Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 96 of 189
Found at i:26740731 original size:75 final size:74
Alignment explanation
Indices: 26740571--26740735 Score: 177
Period size: 75 Copynumber: 2.2 Consensus size: 74
26740561 AGTTATCCTT
* *** * **
26740571 AAAGCCGTTGTGGCGAATTATCTAAAAAGCCTTTGTGGTGAGTTATCTGTAAGCCCTTGTGGAAA
1 AAAGCCTTTGTGGCGAATTATCTAAAAAGCCTTTGTGACAAGTTATCTATAAGCCCTTACGGAAA
26740636 ATTATCAGA
66 ATTATCAGA
* * * * * *
26740645 AAATCCTTTTGTGGTGAGTTATCTATAAAGCCTTTGTGACAAGTTATCTATAAAGCCTTTACGGT
1 AAAGCC-TTTGTGGCGAATTATCTAAAAAGCCTTTGTGACAAGTTATCTAT-AAGCCCTTACGGA
* *
26740710 GAATTATCTGA
64 AAATTATCAGA
26740721 AAAGCCTTTGTGGCG
1 AAAGCCTTTGTGGCG
26740736 TGTTGCACGA
Statistics
Matches: 72, Mismatches: 17, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
74 5 0.07
75 44 0.61
76 23 0.32
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.34
Consensus pattern (74 bp):
AAAGCCTTTGTGGCGAATTATCTAAAAAGCCTTTGTGACAAGTTATCTATAAGCCCTTACGGAAA
ATTATCAGA
Found at i:26752144 original size:23 final size:22
Alignment explanation
Indices: 26752092--26752144 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
26752082 TCCACGTCTT
*
26752092 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
26752114 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
26752137 TTTCTTTT
1 TTTCTTTT
26752145 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:26754505 original size:12 final size:12
Alignment explanation
Indices: 26754483--26754514 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
26754473 CATAAAAATT
26754483 TAAACTAAGTAAA
1 TAAA-TAAGTAAA
26754496 TAAATAAGTAAA
1 TAAATAAGTAAA
26754508 TAAATAA
1 TAAATAA
26754515 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.25
Consensus pattern (12 bp):
TAAATAAGTAAA
Found at i:26760410 original size:40 final size:39
Alignment explanation
Indices: 26760350--26760492 Score: 162
Period size: 40 Copynumber: 3.6 Consensus size: 39
26760340 TGTTTGAATA
* * *
26760350 CACACACGTGTCCTTGATTGTACTTTGGTACCCCTAATTG
1 CACATACGTGCCCCTGATTGTACTTTGGTACCCCTAA-TG
* * * *
26760390 CACATACGTGTCCCTGATTGTACTTCGATACCCTTGAATG
1 CACATACGTGCCCCTGATTGTACTTTGGTACCCCT-AATG
26760430 CACATACGTGCCCCT-ATTTGTACTTTGGTACCCCTAAATG
1 CACATACGTGCCCCTGA-TTGTACTTTGGTACCCCT-AATG
* *
26760470 CATATACGTGCCCCTGTTTGTAC
1 CACATACGTGCCCCTGATTGTAC
26760493 CTCAGTAACT
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 85 0.97
41 2 0.02
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.34
Consensus pattern (39 bp):
CACATACGTGCCCCTGATTGTACTTTGGTACCCCTAATG
Found at i:26765692 original size:15 final size:15
Alignment explanation
Indices: 26765639--26765692 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
26765629 GGAAGAGGTA
26765639 GAGAATTTGTTCGTT
1 GAGAATTTGTTCGTT
* *
26765654 GAGAGTTCGTT-G-T
1 GAGAATTTGTTCGTT
*
26765667 GAAGAACTTGTTCGTT
1 G-AGAATTTGTTCGTT
26765683 GAGAATTTGT
1 GAGAATTTGT
26765693 GTCAAGGTGG
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
13 2 0.07
14 8 0.27
15 18 0.60
16 2 0.07
ACGTcount: A:0.22, C:0.07, G:0.30, T:0.41
Consensus pattern (15 bp):
GAGAATTTGTTCGTT
Found at i:26766453 original size:119 final size:119
Alignment explanation
Indices: 26766241--26766475 Score: 310
Period size: 119 Copynumber: 2.0 Consensus size: 119
26766231 AGAAAATTTA
* * * * * *
26766241 TTTAAGCTCAACTCCTATCTCTTAAGTTGTAGCCTCACCTTTGTACGATCTAGTATTGGTTTTAA
1 TTTAAACTCAACTCCTATCTCTCAAGTTGCAACCTCACCTTTGTACAATCTAGTATTGGTTCTAA
* ** * *
26766306 CTCACTGCTCTTGTAATCACTTAGAAAGTGTCTACAATAACCATCTAAGAATGG
66 CACACTGCTCTTCCAATCACTTAAAAAGTGTCTACAACAACCATCTAAGAATGG
* *
26766360 TTTAAACTCAACTCCTATCTCTCAAGTTGCAATCTCACCTTTGTACAATCTATTATTGGTTCTAA
1 TTTAAACTCAACTCCTATCTCTCAAGTTGCAACCTCACCTTTGTACAATCTAGTATTGGTTCTAA
* * *
26766425 CAC-CTTGTTCTTCCAATCACTTAAAAAGTGTTTACAACAACTATCTAAGAA
66 CACAC-TGCTCTTCCAATCACTTAAAAAGTGTCTACAACAACCATCTAAGAA
26766476 AAAGATATCT
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
118 1 0.01
119 98 0.99
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (119 bp):
TTTAAACTCAACTCCTATCTCTCAAGTTGCAACCTCACCTTTGTACAATCTAGTATTGGTTCTAA
CACACTGCTCTTCCAATCACTTAAAAAGTGTCTACAACAACCATCTAAGAATGG
Found at i:26772799 original size:17 final size:17
Alignment explanation
Indices: 26772774--26772810 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
26772764 GTGCTCAATG
*
26772774 GTAGGACTTGATTAAGT
1 GTAGCACTTGATTAAGT
26772791 GTAGCACTTGATTAAGT
1 GTAGCACTTGATTAAGT
26772808 GTA
1 GTA
26772811 AGGACTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (17 bp):
GTAGCACTTGATTAAGT
Found at i:26776427 original size:16 final size:15
Alignment explanation
Indices: 26776408--26776446 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
26776398 AAGTATAATA
26776408 TTATTGAAATTTTAGT
1 TTATTGAAATTTT-GT
26776424 TTATT-AAATTTTGT
1 TTATTGAAATTTTGT
*
26776438 TAATTGAAA
1 TTATTGAAA
26776447 GAATAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 6 0.29
15 10 0.48
16 5 0.24
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (15 bp):
TTATTGAAATTTTGT
Found at i:26779426 original size:23 final size:25
Alignment explanation
Indices: 26779383--26779431 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
26779373 TTCCTTTTTC
26779383 CTTCTTTAATTTTCTTATTA-TGTTT
1 CTTCTTT-ATTTTCTTATTATTGTTT
*
26779408 CTTCTTT-TTTTCTTTTTATTGTTT
1 CTTCTTTATTTTCTTATTATTGTTT
26779432 TCGGCAAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 10 0.45
24 5 0.23
25 7 0.32
ACGTcount: A:0.10, C:0.12, G:0.04, T:0.73
Consensus pattern (25 bp):
CTTCTTTATTTTCTTATTATTGTTT
Found at i:26779433 original size:25 final size:25
Alignment explanation
Indices: 26779378--26779433 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
26779368 TCTTTTTCCT
26779378 TTTTCCTTCTTTAATTTTCTTATTATG
1 TTTT-CTTCTTT-ATTTTCTTATTATG
*
26779405 -TTTCTTCTTT-TTTTCTTTTTATTG
1 TTTTCTTCTTTATTTTCTTATTA-TG
26779429 TTTTC
1 TTTTC
26779434 GGCAAGTGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 10 0.38
24 2 0.08
25 11 0.42
26 3 0.12
ACGTcount: A:0.09, C:0.14, G:0.04, T:0.73
Consensus pattern (25 bp):
TTTTCTTCTTTATTTTCTTATTATG
Found at i:26780221 original size:64 final size:64
Alignment explanation
Indices: 26780050--26780263 Score: 207
Period size: 64 Copynumber: 3.4 Consensus size: 64
26780040 GGGCATGGGG
* ** ** ** * * *
26780050 CACGAGCGTGTGTCCAGGCCGTGTAACTCACTGAT-TACAAGGTAAGGATCACATGGGCTAGAGA
1 CACGGGCGTGTGTCCAGGCCGTGTAACTCACT-ATCTGTAATTTAAAAACCACACGGGCCAGAGA
* * * * * *
26780114 CACGAGCGTGTGTCCAGGCCATGTGACTCACTATCTGTAATTTAGAAACTATACGGGCCAGAGA
1 CACGGGCGTGTGTCCAGGCCGTGTAACTCACTATCTGTAATTTAAAAACCACACGGGCCAGAGA
* * * * *
26780178 CACGGGCGTGTGTCCAGGCCGTGTAACTCGCTGTTTGTGATTTAAAAACCACACGGGCCAGTGA
1 CACGGGCGTGTGTCCAGGCCGTGTAACTCACTATCTGTAATTTAAAAACCACACGGGCCAGAGA
*
