Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 90 of 189
Found at i:24896801 original size:20 final size:20
Alignment explanation
Indices: 24896776--24896813 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
24896766 TTGTTGTTTT
*
24896776 TTGAAAGTTGAGTGACTGAA
1 TTGAAAGTTGAATGACTGAA
24896796 TTGAAAGTTGAATGACTG
1 TTGAAAGTTGAATGACTG
24896814 TTGTGTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (20 bp):
TTGAAAGTTGAATGACTGAA
Found at i:24897705 original size:23 final size:23
Alignment explanation
Indices: 24897677--24897770 Score: 125
Period size: 23 Copynumber: 4.1 Consensus size: 23
24897667 ATGTGTGTAT
* *
24897677 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
* *
24897700 CTTTTCATCTTTAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
24897723 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
24897746 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
24897769 CT
1 CT
24897771 CTTCTAACTT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.49
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:24902206 original size:23 final size:23
Alignment explanation
Indices: 24902178--24902271 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
24902168 ATGTGTGTAT
* *
24902178 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
24902201 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
24902224 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
24902247 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
24902270 CT
1 CT
24902272 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:24904499 original size:10 final size:10
Alignment explanation
Indices: 24904426--24904607 Score: 70
Period size: 9 Copynumber: 19.0 Consensus size: 10
24904416 ACAAAAAGTA
*
24904426 ATAATTTTAT
1 ATAATTTTTT
24904436 AT-A-TTTTT
1 ATAATTTTTT
24904444 A-AATATTTTT
1 ATAAT-TTTTT
*
24904454 ATAA-TTCTT
1 ATAATTTTTT
*
24904463 ATAAGTTTCTT
1 ATAA-TTTTTT
*
24904474 ATAA--TATT
1 ATAATTTTTT
*
24904482 CT-ATTTTTT
1 ATAATTTTTT
24904491 ATAATTTTTT
1 ATAATTTTTT
*
24904501 ATAA--CTTT
1 ATAATTTTTT
*
24904509 -TAATATTTT
1 ATAATTTTTT
*
24904518 AT-A-TTTAT
1 ATAATTTTTT
24904526 ATAATTTTCTTTT
1 ATAA--TT-TTTT
* *
24904539 TTATTTTTATT
1 ATAATTTT-TT
*
24904550 ATAATTTCTT
1 ATAATTTTTT
* *
24904560 AAAATTTCTT
1 ATAATTTTTT
*
24904570 A-ATTTTTTT
1 ATAATTTTTT
24904579 ATAA-TTTTT
1 ATAATTTTTT
24904588 ATAA-TTTTT
1 ATAATTTTTT
24904597 AGTAATTTTTT
1 A-TAATTTTTT
24904608 GTTTTAAAAT
Statistics
Matches: 131, Mismatches: 20, Indels: 41
0.68 0.10 0.21
Matches are distributed among these distances:
7 4 0.03
8 18 0.14
9 40 0.31
10 38 0.29
11 25 0.19
12 1 0.01
13 5 0.04
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:24904595 original size:19 final size:19
Alignment explanation
Indices: 24904426--24904697 Score: 102
Period size: 19 Copynumber: 14.9 Consensus size: 19
24904416 ACAAAAAGTA
*
24904426 ATAATTTTATAT-ATTTTT
1 ATAATTTTTTATAATTTTT
*
24904444 A-AATATTTTTATAATTCTT
1 ATAAT-TTTTTATAATTTTT
* *
24904463 ATAAGTTTCTTATAA-TATT
1 ATAA-TTTTTTATAATTTTT
*
24904482 CT-ATTTTTTATAATTTTTT
1 ATAATTTTTTATAA-TTTTT
* *
24904501 ATAACTTTTAAT-A-TTTT
1 ATAATTTTTTATAATTTTT
*
24904518 AT-A-TTTATATAA--TTT
1 ATAATTTTTTATAATTTTT
* *
24904533 -T-CTTTTTTAT-TTTTATT
1 ATAATTTTTTATAATTT-TT
* *
24904550 ATAATTTCTTAAAATTTCTT
1 ATAATTTTTTATAATTT-TT
*
24904570 A-ATTTTTTTATAATTTTT
1 ATAATTTTTTATAATTTTT
24904588 ATAA-TTTTTAGTAATTTTT
1 ATAATTTTTTA-TAATTTTT
* **
24904607 -T-GTTTTAAAATAATTTTT
1 ATAATTTT-TTATAATTTTT
* **
24904625 AGAATTTAATATAAATTTTT
1 ATAATTTTTTAT-AATTTTT
24904645 AATAA--TTTTATAATTTTCT
1 -ATAATTTTTTATAATTTT-T
* *
24904664 AT-ATCTTTTTAAAATTTTA
1 ATAAT-TTTTTATAATTTTT
24904683 AT-A-TTTTTATAATTT
1 ATAATTTTTTATAATTT
24904698 GCTGACGTGG
Statistics
Matches: 190, Mismatches: 37, Indels: 55
0.67 0.13 0.20
Matches are distributed among these distances:
14 1 0.01
15 14 0.07
16 3 0.02
17 32 0.17
18 38 0.20
19 54 0.28
20 44 0.23
21 4 0.02
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (19 bp):
ATAATTTTTTATAATTTTT
Found at i:24905802 original size:189 final size:185
Alignment explanation
Indices: 24905486--24905827 Score: 542
Period size: 189 Copynumber: 1.8 Consensus size: 185
24905476 ATTTGGTGCT
* * *
24905486 TGTAGTAATTTCATTTAAGTACACTTATAATTTTTTCGAATAGGTTAATAAAATTATTCATGAAT
1 TGTAGTAATTTCATCTAAGTACACTTATAATTTTTTCGAACAGATTAATAAAATTATTCATGAAT
* * *
24905551 TACATTAATACTTTGTATATTGTCCTCACATGGTCTTTGGACGTAAAATATAATGGAAGCAAATG
66 TACATTAATACTTTGTATATTGTCCTCACATGGTCTTTGCACGCAAAATAAAATGGAAGCAAATG
*
24905616 TTGCTCATTGGTTGTTTAATGTTTAACTAATACTAAGCAGTATTATTACCTTAAG
131 TTGCTCATTGGTTGTCTAATGTTTAACTAATACTAAGCAGTATTATTACCTTAAG
24905671 TGTAGTAATTTCATCTAAGTACACTTATAATTTTTT-GAAACAGATTTATTAATAAAATTATTCA
1 TGTAGTAATTTCATCTAAGTACACTTATAATTTTTTCG-AACAG----ATTAATAAAATTATTCA
* * *
24905735 TGAATTACATTAATATTTTGTATATTGTCCTCACATGGTTTTTGCATGCAAAATAAAATGGAAGC
61 TGAATTACATTAATACTTTGTATATTGTCCTCACATGGTCTTTGCACGCAAAATAAAATGGAAGC
24905800 AAATGTTGCTCATTGGTTGTCTAATGTT
126 AAATGTTGCTCATTGGTTGTCTAATGTT
24905828 GCTCTTCAGC
Statistics
Matches: 142, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
184 1 0.01
185 39 0.27
189 102 0.72
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.42
Consensus pattern (185 bp):
TGTAGTAATTTCATCTAAGTACACTTATAATTTTTTCGAACAGATTAATAAAATTATTCATGAAT
TACATTAATACTTTGTATATTGTCCTCACATGGTCTTTGCACGCAAAATAAAATGGAAGCAAATG
TTGCTCATTGGTTGTCTAATGTTTAACTAATACTAAGCAGTATTATTACCTTAAG
Found at i:24910956 original size:29 final size:29
Alignment explanation
Indices: 24910921--24910986 Score: 132
Period size: 29 Copynumber: 2.3 Consensus size: 29
24910911 AATGATTTGT
24910921 GAAAATGTGTTATTTAAATATTGAGTTGC
1 GAAAATGTGTTATTTAAATATTGAGTTGC
24910950 GAAAATGTGTTATTTAAATATTGAGTTGC
1 GAAAATGTGTTATTTAAATATTGAGTTGC
24910979 GAAAATGT
1 GAAAATGT
24910987 AGCGTTTGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.39
Consensus pattern (29 bp):
GAAAATGTGTTATTTAAATATTGAGTTGC
Found at i:24927510 original size:46 final size:44
Alignment explanation
Indices: 24927457--24927549 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
24927447 GGTTCGTTGT
24927457 AATGGAATAGAGGCGTAATAGGTAATTCA-ATTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAAT-GGT-ATTCATA-TGTTTGGTTGAATGG
*
24927503 AATGGAATAGAGGCGTAATGGTATTCTTATGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATGGTATTCATATGTTTGGTTGAATGG
24927547 AAT
1 AAT
24927550 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
44 22 0.49
45 4 0.09
46 19 0.42
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.34
Consensus pattern (44 bp):
AATGGAATAGAGGCGTAATGGTATTCATATGTTTGGTTGAATGG
Found at i:24927545 original size:39 final size:41
Alignment explanation
Indices: 24927452--24927562 Score: 120
Period size: 46 Copynumber: 2.6 Consensus size: 41
24927442 CGTTTGGTTC
24927452 GTTGTAATGGAATAGAGGCGTAATAGGTAATTCAATTGTTTG
1 GTTG-AATGGAATAGAGGCGTAATAGGTAATTCAATTGTTTG
*
24927494 GTTGAATGGAATGGAATAGAGGCGTAAT-GGT-ATTC-TTATGTTTG
1 G-T---T-GAATGGAATAGAGGCGTAATAGGTAATTCAAT-TGTTTG
*
24927538 GTTGAATGGAATAGAGGTGTAATAG
1 GTTGAATGGAATAGAGGCGTAATAG
24927563 CATAAGGAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
39 19 0.32
40 2 0.03
42 1 0.02
43 3 0.05
44 11 0.18
45 3 0.05
46 20 0.33
47 1 0.02
ACGTcount: A:0.31, C:0.04, G:0.32, T:0.34
Consensus pattern (41 bp):
GTTGAATGGAATAGAGGCGTAATAGGTAATTCAATTGTTTG
Found at i:24928010 original size:27 final size:28
Alignment explanation
Indices: 24927980--24928038 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
24927970 GAAATATAGT
*
24927980 AATG-AAGAATTTATAGTATACGATTAA
1 AATGCAAGAATTTATAGTATACAATTAA
*
24928007 AATGCTAATAATTTATAGTATACAATTAA
1 AATGC-AAGAATTTATAGTATACAATTAA
24928036 AAT
1 AAT
24928039 ATTATAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 4 0.14
29 24 0.86
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (28 bp):
AATGCAAGAATTTATAGTATACAATTAA
Found at i:24930988 original size:24 final size:23
Alignment explanation
Indices: 24930958--24931007 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
24930948 CATGGGTTGC
*
24930958 TGTTTTTTTTTCTCTTTTCTGGGT
1 TGTTTTTTTTT-TCTTTTATGGGT
24930982 TG-TTTTTTTTTCTTTTATGGGT
1 TGTTTTTTTTTTCTTTTATGGGT
24931004 TGTT
1 TGTT
24931008 GTTTCTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 13 0.54
23 9 0.38
24 2 0.08
ACGTcount: A:0.02, C:0.08, G:0.18, T:0.72
Consensus pattern (23 bp):
TGTTTTTTTTTTCTTTTATGGGT
Found at i:24931164 original size:25 final size:25
Alignment explanation
Indices: 24931125--24931259 Score: 148
Period size: 25 Copynumber: 5.4 Consensus size: 25
24931115 AAACTTACAC
*
24931125 GGCGATGCAGCAGAGGACTGTCGAT
1 GGCGATGCAGAAGAGGACTGTCGAT
* *
24931150 GGCGATGTAGAAGAGGACTTTCGAT
1 GGCGATGCAGAAGAGGACTGTCGAT
*
24931175 GGCGATGC-GACAGAGGACTTTCGAT
1 GGCGATGCAGA-AGAGGACTGTCGAT
* * * *
24931200 GACTATGCGGCAGAGGACTGTCGAT
1 GGCGATGCAGAAGAGGACTGTCGAT
*
24931225 GGTGATGCA-ACAGAGGACTGTCGAT
1 GGCGATGCAGA-AGAGGACTGTCGAT
*
24931250 GGCAATGCAG
1 GGCGATGCAG
24931260 TAGACGTTCA
Statistics
Matches: 91, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
24 2 0.02
25 88 0.97
26 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.37, T:0.19
Consensus pattern (25 bp):
GGCGATGCAGAAGAGGACTGTCGAT
Found at i:24931362 original size:33 final size:35
Alignment explanation
Indices: 24931296--24931389 Score: 95
Period size: 33 Copynumber: 2.7 Consensus size: 35
24931286 TTGCGGATTT
* * *
24931296 TGATTTGAGGAAAAAAACTATGGGATTTGGGGAAA-
1 TGATTTGGGGAAAAAAA-TAAGGGGTTTGGGGAAAC
* *
24931331 T-TTTTAGGGG-AAAAAATAAGGGGTTTTGGGAAAC
1 TGATTT-GGGGAAAAAAATAAGGGGTTTGGGGAAAC
24931365 TGATTTGGGGATAAAAAATAAGGGG
1 TGATTTGGGGA-AAAAAATAAGGGG
24931390 AGCGGGTGGA
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
33 14 0.29
34 14 0.29
35 7 0.15
36 13 0.27
ACGTcount: A:0.38, C:0.02, G:0.33, T:0.27
Consensus pattern (35 bp):
TGATTTGGGGAAAAAAATAAGGGGTTTGGGGAAAC
Found at i:24931798 original size:33 final size:31
Alignment explanation
Indices: 24931728--24931799 Score: 90
Period size: 33 Copynumber: 2.3 Consensus size: 31
24931718 GCTTTTTTAT
*
24931728 TACTATTTTCTTATTTTTTTAATTATTTTGT
1 TACTATTTTCTTATTTTTTTAATTATTTTGA
* * *
24931759 TCCTATTTTCTTGTTGTCTTTTCATTATTTTGA
1 TACTATTTTCTTATT-T-TTTTAATTATTTTGA
24931792 TACTATTT
1 TACTATTT
24931800 CACAATTATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 13 0.38
32 1 0.03
33 20 0.59
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.67
Consensus pattern (31 bp):
TACTATTTTCTTATTTTTTTAATTATTTTGA
Found at i:24934589 original size:19 final size:19
Alignment explanation
