Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 86 of 189
Found at i:23825972 original size:16 final size:16
Alignment explanation
Indices: 23825951--23825987 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
23825941 TTGGTTCGCT
23825951 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
*
23825967 GTAATGGATTAGAGGC
1 GTAATGGAATAGAGGC
23825983 GTAAT
1 GTAAT
23825988 AGCAATTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.35, T:0.24
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:23826031 original size:45 final size:44
Alignment explanation
Indices: 23825967--23826063 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 44
23825957 GAATAGAGGC
*
23825967 GTAATGGATTAGAGGCGTAATAGCAATTCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAG-AATTC-ATGTGTTTGGTTGAAT
* *
23826012 GTAATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAAT
*
23826056 GGAATGGA
1 GTAATGGA
23826064 GGTGTAATAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 1 0.02
44 24 0.51
45 22 0.47
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGAATTCATGTGTTTGGTTGAAT
Found at i:23826247 original size:18 final size:17
Alignment explanation
Indices: 23826221--23826260 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
23826211 CATAATTATT
23826221 ATAAAATATAT--TTTA
1 ATAAAATATATAATTTA
23826236 ATTAAAATATATAATTTA
1 A-TAAAATATATAATTTA
23826254 ATAAAAT
1 ATAAAAT
23826261 TCTTAGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.05
16 10 0.45
17 6 0.27
18 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
ATAAAATATATAATTTA
Found at i:23826306 original size:61 final size:61
Alignment explanation
Indices: 23826241--23826431 Score: 212
Period size: 61 Copynumber: 3.2 Consensus size: 61
23826231 TTTTAATTAA
* *
23826241 AATATATAATTTAATAAAATTCTTAGTATTAAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTACTAAAATCAT
* * ** * * ** * *
23826302 AATATATAATACT-ATAAAA-T-ATAAT-TTAAAATAATAATTAT-TAAATATAATTTAATAAA
1 AATATATAAT-TTAATAAAATTCTTAATATT-AAAT-ATTCTTATATAAATTTACTAAAATCAT
23826361 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTACTAAAATCAT
1 AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTACTAAAATCAT
23826422 AATATATAAT
1 AATATATAAT
23826432 ACTATAAAAT
Statistics
Matches: 100, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
58 3 0.03
59 34 0.34
60 14 0.14
61 46 0.46
62 3 0.03
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATAAATTTACTAAAATCAT
Found at i:23826340 original size:13 final size:12
Alignment explanation
Indices: 23826316--23826356 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
23826306 TATAATACTA
23826316 TAAAATATAATT
1 TAAAATATAATT
23826328 TAAAATAATAATT
1 TAAAAT-ATAATT
*
23826341 ATTAAATATAATT
1 -TAAAATATAATT
23826354 TAA
1 TAA
23826357 TAAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:23826378 original size:59 final size:59
Alignment explanation
Indices: 23826302--23826490 Score: 213
Period size: 59 Copynumber: 3.2 Consensus size: 59
23826292 CTAAAATCAT
*
23826302 AATATATAATACTATAAAATATAATTTAAAATAATAATTATTAAATATAATTTAATAAA
1 AATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAA
* * * * * ** * *
23826361 AATATATAAT-TTAATAAAATTCTTAATATT-AAAT-ATTCTTATATAAATTTACTAAAATCAT
1 AATATATAATACT-ATAAAA-T-ATAAT-TTAAAATAATTATTAT-TAAATATAATTTAATAAA
*
23826422 AATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAGA
1 AATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAA
23826481 AATATATAAT
1 AATATATAAT
23826491 TTACATTTAT
Statistics
Matches: 102, Mismatches: 20, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
58 3 0.03
59 45 0.44
60 15 0.15
61 36 0.35
62 3 0.03
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (59 bp):
AATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAA
Found at i:23826419 original size:120 final size:120
Alignment explanation
Indices: 23826206--23826493 Score: 504
Period size: 120 Copynumber: 2.4 Consensus size: 120
23826196 TTAATCATAT
* * * * *
23826206 TTTAACATAATTATTATAAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAGTATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
*
23826271 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATAAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
23826326 TTTAAAATAATAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
23826391 AAATATTCTTATATAAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATAAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
23826446 TTTAAAATAATTATTATTAAATATAATTTAATAGAAATATATAATTTA
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTA
23826494 CATTTATTGC
Statistics
Matches: 159, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 159 1.00
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
AAATATTCTTATATAAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:23830084 original size:50 final size:50
Alignment explanation
Indices: 23829969--23830211 Score: 371
Period size: 50 Copynumber: 4.8 Consensus size: 50
23829959 GATTATAACA
* * * ** *
23829969 TGCCAAAGCCATGTCCCAGACAAGGTCTTACATGAGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
23830020 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
23830070 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
23830120 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
23830170 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGG-CCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG-GGACCTCT
23830212 TTACCCAAAT
Statistics
Matches: 178, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
50 145 0.81
51 33 0.19
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.24
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:23832582 original size:50 final size:50
Alignment explanation
Indices: 23832467--23832651 Score: 262
Period size: 50 Copynumber: 3.7 Consensus size: 50
23832457 GATAATAACA
* * ** *
23832467 TGCCAAAGCCATGTCCCAGACAAGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * **
23832518 TGCCCATGCCATGTCCCAGACATTGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
23832568 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
23832618 TGCCAACGCCATGTCCCAGACATGGTCTTACATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG
23832652 ATACCTCTTT
Statistics
Matches: 118, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 87 0.74
51 31 0.26
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:23833944 original size:4 final size:4
Alignment explanation
Indices: 23833935--23833998 Score: 50
Period size: 4 Copynumber: 17.5 Consensus size: 4
23833925 GCCCTTCTCT
* *
23833935 TTTA TTTA TTT- TGT- TTTA TTTA TTTA TTTA -TTA TTT- CTTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* *
23833978 TTTG TTTA -TTA TTTG TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TT
23833999 ATTATTTGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
3 15 0.31
4 33 0.69
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:23833989 original size:14 final size:13
Alignment explanation
Indices: 23833972--23834008 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
23833962 TTATTATTTC
23833972 TTATTATTTG--T
1 TTATTATTTGTTT
23833983 TTATTATTTGTTT
1 TTATTATTTGTTT
23833996 ATTATTATTTGTT
1 -TTATTATTTGTT
23834009 ATCATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.43
13 1 0.04
14 12 0.52
ACGTcount: A:0.19, C:0.00, G:0.08, T:0.73
Consensus pattern (13 bp):
TTATTATTTGTTT
Found at i:23835675 original size:12 final size:12
Alignment explanation
Indices: 23835661--23835711 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
23835651 TTTATTTTCT
* *
23835661 TTTTAGTTTTAT
1 TTTTATTTTTAG
23835673 TTTTATTTTTAG
1 TTTTATTTTTAG
*
23835685 TTTTGTTTTTA-
1 TTTTATTTTTAG
*
23835696 TTTTATGTTTATG
1 TTTTATTTTTA-G
23835709 TTT
1 TTT
23835712 ATTGATATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
11 9 0.28
12 20 0.62
13 3 0.09
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (12 bp):
TTTTATTTTTAG
Found at i:23835681 original size:18 final size:18
Alignment explanation
Indices: 23835651--23835699 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
23835641 ATTGAGGTTA
*
23835651 TTTA-TTTTCTTTTTAGT
1 TTTATTTTTATTTTTAGT
23835668 TTTATTTTTATTTTTAGT
1 TTTATTTTTATTTTTAGT
*
23835686 TTTGTTTTTATTTT
1 TTTATTTTTATTTT
23835700 ATGTTTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.12, C:0.02, G:0.06, T:0.80
Consensus pattern (18 bp):
TTTATTTTTATTTTTAGT
Found at i:23835705 original size:18 final size:18
Alignment explanation
Indices: 23835661--23835711 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
23835651 TTTATTTTCT
*
23835661 TTTTA-GTTTTATTTTTA
1 TTTTATGTTTTGTTTTTA
23835678 TTTT-TAGTTTTGTTTTTA
1 TTTTAT-GTTTTGTTTTTA
23835696 TTTTATGTTTATGTTT
1 TTTTATGTTT-TGTTT
23835712 ATTGATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
17 4 0.14
18 19 0.66
19 6 0.21
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (18 bp):
TTTTATGTTTTGTTTTTA
Found at i:23835713 original size:41 final size:42
Alignment explanation
Indices: 23835651--23835733 Score: 107
Period size: 41 Copynumber: 2.0 Consensus size: 42
23835641 ATTGAGGTTA
* * **
23835651 TTTATTTTCTTTTTAGTTTTATTTTTATTTTTAGTT-TTGTT
1 TTTATTTTATGTTTAGTTTTATTGATATTTTTAGTTGTTGTT
23835692 TTTATTTTATGTTTA-TGTTTATTGATATTTTTAGTTGTTGTT
1 TTTATTTTATGTTTAGT-TTTATTGATATTTTTAGTTGTTGTT
23835734 ATTGTTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 1 0.03
41 30 0.83
42 5 0.14