26780242 CACGGGTGTGTGT-CAGGCCGTG
1 CACGGGCGTGTGTCCAGGCCGTG
26780264 CGAGGGACAA
Statistics
Matches: 123, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
63 11 0.09
64 112 0.91
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.22
Consensus pattern (64 bp):
CACGGGCGTGTGTCCAGGCCGTGTAACTCACTATCTGTAATTTAAAAACCACACGGGCCAGAGA
Found at i:26787047 original size:17 final size:17
Alignment explanation
Indices: 26787005--26787047 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
26786995 ATCTCAAGAA
*
26787005 AATAGAAGCTATAATTG
1 AATAGAAGTTATAATTG
*
26787022 AATAGAAGTTATAGTTG
1 AATAGAAGTTATAATTG
*
26787039 AATGGAAGT
1 AATAGAAGT
26787048 AACCGGCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.44, C:0.02, G:0.23, T:0.30
Consensus pattern (17 bp):
AATAGAAGTTATAATTG
Found at i:26788899 original size:19 final size:17
Alignment explanation
Indices: 26788877--26788922 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
26788867 CATTTTCCTT
26788877 TTTTTCTTTTCTTTTTAA
1 TTTTTCTTTTC-TTTTAA
26788895 GTTTTT-TCTTTCTTTTAA
1 -TTTTTCT-TTTCTTTTAA
26788913 TTTTTCTTTT
1 TTTTTCTTTT
26788923 TGATTGTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 8 0.32
18 8 0.32
19 9 0.36
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTTCTTTTCTTTTAA
Found at i:26789623 original size:63 final size:64
Alignment explanation
Indices: 26789548--26789673 Score: 164
Period size: 63 Copynumber: 2.0 Consensus size: 64
26789538 GATCACATAG
* *
26789548 GCCAGAGACACAGGCGTGAGTCTAAGCCGTATGACTCACT-TGTGTAATTTAGAAACCACACGA
1 GCCAGAGACACAGGCGTGAGTCTAAGCCATATAACTCACTGTGTGTAATTTAGAAACCACACGA
* * * * * * *
26789611 GCCAGGGACACAGGCGTGTGTCTAGGTCATGTAACTCACTGTTTGTGATTTAGAAACCACACG
1 GCCAGAGACACAGGCGTGAGTCTAAGCCATATAACTCACTGTGTGTAATTTAGAAACCACACG
26789674 GGCGTGTGTC
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
63 33 0.62
64 20 0.38
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (64 bp):
GCCAGAGACACAGGCGTGAGTCTAAGCCATATAACTCACTGTGTGTAATTTAGAAACCACACGA
Found at i:26793576 original size:190 final size:189
Alignment explanation
Indices: 26793253--26793634 Score: 665
Period size: 190 Copynumber: 2.0 Consensus size: 189
26793243 TAGACTAAAG
* * *
26793253 ATTTGTCTGACTGAGTGTATCACTTTGAAATGCTCTAGTGTTGTTAGTGAAAAGAAAGAAAGAAC
1 ATTTGTCTAACCGAGTGCATCACTTTGAAATGCTCTAGTGTTGTTAGTGAAAAGAAAGAAAGAAC
* *
26793318 TTTGAGATTGTGTATTGACTACAGAAAGTTGATAATAGTCACAATGAAGAATAATATTTGATACC
66 TTTAAGATTGTGTATTGACTACAGAAAGTTGATAATAGTCACAATGAAGAATAAAATTTGATACC
*
26793383 TCGTATTGATGACTTGTTTGATTAGTTGTGAGAAGCTACTGTGTTTTTAAAAGATTGACA
131 TCGTATTGATGACTTGTTTGATCAGTTGTGAGAAGCTACTGTGTTTTT-AAAGATTGACA
* * *
26793443 ATTTGTCTAACCGAGTGCATCACTTTGAAATGCTTTAGTGTTTTTAGTGAAAAGAAATAAAGAAC
1 ATTTGTCTAACCGAGTGCATCACTTTGAAATGCTCTAGTGTTGTTAGTGAAAAGAAAGAAAGAAC
*
26793508 TTTAAGATTGTGTATTGACTACAGAAAGTTGATAATAGTCACCATGAAGAATAAAATTTGATACC
66 TTTAAGATTGTGTATTGACTACAGAAAGTTGATAATAGTCACAATGAAGAATAAAATTTGATACC
26793573 TCGTATTGATGACTTGTTTGATCAGTTGTGAGAAGCTACTGTGTTTTTAAAGATTGACA
131 TCGTATTGATGACTTGTTTGATCAGTTGTGAGAAGCTACTGTGTTTTTAAAGATTGACA
26793632 ATT
1 ATT
26793635 CGATTATTAT
Statistics
Matches: 182, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
189 14 0.08
190 168 0.92
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (189 bp):
ATTTGTCTAACCGAGTGCATCACTTTGAAATGCTCTAGTGTTGTTAGTGAAAAGAAAGAAAGAAC
TTTAAGATTGTGTATTGACTACAGAAAGTTGATAATAGTCACAATGAAGAATAAAATTTGATACC
TCGTATTGATGACTTGTTTGATCAGTTGTGAGAAGCTACTGTGTTTTTAAAGATTGACA
Found at i:26794970 original size:10 final size:10
Alignment explanation
Indices: 26794928--26794977 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
26794918 ACAATTAAGG
26794928 TAATTAATTA
1 TAATTAATTA
*
26794938 TAGTTAATTA
1 TAATTAATTA
*
26794948 T-GTTAATTTA
1 TAATTAA-TTA
26794958 TAATTAATTA
1 TAATTAATTA
26794968 TAATTTAATT
1 TAA-TTAATT
26794978 TATGTATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 5 0.14
10 20 0.57
11 10 0.29
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (10 bp):
TAATTAATTA
Found at i:26799316 original size:10 final size:9
Alignment explanation
Indices: 26799312--26799345 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
26799302 GTTTATTTAA
26799312 TTTTAATTT
1 TTTTAATTT
26799321 TATTTAATTT
1 T-TTTAATTT
*
26799331 TTTCAATTT
1 TTTTAATTT
26799340 TTTTAA
1 TTTTAA
26799346 AAAATTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTAATTT
Found at i:26799322 original size:16 final size:17
Alignment explanation
Indices: 26799293--26799331 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
26799283 TTTTTTTTTG
*
26799293 AATTTTTATGTTTATTT
1 AATTTTAATGTTTATTT
26799310 AATTTTAAT-TTTATTT
1 AATTTTAATGTTTATTT
26799326 AATTTT
1 AATTTT
26799332 TTCAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
AATTTTAATGTTTATTT
Found at i:26810755 original size:6 final size:6
Alignment explanation
Indices: 26810744--26810784 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
26810734 ATATAGGATC
*
26810744 TTGTTT TTGTTT TTGTTT TT-TTG TT-TTT TTGTTT TT-TTT TT
1 TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT TT
26810785 TATGTCTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
5 13 0.41
6 19 0.59
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (6 bp):
TTGTTT
Found at i:26810766 original size:8 final size:8
Alignment explanation
Indices: 26810753--26810785 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
26810743 CTTGTTTTTG
26810753 TTTTTGTT
1 TTTTTGTT
26810761 TTTTTGTT
1 TTTTTGTT
26810769 TTTTTGTT
1 TTTTTGTT
26810777 TTTTT-TT
1 TTTTTGTT
26810784 TT
1 TT
26810786 ATGTCTAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 4 0.16
8 21 0.84
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (8 bp):
TTTTTGTT
Found at i:26810774 original size:16 final size:15
Alignment explanation
Indices: 26810747--26810785 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
26810737 TAGGATCTTG
*
26810747 TTTTTGTTTTTGTTT
1 TTTTTTTTTTTGTTT
26810762 TTTTGTTTTTTTGTTT
1 TTTT-TTTTTTTGTTT
26810778 TTTTTTTT
1 TTTTTTTT
26810786 ATGTCTAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTTTGTTT
Found at i:26818849 original size:21 final size:21
Alignment explanation
Indices: 26818823--26818891 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
26818813 CCATGGTGTC
26818823 TTTCAGCCATGGTCATACTCA
1 TTTCAGCCATGGTCATACTCA
* *
26818844 TTTCAGTCATGATGTTATAACATC-
1 TTTCAGCCATG--GTCAT-AC-TCA
* *
26818868 TTTCAGCTATGGTCTTACTCA
1 TTTCAGCCATGGTCATACTCA
26818889 TTT
1 TTT
26818892 TACTCATTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
20 2 0.05
21 15 0.41
22 3 0.08
23 4 0.11
24 11 0.30
25 2 0.05
ACGTcount: A:0.23, C:0.22, G:0.13, T:0.42
Consensus pattern (21 bp):
TTTCAGCCATGGTCATACTCA
Found at i:26822012 original size:30 final size:30