Indices: 24934565--24934601 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
24934555 TAAAAACACC
24934565 CAAAAA-CTAACAAACAAAT
1 CAAAAACCTAA-AAACAAAT
24934584 CAAAAACCTAAAAACAAA
1 CAAAAACCTAAAAACAAA
24934602 ACCAAATCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.70, C:0.22, G:0.00, T:0.08
Consensus pattern (19 bp):
CAAAAACCTAAAAACAAAT
Found at i:24934607 original size:20 final size:19
Alignment explanation
Indices: 24934564--24934607 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
24934554 CTAAAAACAC
24934564 CCAAAAACTAACAAACAAA
1 CCAAAAACTAACAAACAAA
*
24934583 TCAAAAACCTAA-AAACAAAA
1 CCAAAAA-CTAACAAAC-AAA
24934603 CCAAA
1 CCAAA
24934608 TCCAAAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.68, C:0.25, G:0.00, T:0.07
Consensus pattern (19 bp):
CCAAAAACTAACAAACAAA
Found at i:24942313 original size:26 final size:25
Alignment explanation
Indices: 24942264--24942319 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
24942254 AAATTCAATA
* *
24942264 ATATTTCAAATATATACAAACATAC
1 ATATATCAAATAAATACAAACATAC
*
24942289 ATATATCAAATTAAATACAAGCATAC
1 ATATATCAAA-TAAATACAAACATAC
24942315 ATATA
1 ATATA
24942320 ACACAAAGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.54, C:0.14, G:0.02, T:0.30
Consensus pattern (25 bp):
ATATATCAAATAAATACAAACATAC
Found at i:24942714 original size:21 final size:21
Alignment explanation
Indices: 24942690--24942730 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
24942680 AGAAGGAGTG
24942690 CGACAAGCTAAGAGTATGCCA
1 CGACAAGCTAAGAGTATGCCA
24942711 CGACAAGCTAAGAGTATGCC
1 CGACAAGCTAAGAGTATGCC
24942731 TCAGAAGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (21 bp):
CGACAAGCTAAGAGTATGCCA
Found at i:24944676 original size:27 final size:27
Alignment explanation
Indices: 24944638--24944805 Score: 183
Period size: 27 Copynumber: 6.2 Consensus size: 27
24944628 AGAGGTAAAT
*
24944638 AAATGACCAAAATACCCCCATAGAGTA
1 AAATGACCAAAATACCCCCATAGGGTA
* * *
24944665 TAATGACTAAAATACCCCTATAGGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
* *
24944692 AAATGATCGAAATACCCCCATAGGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
* * * *
24944719 AAATGACCGAAATACCTCCATATGGTG
1 AAATGACCAAAATACCCCCATAGGGTA
* * *
24944746 AAATGATCGAAATACCCTCATAGGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
* * * *
24944773 AAATAATCGAAATACCCCTATAGGGTA
1 AAATGACCAAAATACCCCCATAGGGTA
24944800 AAATGA
1 AAATGA
24944806 ATGTTATACC
Statistics
Matches: 119, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 119 1.00
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (27 bp):
AAATGACCAAAATACCCCCATAGGGTA
Found at i:24944724 original size:54 final size:54
Alignment explanation
Indices: 24944638--24944805 Score: 214
Period size: 54 Copynumber: 3.1 Consensus size: 54
24944628 AGAGGTAAAT
* * * * *
24944638 AAATGACCAAAATACCCCCATAGAGTATAATGACTAAAATACCCCTATAGGGTA
1 AAATGATCGAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTA
* * *
24944692 AAATGATCGAAATACCCCCATAGGGTAAAATGACCGAAATACCTCC-ATATGGTG
1 AAATGATCGAAATACCCCCATAGGGTAAAATGACTGAAATACC-CCTATAGGGTA
* *
24944746 AAATGATCGAAATACCCTCATAGGGTAAAAT-AATCGAAATACCCCTATAGGGTA
1 AAATGATCGAAATACCCCCATAGGGTAAAATGACT-GAAATACCCCTATAGGGTA
24944800 AAATGA
1 AAATGA
24944806 ATGTTATACC
Statistics
Matches: 98, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 3 0.03
54 93 0.95
55 2 0.02
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (54 bp):
AAATGATCGAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTA
Found at i:24945026 original size:26 final size:26
Alignment explanation
Indices: 24944997--24945050 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
24944987 TTGCCACATT
* *
24944997 TACTGTTACTAGCAGCTTCGCTGTGA
1 TACTATTACTAGCAGCTTCGCTGCGA
* * *
24945023 TACTATTACTGGCGGCTTTGCTGCGA
1 TACTATTACTAGCAGCTTCGCTGCGA
24945049 TA
1 TA
24945051 TTGGTGTGTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (26 bp):
TACTATTACTAGCAGCTTCGCTGCGA
Found at i:24945238 original size:28 final size:28
Alignment explanation
Indices: 24945153--24945239 Score: 129
Period size: 28 Copynumber: 3.1 Consensus size: 28
24945143 ATTGCACTGT
* * * *
24945153 ACTGATACTGTATTGGGCTAAGGCCCAA
1 ACTGTTACAGTATTGGGCTCAGGCCCAC
*
24945181 ACTGTTACAGTATTGGGCTCAGGCCTAC
1 ACTGTTACAGTATTGGGCTCAGGCCCAC
24945209 ACTGTTACAGTATTGGGCTCAGGCCCAC
1 ACTGTTACAGTATTGGGCTCAGGCCCAC
24945237 ACT
1 ACT
24945240 ATATTGTTAC
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (28 bp):
ACTGTTACAGTATTGGGCTCAGGCCCAC
Found at i:24947090 original size:27 final size:26
Alignment explanation
Indices: 24947027--24947115 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
24947017 TAAGGGATTT
* * * *
24947027 TCCTTCAGAGTTCATCATACATACTA
1 TCCTTCAGTGTCCACCACACATACTA
*
24947053 TCTCTTTAGTGTCCACCACACATACTA
1 TC-CTTCAGTGTCCACCACACATACTA
*
24947080 TCACTTCAGTGTTCACCACACATACTA
1 TC-CTTCAGTGTCCACCACACATACTA
24947107 TTCCTTCAG
1 -TCCTTCAG
24947116 AGTTTGTCGG
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 2 0.04
27 49 0.92
28 2 0.04
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (26 bp):
TCCTTCAGTGTCCACCACACATACTA
Found at i:24950117 original size:27 final size:27
Alignment explanation
Indices: 24950079--24950130 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
24950069 TTCTTTTCCT
24950079 TAGATCTCCACAAAGGCTTCCATTTCA
1 TAGATCTCCACAAAGGCTTCCATTTCA
*
24950106 TAGATTTCCACAAAGGCTTCCATTT
1 TAGATCTCCACAAAGGCTTCCATTT
24950131 TCTAGCGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.33
Consensus pattern (27 bp):
TAGATCTCCACAAAGGCTTCCATTTCA
Found at i:24953641 original size:13 final size:13
Alignment explanation
Indices: 24953623--24953647 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24953613 TTTTTGTGTT
24953623 TTTTTCTTTCATG
1 TTTTTCTTTCATG
24953636 TTTTTCTTTCAT
1 TTTTTCTTTCAT
24953648 AGCGAAGTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.04, T:0.72
Consensus pattern (13 bp):
TTTTTCTTTCATG
Found at i:24955060 original size:68 final size:68
Alignment explanation
Indices: 24954980--24955131 Score: 198
Period size: 68 Copynumber: 2.2 Consensus size: 68
24954970 AATATTATTT
* * * *
24954980 TAATATATTTAATATTAAATTAAATTTAATAATTATCTTGAT-AGTATTTTATTAATTTAATATT
1 TAAT-TATTTAATATTAAATTAAATCTAATAATTATCGTGATAAGTATTATACTAATTTAATATT
24955044 AAAG
65 AAAG
* *
24955048 TAATTATCTTAATATTAAATTTAATCTAATATTTATCGTGATAAGTATTATACTAATTTAATATT
1 TAATTAT-TTAATATTAAATTAAATCTAATAATTATCGTGATAAGTATTATACTAATTTAATATT
24955113 AAAG
65 AAAG
*
24955117 TGATTAAGTTTAATA
1 TAATT-A-TTTAATA
24955132 ATAGTTGAAC
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
67 3 0.04
68 34 0.47
69 28 0.38
70 7 0.10
71 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (68 bp):
TAATTATTTAATATTAAATTAAATCTAATAATTATCGTGATAAGTATTATACTAATTTAATATTA
AAG
Found at i:24956786 original size:194 final size:192
Alignment explanation
Indices: 24956381--24956896 Score: 495
Period size: 194 Copynumber: 2.7 Consensus size: 192
24956371 AGGTTTAACT
* * * * * * * *
24956381 CAGACGAGTAACCTAACATGTATATATTTAGCTTGGACAAGCAATCAGATGTGTCATTATAAAGG
1 CAGATGAGTAACCTGACATGTATATATTCAACTTAGACAAGCAATAAAATATGTCATTATAAAGG
*
24956446 TTTAGCCTAGACTGGTAACCTGACACAAATATATATTCAACTCAGACGAGCAATTGTTGTATTAA
66 TTTAGCCTAGACTGGTAACCTGACACAAATATATATTCAACTCAGACGAGCAATTGTTGTATCAA
* * ** *** **
24956511 AGATACATGTGACACTTATTTAGCCTGGACTGGAAACTTGTTGTGGTTTTAAAGGTTTAGCC
131 AGATACATGTGACACTAATTTAGCCTAGACTGGAAACTAATTGCCATTTTAAACCTTTAGCC
* * * **
24956573 CGGAT-AGGTAACTTGACATGTATATATTCAACTTAGACAAGTAATAAAATATGTTGTTATAAAG
1 CAGATGA-GTAACCTGACATGTATATATTCAACTTAGACAAGCAATAAAATATGTCATTATAAAG
* * **
24956637 GTTTAGCCTGGATTGGTAACCTGACACAAATATATATATTCAACTTGGACGAGCAATTAG-TGTA
65 GTTTAGCCTAGACTGGTAACCTGACAC-AA-ATATATATTCAACTCAGACGAGCAATT-GTTGTA
* * *
24956701 TCAAAGATATATGT-A-ACTCAAGTTTAGCTTAGACTGGTAACCTAATT-CCATTTTAAACCTTT
127 TCAAAGATACATGTGACACT-AA-TTTAGCCTAGACTGG-AAACTAATTGCCATTTTAAACCTTT
24956763 AGCC
189 AGCC
** * *** * * *
24956767 CAGATGAGTAACCTGACATGTATATATTCGGCTTACACAAGCAATCGGATGTGCCATTATAAAAG
1 CAGATGAGTAACCTGACATGTATATATTCAACTTAGACAAGCAATAAAATATGTCATTATAAAGG
* * ** * *
24956832 TTAAG-CTTGTACTACTAACCTGACACAAATATATATATTCAGCTCAGACGAGAAATTGTTGTAT
66 TTTAGCCTAG-ACTGGTAACCTGACAC-AA-ATATATATTCAACTCAGACGAGCAATTGTTGTAT
24956896 C
128 C
24956897 GGAGATGCCT
Statistics
Matches: 261, Mismatches: 53, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
191 1 0.00
192 77 0.30
193 8 0.03
194 167 0.64
195 8 0.03
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (192 bp):
CAGATGAGTAACCTGACATGTATATATTCAACTTAGACAAGCAATAAAATATGTCATTATAAAGG
TTTAGCCTAGACTGGTAACCTGACACAAATATATATTCAACTCAGACGAGCAATTGTTGTATCAA
AGATACATGTGACACTAATTTAGCCTAGACTGGAAACTAATTGCCATTTTAAACCTTTAGCC
Found at i:24974241 original size:22 final size:22
Alignment explanation
Indices: 24974213--24974285 Score: 78
Period size: 21 Copynumber: 3.4 Consensus size: 22
24974203 CAAAACAGCA
*
24974213 GTTTCTCCCTTCCTTCTTGCTG
1 GTTTCTCCCTTCGTTCTTGCTG
*
24974235 GTTTCTCCCTT-GTTCTTTCTG
1 GTTTCTCCCTTCGTTCTTGCTG
* * * *
24974256 GTTTGT-CCATCGTTTTTGCTA
1 GTTTCTCCCTTCGTTCTTGCTG
24974277 GTTTCTCCC
1 GTTTCTCCC
24974286 CTCTTTTTTG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 3 0.07
21 25 0.61
22 13 0.32
ACGTcount: A:0.03, C:0.30, G:0.15, T:0.52
Consensus pattern (22 bp):
GTTTCTCCCTTCGTTCTTGCTG
Found at i:24976912 original size:29 final size:30
Alignment explanation
Indices: 24976848--24977093 Score: 437
Period size: 29 Copynumber: 8.3 Consensus size: 30
24976838 GGTTTTGACA
24976848 TAGTGTATTTTAAAAATAAAAAATATATATG
1 TAGTGTATTTTAAAAATAAAAAA-ATATATG
*
24976879 CAGTGTATTTTAAAAAT-AAAAAATATATG
1 TAGTGTATTTTAAAAATAAAAAAATATATG
24976908 TAGTGTATTTTAAAAATAAAAAAATATATG
1 TAGTGTATTTTAAAAATAAAAAAATATATG
24976938 TAGTGTATTTTAAAAATAAAAAAATATATG
1 TAGTGTATTTTAAAAATAAAAAAATATATG
24976968 TAGTGTATTTTAAAAAT-AAAAAATATATG
1 TAGTGTATTTTAAAAATAAAAAAATATATG
*
24976997 TAGTGTATTTTAAAAAT-AAAAACTATATG
1 TAGTGTATTTTAAAAATAAAAAAATATATG
24977026 TAGTGTATTTTAAAAAT-AAAAAATATATG
1 TAGTGTATTTTAAAAATAAAAAAATATATG
24977055 TAGTGTATTTTAAAAATAAAAAAATATATG
1 TAGTGTATTTTAAAAATAAAAAAATATATG
24977085 TAGTGTATT
1 TAGTGTATT
24977094 CGGTTTATTC
Statistics
Matches: 209, Mismatches: 4, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
29 108 0.52
30 85 0.41
31 16 0.08
ACGTcount: A:0.51, C:0.01, G:0.11, T:0.38
Consensus pattern (30 bp):
TAGTGTATTTTAAAAATAAAAAAATATATG
Found at i:24976943 original size:59 final size:59
Alignment explanation
Indices: 24976848--24977093 Score: 433
Period size: 59 Copynumber: 4.2 Consensus size: 59
24976838 GGTTTTGACA
*
24976848 TAGTGTATTTTAAAAATAAAAAATATATATGCAGTGTATTTTAAAAAT-AAAAAATATATG