ACGTcount: A:0.14, C:0.01, G:0.11, T:0.73
Consensus pattern (42 bp):
TTTATTTTATGTTTAGTTTTATTGATATTTTTAGTTGTTGTT
Found at i:23835733 original size:23 final size:22
Alignment explanation
Indices: 23835676--23835744 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
23835666 GTTTTATTTT
23835676 TATTTTTAGTTTTGTTT-TT-A
1 TATTTTTAGTTTTGTTTATTGA
*
23835696 T-TTTAT-GTTTATGTTTATTGA
1 TATTTTTAGTTT-TGTTTATTGA
*
23835717 TATTTTTAGTTGTTG-TTATTGT
1 TATTTTTAGTT-TTGTTTATTGA
23835739 TATTTT
1 TATTTT
23835745 CTTAGGCTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
18 4 0.10
19 9 0.22
20 3 0.08
21 2 0.05
22 16 0.40
23 5 0.12
24 1 0.03
ACGTcount: A:0.16, C:0.00, G:0.13, T:0.71
Consensus pattern (22 bp):
TATTTTTAGTTTTGTTTATTGA
Found at i:23839995 original size:3 final size:3
Alignment explanation
Indices: 23839961--23840012 Score: 61
Period size: 3 Copynumber: 17.0 Consensus size: 3
23839951 CATTTGTTTT
* *
23839961 TTA TTAA TTA TTAA TTA TT- TTA TTA CTA TTA TTA TTA TTA TTG TTA
1 TTA TT-A TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23840007 TTA TTA
1 TTA TTA
23840013 GTATATATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
2 2 0.05
3 34 0.81
4 6 0.14
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:23840506 original size:12 final size:12
Alignment explanation
Indices: 23840491--23840516 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23840481 GTATACTTTC
23840491 ATATATATGTAT
1 ATATATATGTAT
23840503 ATATATATGTAT
1 ATATATATGTAT
23840515 AT
1 AT
23840517 TATTGATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATATATATGTAT
Found at i:23843927 original size:25 final size:25
Alignment explanation
Indices: 23843875--23843940 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
23843865 ATAAAATACA
*
23843875 TCTTTACATTCATTTTTGAGTCAATAT
1 TCTTT-CATTC-TTTTTGAATCAATAT
23843902 TCTTTCATTCTTTTTGAAT-AATTAT
1 TCTTTCATTCTTTTTGAATCAA-TAT
23843927 TCTTTCATTCTTTT
1 TCTTTCATTCTTTT
23843941 GGATTTTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
24 2 0.05
25 25 0.68
26 5 0.14
27 5 0.14
ACGTcount: A:0.21, C:0.15, G:0.05, T:0.59
Consensus pattern (25 bp):
TCTTTCATTCTTTTTGAATCAATAT
Found at i:23846980 original size:45 final size:44
Alignment explanation
Indices: 23846931--23847068 Score: 129
Period size: 44 Copynumber: 3.1 Consensus size: 44
23846921 GGAGCAGGTT
*
23846931 GAAGATAGTAGATCTTGCCTTCCTACATCGACAGCGAAGCAGATC
1 GAAGATA-TAGATCTTGCCTTCCTACATCGACAGCGAAGTAGATC
* * * * * * * * *
23846976 GAAGACA-AGAGCCTTGCCTCCCTTA-ATTG-TAGTGGAGTAGGTT
1 GAAGATATAGA-TCTTGCCTTCC-TACATCGACAGCGAAGTAGATC
23847019 GAAGATAATAGATCTTGCCTTCCTACATCGACAGCGAAGTAGATC
1 GAAGAT-ATAGATCTTGCCTTCCTACATCGACAGCGAAGTAGATC
23847064 GAAGA
1 GAAGA
23847069 CACAAGCCTT
Statistics
Matches: 68, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
43 18 0.26
44 25 0.37
45 25 0.37
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (44 bp):
GAAGATATAGATCTTGCCTTCCTACATCGACAGCGAAGTAGATC
Found at i:23847031 original size:88 final size:88
Alignment explanation
Indices: 23846896--23847772 Score: 1299
Period size: 88 Copynumber: 10.0 Consensus size: 88
23846886 TGAAATCACA
* * ** *
23846896 AAGCCTTCCCTCCCTCGGTTGTAGCGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTACATCG
1 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
23846961 ACAGCGAAGCAGATCGAAGACA-
66 ACAGCGAAGCAGATCGAAGACAC
*** * * *
23846983 AGAGCCTTGCCTCCCTTAATTGTAGTGGAGTAGGTTGAAGATAATAGATCTTGCCTTCCTACATC
1 A-AGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATC
*
23847048 GACAGCGAAGTAGATCGAAGACAC
65 GACAGCGAAGCAGATCGAAGACAC
* *
23847072 AAGCCTTGACTCCCTCGGTTGTAGTGGAGCAGGTTAAAGATAACAGATCTTGCCTTCCTGCATCG
1 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
* * * *
23847137 ACAACAAAGTAGATCGAAGAAAC
66 ACAGCGAAGCAGATCGAAGACAC
* * * * **
23847160 AAGCCTTGCCGCCCTCGGTTGTAGTGGAGTAGGTTGAAGATAGCAGATCTTGCCTTTCTATATCG
1 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
*
23847225 ACAGCAAAGCAGATCGAAGACAC
66 ACAGCGAAGCAGATCGAAGACAC
*
23847248 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATATTGCCTTCCTGCATCG
1 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
*
23847313 ACAGCAAAGCAGATCGAAGACAC
66 ACAGCGAAGCAGATCGAAGACAC
* * *
23847336 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCTTTCTGCATCG
1 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
*
23847401 ACAGTGAAGCAGATCGAAGACAC
66 ACAGCGAAGCAGATCGAAGACAC
*
23847424 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTTCTGCATCG
1 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
*
23847489 ATAGCGAAGCAGATCGAAGACAC
66 ACAGCGAAGCAGATCGAAGACAC
23847512 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
1 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
*
23847577 ACAGCAAAGCAGATCGAAGACAC
66 ACAGCGAAGCAGATCGAAGACAC
* *
23847600 AAACCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCG
1 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
**
23847665 ACAGCGAAGTTGATCGAAGACACC
66 ACAGCGAAGCAGATCGAAGACA-C
* * * ** *
23847689 AA-CCTTGCCTCCCTCGGTTGCAGTGGAGCAAGTTGAAGATAGCAGATCTTGCCTTTTTGCATTG
1 AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
* * *
23847753 ACGGTGAAGCAGATCAAAGA
66 ACAGCGAAGCAGATCGAAGA
23847773 TGGCAGATTT
Statistics
Matches: 722, Mismatches: 65, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
87 1 0.00
88 717 0.99
89 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (88 bp):
AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGATAACAGATCTTGCCTTCCTGCATCG
ACAGCGAAGCAGATCGAAGACAC
Found at i:23848008 original size:132 final size:132
Alignment explanation
Indices: 23847760--23848001 Score: 340
Period size: 132 Copynumber: 1.8 Consensus size: 132
23847750 TTGACGGTGA
* *
23847760 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAAT
** * ** * ** *
23847825 TCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTCATCTCTCTAAGTAGTAGT
66 TCTATCTCCCTAAGCAGCAGTGGAACAGATAAAAAATGGCAAATCTCATCTCTCTAAGTAGTAGT
23847890 GG
131 GG
* **
23847892 AGCAGATCGAAGATGGTGGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAAT
* *
23847957 TCTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAAATGGCAAATC
66 TCTATCTCCCTAAGCAGCAGTGGAACAGATAAAAAATGGCAAATC
23848002 CTATCTCCTT
Statistics
Matches: 94, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
132 94 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGATTACAGTGGAGTACATTGAAGCCAGTAAT
TCTATCTCCCTAAGCAGCAGTGGAACAGATAAAAAATGGCAAATCTCATCTCTCTAAGTAGTAGT
GG
Found at i:23849402 original size:3 final size:3
Alignment explanation
Indices: 23849382--23849423 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
23849372 TTTTATTAAT
*
23849382 TTA TTAA TTA TT- TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23849424 GTATATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23849709 original size:32 final size:30
Alignment explanation
Indices: 23849669--23849731 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 30
23849659 ATGATTCTAC
*
23849669 TTTATATATATATAATTTATATTTAATTATT
1 TTTATATATATATAATTTATA-TTAAGTATT
* *
23849700 TTTAGTATATATGTTATTTATATTAAGTATT
1 TTTA-TATATATATAATTTATATTAAGTATT
23849731 T
1 T
23849732 CATTTCATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (30 bp):
TTTATATATATATAATTTATATTAAGTATT
Found at i:23849728 original size:22 final size:21
Alignment explanation
Indices: 23849686--23849729 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
23849676 ATATATAATT
* *
23849686 TATATTTAATTATTTTTAGTA
1 TATATTTAATTATATTAAGTA
*
23849707 TATATGTTATTTATATTAAGTA
1 TATAT-TTAATTATATTAAGTA
23849729 T
1 T
23849730 TTCATTTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (21 bp):
TATATTTAATTATATTAAGTA
Found at i:23853342 original size:49 final size:49
Alignment explanation
Indices: 23853285--23853388 Score: 154
Period size: 49 Copynumber: 2.1 Consensus size: 49
23853275 TCATGTGTTA
* * * * *
23853285 TAATTTTATATAGTGTTGAGCTTTTGATTCATGATATTGAACTTATTTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
*
23853334 TAATTTTATAAAGTGTTCACCTTTTGATTCATGGTATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
23853383 TAATTT
1 TAATTT
23853389 GTTTTTTTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.52
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
Found at i:23854934 original size:120 final size:120
Alignment explanation
Indices: 23854789--23855104 Score: 587
Period size: 120 Copynumber: 2.6 Consensus size: 120
23854779 ATACATTATT
* *
23854789 TTTATAGTATTACATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTA
1 TTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTA
*
23854854 TAAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATAA
66 TTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATAA
*
23854909 TTTATAGCATTATATATTATTATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTA
1 TTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTA
23854974 TTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATAA
66 TTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATAA
*
23855029 TTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAAAATTTTA
1 TTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTA
23855094 TTAAATTATAT
66 TTAAATTATAT
23855105 TTAATAATAA
Statistics
Matches: 190, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 190 1.00
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
TTTATAGCATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTA
TTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATAA
Found at i:23855212 original size:16 final size:16
Alignment explanation
Indices: 23855191--23855224 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
23855181 ATATTAAGAA
23855191 TTTTATAAAATTATAT
1 TTTTATAAAATTATAT
*
23855207 TTTTATTAAATTATAT
1 TTTTATAAAATTATAT
23855223 TT
1 TT
23855225 AATAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTATAAAATTATAT
Found at i:23855234 original size:16 final size:16
Alignment explanation
Indices: 23855215--23855331 Score: 60
Period size: 16 Copynumber: 7.2 Consensus size: 16
23855205 ATTTTTATTA
23855215 AATTATATTTAATAAT
1 AATTATATTTAATAAT
* *
23855231 AATTATGTTAAATTATAT
1 AATTATATTTAA-TA-AT
** *
23855249 AAGAATATTTAATATT
1 AATTATATTTAATAAT
* *
23855265 AA-GA-ATTTTATAA-
1 AATTATATTTAATAAT
** *
23855278 AATTATATATTTTTATT
1 AATTATAT-TTAATAAT
23855295 AAATTATATTTAATAAT
1 -AATTATATTTAATAAT
* * *
23855312 AATTATGTTAAATTAT
1 AATTATATTTAATAAT
23855328 AATT
1 AATT
23855332 TATAGCATTA
Statistics
Matches: 75, Mismatches: 19, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
13 2 0.03
14 8 0.11
15 3 0.04
16 35 0.47
17 9 0.12
18 18 0.24
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
AATTATATTTAATAAT
Found at i:23855258 original size:79 final size:81
Alignment explanation
Indices: 23855159--23855328 Score: 308
Period size: 81 Copynumber: 2.1 Consensus size: 81
23855149 ATGATTTTAG
23855159 TAAATTCATATAACAATATTTAATATTAAGAATTTTATAAAA-T-TATATTTTTATTAAATTATA
1 TAAATT-ATATAACAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATA
23855222 TTTAATAATAATTATGT
65 TTTAATAATAATTATGT
*
23855239 TAAATTATATAAGAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATAT
1 TAAATTATATAACAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATAT
23855304 TTAATAATAATTATGT
66 TTAATAATAATTATGT
23855320 TAAATTATA
1 TAAATTATA
23855329 ATTTATAGCA
Statistics
Matches: 87, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
79 34 0.39
80 7 0.08
81 46 0.53
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (81 bp):
TAAATTATATAACAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATAT
TTAATAATAATTATGT
Found at i:23855304 original size:199 final size:201
Alignment explanation
Indices: 23855089--23855449 Score: 636
Period size: 199 Copynumber: 1.8 Consensus size: 201
23855079 ATATTAAAAA
* *
23855089 TTTTATTAAATTATATTTAATAATAACTATGATAAATTATATTTTATAGTATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAACTATGATAAATTATAATTTATAGCATTATATATTATGAT
23855154 TTTAGTAAATTCATATAACAATATTTAATATTAAGAATTTTA-TAAAAT-TATATTTTTATTAAA
66 TTTAGTAAATTCATATAACAATATTTAATATTAAGAATTTTATTAAAATATATATTTTTATTAAA
* *
23855217 TTATATTTAATAATAATTATGTTAAATTATATAAGAATATTTAATATTAAGAATTTTATAAAATT
131 TTATATTTAATAATAACTATGATAAATTATATAAGAATATTTAATATTAAGAATTTTATAAAATT
23855282 ATATAT
196 ATATAT
* *
23855288 TTTTATTAAATTATATTTAATAATAATTATGTTAAATTATAATTTATAGCATTATATATTATGAT
1 TTTTATTAAATTATATTTAATAATAACTATGATAAATTATAATTTATAGCATTATATATTATGAT
* *
23855353 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAA
66 TTTAGTAAATTCATATAACAATATTTAATATTAAGAATTTTATTAAAATATATATTTTTATTAAA
23855418 TTATATTTAATAATAACTATGATAAATTATAT
131 TTATATTTAATAATAACTATGATAAATTATAT
23855450 TTTATAGTAT
Statistics
Matches: 152, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
199 102 0.67
200 5 0.03
201 45 0.30
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.50
Consensus pattern (201 bp):
TTTTATTAAATTATATTTAATAATAACTATGATAAATTATAATTTATAGCATTATATATTATGAT
TTTAGTAAATTCATATAACAATATTTAATATTAAGAATTTTATTAAAATATATATTTTTATTAAA
TTATATTTAATAATAACTATGATAAATTATATAAGAATATTTAATATTAAGAATTTTATAAAATT
ATATAT
Found at i:23855382 original size:120 final size:120
Alignment explanation
Indices: 23855239--23855622 Score: 698
Period size: 120 Copynumber: 3.2 Consensus size: 120
23855229 ATAATTATGT
23855239 TAAATT-ATATAAGAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATA
1 TAAATTCATATAAGAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATA
23855303 TTTAATAATAATTATGTTAAATTATAATTTATAGCATTATATATTATGATTTTAG
66 TTTAATAATAATTATGTTAAATTATAATTTATAGCATTATATATTATGATTTTAG
*
23855358 TAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATA
1 TAAATTCATATAAGAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATA
* * * *
23855423 TTTAATAATAACTATGATAAATTATATTTTATAGTATTATATATTATGATTTTAG
66 TTTAATAATAATTATGTTAAATTATAATTTATAGCATTATATATTATGATTTTAG
23855478 TAAATTCATATAAGAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATA
1 TAAATTCATATAAGAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATA
* *
23855543 TTTAATAATAGTTAAGTTAAATTATAATTTATAGCATTATATATTATGATTTTAG
66 TTTAATAATAATTATGTTAAATTATAATTTATAGCATTATATATTATGATTTTAG
23855598 TAAATTCATATAAGAATATTTAATA
1 TAAATTCATATAAGAATATTTAATA
23855623 ATAATTATGT
Statistics
Matches: 252, Mismatches: 12, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
119 6 0.02
120 246 0.98
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TAAATTCATATAAGAATATTTAATATTAAGAATTTTATAAAATTATATATTTTTATTAAATTATA
TTTAATAATAATTATGTTAAATTATAATTTATAGCATTATATATTATGATTTTAG
Found at i:23855659 original size:73 final size:73
Alignment explanation
Indices: 23855540--23855695 Score: 285
Period size: 73 Copynumber: 2.1 Consensus size: 73
23855530 TTATTAAATT
*
23855540 ATATTTAATAATAGTTAAGTTAAATTATAATTTATAGCATTATATATTATGATTTTAGTAAATTC
1 ATATTTAATAATAATTAAGTTAAATTATAATTTATAGCATTATATATTATGATTTTAGTAAATTC
*
23855605 ATATAAGA
66 ATATAACA
*
23855613 ATATTTAATAATAATTATGTTAAATTATAATTTATAGCATTATATATTATGATTTTAGTAAATTC
1 ATATTTAATAATAATTAAGTTAAATTATAATTTATAGCATTATATATTATGATTTTAGTAAATTC
23855678 ATATAACA
66 ATATAACA
23855686 ATATTTAATA
1 ATATTTAATA
23855696 TTAAGAATTT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 80 1.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.46
Consensus pattern (73 bp):
ATATTTAATAATAATTAAGTTAAATTATAATTTATAGCATTATATATTATGATTTTAGTAAATTC
ATATAACA
Found at i:23855914 original size:16 final size:16
Alignment explanation
Indices: 23855895--23855941 Score: 85
Period size: 16 Copynumber: 2.9 Consensus size: 16
23855885 GCTATTACGC
23855895 CTCTATTCCATTACAA
1 CTCTATTCCATTACAA
*
23855911 CTCTATTCCATTACAC
1 CTCTATTCCATTACAA
23855927 CTCTATTCCATTACA
1 CTCTATTCCATTACA
23855942 GCGAACCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.28, C:0.34, G:0.00, T:0.38
Consensus pattern (16 bp):
CTCTATTCCATTACAA
Found at i:23860037 original size:30 final size:30
Alignment explanation
Indices: 23859973--23860065 Score: 152
Period size: 29 Copynumber: 3.1 Consensus size: 30
23859963 TCCATATTTA
*
23859973 TGGAAAATCAAAGATATGGGTATCAAAT-T
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
23860002 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
23860032 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
23860063 TGG
1 TGG
23860066 CATAATAAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
29 27 0.45
30 25 0.42
31 8 0.13
ACGTcount: A:0.41, C:0.06, G:0.26, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:23864697 original size:30 final size:30
Alignment explanation
Indices: 23864633--23864725 Score: 152
Period size: 29 Copynumber: 3.1 Consensus size: 30
23864623 TCCATATTTA
*
23864633 TGGAAAATCAAAGATATGGGTATCAAAT-T
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
23864662 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
23864692 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
23864723 TGG
1 TGG
23864726 CATAATAAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
29 27 0.45
30 25 0.42
31 8 0.13
ACGTcount: A:0.41, C:0.06, G:0.26, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:23865563 original size:7 final size:7
Alignment explanation
Indices: 23865553--23865601 Score: 57
Period size: 7 Copynumber: 7.1 Consensus size: 7
23865543 TTTTAAAATA
23865553 CATTTCC
1 CATTTCC
23865560 CATTTCCC
1 CATTT-CC
*
23865568 CA--CCC
1 CATTTCC
23865573 CATTTCC
1 CATTTCC
23865580 CATTTCC
1 CATTTCC
*
23865587 CATTTCT
1 CATTTCC
23865594 CATTTCC
1 CATTTCC
23865601 C
1 C
23865602 TAAGCCCGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 4 0.11
7 27 0.77
8 4 0.11
ACGTcount: A:0.14, C:0.47, G:0.00, T:0.39
Consensus pattern (7 bp):
CATTTCC
Found at i:23867987 original size:23 final size:23
Alignment explanation
Indices: 23867958--23868004 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
23867948 TACTGTAGCT
23867958 TTTCTTTCCTTGCAATTAAGTAC
1 TTTCTTTCCTTGCAATTAAGTAC
23867981 TTTCTTTCCTTGCAATTAAGTAC
1 TTTCTTTCCTTGCAATTAAGTAC
23868004 T
1 T
23868005 CAAGTTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.49
Consensus pattern (23 bp):
TTTCTTTCCTTGCAATTAAGTAC
Found at i:23868332 original size:15 final size:15
Alignment explanation
Indices: 23868307--23868341 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
23868297 GACTCTATTT
*
23868307 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
23868321 TAATTAATATTAAGA
1 TAATTAATATTAAGA
23868336 TAATTA
1 TAATTA
23868342 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:23870471 original size:23 final size:23
Alignment explanation
Indices: 23870445--23870489 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
23870435 ATTTAAACAC
*
23870445 TTTTTTAAT-TTTTTTATTATTTG
1 TTTTATAATATTTTTTA-TATTTG
23870468 TTTTATAATATTTTTTATATTT
1 TTTTATAATATTTTTTATATTT
23870490 AATTTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (23 bp):