Alignment explanation
Indices: 26821951--26822012 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
26821941 GGAGGGGAGG
* * **
26821951 GGAGTAAAAGTTTTGGGGGGAAAGTGGAAA
1 GGAGTAAAAGTTTTGAGGGAAAAGTAAAAA
26821981 GGAGTAAAAGTTTTGAGGGAAAAGTAAAAA
1 GGAGTAAAAGTTTTGAGGGAAAAGTAAAAA
26822011 GG
1 GG
26822013 TTTGGGAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.39, T:0.19
Consensus pattern (30 bp):
GGAGTAAAAGTTTTGAGGGAAAAGTAAAAA
Found at i:26822071 original size:9 final size:9
Alignment explanation
Indices: 26822057--26822090 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
26822047 AGTTTGATAC
26822057 TCGAATTAT
1 TCGAATTAT
26822066 TCGAATTAT
1 TCGAATTAT
*
26822075 TCGAGTTAT
1 TCGAATTAT
*
26822084 TTGAATT
1 TCGAATT
26822091 CGAAAACTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (9 bp):
TCGAATTAT
Found at i:26827540 original size:14 final size:14
Alignment explanation
Indices: 26827523--26827549 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26827513 TCAACTTGAA
26827523 ATATATATTCATTC
1 ATATATATTCATTC
26827537 ATATATATTCATT
1 ATATATATTCATT
26827550 TCGAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (14 bp):
ATATATATTCATTC
Found at i:26827690 original size:28 final size:27
Alignment explanation
Indices: 26827638--26827746 Score: 112
Period size: 28 Copynumber: 3.9 Consensus size: 27
26827628 CGAGACTGAT
* * * *
26827638 TTTCTCACACAAGCTGTAATTTTTGAA
1 TTTCTCACACTAGTTGTGATATTTGAA
*
26827665 TTTGCTTACACTAGTTGTGATATTTGAA
1 TTT-CTCACACTAGTTGTGATATTTGAA
*
26827693 TTTTCTCACA-TGAGCTGTGATATTTGAA
1 -TTTCTCACACT-AGTTGTGATATTTGAA
*
26827721 CTTTCTCACACAAGTTGTGATATTTG
1 -TTTCTCACACTAGTTGTGATATTTG
26827747 GGCTGCTCAC
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
27 4 0.06
28 61 0.90
29 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.43
Consensus pattern (27 bp):
TTTCTCACACTAGTTGTGATATTTGAA
Found at i:26827737 original size:56 final size:56
Alignment explanation
Indices: 26827636--26827746 Score: 152
Period size: 56 Copynumber: 2.0 Consensus size: 56
26827626 CACGAGACTG
* * *
26827636 ATTTTCTCACACAAGCTGTAATTTTTGAATTTGCTTACACTAGTTGTGATATTTGA
1 ATTTTCTCACACAAGCTGTAATATTTGAATTTGCTCACACAAGTTGTGATATTTGA
** *
26827692 ATTTTCTCACATGAGCTGTGATATTTGAACTTT-CTCACACAAGTTGTGATATTTG
1 ATTTTCTCACACAAGCTGTAATATTTGAA-TTTGCTCACACAAGTTGTGATATTTG
26827747 GGCTGCTCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
56 45 0.94
57 3 0.06
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (56 bp):
ATTTTCTCACACAAGCTGTAATATTTGAATTTGCTCACACAAGTTGTGATATTTGA
Found at i:26840096 original size:81 final size:80
Alignment explanation
Indices: 26839970--26840235 Score: 284
Period size: 81 Copynumber: 3.3 Consensus size: 80
26839960 TTACCATCGG
* * * * * *
26839970 GGGTATTTCGATAATTTTACCCTTCAGGGGCATTTAGGTAGTTTTAACTTTCGAGGGTATTTCGA
1 GGGTATTTTGATAATTTTACCCTTCGGGGGTATTTAGGTAATTTTACCTTTCGAGGGTATTTCGG
*
26840035 TAATTTTACCCTTCAA
66 TAATTTTACCCTT-GA
* * * *
26840051 GGGTATTTTGATAATTTTACCGTTCGGGGGTATTTCGGTACTTTTACCTTTC-AGGGGTATTTTG
1 GGGTATTTTGATAATTTTACCCTTCGGGGGTATTTAGGTAATTTTACCTTTCGA-GGGTATTTCG
26840115 GTAATTTTACCCTTTGA
65 GTAATTTTACCC-TTGA
* * * * * *
26840132 GGGTATTTT-AGTAATTTTACCCTTCGAGGGTATTTTGATAAATTTACCCTTCGGGGGTATTTCG
1 GGGTATTTTGA-TAATTTTACCCTTCGGGGGTATTTAGGTAATTTTACCTTTCGAGGGTATTTCG
* * *
26840196 GTCATTCTACCCTATGG
65 GTAATTTTACCCT-TGA
*
26840213 GGGTATTTTGATCATTTTACCCT
1 GGGTATTTTGATAATTTTACCCT
26840236 ATAAAATTAT
Statistics
Matches: 156, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
80 3 0.02
81 150 0.96
82 3 0.02
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (80 bp):
GGGTATTTTGATAATTTTACCCTTCGGGGGTATTTAGGTAATTTTACCTTTCGAGGGTATTTCGG
TAATTTTACCCTTGA
Found at i:26840237 original size:27 final size:27
Alignment explanation
Indices: 26839966--26840235 Score: 256
Period size: 27 Copynumber: 10.0 Consensus size: 27
26839956 CACTTTACCA
*
26839966 TCGGGGGTATTTCGATAATTTTACCCT
1 TCGGGGGTATTTTGATAATTTTACCCT
* * * * * * *
26839993 TCAGGGGCATTTAGGTAGTTTTAACTT
1 TCGGGGGTATTTTGATAATTTTACCCT
* *
26840020 TCGAGGGTATTTCGATAATTTTACCCT
1 TCGGGGGTATTTTGATAATTTTACCCT
** *
26840047 TCAAGGGTATTTTGATAATTTTACCGT
1 TCGGGGGTATTTTGATAATTTTACCCT
* * * *
26840074 TCGGGGGTATTTCGGTACTTTTACCTT
1 TCGGGGGTATTTTGATAATTTTACCCT
* *
26840101 TCAGGGGTATTTTGGTAATTTTACCCT
1 TCGGGGGTATTTTGATAATTTTACCCT
* *
26840128 TTGAGGGTATTTT-AGTAATTTTACCCT
1 TCGGGGGTATTTTGA-TAATTTTACCCT
* *
26840155 TCGAGGGTATTTTGATAAATTTACCCT
1 TCGGGGGTATTTTGATAATTTTACCCT
* * * *
26840182 TCGGGGGTATTTCGGTCATTCTACCCT
1 TCGGGGGTATTTTGATAATTTTACCCT
*
26840209 AT-GGGGGTATTTTGATCATTTTACCCT
1 -TCGGGGGTATTTTGATAATTTTACCCT
26840236 ATAAAATTAT
Statistics
Matches: 197, Mismatches: 43, Indels: 6
0.80 0.17 0.02
Matches are distributed among these distances:
27 195 0.99
28 2 0.01
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.43
Consensus pattern (27 bp):
TCGGGGGTATTTTGATAATTTTACCCT
Found at i:26843114 original size:18 final size:18
Alignment explanation
Indices: 26843091--26843138 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
26843081 TAAGTGCATT
26843091 TTAATTATTTTTTAAAAA
1 TTAATTATTTTTTAAAAA
*
26843109 TTAATTATTTTGTAAAAA
1 TTAATTATTTTTTAAAAA
*
26843127 TTTATTATTTTT
1 TTAATTATTTTT
26843139 CGACAAGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TTAATTATTTTTTAAAAA
Found at i:26843729 original size:17 final size:17
Alignment explanation
Indices: 26843709--26843762 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
26843699 GGTTAATGTA
26843709 TATGTATGAGGTTATAC
1 TATGTATGAGGTTATAC
* *
26843726 TATGTTTGA--TATGTA-
1 TATGTATGAGGT-TATAC
26843741 TATGTATGAGGTTATAC
1 TATGTATGAGGTTATAC
*
26843758 AATGT
1 TATGT
26843763 TAGAGTATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
15 9 0.32
16 6 0.21
17 13 0.46
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.44
Consensus pattern (17 bp):
TATGTATGAGGTTATAC
Found at i:26843745 original size:32 final size:33
Alignment explanation
Indices: 26843704--26843772 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
26843694 AGTATGGTTA
* *
26843704 ATGTATATGTATGAGGTTATACTATGTTTGA-T
1 ATGTATATGTATGAGGTTATACAATGTTAGAGT
26843736 ATGTATATGTATGAGGTTATACAATGTTAGAGT
1 ATGTATATGTATGAGGTTATACAATGTTAGAGT
26843769 ATGT
1 ATGT
26843773 TCAATTGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 29 0.85
33 5 0.15
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.43
Consensus pattern (33 bp):
ATGTATATGTATGAGGTTATACAATGTTAGAGT
Found at i:26845054 original size:30 final size:30
Alignment explanation
Indices: 26845018--26845077 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
26845008 CACAATATCG
26845018 TTTAATTTAATCAACATTATACAGAATTCA
1 TTTAATTTAATCAACATTATACAGAATTCA
26845048 TTTAATTTAATCAACATTATACAGAATTCA