1 TAGTGTATTTTAAAAAT-AAAAA-ATATATGTAGTGTATTTTAAAAATAAAAAAATATATG
24976908 TAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATG
1 TAGTGTATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATG
*
24976968 TAGTGTATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAAT-AAAAACTATATG
1 TAGTGTATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATG
24977026 TAGTGTATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATG
1 TAGTGTATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATG
24977085 TAGTGTATT
1 TAGTGTATT
24977094 CGGTTTATTC
Statistics
Matches: 181, Mismatches: 3, Indels: 5
0.96 0.02 0.03
Matches are distributed among these distances:
58 57 0.31
59 72 0.40
60 52 0.29
ACGTcount: A:0.51, C:0.01, G:0.11, T:0.38
Consensus pattern (59 bp):
TAGTGTATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATG
Found at i:24977446 original size:39 final size:39
Alignment explanation
Indices: 24977403--24977483 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
24977393 ACTAAAGTGA
24977403 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
1 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
24977442 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
1 AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
24977481 AAA
1 AAA
24977484 TCGATTGCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (39 bp):
AAAGAAAACAATAGTTCAAGTAAAGCTTTAAAGATGAAC
Found at i:24982177 original size:581 final size:581
Alignment explanation
Indices: 24980526--24982221 Score: 3335
Period size: 581 Copynumber: 2.9 Consensus size: 581
24980516 CTTCTAACAG
24980526 AGAAAGTGACCTTGAAATCACGATGTTAAGGGAAACCATTGCAACTAGTTTAATGAATCCATATT
1 AGAAAGTGACCTTGAAATCACGATGTTAAGGGAAACCATTGCAACTAGTTTAATGAATCCATATT
24980591 TGT-AAAA-ATTTTGTATCATAACCTAATTTCTAGTAATAATGAAACTTGTTATGTCTTATGTTA
66 TGTAAAAATATTTTGTATCATAACCTAATTTCTAGTAATAATGAAACTTGTTATGTCTTATGTTA
24980654 CTATATTTTTTTTATTAAAAA-CATCCGTTTAGATACTTCAAAATTTGATCCAAGTATAATGTTA
131 CTATATTTTTTTTATTAAAAACCATCCGTTTAGATACTTCAAAATTTGATCCAAGTATAATGTTA
24980718 CTATTTGTGAAAATAATATTTATCATTGTTATAAAAAATATTTAACTATAAAAAAATTAAAAAAA
196 CTATTTGTGAAAATAATATTTATCATTGTTATAAAAAATATTTAACTAT-AAAAAATTAAAAAAA
24980783 ATTATCATTTTATCTAATAAATAATTTAAATTAATTATATAATTCATTAAAATATTGGAAGATAC
260 ATTATCATTTTATCTAATAAATAATTTAAATTAATTATATAATTCATTAAAATATTGGAAGATAC
24980848 ATTTTAATATTTTATTAAATGAATTTATATATTCACATATTTTAATAATTTTAAAAAAAGTAAAA
325 ATTTTAATATTTTATTAAATGAATTTATATATTCACATATTTTAATAATTTT-AAAAAAGTAAAA
24980913 TAATTTAAATAACTTCTATTATATATCAATTCTAATATGATGTCCTTAATAGTCATTTTTTATTT
389 TAATTTAAATAACTTCTATTATATATCAATTCTAATATGATGTCCTTAATAGTCATTTTTTATTT
24980978 TCACCTCACCGCTACAGTTGCGTTTGAATCCAAACACACACTCCACCATTGTTTCTAATCTCACC
454 TCACCTCACCGCTACAGTTGCGTTTGAATCCAAACACACACTCCACCATTGTTTCTAATCTCACC
24981043 GCTACAGTAACTAATCTCACCGCCACCGCTGTTTTTAACCTCACCGGAGGTAAACACACCGCC
519 GCTACAGTAACTAATCTCACCGCCACCGCTGTTTTTAACCTCACCGGAGGTAAACACACCGCC
24981106 AGAAAGTGACCTTGAAATCACGATGTTAAGGGAAACCATTGCAACTAGTTTAATGAATCCATATT
1 AGAAAGTGACCTTGAAATCACGATGTTAAGGGAAACCATTGCAACTAGTTTAATGAATCCATATT
24981171 TGTAAAAATATTTTGTATCATAACCTAATTTCTAGTAATAATGAAACTTGTTATGTCTTATGTTA
66 TGTAAAAATATTTTGTATCATAACCTAATTTCTAGTAATAATGAAACTTGTTATGTCTTATGTTA
24981236 CTATATTTTTTTTTATTAAAAACCATCCGTTTAGATACTTCAAAATTTGATCCAAGTATAATGTT
131 CTATA-TTTTTTTTATTAAAAACCATCCGTTTAGATACTTCAAAATTTGATCCAAGTATAATGTT
24981301 ACTATTTGTGAAAATAATATTTATCATTGTTATAAAAAATATTTAACTATAAAAAATTAAAAAAA
195 ACTATTTGTGAAAATAATATTTATCATTGTTATAAAAAATATTTAACTATAAAAAATTAAAAAAA
24981366 ATTATCATTTTATCTAATAAATAATTTAAATTAATTATATAATTCATTAAAATATTGGAAGATAC
260 ATTATCATTTTATCTAATAAATAATTTAAATTAATTATATAATTCATTAAAATATTGGAAGATAC
24981431 ATTTTAATATTTTATTAAATGAATTTATATATTCACATATTTTAATAATTTTAAAAAAGTAAAAT
325 ATTTTAATATTTTATTAAATGAATTTATATATTCACATATTTTAATAATTTTAAAAAAGTAAAAT
24981496 AATTTAAATAACTTCTATTATATATCAATTCTAATATGATGTCCTTAATAGTCATTTTTTATTTT
390 AATTTAAATAACTTCTATTATATATCAATTCTAATATGATGTCCTTAATAGTCATTTTTTATTTT
24981561 CACCTCACCGCTACAGTTGCGTTTGAATCCAAACACACACTCCACCATTGTTTCTAATCTCACCG
455 CACCTCACCGCTACAGTTGCGTTTGAATCCAAACACACACTCCACCATTGTTTCTAATCTCACCG
24981626 CTACAGTAACTAATCTCACCGCCACCGCTGTTTTTAACCTCACCGGAGGTAAACACACCGCC
520 CTACAGTAACTAATCTCACCGCCACCGCTGTTTTTAACCTCACCGGAGGTAAACACACCGCC
24981688 AGAAAGTGACCTTGAAATCACGATGTTAAGGGAAACCATTGCAACTAGTTTAATGAATCCATATT
1 AGAAAGTGACCTTGAAATCACGATGTTAAGGGAAACCATTGCAACTAGTTTAATGAATCCATATT
24981753 TGTAAAAATATTTTGTATCATAACCTAATTTCTAGTAATAATGAAACTTGTTATGTCTTATGTTA
66 TGTAAAAATATTTTGTATCATAACCTAATTTCTAGTAATAATGAAACTTGTTATGTCTTATGTTA
24981818 CTATATTTTTTTTATTAAAAACCATCCGTTTAGATACTTCAAAATTTGATCCAAGTATAATGTTA
131 CTATATTTTTTTTATTAAAAACCATCCGTTTAGATACTTCAAAATTTGATCCAAGTATAATGTTA
24981883 CTATTTGTGAAAATAATATTTATCATTGTTATAAAAAATATTTAACTATAAAAAATTAAAAAAAA
196 CTATTTGTGAAAATAATATTTATCATTGTTATAAAAAATATTTAACTATAAAAAATTAAAAAAAA
24981948 TTATCATTTTATCTAATAAATAATTTAAATTAATTATATAATTCATTAAAATATTGGAAGATACA
261 TTATCATTTTATCTAATAAATAATTTAAATTAATTATATAATTCATTAAAATATTGGAAGATACA
24982013 TTTTAATATTTTATTAAATGAATTTATATATTCACATATTTTAATAATTTTAAAAAAGTAAAATA
326 TTTTAATATTTTATTAAATGAATTTATATATTCACATATTTTAATAATTTTAAAAAAGTAAAATA
24982078 ATTTAAATAACTTCTATTATATATCAATTCTAATATGATGTCCTTAATAGTCATTTTTTATTTTC
391 ATTTAAATAACTTCTATTATATATCAATTCTAATATGATGTCCTTAATAGTCATTTTTTATTTTC
*
24982143 ACCTCACCGCTACAGTTGCGTTTGAATCCAAACACACACTCCACCATTGTTTCTAATCTCACCAC
456 ACCTCACCGCTACAGTTGCGTTTGAATCCAAACACACACTCCACCATTGTTTCTAATCTCACCGC
24982208 TACAGTAACTAATC
521 TACAGTAACTAATC
24982222 ATTCTATATA
Statistics
Matches: 1111, Mismatches: 1, Indels: 7
0.99 0.00 0.01
Matches are distributed among these distances:
580 68 0.06
581 402 0.36
582 401 0.36
583 148 0.13
584 92 0.08
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (581 bp):
AGAAAGTGACCTTGAAATCACGATGTTAAGGGAAACCATTGCAACTAGTTTAATGAATCCATATT
TGTAAAAATATTTTGTATCATAACCTAATTTCTAGTAATAATGAAACTTGTTATGTCTTATGTTA
CTATATTTTTTTTATTAAAAACCATCCGTTTAGATACTTCAAAATTTGATCCAAGTATAATGTTA
CTATTTGTGAAAATAATATTTATCATTGTTATAAAAAATATTTAACTATAAAAAATTAAAAAAAA
TTATCATTTTATCTAATAAATAATTTAAATTAATTATATAATTCATTAAAATATTGGAAGATACA
TTTTAATATTTTATTAAATGAATTTATATATTCACATATTTTAATAATTTTAAAAAAGTAAAATA
ATTTAAATAACTTCTATTATATATCAATTCTAATATGATGTCCTTAATAGTCATTTTTTATTTTC
ACCTCACCGCTACAGTTGCGTTTGAATCCAAACACACACTCCACCATTGTTTCTAATCTCACCGC
TACAGTAACTAATCTCACCGCCACCGCTGTTTTTAACCTCACCGGAGGTAAACACACCGCC
Found at i:24985131 original size:11 final size:11
Alignment explanation
Indices: 24985101--24985134 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
24985091 GTCCTCAAGC
*
24985101 AAACAAAACAA
1 AAACAAAAGAA
*
24985112 AAACAAAAGTA
1 AAACAAAAGAA
24985123 AAACAAAAGAA
1 AAACAAAAGAA
24985134 A
1 A
24985135 CTAGAAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.79, C:0.12, G:0.06, T:0.03
Consensus pattern (11 bp):
AAACAAAAGAA
Found at i:24996328 original size:22 final size:22
Alignment explanation
Indices: 24996303--24996348 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
24996293 GTTATAAACC
* *
24996303 ATAATCAGGATGGCATAGAGCT
1 ATAATCAGGATGGCACAAAGCT
**
24996325 ATAATTGGGATGGCACAAAGCT
1 ATAATCAGGATGGCACAAAGCT
24996347 AT
1 AT
24996349 TGGTAACTGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (22 bp):
ATAATCAGGATGGCACAAAGCT
Found at i:25000616 original size:22 final size:22
Alignment explanation
Indices: 25000591--25000636 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
25000581 GTTATAAACC
25000591 ATAATCAGGATGGCACAAAGCT
1 ATAATCAGGATGGCACAAAGCT
*
25000613 ATAATCGGGATGGCACAAAGCT
1 ATAATCAGGATGGCACAAAGCT
25000635 AT
1 AT
25000637 CGGTAACTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (22 bp):
ATAATCAGGATGGCACAAAGCT
Found at i:25000804 original size:22 final size:22
Alignment explanation
Indices: 25000774--25000830 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
25000764 CGATTGGGAT
25000774 AAAGCCATAATCAAGATGGCAC
1 AAAGCCATAATCAAGATGGCAC
* * * * *
25000796 AGAGCCATATTTAGGTTGGCAC
1 AAAGCCATAATCAAGATGGCAC
25000818 AAAGCCATAATCA
1 AAAGCCATAATCA
25000831 GATTACGCGG
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.19
Consensus pattern (22 bp):
AAAGCCATAATCAAGATGGCAC
Found at i:25007140 original size:138 final size:138
Alignment explanation
Indices: 25006875--25007143 Score: 303
Period size: 138 Copynumber: 1.9 Consensus size: 138
25006865 AACCATAAAA
* * *
25006875 TGGGTCTGCTCACACAAGCTAGCGATTGGAATGTAAACTATATGATGCTACTCACACAAGCTAAC
1 TGGGTCTGCTCACACAAGCTAGCGATTAGAATGTAAACTACACGATGCTACTCACACAAGCTAAC
* ** *
25006940 GAGTATCCATAACAAATGTTGGAACTCAGCCACCAGTAAGACATTCAGGACCAACAATCGAAACA
66 GAGTATCCATAAAAAATGTCAGAACTCAGCCACCAGTAAGACATTCAGGACCAACAACCGAAACA
25007005 TAGTAACC
131 TAGTAACC
** * *
25007013 TGGGTCTGCTCACACAAGCTGATG-G-TTAGAATGTAAGTTACACGATGCTGCTCACACAAGCTG
1 TGGGTCTGCTCACACAAGCT-A-GCGATTAGAATGTAAACTACACGATGCTACTCACACAAGCTA
* * * * * * * *
25007076 ATGAGTATTCGTAAAAAATGTCAGACCTCAGCCATCGGT-AGAACATTC-GAGACCAGCACCCGA
64 ACGAGTATCCATAAAAAATGTCAGAACTCAGCCACCAGTAAG-ACATTCAG-GACCAACAACCGA
25007139 AACAT
127 AACAT
25007144 GAAAACCCTA
Statistics
Matches: 108, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
137 3 0.03
138 102 0.94
139 2 0.02
140 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.22
Consensus pattern (138 bp):
TGGGTCTGCTCACACAAGCTAGCGATTAGAATGTAAACTACACGATGCTACTCACACAAGCTAAC
GAGTATCCATAAAAAATGTCAGAACTCAGCCACCAGTAAGACATTCAGGACCAACAACCGAAACA
TAGTAACC
Found at i:25010769 original size:21 final size:21
Alignment explanation
Indices: 25010743--25010788 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
25010733 AAGAAAATGG
25010743 CTTTGTTTCATTTTGTTTTTA
1 CTTTGTTTCATTTTGTTTTTA
25010764 CTTTGTTTCATTTTGTTTTTA
1 CTTTGTTTCATTTTGTTTTTA
25010785 CTTT
1 CTTT
25010789 TGTGATTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.09, C:0.11, G:0.09, T:0.72
Consensus pattern (21 bp):
CTTTGTTTCATTTTGTTTTTA
Found at i:25010839 original size:10 final size:10
Alignment explanation
Indices: 25010826--25010862 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
25010816 AAAATTAGCT
25010826 TAATTAACTA
1 TAATTAACTA
25010836 TAATTAACTA
1 TAATTAACTA
* *
25010846 AAATTAATTA
1 TAATTAACTA
25010856 TAATTAA
1 TAATTAA
25010863 AAAATTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (10 bp):
TAATTAACTA
Found at i:25012006 original size:16 final size:16
Alignment explanation
Indices: 25011982--25012016 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
25011972 GGTTGGAGGG
*
25011982 AATGAAATAGGGTTGT
1 AATGAAATAGAGTTGT
*
25011998 AATGGAATAGAGTTGT
1 AATGAAATAGAGTTGT
25012014 AAT
1 AAT
25012017 CAGTAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (16 bp):
