:18
Alignment explanation
Indices: 23732231--23732276 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
23732221 AAGAATGTTT
*
23732231 AAAAAA-AAGAAAAAAAG
1 AAAAAAGAAAAAAAAAAG
23732248 AAAAAAGAAAAAAAAAAG
1 AAAAAAGAAAAAAAAAAG
23732266 -AAAAAGAAAAA
1 AAAAAAGAAAAA
23732277 GGAGATGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 17 0.63
18 10 0.37
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAAAAAAAAAG
Found at i:23733263 original size:23 final size:23
Alignment explanation
Indices: 23733216--23733274 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
23733206 TTTATGTCCC
23733216 AAAATTACAGTGGACTGAACGTTG
1 AAAATTACAGT-GACTGAACGTTG
* * *
23733240 AAGATTACAGTGATTGAACTTTG
1 AAAATTACAGTGACTGAACGTTG
23733263 AAAATTACAGTG
1 AAAATTACAGTG
23733275 GGGAAGATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 21 0.68
24 10 0.32
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAATTACAGTGACTGAACGTTG
Found at i:23733932 original size:88 final size:87
Alignment explanation
Indices: 23733823--23734134 Score: 265
Period size: 88 Copynumber: 3.6 Consensus size: 87
23733813 TTGTAGATTT
* * * * * *
23733823 TATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGAGGGCAAATCTTATCTTCCCAAGGTAGTAAGG
1 TATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGTAAATCTTATCTTCCCAAGATAGT-AGG
*
23733888 AAGCAGATTTAAGCCACTAGTCC
65 AAGCAGATTTAAGCCACCAGTCC
* ** * * * **
23733911 TATCTCCCTAAGCAGCAGTGGAGTATG-TTGAAGATTGTAGATCTTGT-TT-TCTTGTACTAGTA
1 TATCTCCCTAAGCAGCAGTGGAGTA-GATCGAAGACGGTAAATCTTATCTTCCCAAG-A-TAGTA
* ** *
23733973 GTGAAGTAGATCGAAAG-CACCA-ACC
63 G-GAAGCAGAT-TTAAGCCACCAGTCC
* *
23733998 TTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGATAGTAGG
1 -TATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGTAAATCTTATCTTCCCAAGATAGTAGG
23734063 AAGCAGATTTAAGCCACCAGTCC
65 AAGCAGATTTAAGCCACCAGTCC
* * * * * ** *
23734086 TATCTCCCTGAGTAACAGTGGAGTAGGTTGAAGATTGTAGATCTTATCT
1 TATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGTAAATCTTATCT
23734135 CCCTAAGCAG
Statistics
Matches: 173, Mismatches: 40, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
86 5 0.03
87 60 0.35
88 99 0.57
89 7 0.04
90 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (87 bp):
TATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGTAAATCTTATCTTCCCAAGATAGTAGGA
AGCAGATTTAAGCCACCAGTCC
Found at i:23734174 original size:44 final size:44
Alignment explanation
Indices: 23733997--23734176 Score: 109
Period size: 44 Copynumber: 4.1 Consensus size: 44
23733987 AAGCACCAAC
*
23733997 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGTGAAT
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAAT
* * * ** ** * *
23734041 CTTATCTTCCC-GAG-A-TAGTAGGAAGCAGATTTAAG-CCACCAGT
1 CTTATC-TCCCTAAGCAGCAGT-GG-AGTAGATCGAAGACGGCGAAT
* * * * * * ** *
23734084 CCTATCTCCCTGAGTAACAGTGGAGTAGGTTGAAGATTG-TAGAT
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGA-AT
*
23734128 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAAT
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAAT
23734172 CTTAT
1 CTTAT
23734177 TTTTCAAAGA
Statistics
Matches: 97, Mismatches: 30, Indels: 18
0.67 0.21 0.12
Matches are distributed among these distances:
42 7 0.07
43 24 0.25
44 58 0.60
45 8 0.08
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAAT
Found at i:23734259 original size:131 final size:131
Alignment explanation
Indices: 23733997--23734266 Score: 391
Period size: 131 Copynumber: 2.1 Consensus size: 131
23733987 AAGCACCAAC
* **
23733997 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGTGAATCTTATCTTCCCGAGATAGTAG
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCAAAGATAGTAG
* * ***
23734062 GAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGTAACAGTGGAGTAGGTTGAAGATTGTAGA
66 GAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGTAACAGTGGAGTAGGTTGAAAATCACAGA
23734127 T
131 T
* * *
23734128 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATTTTTCAAAGATAGTAG
1 CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCAAAGATAGTAG
**
23734193 GAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAAGTGGCAGTGGAGT-GGATT-AAAATCACA
66 GAAGCAGATTTAAGCCACCAATCCTATCTCCCTG-AGTAACAGTGGAGTAGG-TTGAAAATCACA
23734256 GAT
129 GAT
23734259 CTTATCTC
1 CTTATCTC
23734267 TTTGAAGTTG
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
131 110 0.89
132 14 0.11
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (131 bp):
CTTATCTCCCTAAGCAGCAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCAAAGATAGTAG
GAAGCAGATTTAAGCCACCAATCCTATCTCCCTGAGTAACAGTGGAGTAGGTTGAAAATCACAGA
T
Found at i:23734291 original size:44 final size:43
Alignment explanation
Indices: 23734217--23734585 Score: 183
Period size: 44 Copynumber: 8.6 Consensus size: 43
23734207 CCACCAATCC
* **
23734217 TATCTCCCTGAAGTGGCAGTGGAGTGGATTAAAATCACAGATCT
1 TATCTCCCT-AAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
** * *
23734261 TATCTCTTTGAAGTTGCAGTAGAGCAGATT-ACATC-CAG-TCT
1 TATCTCCCT-AAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
** * ** *
23734302 TATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAATCA-A-TTC-
1 TATCTCCCTAAGTTGCAGTGGAGCAG--ATTA-AAATCACAGATCT
*
23734345 TATCTCCCTAACGTTGCAGTGGAGCAGATTAAAACCACAGATCT
1 TATCTCCCTAA-GTTGCAGTGGAGCAGATTAAAATCACAGATCT
* * * *
23734389 TATCTCTCTAAAGTTGCAGTAGAGCAGA-TCACATC-CAG-TCT
1 TATCTCCCT-AAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
*** * * * *
23734430 TATCTCCCTAAACAGTAGTGGAGCAGA-CAGAAGA-AATCA-ATCC
1 TATCTCCCTAAGTTGCAGTGGAGCAGATTA-AA-ATCA-CAGATCT
* * * * *
23734473 TATCTCCCCGACGTTGCAGTGGAGCGGATTAAAACCATAGATCT
1 TATCT-CCCTAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
* * * * ***
23734517 TATCTCTCTGAAGTTGTAGTAGAGTAGA-TCGCATC-CAG-TCT
1 TATCTCCCT-AAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
23734558 TATCTCCCTGAAGTTGCAGTGGAGCAGA
1 TATCTCCCT-AAGTTGCAGTGGAGCAGA
23734586 CTGAAGCTAC
Statistics
Matches: 238, Mismatches: 66, Indels: 45
0.68 0.19 0.13
Matches are distributed among these distances:
40 26 0.11
41 54 0.23
42 13 0.05
43 37 0.16
44 105 0.44
45 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (43 bp):
TATCTCCCTAAGTTGCAGTGGAGCAGATTAAAATCACAGATCT
Found at i:23734364 original size:128 final size:128
Alignment explanation
Indices: 23734211--23734636 Score: 595
Period size: 128 Copynumber: 3.3 Consensus size: 128
23734201 TTTAAGCCAC
* * * *
23734211 CAATCCTATCTCCCTGAA-GTGGCAGTGGAGTGGATTAAAATCACAGATCTTATCTCTTTGAAGT
1 CAATCCTATCTCCCT-AACGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGT
*
23734275 TGCAGTAGAGCAGATTACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
65 TGCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
* * *
23734339 CAATTCTATCTCCCTAACGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTAAAGTT
1 CAATCCTATCTCCCTAACGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
*
23734404 GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAACAGTAGTGGAGCAGACAGAAGAAAT
66 GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
** *
23734467 CAATCCTATCTCCCCGACGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTAACGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * ** * * **
23734532 GTAGTAGAGTAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGCTA-
66 GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCT-AAGCAGTAGTGGAGCAGACAGAAGAAAT
* * *
23734595 CTAATCCTATCTCCCTAAAGTTGTAGTGGAGAGGATTAAAAC
1 C-AATCCTATCTCCCTAACGTTGCAGTGGAGCGGATTAAAAC
23734637 GATGAATCCT
Statistics
Matches: 265, Mismatches: 30, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
127 2 0.01
128 208 0.78
129 55 0.21
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (128 bp):
CAATCCTATCTCCCTAACGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAGAAAT
Found at i:23735482 original size:4 final size:4
Alignment explanation
Indices: 23735473--23735508 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
23735463 GCTTCTTGTT
*
23735473 TTTA TTTA TTTA CTTA TTTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTT
23735509 TTACATACCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 26 0.90