TTTTATAATATTTTTTATATTTG
Found at i:23871471 original size:9 final size:9
Alignment explanation
Indices: 23871447--23871480 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
23871437 ATATAATAAT
*
23871447 TAATTATATT
1 TAATT-TATG
23871457 TAATTTATG
1 TAATTTATG
23871466 TAATTTATG
1 TAATTTATG
23871475 TAATTT
1 TAATTT
23871481 TTTTAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 18 0.78
10 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (9 bp):
TAATTTATG
Found at i:23873037 original size:37 final size:35
Alignment explanation
Indices: 23872944--23873037 Score: 100
Period size: 37 Copynumber: 2.5 Consensus size: 35
23872934 GTCTCCAAAT
*
23872944 TCACATTTCAATTCAATTTCACTTTTTCACTTTCAA
1 TCACAATTCAATTCAA-TTCACTTTTTCACTTTCAA
*
23872980 TCACAATTCAATTCAAAATTCACTTTTTCCATTTTCAA
1 TCACAATTCAATTC--AATTCACTTTTT-CACTTTCAA
*
23873018 GTCA-ATATTCATTTCAATTC
1 -TCACA-ATTCAATTCAATTC
23873038 CACACATATA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
36 13 0.26
37 15 0.30
38 11 0.22
39 11 0.22
ACGTcount: A:0.31, C:0.23, G:0.01, T:0.45
Consensus pattern (35 bp):
TCACAATTCAATTCAATTCACTTTTTCACTTTCAA
Found at i:23873736 original size:6 final size:6
Alignment explanation
Indices: 23873720--23873759 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
23873710 TAAACCCTAG
*
23873720 TTTTTC CTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTT
23873760 CTTCTTTCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:23873850 original size:17 final size:18
Alignment explanation
Indices: 23873828--23873862 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
23873818 TCTTTTTTTT
*
23873828 TTCTTTTA-GTTTCTTTA
1 TTCTTTTATGTTTATTTA
23873845 TTCTTTTATGTTTATTTA
1 TTCTTTTATGTTTATTTA
23873863 CTTTATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.09, G:0.06, T:0.71
Consensus pattern (18 bp):
TTCTTTTATGTTTATTTA
Found at i:23873858 original size:23 final size:21
Alignment explanation
Indices: 23873816--23873875 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 21
23873806 CCTTCATTTC
* *
23873816 TTTCTTT-TTTTTTTCTTTTA
1 TTTCTTTATTATTTTATTTTA
*
23873836 GTTTCTTTATTCTTTTATGTTTA
1 -TTTCTTTATTATTTTAT-TTTA
23873859 TTTACTTTATTATTTTA
1 TTT-CTTTATTATTTTA
23873876 ATGATAGTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 7 0.21
22 10 0.30
23 16 0.48
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.75
Consensus pattern (21 bp):
TTTCTTTATTATTTTATTTTA
Found at i:23874638 original size:25 final size:24
Alignment explanation
Indices: 23874587--23874644 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
23874577 ATTTGGAAAT
*
23874587 CACATTCATAATATGTATTTATGA
1 CACATTCATAATATGTATTTATAA
*
23874611 CACATTCATAAAATAT-TATTTGTAA
1 CACATTCAT--AATATGTATTTATAA
23874636 CACATTCAT
1 CACATTCAT
23874645 TATGCTTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 9 0.30
25 16 0.53
26 5 0.17
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.40
Consensus pattern (24 bp):
CACATTCATAATATGTATTTATAA
Found at i:23874766 original size:11 final size:11
Alignment explanation
Indices: 23874752--23874779 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
23874742 AATTTTTTTC
23874752 ATTTTAATAAT
1 ATTTTAATAAT
23874763 ATTTTAATAAT
1 ATTTTAATAAT
23874774 ATTTTA
1 ATTTTA
23874780 TTACTCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTTTAATAAT
Found at i:23878634 original size:22 final size:24
Alignment explanation
Indices: 23878606--23878652 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
23878596 AAAAAAACAC
23878606 ATTTT-AAAAAA-TATATTTTAAA
1 ATTTTAAAAAAATTATATTTTAAA
*
23878628 ATTTTAAAAAAATTATGTTTTAAA
1 ATTTTAAAAAAATTATATTTTAAA
23878652 A
1 A
23878653 ATAAAAGCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.23
23 6 0.27
24 11 0.50
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
ATTTTAAAAAAATTATATTTTAAA
Found at i:23884484 original size:39 final size:40
Alignment explanation
Indices: 23884439--23884663 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 40
23884429 GCTCCTCGTT
* * * *
23884439 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
23884479 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
23884518 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
23884558 CAAAGGCCTTCGGGACTTAACCCGGAACTT-GTATA-TCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTA-ACTCGCA
** * * * *
23884598 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
23884639 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
23884664 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
39 39 0.25
40 102 0.66
41 14 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:23884532 original size:40 final size:38
Alignment explanation
Indices: 23884406--23884663 Score: 202
Period size: 40 Copynumber: 6.5 Consensus size: 38
23884396 AAATCACGTA
* * *
23884406 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCG--CACAATG
* * * *
23884445 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAATG
*
23884484 CCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCAC-AATG
*
23884524 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCAC-AATG
23884564 CCTTCGGGACTTAACCCGGAACTTGTA-TA-TCGCACAAATG
1 CCTTCGGGACTTAACCCGG-A-TT-TAGTACTCGCAC-AATG
** * * * *
23884604 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAATG
*
23884644 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
23884664 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 23, Indels: 27
0.78 0.10 0.12
Matches are distributed among these distances:
37 2 0.01
38 4 0.02
39 51 0.28
40 110 0.60
41 9 0.05
42 4 0.02
43 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAATG
Found at i:23884672 original size:41 final size:41
Alignment explanation
Indices: 23884595--23884672 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23884585 CTTGTATATC
* * *
23884595 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23884636 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23884673 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23892414 original size:39 final size:40
Alignment explanation
Indices: 23892369--23892593 Score: 224
Period size: 40 Copynumber: 5.7 Consensus size: 40
23892359 GCTCCTCGTT
* * * *
23892369 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
23892409 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
23892448 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
23892488 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
23892528 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
23892569 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
23892594 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 37 0.24
40 104 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:23892462 original size:40 final size:38
Alignment explanation
Indices: 23892336--23892593 Score: 200
Period size: 40 Copynumber: 6.5 Consensus size: 38
23892326 AAATCACGTA
* * *
23892336 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCG--CACAATG
* * * *
23892375 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAATG
*
23892414 CCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCAC-AATG
*
23892454 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCAC-AATG
* *
23892494 CCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGG-ATTTAGTA-CTCGCAC-AATG
** * * * *
23892534 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAATG
*
23892574 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
23892594 CAGCATTCAA
Statistics
Matches: 180, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.01
39 50 0.28
40 116 0.64
41 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAATG
Found at i:23892602 original size:41 final size:41
Alignment explanation
Indices: 23892525--23892602 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23892515 CTTGTATCTC
* * *
23892525 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23892566 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23892603 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23894477 original size:6 final size:6
Alignment explanation
Indices: 23894463--23894532 Score: 131
Period size: 6 Copynumber: 11.7 Consensus size: 6
23894453 TTTGTCTAAT
*
23894463 TATACG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
23894511 TATATG TATATG TATATG TATA
1 TATATG TATATG TATATG TATA
23894533 CGGCGCGATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (6 bp):
TATATG
Found at i:23895918 original size:61 final size:61
Alignment explanation
Indices: 23895830--23895964 Score: 180
Period size: 61 Copynumber: 2.2 Consensus size: 61
23895820 ATTAGAATTA
* * * * * * *
23895830 ATCACATTAATATTAAATTAATGAAATATTTTCTAGATAAATGTTATATTAAATTTAATAT
1 ATCATATTAATATTAAACTAATAAAATACTATCTAGATAAATATTAAATTAAATTTAATAT
* *
23895891 ATCATATTAATGTTAAACTAATAAAATACTATCTAGATCAATATTAAATTAAATTTAATAT
1 ATCATATTAATATTAAACTAATAAAATACTATCTAGATAAATATTAAATTAAATTTAATAT
*
23895952 CTCATATTAATAT
1 ATCATATTAATAT
23895965 CTAGAAAAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (61 bp):
ATCATATTAATATTAAACTAATAAAATACTATCTAGATAAATATTAAATTAAATTTAATAT
Found at i:23901022 original size:7 final size:7
Alignment explanation
Indices: 23901010--23901037 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
23901000 CCAACTACAT
23901010 CTAATGA
1 CTAATGA
23901017 CTAATGA
1 CTAATGA
23901024 CTAATGA
1 CTAATGA
23901031 CTAATGA
1 CTAATGA