AATGAAATAGAGTTGT
Found at i:25012085 original size:44 final size:46
Alignment explanation
Indices: 25011998--25012086 Score: 112
Period size: 44 Copynumber: 2.0 Consensus size: 46
25011988 ATAGGGTTGT
* *
25011998 AATGGAATAGAGTTGTAATCAGTAATTCATTTGTTTGATTGAATGG
1 AATGGAATAGAGCTATAATCAGTAATTCATTTGTTTGATTGAATGG
* *
25012044 AATGGAATAGAGCTATAAT-AG-CATTC-TTGTGTTTGGTTGAATG
1 AATGGAATAGAGCTATAATCAGTAATTCATT-TGTTTGATTGAATG
25012087 AAATAGAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
43 2 0.05
44 17 0.45
45 2 0.05
46 17 0.45
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (46 bp):
AATGGAATAGAGCTATAATCAGTAATTCATTTGTTTGATTGAATGG
Found at i:25012252 original size:56 final size:59
Alignment explanation
Indices: 25012192--25012355 Score: 176
Period size: 63 Copynumber: 2.7 Consensus size: 59
25012182 AATAGGATTT
*
25012192 TTATTAAATATAATTTAATAAATAAT-A-A-ATAATTTA-ATCATACTTTAATATAATTA
1 TTATTAAATATAATTTAATAAATAATAATATATAATTTAGAACATAC-TTAATATAATTA
* *
25012248 TTATTAAATATAATTTGATAAAGATAATAATATATAATTTAGTAACATTCTTAATATAATTA
1 TTATTAAATATAATTTAAT-AA-ATAATAATATATAATTTAG-AACATACTTAATATAATTA
*
25012310 TTATTAAAATATGAA-TTAATAAAAATCATAATATATAATATTAGAA
1 TTATT-AAATAT-AATTTAAT--AAATAATAATATATAAT-TTAGAA
25012356 AAATAATATA
Statistics
Matches: 92, Mismatches: 5, Indels: 15
0.82 0.04 0.13
Matches are distributed among these distances:
56 18 0.20
57 2 0.02
58 5 0.05
59 1 0.01
60 1 0.01
61 8 0.09
62 17 0.18
63 31 0.34
64 9 0.10
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (59 bp):
TTATTAAATATAATTTAATAAATAATAATATATAATTTAGAACATACTTAATATAATTA
Found at i:25012462 original size:15 final size:16
Alignment explanation
Indices: 25012442--25012477 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
25012432 TAATTTAATT
25012442 ATCTT-CTATAAATGA
1 ATCTTCCTATAAATGA
*
25012457 ATCTTCCTATAAATTA
1 ATCTTCCTATAAATGA
25012473 ATCTT
1 ATCTT
25012478 AATTTTGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.36, C:0.17, G:0.03, T:0.44
Consensus pattern (16 bp):
ATCTTCCTATAAATGA
Found at i:25012656 original size:19 final size:18
Alignment explanation
Indices: 25012629--25012671 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
25012619 TGTTATAATC
25012629 TAAAAATGATAAATTTTAT
1 TAAAAATGA-AAATTTTAT
* *
25012648 TAAACATGAAATTTTTAT
1 TAAAAATGAAAATTTTAT
25012666 TAAAAA
1 TAAAAA
25012672 AAGAAGAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (18 bp):
TAAAAATGAAAATTTTAT
Found at i:25013376 original size:5 final size:5
Alignment explanation
Indices: 25013366--25013391 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
25013356 TAATCATAAC
25013366 CTAAA CTAAA CTAAA CTAAA CTAAA C
1 CTAAA CTAAA CTAAA CTAAA CTAAA C
25013392 AACTATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.23, G:0.00, T:0.19
Consensus pattern (5 bp):
CTAAA
Found at i:25020133 original size:12 final size:12
Alignment explanation
Indices: 25020094--25020125 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
25020084 TATATATATA
25020094 TATTATTTTACT
1 TATTATTTTACT
*
25020106 TAATATTTTACT
1 TATTATTTTACT
25020118 TATTATTT
1 TATTATTT
25020126 GTATTATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (12 bp):
TATTATTTTACT
Found at i:25021124 original size:21 final size:22
Alignment explanation
Indices: 25021100--25021142 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
25021090 CGTGAACCAG
* *
25021100 AATCATTTTTTAATAA-AATCA
1 AATCATTTATTAAAAACAATCA
*
25021121 AATCGTTTATTAAAAACAATCA
1 AATCATTTATTAAAAACAATCA
25021143 TTTTACGAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (22 bp):
AATCATTTATTAAAAACAATCA
Found at i:25026296 original size:31 final size:31
Alignment explanation
Indices: 25026261--25026321 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
25026251 TAATAATCCA
*
25026261 GTGACTTAAATAAAAACTTTTAAATAGTTCG
1 GTGACTTAAATAAAAACTTTCAAATAGTTCG
* *
25026292 GTGACTTAAATGAAAACTTTCAAATCGTTC
1 GTGACTTAAATAAAAACTTTCAAATAGTTC
25026322 AATGACTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (31 bp):
GTGACTTAAATAAAAACTTTCAAATAGTTCG
Found at i:25026328 original size:31 final size:31
Alignment explanation
Indices: 25026262--25026332 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
25026252 AATAATCCAG
* **
25026262 TGACTTAAATAAAAACTTTTAAATAGTTCGG
1 TGACTTAAATAAAAACTTTCAAATAGTTCAA
* *
25026293 TGACTTAAATGAAAACTTTCAAATCGTTCAA
1 TGACTTAAATAAAAACTTTCAAATAGTTCAA
25026324 TGAC-TAAAT
1 TGACTTAAAT
25026333 TATAATTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 5 0.14
31 30 0.86
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCAAATAGTTCAA
Found at i:25031092 original size:12 final size:12
Alignment explanation
Indices: 25031066--25031104 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
25031056 TGCTTCTTCT
* *
25031066 TTACTTACTTTC
1 TTACTTGCTTAC
*
25031078 TTACTTGTTTAC
1 TTACTTGCTTAC
25031090 TTACTTGCTTAC
1 TTACTTGCTTAC
25031102 TTA
1 TTA
25031105 AATAATTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.18, C:0.21, G:0.05, T:0.56
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:25031433 original size:50 final size:50
Alignment explanation
Indices: 25031306--25031500 Score: 164
Period size: 50 Copynumber: 3.9 Consensus size: 50
25031296 GATAATAACA
* * * ** * * **
25031306 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATATTTCCTA-TAC
1 TGCCAATGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * * **
25031355 TGCCAAT-TCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAATGT-CATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
* * *
25031405 TGCCCATGTCATGTCCCAGACATGGTCTTAC-GGAGGACCTCTCATCTTGG
1 TGCCAATGTCATGTCCCAGACATGGTCTTACATG-GGACCTCTCATATTGG
* *
25031455 TGCCAACG-CTATGTCCCAGACATGGTCTTACGTGGGACCTCTCATA
1 TGCCAATGTC-ATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
25031501 ATCTCAATAA
Statistics
Matches: 116, Mismatches: 24, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
49 37 0.32
50 77 0.66
51 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (50 bp):
TGCCAATGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATTGG
Found at i:25033385 original size:30 final size:29
Alignment explanation
Indices: 25033335--25033392 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
25033325 GGTAGGCTTG
* *
25033335 CACTCTGCTTTCTGTCTTCAACAGGCTCA
1 CACTCTGCTTACTATCTTCAACAGGCTCA
25033364 CACTCTAGCTTACTATCTTCAACAGGCTC
1 CACTCT-GCTTACTATCTTCAACAGGCTC
25033393 GCACCTTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (29 bp):
CACTCTGCTTACTATCTTCAACAGGCTCA
Found at i:25037182 original size:50 final size:50
Alignment explanation
Indices: 25037067--25037402 Score: 235
Period size: 51 Copynumber: 6.7 Consensus size: 50
25037057 TCATTCGATA
* * *
25037067 CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AGTTTTACAATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGCTTTACGACT
*
25037116 CACGTAGTAGCCTTCACATAGTACTACACACGTGAACAAGCTTTACGACT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGCTTTACGACT
* * *
25037166 CACGTAGTAGCCTTCAC-TCAGTACTACATACGTGCTCAAGCTTCTTA-GTTCT
1 CACGTAGTAGCCTTCACAT-AGTACTACACACGTGATCAAGC-T-TTACG-ACT
* ** * ** **
25037218 CA--TAGTAGCCTTCACTTAGTACTACACATATAACTGTAG-TTTACCGAGA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGA-TCAAGCTTTA-CGACT
* * * * * *
25037267 CACGTGGTAGCATTCACACAGTACTACACACGTGCTCAAAGCTTCT-TG-GT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGCTT-TACGACT
* * * * *
25037317 GCACATAGTAGCCTTCACTTAGTACCACACATGTGACCATTA-C-TTATCGA-T
1 -CACGTAGTAGCCTTCACATAGTACTACACACGTGATCA--AGCTTTA-CGACT
*
25037368 ACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 -CACGTAGTAGCCTTCACATAGTACTACACACGTG
25037403 TTCATCGATA
Statistics
Matches: 221, Mismatches: 46, Indels: 38
0.72 0.15 0.12
Matches are distributed among these distances:
48 3 0.01
49 41 0.19
50 74 0.33
51 92 0.42
52 10 0.05
53 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGCTTTACGACT
Found at i:25037347 original size:102 final size:101
Alignment explanation
Indices: 25037066--25037402 Score: 339
Period size: 102 Copynumber: 3.3 Consensus size: 101
25037056 ATCATTCGAT
* * * * *
25037066 ACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AG-TT-TTACAATTCACGTAGTAGCC
1 ACACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAGCTTCTT--AGTGCACATAGTAGCC
* * ** *
25037128 TTCACATAGTACTACACACGTGAACA--AGCTTTA-CGAC
64 TTCACTTAGTACCACACATATGAACATTA-C-TTACCGAG
* * * * *
25037165 TCACGTAGTAGCCTTCACTCAGTACTACATACGTGCTCAAGCTTCTTAGTTCTCATAGTAGCCTT
1 ACACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAGCTTCTTAGTGCACATAGTAGCCTT
* *
25037230 CACTTAGTACTACACATAT-AAC-TGTAGTTTACCGAG
66 CACTTAGTACCACACATATGAACAT-TA-CTTACCGAG
* * *
25037266 ACACGTGGTAGCATTCACACAGTACTACACACGTGCTCAAAGCTTCTTGGTGCACATAGTAGCCT
1 ACACGTAGTAGCCTTCACACAGTACTACACACGTGCTC-AAGCTTCTTAGTGCACATAGTAGCCT
* * * *
25037331 TCACTTAGTACCACACATGTGACCATTACTTATCGAT
65 TCACTTAGTACCACACATATGAACATTACTTACCGAG
25037368 ACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 ACACGTAGTAGCCTTCACACAGTACTACACACGTG
25037403 TTCATCGATA
Statistics
Matches: 199, Mismatches: 29, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
99 36 0.18
100 36 0.18
101 40 0.20
102 82 0.41
103 4 0.02
104 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (101 bp):
ACACGTAGTAGCCTTCACACAGTACTACACACGTGCTCAAGCTTCTTAGTGCACATAGTAGCCTT
CACTTAGTACCACACATATGAACATTACTTACCGAG
Found at i:25049006 original size:17 final size:18
Alignment explanation
Indices: 25048981--25049017 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
25048971 AATTTTCTAT
25048981 TCTATTCAAT-TT-AATC
1 TCTATTCAATATTCAATC
25048997 TCTATCTCAATATTCAATC
1 TCTAT-TCAATATTCAATC
25049016 TC
1 TC
25049018 AACCAAAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 5 0.28
17 5 0.28
18 2 0.11
19 6 0.33
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.46
Consensus pattern (18 bp):
TCTATTCAATATTCAATC
Found at i:25051280 original size:44 final size:43
Alignment explanation
Indices: 25051232--25051327 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
25051222 CACTAAAGTA
* * * *
25051232 CATCATCATATAAAATCGAAGTAGGTAAATTGTCACACACAGTG
1 CATCATCA-AGAAAATCAAAGTAGGGAAATTGACACACACAGTG
* * *
25051276 CATCATCAGGCAAATCAAAGTAGGGAAATTGACACACATAGTG
1 CATCATCAAGAAAATCAAAGTAGGGAAATTGACACACACAGTG
25051319 CATCATCAA
1 CATCATCAA
25051328 ACAAACGGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 36 0.82
44 8 0.18
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (43 bp):
CATCATCAAGAAAATCAAAGTAGGGAAATTGACACACACAGTG
Found at i:25051340 original size:43 final size:43