5 3 0.10
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:23735494 original size:17 final size:17
Alignment explanation
Indices: 23735472--23735509 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
23735462 TGCTTCTTGT
23735472 TTTTATTTATTTACTTA
1 TTTTATTTATTTACTTA
*
23735489 TTTTATTTATTTATTTA
1 TTTTATTTATTTACTTA
23735506 TTTT
1 TTTT
23735510 TACATACCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTATTTATTTACTTA
Found at i:23736636 original size:16 final size:15
Alignment explanation
Indices: 23736612--23736641 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
23736602 CTTATATTTT
23736612 TTATTTTATTTATTG
1 TTATTTTATTTATTG
23736627 TTATTATTATTTATT
1 TTATT-TTATTTATT
23736642 TATTTACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (15 bp):
TTATTTTATTTATTG
Found at i:23737713 original size:18 final size:17
Alignment explanation
Indices: 23737692--23737726 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23737682 TTATTATTAA
*
23737692 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23737710 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23737727 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23737840 original size:14 final size:15
Alignment explanation
Indices: 23737791--23737842 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23737781 GTAAAATATA
23737791 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
23737806 TATTAAATATATTAT
1 AATTAAATATATTAT
23737821 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
23737834 AATTTAATA
1 AATTAAATA
23737843 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:23737888 original size:120 final size:120
Alignment explanation
Indices: 23737675--23738207 Score: 928
Period size: 120 Copynumber: 4.4 Consensus size: 120
23737665 ATCATATTTA
23737675 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23737740 TATTCTTATATGAGTTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
23737795 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
23737860 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
23737915 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
23737980 TATTCTTATATGAATTTACTCAAATCATAATATATAATATTGTAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
23738035 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
23738100 TATTCTTGTATGAATTTACTCAAATCATAATATATGATACTAT-AAATGA-AAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAAT-ATAAA-TT
* *
23738155 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
23738208 TAAAATAGTT
Statistics
Matches: 396, Mismatches: 14, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
119 7 0.02
120 387 0.98
121 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:23737953 original size:18 final size:17
Alignment explanation
Indices: 23737932--23737966 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23737922 TTATTATTAA
*
23737932 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23737950 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23737967 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23738073 original size:18 final size:18
Alignment explanation
Indices: 23738052--23738099 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
23738042 TTATTATTAA
23738052 ATATATTATAATTAAAAT
1 ATATATTATAATTAAAAT
23738070 ATATAATT-TAA-TAAAAT
1 ATAT-ATTATAATTAAAAT
*
23738087 -TAT-TAATAATTAA
1 ATATATTATAATTAA
23738100 TATTCTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 3 0.12
16 6 0.23
17 6 0.23
18 7 0.27
19 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATATTATAATTAAAAT
Found at i:23738080 original size:14 final size:15
Alignment explanation
Indices: 23738031--23738082 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23738021 GTAAAATATA
23738031 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
23738046 TATTAAATATATTAT
1 AATTAAATATATTAT
23738061 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
23738074 AATTTAATA
1 AATTAAATA
23738083 AAATTATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:23738319 original size:92 final size:91