23901038 GGAAGAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (7 bp):
CTAATGA
Found at i:23907906 original size:59 final size:59
Alignment explanation
Indices: 23907792--23907910 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
23907782 TTTTAGAAAA
*
23907792 CATTTAGATTGTATTTAAAAATAATATTTTACTATTAAAATATTAAGAATTTTAGTTTT
1 CATTTAGATTGTATTTAAAAATAATATCTTACTATTAAAATATTAAGAATTTTAGTTTT
*
23907851 CATTTAGATTGTATTTAAAAATAATATCTTAGTATTAAAATATTAAGAATTTTAGTTTT
1 CATTTAGATTGTATTTAAAAATAATATCTTACTATTAAAATATTAAGAATTTTAGTTTT
23907910 C
1 C
23907911 TCTATTTATT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (59 bp):
CATTTAGATTGTATTTAAAAATAATATCTTACTATTAAAATATTAAGAATTTTAGTTTT
Found at i:23908426 original size:112 final size:113
Alignment explanation
Indices: 23908310--23908529 Score: 370
Period size: 112 Copynumber: 2.0 Consensus size: 113
23908300 TAGGCATGGT
*
23908310 ATACTCATTTTGTTGACATGTGACAATTATTTATACAACCAATTTCTATATTATATATTACAAGG
1 ATACTCATTTTGTTGACATGTGACAATTATTTATACAACCAATTTATATATTATATATTACAAGG
* *
23908375 TCTCAGTCTC-CAGCTAATGTGGGCAGCCTAAATTTTTGACACATAAC
66 TCTCAGACTCTCAGCTAATGTGGACAGCCTAAATTTTTGACACATAAC
*
23908422 ATACTCATTTTGTTGACATGTGTCAATTATTTATACAACCAATTTATATATTATATATTACAAGG
1 ATACTCATTTTGTTGACATGTGACAATTATTTATACAACCAATTTATATATTATATATTACAAGG
* * *
23908487 TCTTAGACTCTTAGCTAATGTGGACAGCCTAATTTTTTGACAC
66 TCTCAGACTCTCAGCTAATGTGGACAGCCTAAATTTTTGACAC
23908530 GTGGTATATT
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
112 71 0.71
113 29 0.29
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (113 bp):
ATACTCATTTTGTTGACATGTGACAATTATTTATACAACCAATTTATATATTATATATTACAAGG
TCTCAGACTCTCAGCTAATGTGGACAGCCTAAATTTTTGACACATAAC
Found at i:23908953 original size:67 final size:67
Alignment explanation
Indices: 23908879--23909019 Score: 201
Period size: 67 Copynumber: 2.1 Consensus size: 67
23908869 CACATTATTG
* * * *
23908879 GATAATACTTTCATAGCTCACTTTCAATATTTTCATTAAAAAAATAACTTTACTCTTACATTGAC
1 GATAATACTTTCATAGCTCACTTTCAATATTTTCATCAAAAAAATAACTTTAATCTCACATCGAC
23908944 TA
66 TA
* ** *
23908946 GATAATACTTTCATAGCTCACTTTCACTATTTTCATCAAAAAGTTAATTTTAATCTCACATCGAC
1 GATAATACTTTCATAGCTCACTTTCAATATTTTCATCAAAAAAATAACTTTAATCTCACATCGAC
23909011 TA
66 TA
*
23909013 GAGAATA
1 GATAATA
23909020 AGTTCACTTC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.38
Consensus pattern (67 bp):
GATAATACTTTCATAGCTCACTTTCAATATTTTCATCAAAAAAATAACTTTAATCTCACATCGAC
TA
Found at i:23909193 original size:26 final size:26
Alignment explanation
Indices: 23909163--23909215 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23909153 CCTAGCTTGG
23909163 CCAGAAAAATGGGCCTAAAATTTTGC
1 CCAGAAAAATGGGCCTAAAATTTTGC
*
23909189 CCAGAAAAATGGGCCTAGAATTTTGC
1 CCAGAAAAATGGGCCTAAAATTTTGC
23909215 C
1 C
23909216 TAAGATTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (26 bp):
CCAGAAAAATGGGCCTAAAATTTTGC
Found at i:23910079 original size:6 final size:6
Alignment explanation
Indices: 23910068--23910096 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
23910058 TTATAAAAAG
23910068 TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
23910097 CAAATACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TTAAAT
Found at i:23910481 original size:20 final size:17
Alignment explanation
Indices: 23910444--23910493 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 17
23910434 TTTTGTAGGG
*
23910444 TTTTGAGTTTTTTATAT
1 TTTTTAGTTTTTTATAT
23910461 TTTTTAAGTTTATTATATAT
1 TTTTT-AGTTT-TT-TATAT
*
23910481 TCTTTAGTTTTTT
1 TTTTTAGTTTTTT
23910494 TATAACATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 5 0.18
18 7 0.25
19 7 0.25
20 9 0.32
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.70
Consensus pattern (17 bp):
TTTTTAGTTTTTTATAT
Found at i:23910497 original size:18 final size:19
Alignment explanation
Indices: 23910451--23910497 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
23910441 GGGTTTTGAG
*
23910451 TTTTTTATATTTTTTAAGT
1 TTTTTTATATTCTTTAAGT
*
23910470 TTATTATATATTCTTT-AGT
1 TT-TTTTATATTCTTTAAGT
23910489 TTTTTTATA
1 TTTTTTATA
23910498 ACATTTTGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 6 0.25
19 7 0.29
20 11 0.46
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.70
Consensus pattern (19 bp):
TTTTTTATATTCTTTAAGT
Found at i:23910497 original size:20 final size:18
Alignment explanation
Indices: 23910444--23910493 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
23910434 TTTTGTAGGG
*
23910444 TTTTGAGTTTTTTATATT
1 TTTTAAGTTTTTTATATT
23910462 TTTTAAGTTTATTATATATT
1 TTTTAAGTTT-TT-TATATT
*
23910482 CTTT-AGTTTTTT
1 TTTTAAGTTTTTT
23910494 TATAACATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 1 0.04
18 11 0.39
19 7 0.25
20 9 0.32
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.70
Consensus pattern (18 bp):
TTTTAAGTTTTTTATATT
Found at i:23912748 original size:15 final size:15
Alignment explanation
Indices: 23912728--23912841 Score: 87
Period size: 15 Copynumber: 8.0 Consensus size: 15
23912718 CATACTTAAG
23912728 TAGGGTTTGCACATA
1 TAGGGTTTGCACATA
*
23912743 TAGGGTTTGCTCATA
1 TAGGGTTTGCACATA
*
23912758 T-GGGTTTACACATA
1 TAGGGTTTGCACATA
*
23912772 CAGGGTTTGCACATA
1 TAGGGTTTGCACATA
**
23912787 T--GG-TT-CACACC
1 TAGGGTTTGCACATA
* *
23912798 TAGGGTTCGCACAAA
1 TAGGGTTTGCACATA
* *
23912813 CAGGGTTCGCAC-TA
1 TAGGGTTTGCACATA
* *
23912827 AAGGGTTCGCACATA
1 TAGGGTTTGCACATA
23912842 GTTTGTATAA
Statistics
Matches: 79, Mismatches: 14, Indels: 12
0.75 0.13 0.11
Matches are distributed among these distances:
11 5 0.06
12 2 0.03
13 4 0.05
14 24 0.30
15 44 0.56
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (15 bp):
TAGGGTTTGCACATA
Found at i:23912776 original size:29 final size:29
Alignment explanation
Indices: 23912730--23912789 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
23912720 TACTTAAGTA
* * *
23912730 GGGTTTGCACATATAGGGTTTGCTCATAT
1 GGGTTTACACATACAGGGTTTGCACATAT
23912759 GGGTTTACACATACAGGGTTTGCACATAT
1 GGGTTTACACATACAGGGTTTGCACATAT
23912788 GG
1 GG
23912790 TTCACACCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (29 bp):
GGGTTTACACATACAGGGTTTGCACATAT
Found at i:23912894 original size:22 final size:22
Alignment explanation
Indices: 23912869--23913006 Score: 98
Period size: 22 Copynumber: 6.2 Consensus size: 22
23912859 ATAAGGTTCA
* *
23912869 CATATACCACATGTAGGGTTTG
1 CATATACAACATATAGGGTTTG
* **
23912891 CATAAACAACATATAAAGTTTG
1 CATATACAACATATAGGGTTTG
** *
23912913 CATTATTTAA-ATAGTTAGGGTTCG
1 CA-TATACAACATA--TAGGGTTTG
* *
23912937 CATATACCACATATAAGGTTTG
1 CATATACAACATATAGGGTTTG
* * *
23912959 CATAAACAATATATAGGGTTCG
1 CATATACAACATATAGGGTTTG
** *
23912981 CATATTTAAAATATAGGGTTTG
1 CATATACAACATATAGGGTTTG
23913003 CATA
1 CATA
23913007 AATAACCTAT
Statistics
Matches: 86, Mismatches: 26, Indels: 8
0.72 0.22 0.07
Matches are distributed among these distances:
22 67 0.78
23 8 0.09
24 11 0.13
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (22 bp):
CATATACAACATATAGGGTTTG
Found at i:23912941 original size:68 final size:66
Alignment explanation
Indices: 23912863--23913006 Score: 182
Period size: 68 Copynumber: 2.2 Consensus size: 66
23912853 CAACAAATAA
* * * *
23912863 GGTTCACATATACCACATGTAGGGTTTGCATAAACAACATATAAAGTTTGCATTATTT-AAATAG
1 GGTTCGCATATACCACATATAAGGTTTGCATAAACAACATATAAAGTTCGCA-TATTTAAAATA-
23912927 TTAG
64 -TAG
* **
23912931 GGTTCGCATATACCACATATAAGGTTTGCATAAACAATATATAGGGTTCGCATATTTAAAATATA
1 GGTTCGCATATACCACATATAAGGTTTGCATAAACAACATATAAAGTTCGCATATTTAAAATATA
23912996 G
66 G
*
23912997 GGTTTGCATA
1 GGTTCGCATA
23913007 AATAACCTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
66 12 0.18
67 5 0.07
68 50 0.75
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.33
Consensus pattern (66 bp):
GGTTCGCATATACCACATATAAGGTTTGCATAAACAACATATAAAGTTCGCATATTTAAAATATA
G
Found at i:23927229 original size:26 final size:26
Alignment explanation
Indices: 23927195--23927251 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
23927185 CTCTTTACTG
23927195 CTTTTGAAAAGTGTTATGAAAAAGTA
1 CTTTTGAAAAGTGTTATGAAAAAGTA
* *
23927221 CTTTTGAAAAGTGTTGTGGAAAAGTA
1 CTTTTGAAAAGTGTTATGAAAAAGTA
23927247 CTTTT
1 CTTTT
23927252 CAGAAGTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39
Consensus pattern (26 bp):
CTTTTGAAAAGTGTTATGAAAAAGTA
Found at i:23927230 original size:13 final size:13
Alignment explanation
Indices: 23927195--23927269 Score: 55
Period size: 13 Copynumber: 5.8 Consensus size: 13
23927185 CTCTTTACTG
23927195 CTTTTGAAAAGT-
1 CTTTTGAAAAGTA
* *
23927207 GTTATGAAAAAGTA
1 CTTTTG-AAAAGTA
23927221 CTTTTGAAAAGT-
1 CTTTTGAAAAGTA
* *
23927233 GTTGTGGAAAAGTA
1 CTT-TTGAAAAGTA
* *
23927247 CTTTTCAGAAGTA
1 CTTTTGAAAAGTA
*
23927260 ATTTTGAAAA
1 CTTTTGAAAA
23927270 TTTTGAGTGT
Statistics
Matches: 46, Mismatches: 13, Indels: 7
0.70 0.20 0.11
Matches are distributed among these distances:
12 6 0.13
13 34 0.74
14 6 0.13
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.36
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:23927258 original size:26 final size:26
Alignment explanation
Indices: 23927195--23927258 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
23927185 CTCTTTACTG
*
23927195 CTTTTGAAAAGTGTTATGAAAAAGTA
1 CTTTTCAAAAGTGTTATGAAAAAGTA
* * *
23927221 CTTTTGAAAAGTGTTGTGGAAAAGTA
1 CTTTTCAAAAGTGTTATGAAAAAGTA
*
23927247 CTTTTCAGAAGT
1 CTTTTCAAAAGT
23927259 AATTTTGAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (26 bp):
CTTTTCAAAAGTGTTATGAAAAAGTA