Alignment explanation
Indices: 25051244--25051346 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
25051234 TCATCATATA
* * **
25051244 AAATCGAAGTAGGTAAATTGTCACACACAGTGCATCATCAGGC
1 AAATCGAAGTAGGGAAATTGACACACACAGTGCATCATCAAAC
* *
25051287 AAATCAAAGTAGGGAAATTGACACACATAGTGCATCATCAAAC
1 AAATCGAAGTAGGGAAATTGACACACACAGTGCATCATCAAAC
25051330 AAA-CGGAAGTAGGGAAA
1 AAATC-GAAGTAGGGAAA
25051347 CTGGTACATG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 1 0.02
43 51 0.98
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.17
Consensus pattern (43 bp):
AAATCGAAGTAGGGAAATTGACACACACAGTGCATCATCAAAC
Found at i:25062245 original size:44 final size:44
Alignment explanation
Indices: 25062190--25062277 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
25062180 AACATGATCA
25062190 TCACAAGTGAATACATCCATAAACGGATTCAGGATCTTGTAACG
1 TCACAAGTGAATACATCCATAAACGGATTCAGGATCTTGTAACG
* * *
25062234 TCACGAGTGAATACATCCATAAATGGATTTAGGATCTTGTAACG
1 TCACAAGTGAATACATCCATAAACGGATTCAGGATCTTGTAACG
25062278 CCCTGATTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (44 bp):
TCACAAGTGAATACATCCATAAACGGATTCAGGATCTTGTAACG
Found at i:25068076 original size:53 final size:53
Alignment explanation
Indices: 25068007--25068128 Score: 244
Period size: 53 Copynumber: 2.3 Consensus size: 53
25067997 ACATAAAAAG
25068007 ATATATGAGTATGTATATATATGTATATTAAAATCATAAAGTATAAAAAGTAT
1 ATATATGAGTATGTATATATATGTATATTAAAATCATAAAGTATAAAAAGTAT
25068060 ATATATGAGTATGTATATATATGTATATTAAAATCATAAAGTATAAAAAGTAT
1 ATATATGAGTATGTATATATATGTATATTAAAATCATAAAGTATAAAAAGTAT
25068113 ATATATGAGTATGTAT
1 ATATATGAGTATGTAT
25068129 TAATGTGTTT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 69 1.00
ACGTcount: A:0.48, C:0.02, G:0.12, T:0.39
Consensus pattern (53 bp):
ATATATGAGTATGTATATATATGTATATTAAAATCATAAAGTATAAAAAGTAT
Found at i:25068210 original size:20 final size:20
Alignment explanation
Indices: 25068173--25068210 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
25068163 ATATATATAG
*
25068173 ATATGTAAACAAATTATAAA
1 ATATGTAAACAAAATATAAA
25068193 ATATGTATAA-AAAATATA
1 ATATGTA-AACAAAATATA
25068211 TGAGTACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (20 bp):
ATATGTAAACAAAATATAAA
Found at i:25069368 original size:45 final size:44
Alignment explanation
Indices: 25069316--25069894 Score: 509
Period size: 45 Copynumber: 13.0 Consensus size: 44
25069306 TAGGGTTTTT
* ** *
25069316 AGGGTTTATGGTTTTTAA-TTAAATTTGTTTTGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTT-AA-GGGTTTAGGGTTTTTAAGTTA
* * *
25069361 AGGGTTTAGGATTTTTAATTTTAAGGGTTTAAGGTTTTTAA-TTAA
1 AGGGTTTAGGGTTTTTAA-GTTAAGGGTTTAGGGTTTTTAAGTT-A
** * *
25069406 ATTAGTTTAGGGTTTTTAAGTTAAGGGCTTAGGGTTTTTAATTTTA
1 A-GGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAA-GTTA
* * * *
25069452 AGGGTTTAGGGTTTTTAAGTTAATGGTTTTGGGTTTTAAATTTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAA-GTTA
* **
25069497 AGGATTTAGGG-TTTTAA-TTAAATTAGTTTAGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTT-AA-GGGTTTAGGGTTTTTAAGTTA
*
25069541 AGGG-TTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTTTAA-TTAA
1 AGGGTTTAGGGTTTTTAAG-TTAAGGGTTTAGGGTTTTTAAGTT-A
** * * * *
25069585 ATTAGTTTAGGGTTTTTAAGTTAAGGG-TTAAGGTTTAT-GGTTT
1 A-GGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTA
** * *
25069628 AGGGTTTAGGGTTTTTATTTTTTAAGGGTTTTGGG-TTTTAAATTAA
1 AGGGTTTAGGGTTTTTA--AGTTAAGGGTTTAGGGTTTTTAAGTT-A
** * *
25069674 ATTAGTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTTA
1 A-GGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAA-GTTA
* *
25069720 AGGGTTTAGGATTTTTAATTTAAGGG-TTAGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTA
* *
25069763 AGGG-TTAAGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAA-GTTA
* **
25069807 AGAGTTTAGGGTTTTTAA-TTAAATTAGTTTAGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTT-AA-GGGTTTAGGGTTTTTAAGTTA
25069852 AGGGTTTAGGGTTTTT-AGTTTTAAGGGTTTAGGGTTTTTAAGT
1 AGGGTTTAGGGTTTTTAAG--TTAAGGGTTTAGGGTTTTTAAGT
25069895 AATAACTCAA
Statistics
Matches: 436, Mismatches: 67, Indels: 62
0.77 0.12 0.11
Matches are distributed among these distances:
42 32 0.07
43 31 0.07
44 81 0.19
45 210 0.48
46 60 0.14
47 22 0.05
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (44 bp):
AGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTA
Found at i:25069376 original size:23 final size:22
Alignment explanation
Indices: 25069316--25069894 Score: 509
Period size: 23 Copynumber: 25.9 Consensus size: 22
25069306 TAGGGTTTTT
*
25069316 AGGGTTTATGGTTTTTAA-TTAA
1 AGGGTTTAGGGTTTTTAAGTT-A
** *
25069338 ATTTGTTTTGGGTTTTTAAGTTA
1 A-GGGTTTAGGGTTTTTAAGTTA
* *
25069361 AGGGTTTAGGATTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAA-GTTA
*
25069384 AGGGTTTAAGGTTTTTAA-TTAA
1 AGGGTTTAGGGTTTTTAAGTT-A
**
25069406 ATTAGTTTAGGGTTTTTAAGTTA
1 A-GGGTTTAGGGTTTTTAAGTTA
* *
25069429 AGGGCTTAGGGTTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAA-GTTA
25069452 AGGGTTTAGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTA
* * * *
25069474 ATGGTTTTGGGTTTTAAATTTTA
1 AGGGTTTAGGGTTTTTAA-GTTA
*
25069497 AGGATTTAGGG-TTTTAA-TTAA
1 AGGGTTTAGGGTTTTTAAGTT-A
**
25069518 ATTAGTTTAGGGTTTTTAAGTTA
1 A-GGGTTTAGGGTTTTTAAGTTA
25069541 AGGG-TTAGGGTTTTTAAGTTTA
1 AGGGTTTAGGGTTTTTAAG-TTA
*
25069563 AGGGTTTAAGGTTTTTAA-TTAA
1 AGGGTTTAGGGTTTTTAAGTT-A
**
25069585 ATTAGTTTAGGGTTTTTAAGTTA
1 A-GGGTTTAGGGTTTTTAAGTTA
* * * *
25069608 AGGG-TTAAGGTTTAT-GGTTT
1 AGGGTTTAGGGTTTTTAAGTTA
**
25069628 AGGGTTTAGGGTTTTTATTTTTTA
1 AGGGTTTAGGGTTTTTA--AGTTA
* *
25069652 AGGGTTTTGGG-TTTTAAATTAA
1 AGGGTTTAGGGTTTTTAAGTT-A
**
25069674 ATTAGTTTAGGGTTTTTAAGTTA
1 A-GGGTTTAGGGTTTTTAAGTTA
* *
25069697 AGGGTTTAAGGTTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAA-GTTA
* *
25069720 AGGGTTTAGGATTTTTAATTTA
1 AGGGTTTAGGGTTTTTAAGTTA
25069742 AGGG-TTAGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTA
*
25069763 AGGG-TTAAGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTA
*
25069784 AGGGTTTAGGGTTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAA-GTTA
*
25069807 AGAGTTTAGGGTTTTTAA-TTAA
1 AGGGTTTAGGGTTTTTAAGTT-A
**
25069829 ATTAGTTTAGGGTTTTTAAGTTA
1 A-GGGTTTAGGGTTTTTAAGTTA
25069852 AGGGTTTAGGGTTTTT-AGTTTTA
1 AGGGTTTAGGGTTTTTAAG--TTA
25069875 AGGGTTTAGGGTTTTTAAGT
1 AGGGTTTAGGGTTTTTAAGT
25069895 AATAACTCAA
Statistics
Matches: 454, Mismatches: 70, Indels: 66
0.77 0.12 0.11
Matches are distributed among these distances:
20 9 0.02
21 83 0.18
22 123 0.27
23 207 0.46
24 32 0.07
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (22 bp):
AGGGTTTAGGGTTTTTAAGTTA
Found at i:25069529 original size:67 final size:67
Alignment explanation
Indices: 25069455--25069821 Score: 263
Period size: 66 Copynumber: 5.5 Consensus size: 67
25069445 AATTTTAAGG
* *
25069455 GTTTAGGGTTTTTAAGTTAATGGTTTTGGGTTTTAAATTTTAAGGATTT-AGGGTTTTAATTAAA
1 GTTTAGGGTTTTTAAGTTAA-GGTTTAGGGTTTTAAAGTTTAAGGATTTAAGGGTTTTAATTAAA
25069519 TTA
65 TTA
* * * *
25069522 GTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTTTAATTAAAT
1 GTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTAAAGTTTAAGGATTTAAGGGTTTTAATTAAAT
25069587 TA
66 TA
* * ** * * **
25069589 GTTTAGGGTTTTTAAGTTAAGGGTTAAGG-TTTATGGTTT-AGGGTTT-AGGGTTTTTATT-TTT
1 GTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTAAAGTTTAAGGATTTAAGGGTTTTAATTAAAT
25069650 TAA
66 T-A
* * * * * *
25069653 GGGTTTTGGG-TTTTAAATTAAATTAGTTTAGGGTTTTTAAG-TTAAGGGTTTAAGGTTTTTAAT
1 --GTTTAGGGTTTTTAAGTT-AA--GGTTTAGGGTTTTAAAGTTTAAGGATTTAAGGGTTTTAA-
* **
25069716 TTTAA-GG
60 TTAAATTA
* * * * * *
25069723 GTTTAGGATTTTTAATTTAAGGGTTAGGGTTTTTAAG-TTAAGG-GTTAAGGTTTTTAAGTT-AA
1 GTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTAAAGTTTAAGGATTTAAGGGTTTTAA-TTAAA
**
25069785 -GG
65 TTA
*
25069787 GTTTAGGGTTTTTAATTTTAAGAGTTTAGGGTTTT
1 GTTTAGGGTTTTTAA-GTTAAG-GTTTAGGGTTTT
25069822 TAATTAAATT
Statistics
Matches: 248, Mismatches: 37, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
63 2 0.01
64 29 0.12
65 36 0.15
66 71 0.29
67 65 0.26
68 16 0.06
69 19 0.08
70 8 0.03
71 2 0.01
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (67 bp):
GTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTAAAGTTTAAGGATTTAAGGGTTTTAATTAAAT
TA
Found at i:25069762 original size:155 final size:154
Alignment explanation
Indices: 25069364--25069892 Score: 704
Period size: 155 Copynumber: 3.4 Consensus size: 154
25069354 TAAGTTAAGG
* * * ** *
25069364 GTTTAGGATTTTTAATTTTAAGGGTTTAAGGTTTTTAA-TTAAATTAGTTTAGGGTTTTTAAGTT
1 GTTTAGGGTTTTTAA-GTTAAGGGTTTAAGGTTTTTAATTTTAA-GGGTTTAGGGTTTTTAATTT
* * * * *
25069428 AAGGGCTTAGGGTTTTTAATTTTAAGGGTTTAGGGTTTTTAAGTTAATGGTTTTGGGTTTTAAAT
64 AAGGG-TTAGGGTTTTTAA-GTTAAGGG-TTAAGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAT
*
25069493 TTTAAGGATTTAGGGTTTTAATTAAATTA
126 TTTAAGGGTTTAGGGTTTTAATTAAATTA
* * * *
25069522 GTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTTTAATTAAA
1 GTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTTAAGGGTTTAGGGTTTTTAATTTAA
* * * * * *
25069586 TTAGTTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTAT-GGTTTAGGGTTTAGGGTTTTTATTTTT
66 --GGGTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAGGGTTTAGGGTTTTTA-ATTT
*
25069650 TAAGGGTTTTGGGTTTTAAATTAAATTA
128 TAAGGGTTTAGGGTTTT-AATTAAATTA
*
25069678 GTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTTAAGGGTTTAGGATTTTTAATTTAA
1 GTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTTAAGGGTTTAGGGTTTTTAATTTAA
25069743 GGGTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTTTAA
66 GGGTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTTTAA
*
25069808 GAGTTTAGGGTTTTTAATTAAATTA
131 GGGTTTAGGG-TTTTAATTAAATTA
* *
25069833 GTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAGTTTTAAGGGTTTAGGGTTTTTAA
1 GTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTTAAGGGTTTAGGGTTTTTAA
25069893 GTAATAACTC
Statistics
Matches: 325, Mismatches: 38, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
154 17 0.05
155 140 0.43
156 93 0.29
157 60 0.18
158 15 0.05
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.49
Consensus pattern (154 bp):
GTTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTTTTAATTTTAAGGGTTTAGGGTTTTTAATTTAA
GGGTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTTTAA
GGGTTTAGGGTTTTAATTAAATTA
Found at i:25071062 original size:7 final size:7
Alignment explanation
Indices: 25071052--25071077 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
25071042 TTATATACAT
25071052 AATACTA
1 AATACTA
25071059 AATACTA
1 AATACTA
25071066 AATACTA
1 AATACTA
25071073 AATAC
1 AATAC
25071078 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:25071284 original size:20 final size:20