Alignment explanation
Indices: 23738223--23738400 Score: 232
Period size: 92 Copynumber: 1.9 Consensus size: 91
23738213 TAGTTATAAC
* * * * * *
23738223 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTTATGA
1 TAATAAATTATATTATATGAATTTATACAATTAAAAATAATTAA-TATTAAATATAATTTAAT-A
* *
23738287 TTAATATTTAATTTCATAAAATTCTTGG
64 CTAATATATAATTTCATAAAATTCTTGG
* *
23738315 TAATAAATTTTCTTATATGAATTTATACAATTAAAAATAATTAATATTAAATATAATTTAATACT
1 TAATAAATTATATTATATGAATTTATACAATTAAAAATAATTAATATTAAATATAATTTAATACT
*
23738380 GATATATAATTTCATAAAATT
66 AATATATAATTTCATAAAATT
23738401 ATTTTTAATA
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
91 21 0.28
92 50 0.68
93 3 0.04
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTAAAAATAATTAATATTAAATATAATTTAATACT
AATATATAATTTCATAAAATTCTTGG
Found at i:23738365 original size:16 final size:17
Alignment explanation
Indices: 23738344--23738377 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
23738334 AATTTATACA
23738344 ATTAAAAATAA-TTAAT
1 ATTAAAAATAATTTAAT
*
23738360 ATTAAATATAATTTAAT
1 ATTAAAAATAATTTAAT
23738377 A
1 A
23738378 CTGATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTAAAAATAATTTAAT
Found at i:23740255 original size:20 final size:20
Alignment explanation
Indices: 23740230--23740270 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
23740220 CCACTCGTTC
23740230 AGATGATATCGATGTCCTCT
1 AGATGATATCGATGTCCTCT
*
23740250 AGATGATATCGCTGTCCTCT
1 AGATGATATCGATGTCCTCT
23740270 A
1 A
23740271 AATCATTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (20 bp):
AGATGATATCGATGTCCTCT
Found at i:23746520 original size:24 final size:24
Alignment explanation
Indices: 23746493--23746540 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
23746483 TATTGGAAGA
23746493 TACATTTTAATATTTTATTAAATG
1 TACATTTTAATATTTTATTAAATG
23746517 TACATTTTAATATTTTATTAAATG
1 TACATTTTAATATTTTATTAAATG
23746541 GATTTATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (24 bp):
TACATTTTAATATTTTATTAAATG
Found at i:23746697 original size:21 final size:21
Alignment explanation
Indices: 23746673--23746725 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
23746663 CATTGTTTCT
*
23746673 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
23746694 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
*
23746715 AATCTTACCGC
1 AATCTCACCGC
23746726 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:23746814 original size:21 final size:21
Alignment explanation
Indices: 23746788--23746843 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
23746778 AATAGCGGTG
*
23746788 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
*
23746809 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
23746830 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
23746844 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:23751716 original size:33 final size:33
Alignment explanation
Indices: 23751651--23751716 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
23751641 TAATCACTGT
* *
23751651 TTTTGTTCTCAAATATGAAAAACAAAATGGTTG
1 TTTTGTTCCCAAATATGAAAAACAAAAAGGTTG
*
23751684 TTTTGTTCCCAAATTTG-AAAACAAATAAGGTTG
1 TTTTGTTCCCAAATATGAAAAACAAA-AAGGTTG
23751717 GAAAGAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 8 0.28
33 21 0.72
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (33 bp):
TTTTGTTCCCAAATATGAAAAACAAAAAGGTTG
Found at i:23754115 original size:20 final size:20
Alignment explanation
Indices: 23754090--23754140 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 20
23754080 TTCGTTTAGT
23754090 TATTTATTTATTATTTTGAA
1 TATTTATTTATTATTTTGAA
23754110 TATTTATTATTATTATTTTGAA
1 TATTTA-T-TTATTATTTTGAA
23754132 TAATTTATT
1 T-ATTTATT
23754141 ATTTGTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.21
21 2 0.07
22 15 0.54
23 5 0.18
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
TATTTATTTATTATTTTGAA
Found at i:23754119 original size:23 final size:24
Alignment explanation
Indices: 23754093--23754175 Score: 109
Period size: 23 Copynumber: 3.6 Consensus size: 24