Found at i:23929411 original size:72 final size:73
Alignment explanation
Indices: 23929321--23929495 Score: 196
Period size: 72 Copynumber: 2.4 Consensus size: 73
23929311 AAAATCACAT
* * * *
23929321 ATAAACAACAATTGATAAAACTAATTTAGTA-AAAAATAAGTAGAATATAAATTCAATGA-AGAA
1 ATAAACAACTATTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAAT-ATACAA
*
23929384 AGACCAAAC
65 AAACCAAAC
* * * *
23929393 ATAAACAACTTTTAATAAAACTAGA-TTA-CACATAAATAAGTAGAACATAAATTCAATATCCAA
1 ATAAACAACTATTGATAAAACTA-ATTTAGCACAAAAATAAGTAGAACATAAATTCAATATACAA
23929456 AAACCAAAC
65 AAACCAAAC
* * *
23929465 ATAAATAACTGTTGATAAAACTAGTTTAGCA
1 ATAAACAACTATTGATAAAACTAATTTAGCA
23929496 TTATTGTTTA
Statistics
Matches: 85, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
71 2 0.02
72 80 0.94
73 3 0.04
ACGTcount: A:0.55, C:0.13, G:0.08, T:0.25
Consensus pattern (73 bp):
ATAAACAACTATTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAATATACAAA
AACCAAAC
Found at i:23929938 original size:18 final size:18
Alignment explanation
Indices: 23929917--23929982 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
23929907 TCCATCAATT
*
23929917 TGAACACCATTTGAAATG
1 TGAACATCATTTGAAATG
23929935 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
*
23929953 TGAACATCATTTAAAATG
1 TGAACATCATTTGAAATG
23929971 TGAACATCATTT
1 TGAACATCATTT
23929983 CTCATATTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:23930790 original size:22 final size:22
Alignment explanation
Indices: 23930765--23930807 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
23930755 TACAACAAAA
23930765 TAGGCTTTTAGCGACGCTTTTT
1 TAGGCTTTTAGCGACGCTTTTT
*
23930787 TAGGCTTTTAGCGGCGCTTTT
1 TAGGCTTTTAGCGACGCTTTT
23930808 AGAAGCGCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.12, C:0.19, G:0.26, T:0.44
Consensus pattern (22 bp):
TAGGCTTTTAGCGACGCTTTTT
Found at i:23930949 original size:43 final size:43
Alignment explanation
Indices: 23930872--23930956 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
23930862 TTTATAACTA
** *
23930872 AACGCCGCTAAAGACCATGACCTTTAGTGGCGCTTGTCCCACG
1 AACGCCGCTAAAGACCATGACCTTTAACGACGCTTGTCCCACG
* *
23930915 AACGCCGCTGAAGACCATGACCTTTAACGACGCTTTTCCCAC
1 AACGCCGCTAAAGACCATGACCTTTAACGACGCTTGTCCCAC
23930957 AAAACTTCTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.25, C:0.34, G:0.20, T:0.21
Consensus pattern (43 bp):
AACGCCGCTAAAGACCATGACCTTTAACGACGCTTGTCCCACG
Found at i:23934114 original size:24 final size:24
Alignment explanation
Indices: 23934082--23934141 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
23934072 CGTTGAAGGC
23934082 AGAAATAGATAACTTAAACAAATT
1 AGAAATAGATAACTTAAACAAATT
* *
23934106 AGAAATAGATAAATTAAACAACTT
1 AGAAATAGATAACTTAAACAAATT
23934130 AG-AATAGATAAC
1 AGAAATAGATAAC
23934142 AGTAGTCTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 9 0.27
24 24 0.73
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.23
Consensus pattern (24 bp):
AGAAATAGATAACTTAAACAAATT
Found at i:23935360 original size:21 final size:21
Alignment explanation
Indices: 23935311--23935360 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
23935301 GGGGGTTTCA
23935311 AGGGGGGAAATTAGGGATTTT
1 AGGGGGGAAATTAGGGATTTT
* *
23935332 AGGAGGGAAAGTTGGGGATTTT
1 AGGGGGGAAA-TTAGGGATTTT
23935354 -GGGGGGA
1 AGGGGGGA
23935361 GGGGATTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.26, C:0.00, G:0.50, T:0.24
Consensus pattern (21 bp):
AGGGGGGAAATTAGGGATTTT
Found at i:23935608 original size:75 final size:76
Alignment explanation
Indices: 23935394--23935661 Score: 439
Period size: 75 Copynumber: 3.5 Consensus size: 76
23935384 ATTTTTCTAT
* * **
23935394 AAATTATTTTTTTTGACGTTTTTTATAAAAACGCCGCTAAATGTTTTTCTATATAAAATGGTTAT
1 AAATTATTTTTTGTGACGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGACTAT
23935459 TTTTTAAAAGTA
66 TTTTT-AAAGTA
* *
23935471 AAATTATTTTTTGTGGCGCTTTTTTATAAAAACGCCACTAAATGTTTTGCTATATAAAATGACTA
1 AAATTATTTTTTGTGACG-TTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGACTA
23935536 TTTTTTAAAGTA
65 TTTTTTAAAGTA
23935548 AAATTATTTTTTGTGACGTTTTTTATAAAAACG-CGCTAAATGTTTTGCTATATAAAATGACTAT
1 AAATTATTTTTTGTGACGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGACTAT
23935612 TTTTTAAAGTA
66 TTTTTAAAGTA
* *
23935623 AAATTATTTTTTGTGGCGTTTTTAATAAAAACGCCGCTA
1 AAATTATTTTTTGTGACGTTTTTTATAAAAACGCCGCTA
23935662 TTGCTTACCT
Statistics
Matches: 179, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
75 72 0.40
76 20 0.11
77 39 0.22
78 48 0.27
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (76 bp):
AAATTATTTTTTGTGACGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATAAAATGACTAT
TTTTTAAAGTA
Found at i:23935770 original size:114 final size:114
Alignment explanation
Indices: 23935567--23935793 Score: 402
Period size: 114 Copynumber: 2.0 Consensus size: 114
23935557 TTTGTGACGT
*
23935567 TTTTTATAAAAACGCGCTAAATGTTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTT
1 TTTTTATAAAAACGCGCTAAATATTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTT
*
23935632 TTTGTGGCGTTTTTAATAAAAACGCCGCTATTGCTTACCTTTTGCGGCG
66 TTTGTGGCGTTTTTAATAAAAACGCCGCTATTACTTACCTTTTGCGGCG
*
23935681 TTTTTATAAAAACGCCGCTAAATATTTTGCTGTATAAAATGACTATTTTTTAAAGTAAAATTA-T
1 TTTTTATAAAAACG-CGCTAAATATTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATT
*
23935745 TTTTGTGGCGTTTTTTATAAAAACGCCGCTATTACTTACCTTTTGCGGC
65 TTTTGTGGCGTTTTTAATAAAAACGCCGCTATTACTTACCTTTTGCGGC
23935794 AAAATGTTTT
Statistics
Matches: 108, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
114 62 0.57
115 46 0.43
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (114 bp):
TTTTTATAAAAACGCGCTAAATATTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTT
TTTGTGGCGTTTTTAATAAAAACGCCGCTATTACTTACCTTTTGCGGCG
Found at i:23935812 original size:95 final size:97
Alignment explanation
Indices: 23935700--23935890 Score: 332
Period size: 95 Copynumber: 2.0 Consensus size: 97
23935690 AAACGCCGCT
*
23935700 AAATATTTTGCTGTATAAAATGACTATTTTTTAAAGTAAAATTA-TTTTTGTGGCG-TTTTTTAT
1 AAATATTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTTTTTGTGGCGTTTTTTTAT
23935763 AAAAACGCCGCTATTACTTACCTTTTGCGGCA
66 AAAAACGCCGCTATTACTTACCTTTTGCGGCA
*
23935795 AAATGTTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTTTTTGTGGCGTTTTTTTAT
1 AAATATTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTTTTTGTGGCGTTTTTTTAT
* *
23935860 AAAAACGCCGCTATTGCTTACTTTTTGCGGC
66 AAAAACGCCGCTATTACTTACCTTTTGCGGC
23935891 GTTTTTTATA
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
95 42 0.47
96 11 0.12
97 37 0.41
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (97 bp):
AAATATTTTGCTATATAAAATGACTATTTTTTAAAGTAAAATTATTTTTTGTGGCGTTTTTTTAT
AAAAACGCCGCTATTACTTACCTTTTGCGGCA
Found at i:23937060 original size:89 final size:89
Alignment explanation
Indices: 23936880--23937061 Score: 215
Period size: 89 Copynumber: 2.0 Consensus size: 89
23936870 CCCCAAACAA
* *
23936880 CTAACCTCTAAACATTATTTAATATAAAAAATAAAAAACACTAATTAATCTAAATCATAAACCAT
1 CTAACCTCTAAACATTACTTAATATAAAAAATAAAAAACACTAATTAATCTAAACCATAAACCAT
* * *
23936945 AACCCGACCTTGAATCCCTAACCC
66 AACCCGACCTCGAATCCATAAACC
* * ** * *
23936969 CTAACC-CTTAAACATTACTTAATATATAAATTAAAATGCACTAATTAATCTAAACCCTAAACCC
1 CTAACCTC-TAAACATTACTTAATATAAAAAATAAAAAACACTAATTAATCTAAACCATAAACCA
* *
23937033 TAACCTGACAC-CGAATCTATAAACC
65 TAACCCGAC-CTCGAATCCATAAACC
23937058 CTAA
1 CTAA
23937062 ATCCTTAACT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
88 1 0.01
89 76 0.97
90 1 0.01
ACGTcount: A:0.46, C:0.25, G:0.03, T:0.26
Consensus pattern (89 bp):
CTAACCTCTAAACATTACTTAATATAAAAAATAAAAAACACTAATTAATCTAAACCATAAACCAT
AACCCGACCTCGAATCCATAAACC
Found at i:23937075 original size:7 final size:7
Alignment explanation
Indices: 23937054--23937118 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
23937044 CGAATCTATA
*
23937054 AACCCTA
1 AACCCTT
*
23937061 AATCCTT
1 AACCCTT
*
23937068 AACTCTT
1 AACCCTT
23937075 AA-CCTCT
1 AACCCT-T
23937082 AACCCTT
1 AACCCTT
*
23937089 AACCCCT
1 AACCCTT
23937096 AACCCTT
1 AACCCTT
*
23937103 AACCCAT
1 AACCCTT
*
23937110 AAACCTT
1 AACCCTT
23937117 AA
1 AA
23937119 ATCACAACCC
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
6 2 0.04
7 41 0.89
8 3 0.07
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (7 bp):
AACCCTT
Found at i:23937107 original size:14 final size:14
Alignment explanation
Indices: 23937067--23937118 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
23937057 CCTAAATCCT
* *
23937067 TAACTCTTAACCTC
1 TAACCCTTAACCCC
23937081 TAACCCTTAACCCC
1 TAACCCTTAACCCC
*
23937095 TAACCCTTAACCCA
1 TAACCCTTAACCCC
*
23937109 TAAACCTTAA
1 TAACCCTTAA
23937119 ATCACAACCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 34 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.27
Consensus pattern (14 bp):
TAACCCTTAACCCC
Found at i:23937605 original size:41 final size:41
Alignment explanation
Indices: 23937547--23937745 Score: 274
Period size: 41 Copynumber: 4.9 Consensus size: 41
23937537 AAATGTTTTT
* * ** *
23937547 GCGGCGCTTTTTCAAAAATGCCGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
*
23937588 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGTATTA
1 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
* *
23937629 GCGGCGCTTTTTTAAAAACTCCGCTAAAGATCTGAGTATTA
1 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
* *
23937670 GC-GCGCTTTTTCAAAAACGCCGCTAAAGATATGAGCATTA
1 GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