Alignment explanation
Indices: 25071247--25071284 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
25071237 TTTATTTTTA
*
25071247 AAAATCTACATAATAATTAT
1 AAAATCTACATAAAAATTAT
25071267 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
25071285 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTAT
Found at i:25072287 original size:14 final size:12
Alignment explanation
Indices: 25072227--25072283 Score: 68
Period size: 11 Copynumber: 5.0 Consensus size: 12
25072217 GGAGTTAAGA
25072227 GAAATTTG-GAAG
1 GAAATTTGAG-AG
25072239 G-AATTTGAGAG
1 GAAATTTGAGAG
*
25072250 CAAA-TTGAGAG
1 GAAATTTGAGAG
25072261 GAAATTT-AGAG
1 GAAATTTGAGAG
25072272 GAAATTTGAGAG
1 GAAATTTGAGAG
25072284 AGGATTAGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
11 29 0.74
12 10 0.26
ACGTcount: A:0.42, C:0.02, G:0.32, T:0.25
Consensus pattern (12 bp):
GAAATTTGAGAG
Found at i:25075595 original size:24 final size:24
Alignment explanation
Indices: 25075568--25075622 Score: 87
Period size: 24 Copynumber: 2.3 Consensus size: 24
25075558 AATTAATTAC
25075568 AATAAATAATTAAAATGA-TTATAA
1 AATAAATAATTAAAAT-ATTTATAA
25075592 AATAAATAATTAAAATATTTATAA
1 AATAAATAATTAAAATATTTATAA
25075616 AA-AAATA
1 AATAAATA
25075623 TTATGACACA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.20
24 24 0.80
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (24 bp):
AATAAATAATTAAAATATTTATAA
Found at i:25075607 original size:13 final size:13
Alignment explanation
Indices: 25075561--25075608 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
25075551 CAATAGTAAT
*
25075561 TAATTACAATAAA
1 TAATTAAAATAAA
*
25075574 TAATTAAAAT-GA
1 TAATTAAAATAAA
*
25075586 TTA-TAAAATAAA
1 TAATTAAAATAAA
25075598 TAATTAAAATA
1 TAATTAAAATA
25075609 TTTATAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
11 6 0.21
12 6 0.21
13 16 0.57
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (13 bp):
TAATTAAAATAAA
Found at i:25076013 original size:25 final size:23
Alignment explanation
Indices: 25075980--25076025 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
25075970 GACATTATAA
25075980 TATAATAAATAATTAAAAATATATC
1 TATAATAAATAA-T-AAAATATATC
*
25076005 TATATTAAATAATAAAATATA
1 TATAATAAATAATAAAATATA
25076026 AATTACAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 8 0.40
24 1 0.05
25 11 0.55
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (23 bp):
TATAATAAATAATAAAATATATC
Found at i:25076383 original size:21 final size:21
Alignment explanation
Indices: 25076347--25076388 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
25076337 ACAGGATAGG
* * *
25076347 TGACGTGGCTAGTTAATTAGC
1 TGACGTGGCCAATTAACTAGC
25076368 TGACGTGGCCAATTAACTAGC
1 TGACGTGGCCAATTAACTAGC
25076389 CACATTAGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (21 bp):
TGACGTGGCCAATTAACTAGC
Found at i:25076462 original size:3 final size:3
Alignment explanation
Indices: 25076456--25076500 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
25076446 CTAATAACGG
* * * *
25076456 AGA AGA AGA AGA AGA ACA AGA ACA AGA ACA AGA ACA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
25076501 GACTGTAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.67, C:0.09, G:0.24, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:25076467 original size:6 final size:6
Alignment explanation
Indices: 25076456--25076500 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
25076446 CTAATAACGG
* * *
25076456 AGAAGA AGAAGA AGAACA AGAACA AGAACA AGAACA AGAAGA AGA
1 AGAACA AGAACA AGAACA AGAACA AGAACA AGAACA AGAACA AGA
25076501 GACTGTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.67, C:0.09, G:0.24, T:0.00
Consensus pattern (6 bp):
AGAACA
Found at i:25089418 original size:4 final size:4
Alignment explanation
Indices: 25089389--25089754 Score: 484
Period size: 4 Copynumber: 92.0 Consensus size: 4
25089379 CTAACATTTT
* * * * *
25089389 CATA CCTA CCTA CATA CATA CCTA CATA CATA AATA CATA CATA CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * *
25089437 CATG CATG CATG CATG CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
25089485 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATG CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * *
25089533 CAAA CATG CATG CATA CATG CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
25089581 CATG CATA CAAA CATG CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * * * * *
25089629 CATG CATA CATA CATA CATG CATA CATA CATG CATA CATG TATA CATG
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
* * *
25089677 CATA CATA CATA CATA CATA CATA CATA CATA CATG TATC CAT- -ATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
25089723 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
25089755 TTTACTAAAG
Statistics
Matches: 322, Mismatches: 38, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
2 2 0.01
4 320 0.99
ACGTcount: A:0.45, C:0.25, G:0.05, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:25097037 original size:25 final size:25
Alignment explanation
Indices: 25096982--25097039 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
25096972 AGTAAGCTCC
* * * *
25096982 TCCGAGTTAAATAACGGTAAGCTTT
1 TCCGAGCTAAATAACGATAAACTCT
* *
25097007 TTCGAGCTAAATAATGATAAACTCT
1 TCCGAGCTAAATAACGATAAACTCT
25097032 TCCGAGCT
1 TCCGAGCT
25097040 GAGTATCGGT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (25 bp):
TCCGAGCTAAATAACGATAAACTCT
Found at i:25100440 original size:20 final size:19
Alignment explanation
Indices: 25100417--25100478 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 19
25100407 TATGTTAGAA
25100417 TATTTAAAAATTATAAAAAT
1 TATTTAAAAATTAT-AAAAT
*
25100437 TA-TTAGAAAATT-CAAAA-
1 TATTTA-AAAATTATAAAAT
25100454 TATTGTAAAAAATTATAAAAT
1 TATT-T-AAAAATTATAAAAT
25100475 TATT
1 TATT
25100479 AGAAATTGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
17 2 0.06
18 5 0.15
19 10 0.29
20 13 0.38
21 4 0.12
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (19 bp):
TATTTAAAAATTATAAAAT
Found at i:25100442 original size:28 final size:27
Alignment explanation
Indices: 25100392--25100469 Score: 77
Period size: 28 Copynumber: 2.7 Consensus size: 27
25100382 TATATAATTT
* *
25100392 TTTAAAAATTT-AAAATATGTTAGAATA
1 TTTAAAAATTTAAAAAT-TATTAGAAAA
25100419 TTTAAAAATTATAAAAATTATTAGAAAA
1 TTTAAAAATT-TAAAAATTATTAGAAAA
*
25100447 TTCAAAATATTGTAAAAAATTAT
1 TTTAAAA-ATT-T-AAAAATTAT
25100470 AAAATTATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
27 10 0.23
28 15 0.35
29 9 0.21
30 9 0.21
ACGTcount: A:0.55, C:0.01, G:0.05, T:0.38
Consensus pattern (27 bp):
TTTAAAAATTTAAAAATTATTAGAAAA
Found at i:25100474 original size:47 final size:46
Alignment explanation
Indices: 25100372--25100477 Score: 108
Period size: 47 Copynumber: 2.3 Consensus size: 46
25100362 TATAATTAGG
* * * * * * *
25100372 ATTATAAAAATATATAATTTTTTAAAAATTTAAAATATGTTAGAAT
1 ATTATAAAATTATAAAAATTATTAAAAATTCAAAATATGTTAAAAA
25100418 ATT-TAAAAATTATAAAAATTATTAGAAAATTCAAAATAT-TGTAAAAA
1 ATTAT-AAAATTATAAAAATTATTA-AAAATTCAAAATATGT-TAAAAA
25100465 ATTATAAAATTAT
1 ATTATAAAATTAT
25100478 TAGAAATTGT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.02
46 19 0.39
47 28 0.57
48 1 0.02
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.40
Consensus pattern (46 bp):
ATTATAAAATTATAAAAATTATTAAAAATTCAAAATATGTTAAAAA
Found at i:25103761 original size:18 final size:18
Alignment explanation
Indices: 25103740--25103780 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
25103730 AGTTTATATA
25103740 ATTTTTATAT-ACATTTAT
1 ATTTTT-TATGACATTTAT
*
25103758 ATTTTTTATGATATTTAT
1 ATTTTTTATGACATTTAT
25103776 ATTTT
1 ATTTT
25103781 CATGTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (18 bp):
ATTTTTTATGACATTTAT
Found at i:25105319 original size:11 final size:11
Alignment explanation
Indices: 25105303--25105341 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
25105293 TTATATCATA
25105303 TATAAATTAAT
1 TATAAATTAAT
*
25105314 TATAAAGTATAT
1 TATAAATTA-AT
25105326 TATTAAATTAAT
1 TA-TAAATTAAT
25105338 TATA
1 TATA
25105342 TTATAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:25105353 original size:14 final size:17
Alignment explanation
Indices: 25105321--25105358 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
25105311 AATTATAAAG
25105321 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
25105338 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
25105352 TATATTA
1 TATATTA
25105359 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:25106284 original size:3 final size:3
Alignment explanation
Indices: 25106276--25106310 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
25106266 GTGAGGTAAG
25106276 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
25106311 GTGGGAATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:25109574 original size:19 final size:19
Alignment explanation
Indices: 25109552--25109592 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
25109542 ATACCACCAT
25109552 TATTTA-TTTATATATTTTC
1 TATTTAGTTTAT-TATTTTC
*
25109571 TATTTAGTTTATTTTTTTC
1 TATTTAGTTTATTATTTTC
25109590 TAT
1 TAT
25109593 CTTTAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (19 bp):
TATTTAGTTTATTATTTTC
Found at i:25109698 original size:25 final size:25
Alignment explanation
Indices: 25109636--25109705 Score: 70
Period size: 27 Copynumber: 2.8 Consensus size: 25
25109626 ACATATGCTG
**
25109636 TAAAATTAAATATATTTAACTTCTT
1 TAAAATTAAATATATTTAACTTAGT
** *
25109661 TCATAAAAAAAATATATTTGACTTAGT
1 T-A-AAATTAAATATATTTAACTTAGT
25109688 TAAAATTAAATAT-TTTAA
1 TAAAATTAAATATATTTAA
25109706 ATTTATATTT
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
24 4 0.11
25 10 0.29
26 2 0.06
27 19 0.54
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (25 bp):
TAAAATTAAATATATTTAACTTAGT
Found at i:25111160 original size:22 final size:23
Alignment explanation
Indices: 25111134--25111178 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
25111124 AAAAAGAAAA
25111134 ATAAATAAAA-AATAAT-AATTAC
1 ATAAA-AAAATAATAATAAATTAC
25111156 ATAAAAAAATAATAATAAATTAC
1 ATAAAAAAATAATAATAAATTAC
25111179 GAAATTGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 11 0.52
23 6 0.29
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAAAATAATAATAAATTAC
Found at i:25113079 original size:22 final size:20
Alignment explanation
Indices: 25113053--25113097 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
25113043 TGTAAATTAA
*
25113053 TATTTTTAATTTAGTCTCACAT
1 TATTTTTAA--TAATCTCACAT
*
25113075 TATTTTTGATAATCTCACAT
1 TATTTTTAATAATCTCACAT
25113095 TAT
1 TAT