1 TTTAATTTAATCAACATTATACAGAATTCA
26845078 GTTCATACGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.13, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTAATTTAATCAACATTATACAGAATTCA
Found at i:26859801 original size:27 final size:27
Alignment explanation
Indices: 26859740--26859801 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
26859730 AGTGTTCCAA
* *
26859740 CGGACTATCCCGTGTTTATTATCTCAT
1 CGGACTATCCCGTGCTTATTATCCCAT
* *
26859767 CAGG-CTATCCCGTGCTTATTGTCCCGT
1 C-GGACTATCCCGTGCTTATTATCCCAT
26859794 CGGACTAT
1 CGGACTAT
26859802 TTATGATGTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.07
27 25 0.86
28 2 0.07
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.35
Consensus pattern (27 bp):
CGGACTATCCCGTGCTTATTATCCCAT
Found at i:26864018 original size:25 final size:26
Alignment explanation
Indices: 26863981--26864038 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
26863971 TTAATTAGTA
* *
26863981 TAAAATATT-AATAATTCAAT-AAAT
1 TAAAATTTTAAATAATTAAATAAAAT
*
26864005 TGAAATTTTAAATAATTAAATAAAAT
1 TAAAATTTTAAATAATTAAATAAAAT
26864031 TAAAATTT
1 TAAAATTT
26864039 AGTAGAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 7 0.25
25 10 0.36
26 11 0.39
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (26 bp):
TAAAATTTTAAATAATTAAATAAAAT
Found at i:26864039 original size:25 final size:24
Alignment explanation
Indices: 26863981--26864039 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
26863971 TTAATTAGTA
*
26863981 TAAAATATT-AATAATTCAATAAAT
1 TAAAAT-TTAAATAATTAAATAAAT
*
26864005 TGAAATTTTAAATAATTAAATAAAAT
1 T-AAAATTTAAATAATTAAAT-AAAT
26864031 TAAAATTTA
1 TAAAATTTA
26864040 GTAGAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 3 0.10
25 21 0.72
26 5 0.17
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (24 bp):
TAAAATTTAAATAATTAAATAAAT
Found at i:26864788 original size:30 final size:30
Alignment explanation
Indices: 26864733--26864789 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26864723 CTTTTGAAAA
* *
26864733 TATTTACAAAAAGAGACATCTAATTTTTAG
1 TATTTACAAAAAGAGACACCAAATTTTTAG
26864763 TATTTACAAAAAGAGTA-ACCAAATTTT
1 TATTTACAAAAAGAG-ACACCAAATTTT
26864790 GAAAATAGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.35
Consensus pattern (30 bp):
TATTTACAAAAAGAGACACCAAATTTTTAG
Found at i:26872417 original size:10 final size:10
Alignment explanation
Indices: 26872399--26872446 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
26872389 CAAATCTGTC
*
26872399 AAAAATAATT
1 AAAATTAATT
*
26872409 AAAATTAATC
1 AAAATTAATT
*
26872419 AAAATTTGATAT
1 AAAA-TTAAT-T
26872431 AAAATTAATT
1 AAAATTAATT
26872441 AAAATT
1 AAAATT
26872447 GAACATGTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 19 0.61
11 8 0.26
12 4 0.13
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:26873615 original size:50 final size:50
Alignment explanation
Indices: 26873540--26873701 Score: 225
Period size: 50 Copynumber: 3.2 Consensus size: 50
26873530 GAGAATTCTT
* * *
26873540 TGGAAAGTTTTTGTGGCTAATCTTGTGAAAAGCCTTTATAGCGTATTATC
1 TGGAAAGCTTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCGTATTATC
*
26873590 TGGAAAGCTTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCCTATTATC
1 TGGAAAGCTTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCGTATTATC
** * * * *
26873640 TAAAAAGCCTTTGTGTCTAATCTTGTAAAAAGCCTTTGTGGAGTATTATC
1 TGGAAAGCTTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCGTATTATC
26873690 TGGAAAGACTTT
1 TGGAAAG-CTTT
26873702 GTGCCGAATT
Statistics
Matches: 97, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 94 0.97
51 3 0.03
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38
Consensus pattern (50 bp):
TGGAAAGCTTTTGTGGCTAATCTTGTGAAAAGCCTTTGTGGCGTATTATC
Found at i:26873621 original size:25 final size:25
Alignment explanation
Indices: 26873549--26873680 Score: 121
Period size: 25 Copynumber: 5.3 Consensus size: 25
26873539 TTGGAAAGTT
26873549 TTTGTGGCTAATCTTGTGAAAAGCC
1 TTTGTGGCTAATCTTGTGAAAAGCC
* * *
26873574 TTTATAGCGTATTATC-TG-G-AAAGCT
1 TTTGTGGC-TA--ATCTTGTGAAAAGCC
26873599 TTTGTGGCTAATCTTGTGAAAAGCC
1 TTTGTGGCTAATCTTGTGAAAAGCC
* *
26873624 TTTGTGGCCT-AT-TATCTAAAAAGCC
1 TTTGTGG-CTAATCT-TGTGAAAAGCC
* *
26873649 TTTGTGTCTAATCTTGTAAAAAGCC
1 TTTGTGGCTAATCTTGTGAAAAGCC
26873674 TTTGTGG
1 TTTGTGG
26873681 AGTATTATCT
Statistics
Matches: 86, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
22 3 0.03
23 2 0.02
24 6 0.07
25 64 0.74
26 6 0.07
27 2 0.02
28 3 0.03
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (25 bp):
TTTGTGGCTAATCTTGTGAAAAGCC
Found at i:26875537 original size:16 final size:17
Alignment explanation
Indices: 26875516--26875561 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
26875506 TTTTTATGTA
26875516 TTTTTATATTT-TATAT
1 TTTTTATATTTATATAT
*
26875532 TTTTTATAATTTATGTAT
1 TTTTTAT-ATTTATATAT
26875550 TTTTTA-ATTTAT
1 TTTTTATATTTAT
26875562 TATCTATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 13 0.48
17 4 0.15
18 10 0.37
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTTTATATTTATATAT
Found at i:26876698 original size:5 final size:5
Alignment explanation
Indices: 26876683--26876718 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
26876673 TGCAATTTAA
26876683 ATTTCC ATTTC ATTTC ATTTC ATTTC ATTTC ATTTC
1 ATTT-C ATTTC ATTTC ATTTC ATTTC ATTTC ATTTC
26876719 CACAACCCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTTC
Found at i:26878096 original size:5 final size:5
Alignment explanation
Indices: 26878086--26878111 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26878076 TATGCATCTC
26878086 CAAAA CAAAA CAAAA CAAAA CAAAA C
1 CAAAA CAAAA CAAAA CAAAA CAAAA C
26878112 CCCATATGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAA
Found at i:26882669 original size:30 final size:30
Alignment explanation
Indices: 26882633--26882691 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26882623 TACGAGGACA
26882633 TTTAGGAACTT-GAGAAGAC-CTGATATCTCG
1 TTTAGGAACTTAG-GAAGACTC-GATATCTCG
*
26882663 TTTAGGAGCTTAGGAAGACTCGATATCTC
1 TTTAGGAACTTAGGAAGACTCGATATCTC
26882692 ATTCAAGATC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (30 bp):
TTTAGGAACTTAGGAAGACTCGATATCTCG
Found at i:26883823 original size:14 final size:16
Alignment explanation
Indices: 26883795--26883828 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
26883785 TATATTATAT
26883795 AATAATAAAACAAAGA
1 AATAATAAAACAAAGA
26883811 AATAA-AAAA-AAAGA
1 AATAATAAAACAAAGA
26883825 AATA
1 AATA
26883829 GAGACAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.50
15 4 0.22
16 5 0.28
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.12
Consensus pattern (16 bp):
AATAATAAAACAAAGA
Found at i:26888696 original size:71 final size:72
Alignment explanation
Indices: 26888611--26888767 Score: 199