* *
23937710 GCGGCGTTTTTTTAAAAAACGCTGCTAAAGATCTGA
1 GCGGCGCTTTTTT-AAAAACGCCGCTAAAGATCTGA
23937746 AAGGTAGAAA
Statistics
Matches: 141, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 36 0.26
41 85 0.60
42 20 0.14
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (41 bp):
GCGGCGCTTTTTTAAAAACGCCGCTAAAGATCTGAGCATTA
Found at i:23938394 original size:117 final size:107
Alignment explanation
Indices: 23938084--23938443 Score: 594
Period size: 107 Copynumber: 3.3 Consensus size: 107
23938074 TTATAGGCAC
23938084 AAGTTTTTAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTA
1 AAGTTTTTAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTA
*
23938149 TTACTACTGACAAAATTTTACATTCTTTTCTGTAATTTTACA
66 TTGCTACTGACAAAATTTTACATTCTTTTCTGTAATTTTACA
23938191 AAGTTTTTAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTA
1 AAGTTTTTAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTA
23938256 TTGCTACTGACAAAATTTTACATTCTTTTCTGTAATTTTACA
66 TTGCTACTGACAAAATTTTACATTCTTTTCTGTAATTTTACA
* *
23938298 AATTTTTTAATTAATATTTATGTAATTAAAAATGGTCCCTTTAAGATGATTATTAATTATTATTA
1 AAGTTTTTAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTA
*
23938363 TTGCTACTAACAAAATTTTACATTCTTTTACATTCTTTTCTGTAATTTTACA
66 TTGCTACTGAC--AA----A-A---TTTTACATTCTTTTCTGTAATTTTACA
23938415 AAGTTTTTAATTAATATTTATGTAATTAA
1 AAGTTTTTAATTAATATTTATGTAATTAA
23938444 TATTTATGTA
Statistics
Matches: 238, Mismatches: 5, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
107 179 0.75
109 2 0.01
113 1 0.00
114 1 0.00
117 55 0.23
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.49
Consensus pattern (107 bp):
AAGTTTTTAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTA
TTGCTACTGACAAAATTTTACATTCTTTTCTGTAATTTTACA
Found at i:23938442 original size:15 final size:15
Alignment explanation
Indices: 23938422--23938458 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
23938412 ACAAAGTTTT
23938422 TAATTAATATTTATG
1 TAATTAATATTTATG
23938437 TAATTAATATTTATG
1 TAATTAATATTTATG
23938452 TAATTAA
1 TAATTAA
23938459 AAATAGTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TAATTAATATTTATG
Found at i:23940441 original size:19 final size:19
Alignment explanation
Indices: 23940417--23940474 Score: 89
Period size: 19 Copynumber: 3.1 Consensus size: 19
23940407 GTGGTGGAGA
*
23940417 AGAGGAACAAAGCACCAGC
1 AGAGGAACAAAGAACCAGC
* *
23940436 AGAGGAAGAAATAACCAGC
1 AGAGGAACAAAGAACCAGC
23940455 AGAGGAACAAAGAACCAGC
1 AGAGGAACAAAGAACCAGC
23940474 A
1 A
23940475 CCATCAGAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.52, C:0.21, G:0.26, T:0.02
Consensus pattern (19 bp):
AGAGGAACAAAGAACCAGC
Found at i:23940477 original size:25 final size:25
Alignment explanation
Indices: 23940449--23940524 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
23940439 GGAAGAAATA
23940449 ACCAGCAGAGGAACAAAGAACCAGC
1 ACCAGCAGAGGAACAAAGAACCAGC
* * * *
23940474 ACCATCAGAAGAACAAAGAATCAGT
1 ACCAGCAGAGGAACAAAGAACCAGC
* * * *
23940499 ACCAGTAGAGGATCAATGAAGCAGC
1 ACCAGCAGAGGAACAAAGAACCAGC
23940524 A
1 A
23940525 GAGGAACAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.47, C:0.22, G:0.22, T:0.08
Consensus pattern (25 bp):
ACCAGCAGAGGAACAAAGAACCAGC
Found at i:23941325 original size:18 final size:18
Alignment explanation
Indices: 23941304--23941343 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
23941294 ATTCTGGAAT
*
23941304 TTTTATAAA-TATTTTGA
1 TTTTAAAAATTATTTTGA
23941321 GTTTTAAAAATTATTTTGA
1 -TTTTAAAAATTATTTTGA
23941340 TTTT
1 TTTT
23941344 TTTAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (18 bp):
TTTTAAAAATTATTTTGA
Found at i:23941344 original size:19 final size:18
Alignment explanation
Indices: 23941302--23941344 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
23941292 AAATTCTGGA
*
23941302 ATTTTTATAAATATTTTG
1 ATTTTTAAAAATATTTTG
*
23941320 AGTTTTAAAAATTATTTTG
1 ATTTTTAAAAA-TATTTTG
23941339 ATTTTT
1 ATTTTT
23941345 TTAATTTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (18 bp):
ATTTTTAAAAATATTTTG
Found at i:23947979 original size:17 final size:17
Alignment explanation
Indices: 23947953--23947986 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
23947943 GATTAAAAAT
*
23947953 CAAATCTTCTAAGATTA
1 CAAATATTCTAAGATTA
23947970 CAAATATTCTAAGATTA
1 CAAATATTCTAAGATTA
23947987 GTTTCCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (17 bp):
CAAATATTCTAAGATTA
Found at i:23951379 original size:22 final size:22
Alignment explanation
Indices: 23951352--23951393 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
23951342 GAGCCGTGGA
23951352 GGACCGGAGGTAGATCGGTGTT
1 GGACCGGAGGTAGATCGGTGTT
* *
23951374 GGACCGGAGGTGGATTGGTG
1 GGACCGGAGGTAGATCGGTG
23951394 CCAGAGGTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.12, G:0.50, T:0.21
Consensus pattern (22 bp):
GGACCGGAGGTAGATCGGTGTT
Found at i:23952039 original size:20 final size:20
Alignment explanation
Indices: 23952016--23952054 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23952006 AATGGAATAC
23952016 AATGGGATACT-ATGGGATGT
1 AATGGGATA-TGATGGGATGT
*
23952036 AATGTGATATGATGGGATG
1 AATGGGATATGATGGGATG
23952055 ATTACAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.31, C:0.03, G:0.36, T:0.31
Consensus pattern (20 bp):
AATGGGATATGATGGGATGT
Found at i:23952572 original size:19 final size:19
Alignment explanation
Indices: 23952548--23952590 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
23952538 TAATGAACTT
* *
23952548 TTAAACCTATACCGACTAA
1 TTAAACATATACCAACTAA
23952567 TTAAACATATACCAACTAA
1 TTAAACATATACCAACTAA
23952586 TTAAA
1 TTAAA
23952591 TTATGAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.49, C:0.21, G:0.02, T:0.28
Consensus pattern (19 bp):
TTAAACATATACCAACTAA
Found at i:23956838 original size:18 final size:17
Alignment explanation
Indices: 23956811--23956844 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
23956801 CTGGACCTTG
23956811 ACCTGCAGGAGGATAGTA
1 ACCTGCAGGAGG-TAGTA
*
23956829 ACCTGGAGGAGGTAGT
1 ACCTGCAGGAGGTAGT
23956845 GGATGCCCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.29, C:0.15, G:0.38, T:0.18
Consensus pattern (17 bp):
ACCTGCAGGAGGTAGTA
Found at i:23956995 original size:15 final size:15
Alignment explanation
Indices: 23956975--23957072 Score: 169
Period size: 15 Copynumber: 6.5 Consensus size: 15
23956965 TGCTGTTGTG
23956975 CAGGTGGATACTGCC
1 CAGGTGGATACTGCC
*
23956990 CAGGTGGATATTGCC
1 CAGGTGGATACTGCC
*
23957005 CAGGTGGATATTGCC
1 CAGGTGGATACTGCC
*
23957020 CAGGTGGATATTGCC
1 CAGGTGGATACTGCC
23957035 CAGGTGGATACTGCC
1 CAGGTGGATACTGCC
23957050 CAGGTGGATACTGCC
1 CAGGTGGATACTGCC
23957065 CAGGTGGA
1 CAGGTGGA
23957073 AGTAGCGGTT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
15 81 1.00
ACGTcount: A:0.20, C:0.22, G:0.35, T:0.22
Consensus pattern (15 bp):
CAGGTGGATACTGCC
Found at i:23957434 original size:11 final size:11
Alignment explanation
Indices: 23957407--23957441 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
23957397 AGACTCTGAA
23957407 AATCAAAACA-
1 AATCAAAACAC
*
23957417 AAACAAAACAC
1 AATCAAAACAC
23957428 AATCAAAACAC
1 AATCAAAACAC
23957439 AAT
1 AAT
23957442 TGATTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.69, C:0.23, G:0.00, T:0.09
Consensus pattern (11 bp):
AATCAAAACAC
Found at i:23958691 original size:22 final size:21
Alignment explanation
Indices: 23958636--23958692 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
23958626 AAAATAAACA
*
23958636 TTAAAAAATTATTCTAAAAAT
1 TTAAAAAATTATTTTAAAAAT
** *
23958657 AAAAAAAATTATTTTAAAATT
1 TTAAAAAATTATTTTAAAAAT
23958678 TTAAAAAATATATTT
1 TTAAAAAAT-TATTT
23958693 ATTATATTCG
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
21 24 0.83
22 5 0.17
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
TTAAAAAATTATTTTAAAAAT
Found at i:23960540 original size:21 final size:20
Alignment explanation
Indices: 23960502--23960541 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
23960492 AAGTTTGTGT
23960502 TATTATTTTTATTTATAAAA
1 TATTATTTTTATTTATAAAA
23960522 TATTATATATTTA-TTATAAA
1 TATTAT-T-TTTATTTATAAA
23960542 CTTAGAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TATTATTTTTATTTATAAAA
Found at i:23962145 original size:18 final size:18
Alignment explanation
Indices: 23962122--23962159 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
23962112 TGCGTGTTAT
23962122 AAATGTT-ATGAAATTGTG
1 AAATGTTGAT-AAATTGTG
23962140 AAATGTTGATAAATTGTG
1 AAATGTTGATAAATTGTG
23962158 AA
1 AA
23962160 TACTGGAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.37
Consensus pattern (18 bp):
AAATGTTGATAAATTGTG
Found at i:23969164 original size:25 final size:25
Alignment explanation
Indices: 23969097--23969164 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 25
23969087 TTCAAGCGAG
* *
23969097 CCAT-ATCGGGAAGCTCACAAAGAG
1 CCATAATCAGGAAGCTCACAAAGAC
23969121 CCAGTTAAT-AGGAAGCTCACAAAGAC
1 CCA--TAATCAGGAAGCTCACAAAGAC
23969147 CCATAATCAGGAAGCTCA
1 CCATAATCAGGAAGCTCA
23969165 TAAGAGCTGC
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
24 7 0.18
25 10 0.26
26 19 0.50
27 2 0.05
ACGTcount: A:0.40, C:0.25, G:0.21, T:0.15
Consensus pattern (25 bp):
CCATAATCAGGAAGCTCACAAAGAC
Found at i:23969632 original size:21 final size:21
Alignment explanation
Indices: 23969608--23969649 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23969598 TAAATTTAAC
*
23969608 TCAATTTAATACAATTCACAT
1 TCAATTCAATACAATTCACAT
* *