25113098 GAGTAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
22 8 0.38
ACGTcount: A:0.29, C:0.13, G:0.04, T:0.53
Consensus pattern (20 bp):
TATTTTTAATAATCTCACAT
Found at i:25116724 original size:40 final size:39
Alignment explanation
Indices: 25116650--25116726 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 39
25116640 AAACTGTTCA
* *
25116650 TCCACGTCAGCAAATCGCGTCCTAGAGGGAGCGATTTGTG
1 TCCACGTAAGCAAATCGCG-CCTACAGGGAGCGATTTGTG
*
25116690 TCCACGTAAGCAAATCGCG-CTGACATGGACGCGATTT
1 TCCACGTAAGCAAATCGCGCCT-ACAGGGA-GCGATTT
25116727 CCTAGCGCGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 2 0.06
39 5 0.16
40 25 0.78
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (39 bp):
TCCACGTAAGCAAATCGCGCCTACAGGGAGCGATTTGTG
Found at i:25116907 original size:19 final size:19
Alignment explanation
Indices: 25116883--25116924 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
25116873 TATGAAACAC
25116883 TAAAAATTCCTACAATTCA
1 TAAAAATTCCTACAATTCA
*
25116902 TAAAAATTCCTACCATTCA
1 TAAAAATTCCTACAATTCA
25116921 TAAA
1 TAAA
25116925 TATAATTGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAAATTCCTACAATTCA
Found at i:25118123 original size:78 final size:78
Alignment explanation
Indices: 25118039--25118227 Score: 324
Period size: 78 Copynumber: 2.4 Consensus size: 78
25118029 TGTTTTAAGT
* *
25118039 ATGTAAGATTCGAAACTAATAATAACACATATGAGTACAATTTATTTAAGTAATTTATCAAAACA
1 ATGTAAGATTCGAAACTAATAATAACACATATGAATACAATTTACTTAAGTAATTTATCAAAACA
*
25118104 CTTAAATAATAAA
66 CTAAAATAATAAA
* *
25118117 ATGTAAGATTTGAAACTAATAATAGCACATATGAATACAATTTACTTAAGTAATTTATCAAAACA
1 ATGTAAGATTCGAAACTAATAATAACACATATGAATACAATTTACTTAAGTAATTTATCAAAACA
*
25118182 CTAAAATAATGAA
66 CTAAAATAATAAA
25118195 ATGTAAGATTCGAAACTAATAATAACACATATG
1 ATGTAAGATTCGAAACTAATAATAACACATATG
25118228 CAATGTATAT
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 103 1.00
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.31
Consensus pattern (78 bp):
ATGTAAGATTCGAAACTAATAATAACACATATGAATACAATTTACTTAAGTAATTTATCAAAACA
CTAAAATAATAAA
Found at i:25118830 original size:15 final size:15
Alignment explanation
Indices: 25118810--25118841 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
25118800 GAAGATAATC
25118810 TCAAAAAATAATTAA
1 TCAAAAAATAATTAA
25118825 TCAAAAAATAATTAA
1 TCAAAAAATAATTAA
25118840 TC
1 TC
25118842 TAAATTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.28
Consensus pattern (15 bp):
TCAAAAAATAATTAA
Found at i:25124741 original size:39 final size:39
Alignment explanation
Indices: 25124687--25124767 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
25124677 ATGCAATCGA
*
25124687 TTTGTTCATCTTTAAAGTTTTACTTGAACTATTGTTTTC
1 TTTGTTCATCTTTAAAGCTTTACTTGAACTATTGTTTTC
25124726 TTTGTTCATCTTTAAAGCTTTACTTGAACTATTGTTTTC
1 TTTGTTCATCTTTAAAGCTTTACTTGAACTATTGTTTTC
25124765 TTT
1 TTT
25124768 TCACTTTAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.20, C:0.14, G:0.10, T:0.57
Consensus pattern (39 bp):
TTTGTTCATCTTTAAAGCTTTACTTGAACTATTGTTTTC
Found at i:25125314 original size:62 final size:62
Alignment explanation
Indices: 25125153--25125410 Score: 363
Period size: 62 Copynumber: 4.1 Consensus size: 62
25125143 ATACAGTGCA
* * * * * * *
25125153 ATTTCCCCATTCCCATTTCCCCTCTTCCACCGATTAAAGCCCCAAACCCTGTGCCCTCAGTGCA
1 ATTT-CCCATTCCCATTTCCCCTCTTCCACCAATCAAAGTCCCAAACCCCGTGCCCTC-CTCCC
* *
25125217 ATTTCCCCATTCCCATTTCCCCTCTTCCACTAATCAAAGTCCCAAACCCCCTGCCCTCCTCCC
1 ATTT-CCCATTCCCATTTCCCCTCTTCCACCAATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
*
25125280 ATTTCACATTCCCATTTCCCCTCTTCCACCAATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
1 ATTTCCCATTCCCATTTCCCCTCTTCCACCAATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
* ** *
25125342 ATTTCCCATTCCCATTTCTCCTCTTCCACTGATCAAAGTTCCAAACCCCGTGCCCTCCTCCC
1 ATTTCCCATTCCCATTTCCCCTCTTCCACCAATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
25125404 ATTTCCC
1 ATTTCCC
25125411 CTCTTCCACT
Statistics
Matches: 177, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 119 0.67
63 6 0.03
64 52 0.29
ACGTcount: A:0.19, C:0.47, G:0.06, T:0.28
Consensus pattern (62 bp):
ATTTCCCATTCCCATTTCCCCTCTTCCACCAATCAAAGTCCCAAACCCCGTGCCCTCCTCCC
Found at i:25127248 original size:21 final size:21
Alignment explanation
Indices: 25127210--25127294 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
25127200 CCAAGAACAA
* * *
25127210 AGCAAAAAAGAGGGGAGAAATC
1 AGCAAAAACGA-GAGAGAAACC
25127232 AGCAAAAACGAGAGAGAAACC
1 AGCAAAAACGAGAGAGAAACC
* * *
25127253 AGCAAGAACAAGGGAGAAACC
1 AGCAAAAACGAGAGAGAAACC
*
25127274 AGCAAGAACGAGAGGAGAAAC
1 AGCAAAAACGAGA-GAGAAAC
25127295 TATTGTTTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
21 37 0.69
22 17 0.31
ACGTcount: A:0.54, C:0.15, G:0.29, T:0.01
Consensus pattern (21 bp):
AGCAAAAACGAGAGAGAAACC
Found at i:25127603 original size:59 final size:59
Alignment explanation
Indices: 25127511--25127688 Score: 347
Period size: 59 Copynumber: 3.0 Consensus size: 59
25127501 GAAACCAAGA
*
25127511 TATCCAAACAACCAAGCAAGCCACTGTGGTGTAGTGAGATTGAAAATCAAGGTAAAAAT
1 TATCCAAACAACCAAGCAAGTCACTGTGGTGTAGTGAGATTGAAAATCAAGGTAAAAAT
25127570 TATCCAAACAACCAAGCAAGTCACTGTGGTGTAGTGAGATTGAAAATCAAGGTAAAAAT
1 TATCCAAACAACCAAGCAAGTCACTGTGGTGTAGTGAGATTGAAAATCAAGGTAAAAAT
25127629 TATCCAAACAACCAAGCAAGTCACTGTGGTGTAGTGAGATTGAAAATCAAGGTAAAAAT
1 TATCCAAACAACCAAGCAAGTCACTGTGGTGTAGTGAGATTGAAAATCAAGGTAAAAAT
25127688 T
1 T
25127689 TCAACGCACT
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 118 1.00
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (59 bp):
TATCCAAACAACCAAGCAAGTCACTGTGGTGTAGTGAGATTGAAAATCAAGGTAAAAAT
Found at i:25130671 original size:15 final size:16
Alignment explanation
Indices: 25130651--25130688 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
25130641 TTAATTTTGT
*
25130651 ATTTTAATTTC-ATCA
1 ATTTTAATTTCTATAA
25130666 ATTTTAATTTCTATAA
1 ATTTTAATTTCTATAA
25130682 ATTTTAA
1 ATTTTAA
25130689 AATTTTAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTAATTTCTATAA
Found at i:25139332 original size:12 final size:13
Alignment explanation
Indices: 25139315--25139343 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
25139305 ATCATACATG
25139315 AATAAATAAA-GC
1 AATAAATAAATGC
25139327 AATAAATAAATGC
1 AATAAATAAATGC
25139340 AATA
1 AATA
25139344 GTTATAGTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:25144714 original size:57 final size:57
Alignment explanation
Indices: 25144653--25144770 Score: 236
Period size: 57 Copynumber: 2.1 Consensus size: 57
25144643 CAATAAGAGT
25144653 TTACAAGTACAAACATATTTATAACACTTATCTTGCCCTTAAACAATCTCACTGGCA
1 TTACAAGTACAAACATATTTATAACACTTATCTTGCCCTTAAACAATCTCACTGGCA
25144710 TTACAAGTACAAACATATTTATAACACTTATCTTGCCCTTAAACAATCTCACTGGCA
1 TTACAAGTACAAACATATTTATAACACTTATCTTGCCCTTAAACAATCTCACTGGCA
25144767 TTAC
1 TTAC
25144771 TTAATTGGCC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (57 bp):
TTACAAGTACAAACATATTTATAACACTTATCTTGCCCTTAAACAATCTCACTGGCA
Found at i:25145194 original size:8 final size:7
Alignment explanation
Indices: 25145168--25145198 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
25145158 TGACCCGGGT
25145168 CCCAAAA
1 CCCAAAA
25145175 CCCAAAA
1 CCCAAAA
25145182 CCCAAACA
1 CCCAAA-A
25145190 CCCAAAA
1 CCCAAAA
25145197 CC
1 CC
25145199 TAAACTGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (7 bp):
CCCAAAA
Found at i:25145194 original size:15 final size:15
Alignment explanation
Indices: 25145168--25145203 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
25145158 TGACCCGGGT
25145168 CCCAAA-ACCCAAAA
1 CCCAAACACCCAAAA
25145182 CCCAAACACCCAAAA
1 CCCAAACACCCAAAA
*
25145197 CCTAAAC
1 CCCAAAC
25145204 TGCTACCCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.53, C:0.44, G:0.00, T:0.03
Consensus pattern (15 bp):
CCCAAACACCCAAAA
Found at i:25145646 original size:14 final size:15
Alignment explanation
Indices: 25145627--25145658 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
25145617 CGGCATAAGA
25145627 TTTATTTTT-ATTTT
1 TTTATTTTTGATTTT
25145641 TTTATTTTTGATTTT
1 TTTATTTTTGATTTT
25145656 TTT
1 TTT
25145659 CCTTTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.84
Consensus pattern (15 bp):
TTTATTTTTGATTTT
Found at i:25165207 original size:34 final size:34
Alignment explanation
Indices: 25165169--25165289 Score: 109
Period size: 34 Copynumber: 3.6 Consensus size: 34
25165159 TAGTTTGCTA
* ** *
25165169 ATAACATAGGTTCGCATATCAGCGTAAGTCATAC
1 ATAACATAGGTTCGCATAACAGAATAAGTCACAC
** *
25165203 ATAACATAGACTCGCATAACAGAATAATTCACAC
1 ATAACATAGGTTCGCATAACAGAATAAGTCACAC
* * * **
25165237 ATAACATAGGTTCGGATCACAGTAT-AGTTTGCAC
1 ATAACATAGGTTCGCATAACAGAATAAG-TCACAC
*
25165271 ATAATATAGGTTCGCATAA
1 ATAACATAGGTTCGCATAA
25165290 AACATAGGTT
Statistics
Matches: 68, Mismatches: 18, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
33 1 0.01
34 67 0.99
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (34 bp):
ATAACATAGGTTCGCATAACAGAATAAGTCACAC
Found at i:25165373 original size:68 final size:68
Alignment explanation
Indices: 25165169--25165381 Score: 175
Period size: 68 Copynumber: 3.1 Consensus size: 68
25165159 TAGTTTGCTA
* * **
25165169 ATAACATAGGTTCGCAT-ATCAGCGTA-AG-TCATACATAACATAGACTCGCATAACAGA-ATA-
1 ATAACATAGGTTCGCATCA-CA--GTATAGTTCACACATAATATAGGTTCGCATAA-A-ACATAG
* *
25165229 ATTCACAC
61 ATTCGCAT
* ** * *
25165237 ATAACATAGGTTCGGATCACAGTATAGTTTGCACATAATATAGGTTCGCATAAAACATAGGTTTG
1 ATAACATAGGTTCGCATCACAGTATAGTTCACACATAATATAGGTTCGCATAAAACATAGATTCG
25165302 CAT
66 CAT
* * * ** **
25165305 ATAACATGGGTTCGCATCATAGTATAGTTCACACATAGTATAGGTTTTCATATCACATAGATTCG
1 ATAACATAGGTTCGCATCACAGTATAGTTCACACATAATATAGGTTCGCATAAAACATAGATTCG
25165370 CAT
66 CAT
*
25165373 ATAGCATAG
1 ATAACATAG
25165382 TAAGGCTCGC
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
66 4 0.03
67 6 0.05
68 104 0.90
69 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (68 bp):
ATAACATAGGTTCGCATCACAGTATAGTTCACACATAATATAGGTTCGCATAAAACATAGATTCG
CAT
Found at i:25165380 original size:17 final size:17
Alignment explanation
Indices: 25165276--25165381 Score: 72
Period size: 17 Copynumber: 6.2 Consensus size: 17
25165266 TGCACATAAT
* *
25165276 ATAGGTTCGCATAAAAC
1 ATAGGTTCGCATATAGC
* *
25165293 ATAGGTTTGCATATAAC
1 ATAGGTTCGCATATAGC
* *
25165310 ATGGGTTCGCATCATAGT
1 ATAGGTTCGCAT-ATAGC
* * *
25165328 ATA-GTTCACACATAGT
1 ATAGGTTCGCATATAGC
**
25165344 ATAGGTTTTCATATCA-C
1 ATAGGTTCGCATAT-AGC
*
25165361 ATAGATTCGCATATAGC
1 ATAGGTTCGCATATAGC
25165378 ATAG
1 ATAG
25165382 TAAGGCTCGC
Statistics
Matches: 69, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
16 9 0.13
17 54 0.78
18 6 0.09