23754083 GTTTAGTTAT
23754093 TTATTTATTATTTTGAAT-ATTTA
1 TTATTTATTATTTTGAATAATTTA
23754116 TTA-TTATTATTTTGAATAATTTA
1 TTATTTATTATTTTGAATAATTTA
* *
23754139 TTATTTGTT-TTTTTAATAATTTA
1 TTATTTATTATTTTGAATAATTTA
* *
23754162 TTCTTTGTTATTTT
1 TTATTTATTATTTT
23754176 CTTTGTTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
22 14 0.26
23 32 0.59
24 8 0.15
ACGTcount: A:0.27, C:0.01, G:0.05, T:0.67
Consensus pattern (24 bp):
TTATTTATTATTTTGAATAATTTA
Found at i:23754417 original size:49 final size:48
Alignment explanation
Indices: 23754359--23754464 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
23754349 TATGGTCATA
* * * **
23754359 GGTTGAAGTATAACTAGGGCTCCCAGTTGACGGTGGTTATGCAATCACG
1 GGTTCAAGTATAACCA-GGCCCCCAACTGACGGTGGTTATGCAATCACG
* * * *
23754408 TGTTCAAGTATAACCAGGCCCCCAACTGGCGGTGGTTATGCGATTACG
1 GGTTCAAGTATAACCAGGCCCCCAACTGACGGTGGTTATGCAATCACG
23754456 GGTTCAAGT
1 GGTTCAAGT
23754465 TTCATGTCAC
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
48 34 0.72
49 13 0.28
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (48 bp):
GGTTCAAGTATAACCAGGCCCCCAACTGACGGTGGTTATGCAATCACG
Found at i:23755039 original size:49 final size:49
Alignment explanation
Indices: 23754967--23755090 Score: 133
Period size: 49 Copynumber: 2.5 Consensus size: 49
23754957 GTGGCATGAA
* * *
23754967 ACTTGAACCCATGATCT-CATAACCACTATTAACTGATGGCCCGACTTAT
1 ACTTGAACCCATGAT-TGTATAACCACTATCAACTGATAGCCCGACTTAT
* * * * *
23755016 ACTTGAACCCGTGATTGTATAACCACTGTCAACTGGTAGCCCTAGTTAT
1 ACTTGAACCCATGATTGTATAACCACTATCAACTGATAGCCCGACTTAT
* * *
23755065 CCTTCAATCCATGATTGTATAACCAC
1 ACTTGAACCCATGATTGTATAACCAC
23755091 CGTGAACTAA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
48 1 0.02
49 61 0.98
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (49 bp):
ACTTGAACCCATGATTGTATAACCACTATCAACTGATAGCCCGACTTAT
Found at i:23756405 original size:28 final size:27
Alignment explanation
Indices: 23756359--23756419 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
23756349 TCTGCTCGAA
*
23756359 TATATTATGTTATAAAATATTATATTAAT
1 TATA-TATGTTATAAAATAATATA-TAAT
*
23756388 TATATATGTTA-AATAATAATATATATT
1 TATATATGTTATAA-AATAATATATAAT
23756415 TATAT
1 TATAT
23756420 TAAATCATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 10 0.34
28 15 0.52
29 4 0.14
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (27 bp):
TATATATGTTATAAAATAATATATAAT
Found at i:23759434 original size:8 final size:8
Alignment explanation
Indices: 23759421--23759458 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
23759411 GTTCATCATT
23759421 ATGAATTG
1 ATGAATTG
23759429 ATGAATTG
1 ATGAATTG
23759437 ATGAATTG
1 ATGAATTG
23759445 ATGAATTG
1 ATGAATTG
23759453 AT-AATT
1 ATGAATT
23759459 AATTAAGGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 4 0.13
8 26 0.87
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (8 bp):
ATGAATTG
Found at i:23760916 original size:20 final size:21
Alignment explanation
Indices: 23760873--23760917 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
23760863 TTTAAATACG
* *
23760873 TATTTCATTTTTATAAATTAT
1 TATTGCATTTCTATAAATTAT
*
23760894 TATTGCATTTCTA-AAATTTT
1 TATTGCATTTCTATAAATTAT
23760914 TATT
1 TATT
23760918 TAAAGTTAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTGCATTTCTATAAATTAT
Found at i:23762677 original size:44 final size:44
Alignment explanation
Indices: 23762627--23762716 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
23762617 ACTTAGAGGG
23762627 ATTTGGGCTAACATTCCTGTTGATTTGAGTTCCTTGAGAAGATC
1 ATTTGGGCTAACATTCCTGTTGATTTGAGTTCCTTGAGAAGATC
23762671 ATTTGGGCTAACATTCCTGTTGATTTGAGTTCCTTGAGAAGATC
1 ATTTGGGCTAACATTCCTGTTGATTTGAGTTCCTTGAGAAGATC
23762715 AT
1 AT
23762717 CTTTTAACCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.39
Consensus pattern (44 bp):
ATTTGGGCTAACATTCCTGTTGATTTGAGTTCCTTGAGAAGATC
Found at i:23762857 original size:13 final size:13
Alignment explanation
Indices: 23762839--23762864 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23762829 CTTGAATCTT
23762839 ATAAAAATTGTTC