23969629 TCAATTCCATTCAATTCACAT
1 TCAATTCAATACAATTCACAT
23969650 CTTAGGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:23969639 original size:10 final size:11
Alignment explanation
Indices: 23969619--23969649 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
23969609 CAATTTAATA
23969619 CAATTCACATT
1 CAATTCACATT
23969630 CAATTC-CATT
1 CAATTCACATT
23969640 CAATTCACAT
1 CAATTCACAT
23969650 CTTAGGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (11 bp):
CAATTCACATT
Found at i:23971709 original size:12 final size:13
Alignment explanation
Indices: 23971684--23971715 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
23971674 ATTTTTCAGG
23971684 TCATTTTAATTTT
1 TCATTTTAATTTT
23971697 TCATTTTAA-TTT
1 TCATTTTAATTTT
23971709 TCATTTT
1 TCATTTT
23971716 GGAAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (13 bp):
TCATTTTAATTTT
Found at i:23971792 original size:58 final size:59
Alignment explanation
Indices: 23971698--23971818 Score: 138
Period size: 58 Copynumber: 2.1 Consensus size: 59
23971688 TTTAATTTTT
* ** * * *
23971698 CATTTT-AATTTTCATTTTGGAAAAAATTACATTCATTTCGAAATGATT-CTATTTCTC
1 CATTTTCATTTTTCATTTTGGAAAAAACCACAATCATTTCCAAATGATTCCTATTGCTC
* * * *
23971755 TATTTTCATTTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGTTTCCTATTGCTC
1 CATTTTCATTTTTCATTTTGGAAAAAACCACAATCATTTCCAAATGATTCCTATTGCTC
23971814 CATTT
1 CATTT
23971819 CACCATTTCT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 5 0.10
58 34 0.67
59 12 0.24
ACGTcount: A:0.29, C:0.17, G:0.07, T:0.47
Consensus pattern (59 bp):
CATTTTCATTTTTCATTTTGGAAAAAACCACAATCATTTCCAAATGATTCCTATTGCTC
Found at i:23974699 original size:29 final size:30
Alignment explanation
Indices: 23974640--23974697 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
23974630 TCTGAGCCTT
*
23974640 GGGGAAAAAATGTAATTATGTAAAAGTTTA
1 GGGGAAAAAATGTAATTATGAAAAAGTTTA
* * *
23974670 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGAAAAAATGTAATTATGAAAAAGTT
23974698 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGAAAAAATGTAATTATGAAAAAGTTTA
Found at i:23974927 original size:13 final size:13
Alignment explanation
Indices: 23974909--23974940 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
23974899 TTTCCAGCAA
23974909 TTATGAATTTATT
1 TTATGAATTTATT
23974922 TTATGAATTTATT
1 TTATGAATTTATT
*
23974935 TGATGA
1 TTATGA
23974941 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:23975165 original size:50 final size:50
Alignment explanation
Indices: 23975035--23975276 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
23975025 ATTTGGGTAA
* * *
23975035 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
* *
23975091 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGAATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
23975141 AGAGGTCCTATGTAAGACCATGTCTGGGACATGGCTTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
23975191 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
23975241 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
23975277 TTTGGCATGT
Statistics
Matches: 162, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 88 0.54
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:23975223 original size:100 final size:103
Alignment explanation
Indices: 23975035--23975284 Score: 355
Period size: 100 Copynumber: 2.4 Consensus size: 103
23975025 ATTTGGGTAA
*
23975035 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCC---AGATCATGAGAGGTCCC
* *
23975100 CTGTAAGACCATGTCTGGGACATGGAATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGAATGGGCACC-ATCACG
* * *
23975141 AGAGGTCCTATGTAAGACCATGTCTGGGACATGGCTTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCCAGATCATGAGAGGTCCCCTA
*
23975203 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGAATGGGCACCATCACG
*
23975241 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
23975285 GTTATTATCA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 39 0.30
105 2 0.02
106 39 0.30
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGAATGGGCACCATCACG
Found at i:23982043 original size:29 final size:30
Alignment explanation
Indices: 23981984--23982041 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
23981974 TCCGAGCCTT
*
23981984 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
23982014 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
23982042 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:23982271 original size:13 final size:13
Alignment explanation
Indices: 23982253--23982284 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
23982243 TTTCCAGCAA
23982253 TTATGAATTTATT
1 TTATGAATTTATT
23982266 TTATGAATTTATT
1 TTATGAATTTATT
*
23982279 TGATGA
1 TTATGA
23982285 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:23982509 original size:50 final size:50
Alignment explanation
Indices: 23982379--23982620 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
23982369 ATTTGGGTAA
* * *
23982379 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
* *
23982435 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGAATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
23982485 AGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
23982535 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
23982585 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
23982621 TTTGGCATGT
Statistics
Matches: 162, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 88 0.54
51 29 0.18
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:23982567 original size:100 final size:103
Alignment explanation
Indices: 23982379--23982628 Score: 346
Period size: 100 Copynumber: 2.4 Consensus size: 103
23982369 ATTTGGGTAA
23982379 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
23982444 CTGTAAGACCATGTCTGGGACATGGAATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGAATGGGCACC-ATCACG
* * * *
23982485 AGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
*
23982547 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGAATGGGCACCATCACG
* *
23982585 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
23982629 GTTATTATCA
Statistics
Matches: 130, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 38 0.29
105 2 0.02
106 39 0.30
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGAATGGGCACCATCACG
Found at i:23983997 original size:30 final size:30
Alignment explanation
Indices: 23983951--23984016 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
23983941 AGACTATTTT
*
23983951 ATTAATGCAATAAATGAATTTGTTTTATTA
1 ATTAATACAATAAATGAATTTGTTTTATTA
*
23983981 ATTAATACAATCAATGAATTTGTTTTATTA
1 ATTAATACAATAAATGAATTTGTTTTATTA
23984011 ATTAAT
1 ATTAAT
23984017 CTGTTTGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.47
Consensus pattern (30 bp):
ATTAATACAATAAATGAATTTGTTTTATTA
Found at i:23986655 original size:29 final size:30
Alignment explanation
Indices: 23986623--23986692 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
23986613 AAGGAAGCTG
* * *
23986623 TTGTGGCTATCTTTA-TTAAATGAATGTCT
1 TTGTGGATATCTTTATTTAAAAGAATGCCT
* *
23986652 TTGTGGTTATC-TTATTTAAAAGGATGCCT
1 TTGTGGATATCTTTATTTAAAAGAATGCCT
23986681 TTGTGGATATCT
1 TTGTGGATATCT
23986693 CTGTTAGAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.23, C:0.10, G:0.20, T:0.47
Consensus pattern (30 bp):
TTGTGGATATCTTTATTTAAAAGAATGCCT
Found at i:23986703 original size:29 final size:28
Alignment explanation
Indices: 23986591--23986704 Score: 72
Period size: 29 Copynumber: 3.9 Consensus size: 28
23986581 TAAGCGGACA
*
23986591 CCTTTGTGGCA-ATCTCTGTTATAAGGAAG
1 CCTTTGTGG-ATATCTCTGTTA-AAGGATG
* * * *
23986620 -CTGTTGTGGCTATCTTTATTAAATGAATG
1 CCT-TTGTGGATATCTCTGTTAAA-GGATG
* * *
23986649 TCTTTGTGGTTATCT-TATTTAAAAGGATG
1 CCTTTGTGGATATCTCT-GTT-AAAGGATG
23986678 CCTTTGTGGATATCTCTGTTAGAAGGA
1 CCTTTGTGGATATCTCTGTTA-AAGGA
23986705 CGCCCTCATT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
28 6 0.09
29 54 0.82
30 6 0.09
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (28 bp):
CCTTTGTGGATATCTCTGTTAAAGGATG
Found at i:23987089 original size:11 final size:11
Alignment explanation
Indices: 23987073--23987101 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
23987063 GGGGGGGACG
23987073 ACGCCAAGGCT
1 ACGCCAAGGCT
23987084 ACGCCAAGGCT
1 ACGCCAAGGCT
23987095 ACGCCAA
1 ACGCCAA
23987102 AGGAGTGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.31, C:0.38, G:0.24, T:0.07
Consensus pattern (11 bp):
ACGCCAAGGCT
Found at i:23994288 original size:45 final size:45
Alignment explanation
Indices: 23994224--23994316 Score: 186
Period size: 45 Copynumber: 2.1 Consensus size: 45
23994214 AAGTATCATA
23994224 TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
1 TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
23994269 TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
1 TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
23994314 TCA
1 TCA
23994317 CATATAAGGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (45 bp):
TCATAAGGGAGGCAATTACAGACATTATCGTGGATGTAGTCAAGG
Found at i:23996256 original size:25 final size:25
Alignment explanation
Indices: 23996223--23996272 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
23996213 CTTTAAGTCA
23996223 TCTCTTGTTCATAATGAAAAAATGC
1 TCTCTTGTTCATAATGAAAAAATGC
23996248 TCTCTTGTTCATAATGAAAAAATGC
1 TCTCTTGTTCATAATGAAAAAATGC
23996273 ATTCACTGCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (25 bp):
TCTCTTGTTCATAATGAAAAAATGC
Done.