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (17 bp):
ATAGGTTCGCATATAGC
Found at i:25167455 original size:33 final size:33
Alignment explanation
Indices: 25167413--25167478 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
25167403 TACTGTTTCC
25167413 AACTAACCATTTGTCTAAGGATGGTAAGCCATA
1 AACTAACCATTTGTCTAAGGATGGTAAGCCATA
25167446 AACTAACCATTTGTCTAAGGATGGTAAGCCATA
1 AACTAACCATTTGTCTAAGGATGGTAAGCCATA
25167479 CTAAATTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (33 bp):
AACTAACCATTTGTCTAAGGATGGTAAGCCATA
Found at i:25171057 original size:43 final size:43
Alignment explanation
Indices: 25171010--25171104 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
25171000 TCCCAGATAT
* *
25171010 GGTCTTACATGTTATCACATATCGATGCCACTGTAC-CAGACAG
1 GGTCTTACATGTAATCACATATCGATGCCAATGT-CTCAGACAG
* * *
25171053 GGTCTTACATGTAATCTCATATCGATGTCAATGTCTCAGACAT
1 GGTCTTACATGTAATCACATATCGATGCCAATGTCTCAGACAG
25171096 GGTCTTACA
1 GGTCTTACA
25171105 CTAAATCACA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 1 0.02
43 45 0.98
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (43 bp):
GGTCTTACATGTAATCACATATCGATGCCAATGTCTCAGACAG
Found at i:25187713 original size:31 final size:29
Alignment explanation
Indices: 25187646--25187714 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
25187636 ATAATAACGT
* * *
25187646 AAGTGACTAAAATGTAACATTTCAAATAT
1 AAGTGACTAAAATGTAACATTACAAACAA
25187675 AAGTGACTAAAATGTAAC-TTGAGACAAACAA
1 AAGTGACTAAAATGTAACATT---ACAAACAA
25187706 AAGTGACTA
1 AAGTGACTA
25187715 TTTTAATAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.06
29 18 0.53
31 14 0.41
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.25
Consensus pattern (29 bp):
AAGTGACTAAAATGTAACATTACAAACAA
Found at i:25188406 original size:11 final size:10
Alignment explanation
Indices: 25188368--25188408 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
25188358 GGTTTTTTAC
25188368 TAAAATAATA
1 TAAAATAATA
*
25188378 TAAAAGAA-A
1 TAAAATAATA
25188387 TAAAA-AATA
1 TAAAATAATA
25188396 TTAAAATAATA
1 -TAAAATAATA
25188407 TA
1 TA
25188409 TAAAAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 2 0.07
9 7 0.26
10 14 0.52
11 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (10 bp):
TAAAATAATA
Found at i:25188509 original size:27 final size:27
Alignment explanation
Indices: 25188468--25188530 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
25188458 GGTAATGGAA
*
25188468 TGGCGACACCAGTGGTGCC-TTTCTCAT
1 TGGCGGCACCAGTGGTGCCATTTC-CAT
*
25188495 TGGCGGCACCGGTGGTGCCATTTCCAT
1 TGGCGGCACCAGTGGTGCCATTTCCAT
*
25188522 TAGCGGCAC
1 TGGCGGCAC
25188531 AGGACTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.14, C:0.30, G:0.30, T:0.25
Consensus pattern (27 bp):
TGGCGGCACCAGTGGTGCCATTTCCAT
Found at i:25189457 original size:27 final size:27
Alignment explanation
Indices: 25189419--25189481 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
25189409 TTTTAGTCCT
* *
25189419 GTGCCGCCAATGGGAATGGCACCACCG
1 GTGCCGCCAATGAGAAAGGCACCACCG
25189446 GTGCCGCCAATGAGAAAGGCACCACCG
1 GTGCCGCCAATGAGAAAGGCACCACCG
25189473 GTGCCGCCA
1 GTGCCGCCA
25189482 TTCCATTACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.24, C:0.35, G:0.32, T:0.10
Consensus pattern (27 bp):
GTGCCGCCAATGAGAAAGGCACCACCG
Found at i:25189566 original size:9 final size:10
Alignment explanation
Indices: 25189532--25189582 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 10
25189522 TTGGTAAATA
25189532 ATTTTTTTGT
1 ATTTTTTTGT
25189542 ATATTATTTTGGT
1 AT-TT-TTTT-GT
25189555 ATTTTTTT-T
1 ATTTTTTTGT
25189564 ATTTCTTTTGT
1 ATTT-TTTTGT
25189575 ATTATTTT
1 ATT-TTTT
25189583 AGTAAAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
9 5 0.14
10 6 0.17
11 13 0.37
12 7 0.20
13 4 0.11
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.75
Consensus pattern (10 bp):
ATTTTTTTGT
Found at i:25189576 original size:20 final size:23
Alignment explanation
Indices: 25189532--25189582 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 23
25189522 TTGGTAAATA
25189532 ATTTTTTTGTATATTATTTTGGT
1 ATTTTTTTGTATATTATTTTGGT
*
25189555 ATTTTTTT-TAT-TTCTTTT-GT
1 ATTTTTTTGTATATTATTTTGGT
*
25189575 ATTATTTT
1 ATTTTTTT
25189583 AGTAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 9 0.35
21 6 0.23
22 3 0.12
23 8 0.31
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.75
Consensus pattern (23 bp):
ATTTTTTTGTATATTATTTTGGT
Found at i:25189996 original size:14 final size:14
Alignment explanation
Indices: 25189979--25190009 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
25189969 CATGAACTTT
25189979 TTTAATATTTTTTA
1 TTTAATATTTTTTA
25189993 TTTAATATTTTTTA
1 TTTAATATTTTTTA
25190007 TTT
1 TTT
25190010 TTATAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTAATATTTTTTA
Found at i:25190019 original size:15 final size:15
Alignment explanation
Indices: 25189977--25190021 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
25189967 TTCATGAACT
25189977 TTTTTAATATTTTTTA
1 TTTTT-ATATTTTTTA
*
25189993 -TTTAATATTTTTTA
1 TTTTTATATTTTTTA
*
25190007 TTTTTATAATTTTTA
1 TTTTTATATTTTTTA
25190022 AATTATCTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTATATTTTTTA
Found at i:25207132 original size:9 final size:9
Alignment explanation
Indices: 25207118--25207150 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
25207108 TTTGCATTCT
25207118 CATTTTTCC
1 CATTTTTCC
25207127 CATTTTTCC
1 CATTTTTCC
*
25207136 CATTTTCCC
1 CATTTTTCC
25207145 CATTTT
1 CATTTT
25207151 CATTAGTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.33, G:0.00, T:0.55
Consensus pattern (9 bp):
CATTTTTCC
Found at i:25215440 original size:40 final size:39
Alignment explanation
Indices: 25215365--25215442 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 39
25215355 GAAAACGCTT
*
25215365 CCTCAAGGAAGCGCTTTGTCCATGTGGACATAAAGCGCGC
1 CCTCAAGGAAGCGCTTTGTCCACGTGGACA-AAAGCGCGC
* *
25215405 CCTCAAGGACGCGTTTTCTGTCCACGTGGAC-AAAGCGC
1 CCTCAAGGAAGCG-CTT-TGTCCACGTGGACAAAAGCGC
25215443 TTCCTTGAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 19 0.58
41 2 0.06
42 12 0.36
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (39 bp):
CCTCAAGGAAGCGCTTTGTCCACGTGGACAAAAGCGCGC
Found at i:25215612 original size:11 final size:11
Alignment explanation
Indices: 25215576--25215645 Score: 72
Period size: 11 Copynumber: 6.4 Consensus size: 11
25215566 TAAATCCTTT
*
25215576 CTCTC-AATTT
1 CTCTCAAATTC
25215586 CTCTCCAATATT-
1 CTCT-CAA-ATTC
25215598 CTCTCAAATTC
1 CTCTCAAATTC
25215609 CTCTCAAATTC
1 CTCTCAAATTC
* *
25215620 CTTTCAATTTC
1 CTCTCAAATTC
*
25215631 CTATCAAATTC
1 CTCTCAAATTC
25215642 CTCT
1 CTCT
25215646 TAAAAAAGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
10 7 0.14
11 36 0.71
12 5 0.10
13 3 0.06
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.43
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:25215873 original size:21 final size:20
Alignment explanation
Indices: 25215848--25215913 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 20
25215838 ATTTTTTTTA
25215848 TTTATGTAATTTTAAATAATT
1 TTTAT-TAATTTTAAATAATT
*
25215869 TTTATT--TTATTAGA-AATT
1 TTTATTAATT-TTAAATAATT
25215887 TCTTA-TAATTTTTAAATAATT
1 T-TTATTAA-TTTTAAATAATT
25215908 TTTATT
1 TTTATT
25215914 TTATTATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
18 8 0.22
19 7 0.19
20 8 0.22
21 13 0.36
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (20 bp):
TTTATTAATTTTAAATAATT
Found at i:25220259 original size:126 final size:126
Alignment explanation
Indices: 25220034--25220325 Score: 467
Period size: 126 Copynumber: 2.3 Consensus size: 126
25220024 TCAGGCCAAA
* *
25220034 CAGGAGCTACTGTAGCAAAAGAACGTCCACGTGGGAGCTTCTTTTAGTACTTTTGCTGACAAAGC
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
* *
25220099 ATCCTGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACGCCTACTCGAAATTATTTTTT
66 ATCCTGCTTAAAGCATTTTTGACACTATTGGCTCAGAAACGCCTACTCAAAATTATTTTTT
* * * *
25220160 CAGGAGCTACTGTAGCAGAAGTGTGTCCACGTGGGATCTTCTTTCAGTACTTTTGCTGACAAAGC
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
* * *
25220225 ATCCTGCTTAAAGCGTTTTTGACACTATTGGCTCAGAAACGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTAAAGCATTTTTGACACTATTGGCTCAGAAACGCCTACTCAAAATTATTTTTT
* *
25220286 CAGGAGCTATTGTAGCAAAAGAGCGTTCACGTGGGAGCTT
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
25220326 TTTTAAATTA
Statistics
Matches: 149, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 149 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (126 bp):
CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
ATCCTGCTTAAAGCATTTTTGACACTATTGGCTCAGAAACGCCTACTCAAAATTATTTTTT
Found at i:25225548 original size:47 final size:45
Alignment explanation
Indices: 25225494--25225720 Score: 247
Period size: 47 Copynumber: 4.8 Consensus size: 45
25225484 ATAAAAGTTG
* * * *
25225494 CTAAAATACATTGTGGATATACCACTAGTTGAGAAGGTGACTGCGGA
1 CTAAAATACGTTGTGGATAAACCACT-GTCGAGCAGGTGACTGC-GA
25225541 CTAAAATACGTTGTGGATAAACCACTGGTCGAGCAGGTGACTGTCGA
1 CTAAAATACGTTGTGGATAAACCACT-GTCGAGCAGGTGACTG-CGA
* * *
25225588 TTAAAATATGTTGTGGATAAACCACTGCTCGAGCAGGTGACTGCCAA
1 CTAAAATACGTTGTGGATAAACCACTG-TCGAGCAGGTGACTG-CGA
* * * **
25225635 CTAAAATACGTAGTGGATAAACCACTGGTAGAACATATGACTGTCGA
1 CTAAAATACGTTGTGGATAAACCACT-GTCGAGCAGGTGACTG-CGA
* *
25225682 CTAAGATACGTTGTGGATAAACCACTGGTCAAGCAGGTG
1 CTAAAATACGTTGTGGATAAACCACT-GTCGAGCAGGTG
25225721 TGTCACATCC
Statistics
Matches: 152, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
46 1 0.01
47 149 0.98
48 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (45 bp):
CTAAAATACGTTGTGGATAAACCACTGTCGAGCAGGTGACTGCGA
Found at i:25225656 original size:94 final size:93
Alignment explanation
Indices: 25225494--25225720 Score: 292
Period size: 94 Copynumber: 2.4 Consensus size: 93
25225484 ATAAAAGTTG
* * * * ** *
25225494 CTAAAATACATTGTGGATATACCACTAGTTGAGAAGGTGACTGCGGACTAAAATACGTTGTGGAT
1 CTAAAATACGTTGTGGATAAACCACT-GTCGAGCAGGTGACTGCCAACTAAAATACGTAGTGGAT
* * *
25225559 AAACCACTGGTCGAGCAGGTGACTGTCGA
65 AAACCACTGGTAGAACAGATGACTGTCGA
* *
25225588 TTAAAATATGTTGTGGATAAACCACTGCTCGAGCAGGTGACTGCCAACTAAAATACGTAGTGGAT
1 CTAAAATACGTTGTGGATAAACCACTG-TCGAGCAGGTGACTGCCAACTAAAATACGTAGTGGAT
*
25225653 AAACCACTGGTAGAACATATGACTGTCGA
65 AAACCACTGGTAGAACAGATGACTGTCGA
* *
25225682 CTAAGATACGTTGTGGATAAACCACTGGTCAAGCAGGTG
1 CTAAAATACGTTGTGGATAAACCACT-GTCGAGCAGGTG
25225721 TGTCACATCC
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
93 1 0.01
94 112 0.98
95 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (93 bp):
CTAAAATACGTTGTGGATAAACCACTGTCGAGCAGGTGACTGCCAACTAAAATACGTAGTGGATA
AACCACTGGTAGAACAGATGACTGTCGA
Done.