Period size: 71 Copynumber: 2.2 Consensus size: 72
26888601 CTTCAGACCT
* * * * *
26888611 AAAGGGAGAACATTCAGCCATCAATGTTGCGATAACAACCACTCAATGTCGCGACAAC-AAATTT
1 AAAGGGAG--CATTCAGCCATCAATGTCGCAACAACAACCACTCAATGTCACAACAACAAAATTT
26888675 CAAACCTAG
64 CAAACCTAG
* **
26888684 AAAGGGAGCATTCAGCCTTCAATGTCGCAACAACAACCACTCAATGTCACAACAACAAAATTTGT
1 AAAGGGAGCATTCAGCCATCAATGTCGCAACAACAACCACTCAATGTCACAACAACAAAATTTCA
*
26888749 AACCTAT
66 AACCTAG
*
26888756 AAAAGGAGCATT
1 AAAGGGAGCATT
26888768 TAGTCATCGA
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
71 42 0.58
72 23 0.32
73 8 0.11
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (72 bp):
AAAGGGAGCATTCAGCCATCAATGTCGCAACAACAACCACTCAATGTCACAACAACAAAATTTCA
AACCTAG
Found at i:26892597 original size:20 final size:20
Alignment explanation
Indices: 26892569--26892635 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 20
26892559 ACATGCCACT
*
26892569 ATCGTACTTTGGTACCCCTG
1 ATCGCACTTTGGTACCCCTG
** *
26892589 ATCGCACTTACGTGCCCCTG
1 ATCGCACTTTGGTACCCCTG
**
26892609 -TCATACTTTGGTA-CCCTG
1 ATCGCACTTTGGTACCCCTG
26892627 ATCGCACTT
1 ATCGCACTT
26892636 ACGTGCCTTT
Statistics
Matches: 35, Mismatches: 11, Indels: 3
0.71 0.22 0.06
Matches are distributed among these distances:
18 5 0.14
19 14 0.40
20 16 0.46
ACGTcount: A:0.16, C:0.33, G:0.18, T:0.33
Consensus pattern (20 bp):
ATCGCACTTTGGTACCCCTG
Found at i:26892616 original size:39 final size:39
Alignment explanation
Indices: 26892545--26892720 Score: 169
Period size: 39 Copynumber: 4.6 Consensus size: 39
26892535 ATAATTATAT
* * * *
26892545 CCCC-GATCGCACTTACATGCCACTATCGTACTTTGGTA
1 CCCCTGATCGCACTTACGTGCCCCTGTCATACTTTGGTA
26892583 CCCCTGATCGCACTTACGTGCCCCTGTCATACTTTGGTA
1 CCCCTGATCGCACTTACGTGCCCCTGTCATACTTTGGTA
** *
26892622 -CCCTGATCGCACTTACGTGCCTTTGTCATACTTCGGTA
1 CCCCTGATCGCACTTACGTGCCCCTGTCATACTTTGGTA
* * * * * *
26892660 CCTCTAATTGCACTTATGTGCCCTTG-CTGTACTTTGGTA
1 CCCCTGATCGCACTTACGTGCCCCTGTC-ATACTTTGGTA
* * * *
26892699 CTCTTGATAGCACTTTCGTGCC
1 CCCCTGATCGCACTTACGTGCC
26892721 GTGGTAATGT
Statistics
Matches: 114, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
38 40 0.35
39 74 0.65
ACGTcount: A:0.16, C:0.32, G:0.18, T:0.34
Consensus pattern (39 bp):
CCCCTGATCGCACTTACGTGCCCCTGTCATACTTTGGTA
Found at i:26892681 original size:77 final size:78
Alignment explanation
Indices: 26892549--26892720 Score: 186
Period size: 77 Copynumber: 2.2 Consensus size: 78
26892539 TTATATCCCC
* * * *
26892549 GATCGCACTTACATGCCACTATCGTACTTTGGTACCCCTGATCGCACTTACGTGCCCCTG-TCAT
1 GATCGCACTTACGTGCCACTATCATACTTCGGTACCCCTAATCGCACTTACGTGCCCCTGCT-AT
26892613 ACTTTGGTAC-CCT
65 ACTTTGGTACTCCT
** * * * * * *
26892626 GATCGCACTTACGTGCCTTTGTCATACTTCGGTACCTCTAATTGCACTTATGTGCCCTTGCTGTA
1 GATCGCACTTACGTGCCACTATCATACTTCGGTACCCCTAATCGCACTTACGTGCCCCTGCTATA
*
26892691 CTTTGGTACTCTT
66 CTTTGGTACTCCT
* *
26892704 GATAGCACTTTCGTGCC
1 GATCGCACTTACGTGCC
26892721 GTGGTAATGT
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
77 60 0.77
78 18 0.23
ACGTcount: A:0.17, C:0.30, G:0.18, T:0.35
Consensus pattern (78 bp):
GATCGCACTTACGTGCCACTATCATACTTCGGTACCCCTAATCGCACTTACGTGCCCCTGCTATA
CTTTGGTACTCCT
Found at i:26892869 original size:39 final size:39
Alignment explanation
Indices: 26892815--26892985 Score: 209
Period size: 39 Copynumber: 4.4 Consensus size: 39
26892805 ATTATATCCA
* *
26892815 TGATCGCACTTACGTGCCACTATCGTACTTCGGTACCCC
1 TGATCGCACTTACGTGCCCCTGTCGTACTTCGGTACCCC
* * *
26892854 TGATCGCTCTTACGTGCCCCTGTTGTACTTTGGTA-CCC
1 TGATCGCACTTACGTGCCCCTGTCGTACTTCGGTACCCC
* *
26892892 TGATCGCACTTACGTGCCCCTGTCGTACTTCGGAACCTC
1 TGATCGCACTTACGTGCCCCTGTCGTACTTCGGTACCCC
* * * * *
26892931 TGATTGCACTTACGTGCCCTTGTTGTACTTCGGTACTCT
1 TGATCGCACTTACGTGCCCCTGTCGTACTTCGGTACCCC
* *
26892970 TGATAGCACTTTCGTG
1 TGATCGCACTTACGTG
26892986 TCGTGGTTAT
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 34 0.30
39 78 0.70
ACGTcount: A:0.15, C:0.31, G:0.20, T:0.34
Consensus pattern (39 bp):
TGATCGCACTTACGTGCCCCTGTCGTACTTCGGTACCCC
Found at i:26892921 original size:19 final size:19
Alignment explanation
Indices: 26892822--26892921 Score: 71
Period size: 19 Copynumber: 5.2 Consensus size: 19
26892812 CCATGATCGC
* *
26892822 ACTTACGTGCCACTATCGT
1 ACTTACGTGCCCCTGTCGT
*
26892841 ACTT-CGGTACCCCTGATCGCT
1 ACTTAC-GTGCCCCTG-TCG-T
*
26892862 -CTTACGTGCCCCTGTTGT
1 ACTTACGTGCCCCTGTCGT
** * *
26892880 ACTTTGGT-ACCCTGATCGC
1 ACTTACGTGCCCCTG-TCGT
26892899 ACTTACGTGCCCCTGTCGT
1 ACTTACGTGCCCCTGTCGT
26892918 ACTT
1 ACTT
26892922 CGGAACCTCT
Statistics
Matches: 60, Mismatches: 14, Indels: 14
0.68 0.16 0.16
Matches are distributed among these distances:
18 7 0.12
19 32 0.53
20 19 0.32
21 2 0.03
ACGTcount: A:0.14, C:0.34, G:0.19, T:0.33
Consensus pattern (19 bp):
ACTTACGTGCCCCTGTCGT
Found at i:26892943 original size:77 final size:78
Alignment explanation
Indices: 26892815--26892985 Score: 236
Period size: 77 Copynumber: 2.2 Consensus size: 78
26892805 ATTATATCCA
* *
26892815 TGATCGCACTTACGTGCCACTATCGTACTTCGGTACCCCTGATCGCTCTTACGTGCCCCTGTTGT
1 TGATCGCACTTACGTGCCACTATCGTACTTCGGAACCCCTGATCGCACTTACGTGCCCCTGTTGT
*
26892880 ACTTTGGTAC-CC
66 ACTTCGGTACTCC
* * * * *
26892892 TGATCGCACTTACGTGCCCCTGTCGTACTTCGGAACCTCTGATTGCACTTACGTGCCCTTGTTGT
1 TGATCGCACTTACGTGCCACTATCGTACTTCGGAACCCCTGATCGCACTTACGTGCCCCTGTTGT
*
26892957 ACTTCGGTACTCT
66 ACTTCGGTACTCC
* *
26892970 TGATAGCACTTTCGTG
1 TGATCGCACTTACGTG
26892986 TCGTGGTTAT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
77 67 0.82
78 15 0.18
ACGTcount: A:0.15, C:0.31, G:0.20, T:0.34
Consensus pattern (78 bp):
TGATCGCACTTACGTGCCACTATCGTACTTCGGAACCCCTGATCGCACTTACGTGCCCCTGTTGT
ACTTCGGTACTCC
Found at i:26892968 original size:267 final size:267
Alignment explanation
Indices: 26892484--26893015 Score: 902
Period size: 267 Copynumber: 2.0 Consensus size: 267
26892474 AAATTATATC
*
26892484 ATTTAATTTCCTTATGTATTTGTATTTTATAATCAAGTAGTTAATTATTATATAATTATATCCCC
1 ATTTAATTTCCTTATGTATTTGTATTTTATAATCAAGTAGTTAATTATTATATAATTATATCCAC
*
26892549 GATCGCACTTACATGCCACTATCGTACTTTGGTACCCCTGATCGCACTTACGTGCCCCTGTCATA
66 GATCGCACTTACATGCCACTATCGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCTGTCATA
** * *
26892614 CTTTGGTACCCTGATCGCACTTACGTGCCTTTGTCATACTTCGGTACCTCTAATTGCACTTATGT
131 CTTTGGTACCCTGATCGCACTTACGTGCCCCTGTCATACTTCGGAACCTCTAATTGCACTTACGT
*
26892679 GCCCTTGCTGTACTTTGGTACTCTTGATAGCACTTTCGTGCCGTGGTAATGTTTCGGTAACATTT
196 GCCCTTGCTGTACTTCGGTACTCTTGATAGCACTTTCGTGCCGTGGTAATGTTTCGGTAACATTT
26892744 ATTAATT
261 ATTAATT
* *
26892751 ATTTTATTTCCTTATGTATTTGTATTTTATAATCAAGTAGTTAATTATTATATAATTATATCCAT
1 ATTTAATTTCCTTATGTATTTGTATTTTATAATCAAGTAGTTAATTATTATATAATTATATCCAC
* * **
26892816 GATCGCACTTACGTGCCACTATCGTACTTCGGTACCCCTGATCGCTCTTACGTGCCCCTGTTGTA
66 GATCGCACTTACATGCCACTATCGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCTGTCATA
* *
26892881 CTTTGGTACCCTGATCGCACTTACGTGCCCCTGTCGTACTTCGGAACCTCTGATTGCACTTACGT
131 CTTTGGTACCCTGATCGCACTTACGTGCCCCTGTCATACTTCGGAACCTCTAATTGCACTTACGT
* * *
26892946 GCCCTTGTTGTACTTCGGTACTCTTGATAGCACTTTCGTGTCGTGGTTATGTTTCGGTAACATTT
196 GCCCTTGCTGTACTTCGGTACTCTTGATAGCACTTTCGTGCCGTGGTAATGTTTCGGTAACATTT
26893011 ATTAA
261 ATTAA
26893016 GAAAAATAAT
Statistics
Matches: 247, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
267 247 1.00
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (267 bp):
ATTTAATTTCCTTATGTATTTGTATTTTATAATCAAGTAGTTAATTATTATATAATTATATCCAC
GATCGCACTTACATGCCACTATCGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCTGTCATA
CTTTGGTACCCTGATCGCACTTACGTGCCCCTGTCATACTTCGGAACCTCTAATTGCACTTACGT
GCCCTTGCTGTACTTCGGTACTCTTGATAGCACTTTCGTGCCGTGGTAATGTTTCGGTAACATTT
ATTAATT
Found at i:26898678 original size:14 final size:14
Alignment explanation
Indices: 26898659--26898685 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26898649 GTGTGTGATG
26898659 CAAGTAATTTAGAT
1 CAAGTAATTTAGAT
26898673 CAAGTAATTTAGA
1 CAAGTAATTTAGA
26898686 GATGTATTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33
Consensus pattern (14 bp):
CAAGTAATTTAGAT
Found at i:26916697 original size:38 final size:38
Alignment explanation
Indices: 26916653--26916725 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
26916643 TAAAATTGTG
*
26916653 AAAATCACTTGAAGTAACTAGAGCCTTATCTTTAAAGA
1 AAAATCACTTGAAGTAACTAGAGCCTTATCATTAAAGA
*
26916691 AAAATCACTTGAAGTGACTAGAGCCTTATCATTAA
1 AAAATCACTTGAAGTAACTAGAGCCTTATCATTAA
26916726 GGCGGTAGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (38 bp):
AAAATCACTTGAAGTAACTAGAGCCTTATCATTAAAGA
Found at i:26919008 original size:27 final size:27
Alignment explanation
Indices: 26918978--26919283 Score: 287
Period size: 27 Copynumber: 11.3 Consensus size: 27
26918968 GTATAACAAC
*
26918978 CATTTTACCCTATAGGGGTATTTCTGT
1 CATTTTACCCTATGGGGGTATTTCTGT
** *
26919005 CATTTTACCCTATGAAGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCTGT
* *
26919032 CATTTTACCTTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCTGT
* * ** *
26919059 CACTTTACCATATGCAGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCTGT
* *
26919086 CACTTTACCTTATGGGGGTATTT-TGGT
1 CATTTTACCCTATGGGGGTATTTCT-GT
**
26919113 CACGTTACCCTATGGGGGTATTT-TGGT
1 CATTTTACCCTATGGGGGTATTTCT-GT
* *
26919140 TATTTTACCCTATGGGGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCTGT
* ** *
26919167 TATTTTACCCTATAAGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCTGT
** *
26919194 CATTTTATACTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCTGT
*
26919221 CATTTTACCCTATAGGGGTATTT-TGGT
1 CATTTTACCCTATGGGGGTATTTCT-GT
* ***
26919248 TATTTTATTTTATGGGGGTA-TTCTGGT
1 CATTTTACCCTATGGGGGTATTTCT-GT
26919275 CATTTTACC
1 CATTTTACC
26919284 TATTTTGGGG
Statistics
Matches: 233, Mismatches: 42, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.01
27 231 0.99
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.44
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTATTTCTGT
Found at i:26919036 original size:54 final size:54
Alignment explanation
Indices: 26918978--26919283 Score: 330
Period size: 54 Copynumber: 5.7 Consensus size: 54
26918968 GTATAACAAC
* * *
26918978 CATTTTACCCTATAGGGGTATTTCTGTCATTTTACCCTATGAAGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAAGGTATTTCGGT
* * * *
26919032 CATTTTACCTTATGGGGGTATTTCGGTCACTTTACCATATGCAGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAAGGTATTTCGGT
* * * ** ** *
26919086 CACTTTACCTTATGGGGGTATTTTGGTCACGTTACCCTATGGGGGTATTTTGGT
1 CATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAAGGTATTTCGGT
* * *
26919140 TATTTTACCCTATGGGGGTATTTCAGTTATTTTACCCTAT-AAGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAA-GGTATTTCGGT
** * *
26919194 CATTTTATACTATGGGGGTATTTCGGTCATTTTACCCTAT-AGGGGTATTTTGGT
1 CATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGA-AGGTATTTCGGT
* ***
26919248 TATTTTATTTTATGGGGGTA-TTCTGGTCATTTTACC
1 CATTTTACCCTATGGGGGTATTTC-GGTCATTTTACC
26919284 TATTTTGGGG
Statistics
Matches: 214, Mismatches: 35, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
53 3 0.01
54 211 0.99
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.44
Consensus pattern (54 bp):
CATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGAAGGTATTTCGGT
Found at i:26919106 original size:81 final size:80
Alignment explanation
Indices: 26918978--26919284 Score: 321
Period size: 81 Copynumber: 3.8 Consensus size: 80
26918968 GTATAACAAC
* * *
26918978 CATTTTACCCTATAGGGGTATTTCTGTCATTTTACCCTATGAAGGTATTTCAGTCATTTTACCTT
1 CATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCTT
26919043 ATGGGGGTATTTCGGT
65 ATGGGGGTATTTCGGT
* * * * * * * ** *
26919059 CACTTTACCATATGCAGGTATTTCGGTCACTTTACCTTATGGGGGTATTTTGGTCACGTTACCCT
1 CATTTTACCCTATG-GGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCTT
*
26919124 ATGGGGGTATTTTGGT
65 ATGGGGGTATTTCGGT
* * * * *
26919140 TATTTTACCCTATGGGGGTATTTCAGTTATTTTACCCTATAAGGGTATTTCGGTCATTTTATAC-
1 CATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTA-CCT
26919204 TATGGGGGTATTTCGGT
64 TATGGGGGTATTTCGGT
* * *** *
26919221 CATTTTACCCTATAGGGGTATTTTGGTTATTTTATTTTATGGGGGTA-TTCTGGTCATTTTACCT
1 CATTTTACCCTAT-GGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTC-GGTCATTTTACCT
26919285 ATTTTGGGGT
Statistics
Matches: 182, Mismatches: 39, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
80 5 0.03
81 175 0.96
82 2 0.01
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.44
Consensus pattern (80 bp):
CATTTTACCCTATGGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCTTA
TGGGGGTATTTCGGT
Found at i:26922277 original size:27 final size:26
Alignment explanation
Indices: 26922247--26922608 Score: 293
Period size: 27 Copynumber: 13.5 Consensus size: 26
26922237 GGGATATAAT
*
26922247 AGTCATTTTACCCTATGGGGTTATGTC
1 AGTCATTTTACCCTATGGGG-TATTTC
** *
26922274 AGTCATTTTACATTATAAGGGTATTTC
1 AGTCATTTTACCCTAT-GGGGTATTTC
* *
26922301 -GATCATTCTACCCTATGGGGGTATTTT
1 AG-TCATTTTACCCTAT-GGGGTATTTC
*
26922328 ATTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTTTACCCTATG-GGGTATTTC
*
26922355 GGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTAT-GGGGTATTTC
* * * * *
26922382 GGTCACTTTACCTTATGGCGATATTTT
1 AGTCATTTTACCCTATGG-GGTATTTC
* *
26922409 GGTCACTTTACCCTATGAGGGTATTTC
1 AGTCATTTTACCCTATG-GGGTATTTC
*
26922436 AGTCATTTTA-CCTATAAGGGTATTTC
1 AGTCATTTTACCCTAT-GGGGTATTTC
26922462 -GATCATTTTACCCTATGGGAGTATTTC
1 AG-TCATTTTACCCTATGGG-GTATTTC
* * * * *
26922489 GGTCATTTTATCCTATGAAGTTATTTT
1 AGTCATTTTACCCTATG-GGGTATTTC
* * *
26922516 AATCATTTTACCCTATGGGGGTGTTCC
1 AGTCATTTTACCCTAT-GGGGTATTTC
*
26922543 GGTCATTTTACCCTATGAGGGTATTTTC
1 AGTCATTTTACCCTATG-GGGTA-TTTC