1 ATAAAAATTGTTC
23762852 ATAAAAATTGTTC
1 ATAAAAATTGTTC
23762865 TTATCAGTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
ATAAAAATTGTTC
Found at i:23764203 original size:172 final size:172
Alignment explanation
Indices: 23763917--23764264 Score: 696
Period size: 172 Copynumber: 2.0 Consensus size: 172
23763907 CCCTTTGGCT
23763917 GTAAGATTCTGAGAAGTATTTTGCTTCAGTGAAATTGCATGATCTTGTATTCTAATGAGGTCAAA
1 GTAAGATTCTGAGAAGTATTTTGCTTCAGTGAAATTGCATGATCTTGTATTCTAATGAGGTCAAA
23763982 CCGGCAATAGTCAGGGCCATCCAAGAAATGTTACCTTGGATCTGAGCTAGTAGTTAAATGGTTGA
66 CCGGCAATAGTCAGGGCCATCCAAGAAATGTTACCTTGGATCTGAGCTAGTAGTTAAATGGTTGA
23764047 GCATTTAGGTTGTAGGGTCTAATACAAAATCAAAATCTCCAA
131 GCATTTAGGTTGTAGGGTCTAATACAAAATCAAAATCTCCAA
23764089 GTAAGATTCTGAGAAGTATTTTGCTTCAGTGAAATTGCATGATCTTGTATTCTAATGAGGTCAAA
1 GTAAGATTCTGAGAAGTATTTTGCTTCAGTGAAATTGCATGATCTTGTATTCTAATGAGGTCAAA
23764154 CCGGCAATAGTCAGGGCCATCCAAGAAATGTTACCTTGGATCTGAGCTAGTAGTTAAATGGTTGA
66 CCGGCAATAGTCAGGGCCATCCAAGAAATGTTACCTTGGATCTGAGCTAGTAGTTAAATGGTTGA
23764219 GCATTTAGGTTGTAGGGTCTAATACAAAATCAAAATCTCCAA
131 GCATTTAGGTTGTAGGGTCTAATACAAAATCAAAATCTCCAA
23764261 GTAA
1 GTAA
23764265 TGAGTATGTG
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
172 176 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (172 bp):
GTAAGATTCTGAGAAGTATTTTGCTTCAGTGAAATTGCATGATCTTGTATTCTAATGAGGTCAAA
CCGGCAATAGTCAGGGCCATCCAAGAAATGTTACCTTGGATCTGAGCTAGTAGTTAAATGGTTGA
GCATTTAGGTTGTAGGGTCTAATACAAAATCAAAATCTCCAA
Found at i:23767812 original size:22 final size:23
Alignment explanation
Indices: 23767782--23767835 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
23767772 TTGTATTAGT
* *
23767782 TTACCAAATTAAAC-TTAAAATA
1 TTACTAAATTAAACATTAAAAAA
* *
23767804 TTACTAAATTTATCATTAAAAAA
1 TTACTAAATTAAACATTAAAAAA
23767827 TTA-TAAATT
1 TTACTAAATT
23767836 TTATAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 17 0.63
23 10 0.37
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (23 bp):
TTACTAAATTAAACATTAAAAAA
Found at i:23768094 original size:14 final size:16
Alignment explanation
Indices: 23768063--23768094 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
23768053 TTTTCTGAAA
23768063 ATAATTTTCCAGATGT
1 ATAATTTTCCAGATGT
23768079 ATAA-TTTCCA-ATGT
1 ATAATTTTCCAGATGT
23768093 AT
1 AT
23768095 CCATTGTGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 6 0.38
16 4 0.25
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.44
Consensus pattern (16 bp):
ATAATTTTCCAGATGT
Found at i:23770987 original size:16 final size:16
Alignment explanation
Indices: 23770965--23771032 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
23770955 TTTGGTTCGC
23770965 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
23770981 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23770997 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23771013 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23771029 TGTA
1 TGTA
23771033 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.25, C:0.01, G:0.37, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23771097 original size:44 final size:45
Alignment explanation
Indices: 23771013--23771103 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
23771003 GGATTAGAGG
* * *
23771013 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
23771058 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
23771102 TG
1 TG
23771104 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:23771285 original size:16 final size:16
Alignment explanation
Indices: 23771248--23771289 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23771238 TTAATCATAT
*
23771248 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23771264 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23771279 TTAAAATATAT
1 TTAAAATATAT
23771290 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23771296 original size:14 final size:15
Alignment explanation
Indices: 23771257--23771298 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23771247 TTTAAACATA
*