* *
26922571 -GTCATTTTACTCTATGGGGGTATTCTT
1 AGTCATTTTACCCTAT-GGGGTATT-TC
26922598 A-TCATTTTACC
1 AGTCATTTTACC
26922609 TATTTTAAGG
Statistics
Matches: 271, Mismatches: 45, Indels: 38
0.77 0.13 0.11
Matches are distributed among these distances:
25 1 0.00
26 31 0.11
27 227 0.84
28 12 0.04
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (26 bp):
AGTCATTTTACCCTATGGGGTATTTC
Found at i:26922334 original size:54 final size:54
Alignment explanation
Indices: 26922249--26922608 Score: 381
Period size: 54 Copynumber: 6.7 Consensus size: 54
26922239 GATATAATAG
* * **
26922249 TCATTTTACCCTATGGGGTTATGTCAGTCATTTTACATTATAAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGA
* * * * *
26922303 TCATTCTACCCTATGGGGGTATTTTATTCATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGA
* * * * *
26922357 TCATTTTACCCTATGGGGGTATTTCGGTCACTTTA-CCT-TATGGCGATATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAAGG-G-TATTTCGA
* *
26922411 TCACTTTACCCTATGAGGGTATTTCAGTCATTTTA-CCTATAAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGA
* * * * **
26922464 TCATTTTACCCTATGGGAGTATTTCGGTCATTTTATCCTATGAA-GTTATTTTAA
1 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTAT-AAGGGTATTTCGA
* * * *
26922518 TCATTTTACCCTATGGGGGTGTTCCGGTCATTTTACCCTATGAGGGTATTTTCG-
1 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAAGGGTA-TTTCGA
* *
26922572 TCATTTTACTCTATGGGGGTATTCTTA-TCATTTTACC
1 TCATTTTACCCTATGGGGGTATT-TCAGTCATTTTACC
26922609 TATTTTAAGG
Statistics
Matches: 254, Mismatches: 44, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
52 3 0.01
53 42 0.17
54 200 0.79
55 9 0.04
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (54 bp):
TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGA
Found at i:26922339 original size:81 final size:80
Alignment explanation
Indices: 26922248--26922608 Score: 375
Period size: 81 Copynumber: 4.5 Consensus size: 80
26922238 GGATATAATA
* ** *
26922248 GTCATTTTACCCTATGGGGTTATGTCAGTCATTTTACATTATAAGGGTATTTCGATCATTCTACC
1 GTCATTTTACCCTATGGGG-TATTTCAGTCATTTTACCCTATAAGGGTATTTCGATCATTTTACC
*
26922313 CTATGGGGGTATTTTA
65 CTATGGGGGTATTTTG
* * ** * *
26922329 TTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCACTTTACC
1 GTCATTTTACCCTATG-GGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGATCATTTTACC
* * *
26922394 TTATGGCGATATTTTG
65 CTATGGGGGTATTTTG
*
26922410 GTCACTTTACCCTATGAGGGTATTTCAGTCATTTTA-CCTATAAGGGTATTTCGATCATTTTACC
1 GTCATTTTACCCTATG-GGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGATCATTTTACC
* *
26922474 CTATGGGAGTATTTCG
65 CTATGGGGGTATTTTG
* * * * * ** * * *
26922490 GTCATTTTATCCTATGAAGTTATTTTAATCATTTTACCCTATGGGGGTGTTCCGGTCATTTTACC
1 GTCATTTTACCCTATG-GGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGATCATTTTACC
* *
26922555 CTATGAGGGTATTTTC
65 CTATGGGGGTATTTTG
* *
26922571 GTCATTTTACTCTATGGGGGTATTCTTA-TCATTTTACC
1 GTCATTTTACCCTAT-GGGGTATT-TCAGTCATTTTACC
26922609 TATTTTAAGG
Statistics
Matches: 231, Mismatches: 45, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
80 65 0.28
81 159 0.69
82 7 0.03
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (80 bp):
GTCATTTTACCCTATGGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGATCATTTTACCC
TATGGGGGTATTTTG
Found at i:26923035 original size:27 final size:27
Alignment explanation
Indices: 26923019--26923376 Score: 468
Period size: 27 Copynumber: 13.3 Consensus size: 27
26923009 TATAATAGTT
26923019 ATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
*
26923046 ATTTTACCCTATTGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
26923073 ATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* * *
26923100 ATTTTACCCTATGAGAGTATTTCAGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
26923127 ATTTTACCCTATGGGGGAATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
*
26923154 ACTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* * *
26923181 ACTTTACCCTATGGGAGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
** * *
26923208 ACCTTACCCTATGGGGGTATTTTGATC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* * *
26923235 ATTTTATCCTATGGGGGTATTTTGATC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
26923262 ATTTTACCCTATGTGGGTATTTCAGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
26923289 ATTTTACCCTGTAGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
* *
26923316 ATTTTATCCTAT-GGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGGTC
**
26923342 ATTTTACTTTATGGGGGTATTGT-GGTC
1 ATTTTACCCTATGGGGGTATT-TCGGTC
26923369 ATTTTACC
1 ATTTTACC
26923377 TATTTTGGGG
Statistics
Matches: 292, Mismatches: 37, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 22 0.08
27 269 0.92
28 1 0.00
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTCGGTC
Found at i:26923700 original size:54 final size:53
Alignment explanation
Indices: 26923637--26923738 Score: 159
Period size: 53 Copynumber: 1.9 Consensus size: 53
26923627 CACACGGCCC
* *
26923637 ATTTCGGTCATTTTATCCTATGTGGGTATTTCAGTCATTTTATCCTATGGGGCT
1 ATTTCGGTCATTTTATCCTACG-GGGTATTTCAGTCATTTTACCCTATGGGGCT
**
26923691 ATTTCGGTCATTTTATCCTACGGGGTATTTTGGTCATTTTACCCTATG
1 ATTTCGGTCATTTTATCCTACGGGGTATTTCAGTCATTTTACCCTATG
26923739 CAGGAGCTGG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 23 0.52
54 21 0.48
ACGTcount: A:0.17, C:0.18, G:0.20, T:0.46
Consensus pattern (53 bp):
ATTTCGGTCATTTTATCCTACGGGGTATTTCAGTCATTTTACCCTATGGGGCT
Found at i:26923726 original size:26 final size:26
Alignment explanation
Indices: 26923637--26923738 Score: 150
Period size: 27 Copynumber: 3.8 Consensus size: 26
26923627 CACACGGCCC
26923637 ATTTCGGTCATTTTATCCTATGTGGGT
1 ATTTCGGTCATTTTATCCTATG-GGGT
*
26923664 ATTTCAGTCATTTTATCCTATGGGGCT
1 ATTTCGGTCATTTTATCCTATGGGG-T
*
26923691 ATTTCGGTCATTTTATCCTACGGGGT
1 ATTTCGGTCATTTTATCCTATGGGGT
* *
26923717 ATTTTGGTCATTTTACCCTATG
1 ATTTCGGTCATTTTATCCTATG
26923739 CAGGAGCTGG
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 23 0.34
27 45 0.66
ACGTcount: A:0.17, C:0.18, G:0.20, T:0.46
Consensus pattern (26 bp):
ATTTCGGTCATTTTATCCTATGGGGT
Found at i:26923799 original size:46 final size:46
Alignment explanation
Indices: 26923749--26923846 Score: 106
Period size: 46 Copynumber: 2.1 Consensus size: 46
26923739 CAGGAGCTGG
* * * *
26923749 GAACCTAAACATGTATTCTCAAGTCTGCAACACATGTAGGAGCCCT
1 GAACCTAAACATGTAATCTCAAGTCCGCAACACATGCAGGAGCCCA
** * * * *
26923795 GAACCTATTCCTGTAATCTCGAGTCCGCAACATATGCAGGAGCTCA
1 GAACCTAAACATGTAATCTCAAGTCCGCAACACATGCAGGAGCCCA
26923841 GAACCT
1 GAACCT
26923847 GGGCAAAACT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
GAACCTAAACATGTAATCTCAAGTCCGCAACACATGCAGGAGCCCA
Found at i:26926203 original size:17 final size:17
Alignment explanation
Indices: 26926181--26926217 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26926171 TATGAGATGG