23771257 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23771272 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23771286 A-TATAATTTAATA
1 ATTATAATTAAATA
23771299 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23771388 original size:120 final size:120
Alignment explanation
Indices: 23771251--23771633 Score: 730
Period size: 120 Copynumber: 3.2 Consensus size: 120
23771241 ATCATATTTA
*
23771251 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
23771316 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
23771371 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
23771436 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
*
23771491 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23771556 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
23771611 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
23771634 AACTTGAAAA
Statistics
Matches: 258, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 258 1.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:23771983 original size:18 final size:18
Alignment explanation
Indices: 23771960--23772019 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
23771950 TTAAAACAAG
23771960 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
23771978 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
23771995 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
23772013 TTACATT
1 TTACATT
23772020 AGAATTACAT
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 14 0.48
19 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:23773481 original size:33 final size:33
Alignment explanation
Indices: 23773439--23773504 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
23773429 TTCTTCAAGA
23773439 AGCAGAACAAGGCGAAACATGTCAATCTAAGGG
1 AGCAGAACAAGGCGAAACATGTCAATCTAAGGG
23773472 AGCAGAACAAGGCGAAACATGTCAATCTAAGGG
1 AGCAGAACAAGGCGAAACATGTCAATCTAAGGG
23773505 CCTTGGAGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.18, G:0.27, T:0.12
Consensus pattern (33 bp):
AGCAGAACAAGGCGAAACATGTCAATCTAAGGG
Found at i:23775358 original size:14 final size:15
Alignment explanation
Indices: 23775308--23775358 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
23775298 ATTTTGAGCA
*
23775308 ATTTATTTTATCTTTT
1 ATTT-TTTTAACTTTT
*
23775324 ATGTTTTTTAACTTTC
1 AT-TTTTTTAACTTTT
*
23775340 CTTTTTTTAA-TTTT
1 ATTTTTTTAACTTTT
23775354 ATTTT
1 ATTTT
23775359 CCAGTATCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
14 7 0.24
15 8 0.28
16 12 0.41
17 2 0.07
ACGTcount: A:0.18, C:0.08, G:0.02, T:0.73
Consensus pattern (15 bp):
ATTTTTTTAACTTTT
Found at i:23783663 original size:17 final size:18
Alignment explanation
Indices: 23783632--23783667 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
23783622 CAAAAATCAC
23783632 TTAACAACACAAGTTTAT
1 TTAACAACACAAGTTTAT
23783650 TTAACAAC-CAAGTTTAT
1 TTAACAACACAAGTTTAT
23783667 T
1 T
23783668 AATATATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.42, C:0.17, G:0.06, T:0.36
Consensus pattern (18 bp):
TTAACAACACAAGTTTAT
Found at i:23790254 original size:18 final size:17
Alignment explanation
Indices: 23790221--23790259 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
23790211 TTTTATAAAT
23790221 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
23790239 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
23790256 TGTG
1 TGTG
23790260 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:23790391 original size:8 final size:8
Alignment explanation
Indices: 23790378--23790406 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
23790368 CACTAGAGAC
23790378 CAGTGTTA
1 CAGTGTTA
23790386 CAGTGTTA
1 CAGTGTTA
23790394 CAGTGTTA
1 CAGTGTTA
23790402 CAGTG
1 CAGTG
23790407 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:23790519 original size:23 final size:23
Alignment explanation
Indices: 23790493--23790568 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
23790483 AGTGTTATTG
23790493 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
23790516 ATCAGTGGTAGCTACAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23790539 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
23790562 ATCAGTG
1 ATCAGTG
23790569 TGGTACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:23798855 original size:17 final size:18
Alignment explanation
Indices: 23798825--23798858 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
23798815 CAAAAATCAC
23798825 TTAACAACACAAGTTTAT
1 TTAACAACACAAGTTTAT
23798843 TTAACAA-ACAAGTTTA
1 TTAACAACACAAGTTTA
23798859 ATAATCTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (18 bp):
TTAACAACACAAGTTTAT
Found at i:23807872 original size:9 final size:9
Alignment explanation
Indices: 23807858--23807897 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
23807848 TATGTTATTA
23807858 AAACTAATT
1 AAACTAATT
23807867 AAACTAGATT
1 AAACTA-ATT
*
23807877 AAATTAATT
1 AAACTAATT
23807886 AAACTAAGTT
1 AAACTAA-TT
23807896 AA
1 AA
23807898 TTAAGGTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
9 15 0.56
10 12 0.44
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (9 bp):
AAACTAATT
Found at i:23807897 original size:19 final size:18
Alignment explanation
Indices: 23807862--23807901 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
23807852 TTATTAAAAC
23807862 TAATTAAACTAGATTAAAT
1 TAATTAAACTAGATT-AAT
23807881 TAATTAAACTA-AGTTAAT
1 TAATTAAACTAGA-TTAAT
23807899 TAA
1 TAA
23807902 GGTATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (18 bp):
TAATTAAACTAGATTAAT
Found at i:23810381 original size:79 final size:80
Alignment explanation
Indices: 23810248--23810429 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
23810238 AATGATGTCC
* *
23810248 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
23810313 CGAGATACTAATTCT
66 CGAGATACTAATTCT
* * * **
23810328 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTG
* * *
23810390 TGCGAGTTACT-ATAACC
64 TGCGAGATACTAAT-TCT
*
23810407 GGGCTATGTCCCGAAGGCGTTTG
1 GGGCTAAGTCCCGAAGGC-TTTG
23810430 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 55 0.64
80 28 0.33
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
CGAGATACTAATTCT
Found at i:23810436 original size:40 final size:40
Alignment explanation
Indices: 23810245--23810429 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
23810235 TTGAATGATG
* * * *
23810245 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
23810285 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23810325 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23810364 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
23810405 -CCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23810430 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23810451 original size:79 final size:79
Alignment explanation
Indices: 23810298--23810462 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
23810288 GGACTAAGAT
* * * **
23810298 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
23810363 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
23810377 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCGTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
23810440 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
23810456 CCGAAGG
1 CCGAAGG
23810463 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:23815563 original size:27 final size:27
Alignment explanation
Indices: 23815436--23815566 Score: 102
Period size: 27 Copynumber: 4.9 Consensus size: 27
23815426 ATAGTTCACC
* *
23815436 GGGACAGTAAACACGTGATAGTTCGTT
1 GGGACAGTAAACACGGGGTAGTTCGTT
* * * * ** *
23815463 AGGATAGTAAATACAGAATAG-TCTGCT
1 GGGACAGTAAACACGGGGTAGTTC-GTT
* *
23815490 GGGATAGTAAACACGGGGTAGTTCGTC
1 GGGACAGTAAACACGGGGTAGTTCGTT
* * **
23815517 GGGTCAATAAACACATGGTAGTTCGTT
1 GGGACAGTAAACACGGGGTAGTTCGTT
*
23815544 GGGACAGTAAACATGGGGTAGTT
1 GGGACAGTAAACACGGGGTAGTT
23815567 TATCAGGATA
Statistics
Matches: 77, Mismatches: 25, Indels: 4
0.73 0.24 0.04
Matches are distributed among these distances:
26 2 0.03
27 73 0.95
28 2 0.03
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (27 bp):
GGGACAGTAAACACGGGGTAGTTCGTT
Done.