26926181 ATGTTT-AATTCATATAT
1 ATGTTTCAATT-ATATAT
26926198 ATGTTTCAATTATATAT
1 ATGTTTCAATTATATAT
26926215 ATG
1 ATG
26926218 CATGTTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.51
Consensus pattern (17 bp):
ATGTTTCAATTATATAT
Found at i:26932261 original size:349 final size:350
Alignment explanation
Indices: 26931621--26932313 Score: 1318
Period size: 349 Copynumber: 2.0 Consensus size: 350
26931611 ATTTATAACC
26931621 ATTAGCCCAACTTATTCAAAAGCTACCAAAATAGTCAATGGATAGTGTGGTTGTGCTTCGATGAA
1 ATTAGCCCAACTTATTCAAAAGCTACCAAAATAGTCAATGGATAGTGTGGTTGTGCTTCGATGAA
26931686 GATTCCAACCGATTGAGCCTTCCGATGATCTACAAAACAAGGAAAACAACTATATAAGAAACTAG
66 GATTCCAACCGATTGAGCCTTCCGATGATCTACAAAACAAGGAAAACAACTATATAAGAAACTAG
* *
26931751 TGCTTAGTAAGGTAGTATAAAGGAAACTTAAACTTACCGAACATATTAAATTAAACAACAAATAT
131 TGCTTAGTAAGGTAGTATAAAGGAAACTTAAACTTACCGAAAATATTAAATTAAACAACAAACAT
26931816 ACTTTCATCATGTCATATGCCAAACTTCCTTTCCTATACACACCACCTCATAAGGTTAGTAAGTA
196 ACTTTCATCATGTCATATGCCAAACTTCCTTTCCTATACACACCACCTCATAAGGTTAGTAAGTA
*
26931881 TAACATTACATATAAGTTTCAAGTAAATCATGACATACATGTAATAAGGATTTAAGCTTTATATA
261 TAACATTACATATAAGTTTCAAGTAAATCATGACATACACGTAATAAGGATTTAAGCTTTATATA
26931946 TCATCCATCACATATATATATATCA
326 TCATCCATCACATATATATATATCA
26931971 ATTAGCCCAACTTATTCAAAAGCTACCAAAATAGTCAATGGATAGTGTGGTTGTGC-TCTGATGA
1 ATTAGCCCAACTTATTCAAAAGCTACCAAAATAGTCAATGGATAGTGTGGTTGTGCTTC-GATGA
*
26932035 AGATTCCAACCGATTGAGCCTT-CGATGATCTACAAAACAAGGAAAATAACTATATAAGAAACTA
65 AGATTCCAACCGATTGAGCCTTCCGATGATCTACAAAACAAGGAAAACAACTATATAAGAAACTA
26932099 GTGCTTAGTAAGGTAGTATAAAGGAAACTTAAACTTACCGAAAATATTAAATTAAACAACAAACA
130 GTGCTTAGTAAGGTAGTATAAAGGAAACTTAAACTTACCGAAAATATTAAATTAAACAACAAACA
26932164 TACTTTCATCATGTCATATGCCAAACTTCCTTTCCTATACACACCACCTCATAAGGTTAGTAAGT
195 TACTTTCATCATGTCATATGCCAAACTTCCTTTCCTATACACACCACCTCATAAGGTTAGTAAGT
*
26932229 ATAACATTACATATAAGTTTCAAGTAAATCATGACATACACGTACTAAGGATTTAAGCTTTATAT
260 ATAACATTACATATAAGTTTCAAGTAAATCATGACATACACGTAATAAGGATTTAAGCTTTATAT
26932294 ATCATCCATCACATATATAT
325 ATCATCCATCACATATATAT
26932314 CCATTACACA
Statistics
Matches: 337, Mismatches: 5, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
349 254 0.75
350 83 0.25
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (350 bp):
ATTAGCCCAACTTATTCAAAAGCTACCAAAATAGTCAATGGATAGTGTGGTTGTGCTTCGATGAA
GATTCCAACCGATTGAGCCTTCCGATGATCTACAAAACAAGGAAAACAACTATATAAGAAACTAG
TGCTTAGTAAGGTAGTATAAAGGAAACTTAAACTTACCGAAAATATTAAATTAAACAACAAACAT
ACTTTCATCATGTCATATGCCAAACTTCCTTTCCTATACACACCACCTCATAAGGTTAGTAAGTA
TAACATTACATATAAGTTTCAAGTAAATCATGACATACACGTAATAAGGATTTAAGCTTTATATA
TCATCCATCACATATATATATATCA
Found at i:26934698 original size:26 final size:26
Alignment explanation
Indices: 26934668--26934967 Score: 348
Period size: 26 Copynumber: 11.5 Consensus size: 26
26934658 GCTGGTATGG
* * *
26934668 TTACCGAAATACCATCAATGGGTAAA
1 TTACCAAAATACCCTCGATGGGTAAA
*
26934694 TTACCAAAATACCCTCAATGGGTAAA
1 TTACCAAAATACCCTCGATGGGTAAA
*
26934720 TTATCAAAATACCCTCGATGGGTAAA
1 TTACCAAAATACCCTCGATGGGTAAA
* *
26934746 TTACTAAAATACCCTCGATGGATAAA
1 TTACCAAAATACCCTCGATGGGTAAA
* *
26934772 TTACTAAAATACCCTCAATGGGTAAA
1 TTACCAAAATACCCTCGATGGGTAAA
* * * *
26934798 CTACCGAACTACCCTCGATGGGAAAA
1 TTACCAAAATACCCTCGATGGGTAAA
* * * *
26934824 TCATCGAGATACCCTCGATGGGTAAA
1 TTACCAAAATACCCTCGATGGGTAAA
*
26934850 TTACCAAAATACCCTTGATGGGTAAA
1 TTACCAAAATACCCTCGATGGGTAAA
* * * *
26934876 TTATCGAAATACACTCGACGGGTAAA
1 TTACCAAAATACCCTCGATGGGTAAA
* **
26934902 TTTCCAAAATACCCTTAATGGGTAAA
1 TTACCAAAATACCCTCGATGGGTAAA
* *
26934928 TTACCGAAATTCCCTCGATGGGTAAA
1 TTACCAAAATACCCTCGATGGGTAAA
*
26934954 TTACTAAAATACCC
1 TTACCAAAATACCC
26934968 CGAGAAGGGT
Statistics
Matches: 228, Mismatches: 46, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 228 1.00
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (26 bp):
TTACCAAAATACCCTCGATGGGTAAA
Found at i:26942122 original size:26 final size:26
Alignment explanation
Indices: 26942086--26942203 Score: 175
Period size: 26 Copynumber: 4.5 Consensus size: 26
26942076 GCTCGCGTGG
* *
26942086 TTATTGAAATACCCTCAATGGGTAAA
1 TTATCGAAATACCCTCGATGGGTAAA
*
26942112 TTATCAAAATACCCTCGATGGGTAAA
1 TTATCGAAATACCCTCGATGGGTAAA
26942138 TTATCGAAATACCCTCGATGGGTAAA
1 TTATCGAAATACCCTCGATGGGTAAA
*
26942164 TTA-CTGAATTACCCTCGATGGGTAAA
1 TTATC-GAAATACCCTCGATGGGTAAA
*
26942190 TTATTGAAATACCC
1 TTATCGAAATACCC
26942204 CAGAATGATA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
25 1 0.01
26 82 0.99
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (26 bp):
TTATCGAAATACCCTCGATGGGTAAA
Found at i:26942390 original size:26 final size:28
Alignment explanation
Indices: 26942357--26942415 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
26942347 ATAGAGGAAA
26942357 TACTGTTTCT-GTGGCTCTGCCACA-AT
1 TACTGTTTCTGGTGGCTCTGCCACATAT
*
26942383 TACTGTTTCTGGTGGCTTTGCCACATAT
1 TACTGTTTCTGGTGGCTCTGCCACATAT
26942411 T-CTGT
1 TACTGT
26942416 ACTGGCAGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 10 0.33
27 17 0.57
28 3 0.10
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.42
Consensus pattern (28 bp):
TACTGTTTCTGGTGGCTCTGCCACATAT
Found at i:26955285 original size:107 final size:107
Alignment explanation
Indices: 26955080--26955289 Score: 321
Period size: 107 Copynumber: 2.0 Consensus size: 107
26955070 AATCAATACA
* *
26955080 AAAATAGAAGTGGATAAGGACCACAATCCAATTTCTATAACCCTTCATGGGGAAACCATCCAAAC
1 AAAATAGAAGTGGACAAGGACCACAATCCAATTTCTATAACCCTTCATGGGGAAACCATCCAAAA
** * * *
26955145 TTTTCTTGGAGTAATCAAGGAAATAAACCGAACAACAACACG
66 TTTTCTTAAAATAACCAAGAAAATAAACCGAACAACAACACG
* *
26955187 AAAATAGAAGTGGACAAGGACCAGAGTCCAATTTCTATAACCCTTCATGGGGAAACCATCCAAAA
1 AAAATAGAAGTGGACAAGGACCACAATCCAATTTCTATAACCCTTCATGGGGAAACCATCCAAAA
* *
26955252 TTTTCTTAAAATAACCAAGAAAATGAACTGAACAACAA
66 TTTTCTTAAAATAACCAAGAAAATAAACCGAACAACAA
26955290 TTACATGCAA
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
107 92 1.00
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.20
Consensus pattern (107 bp):
AAAATAGAAGTGGACAAGGACCACAATCCAATTTCTATAACCCTTCATGGGGAAACCATCCAAAA
TTTTCTTAAAATAACCAAGAAAATAAACCGAACAACAACACG
Found at i:26978668 original size:54 final size:54
Alignment explanation
Indices: 26978586--26978696 Score: 204
Period size: 54 Copynumber: 2.1 Consensus size: 54
26978576 CAGTCTGACC
* *
26978586 CTAAGCTAGCTAGCTCAGTATTTACTTACCCCAAGCTTTAAATCAAAGACAGCT
1 CTAAGCTAGCTAGCTCACTATTTACTTACCCCAAGCTTTAAATCAAAGACAACT
26978640 CTAAGCTAGCTAGCTCACTATTTACTTACCCCAAGCTTTAAATCAAAGACAACT
1 CTAAGCTAGCTAGCTCACTATTTACTTACCCCAAGCTTTAAATCAAAGACAACT
26978694 CTA
1 CTA
26978697 GCTCTATCCC
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (54 bp):
CTAAGCTAGCTAGCTCACTATTTACTTACCCCAAGCTTTAAATCAAAGACAACT
Found at i:26979656 original size:43 final size:43
Alignment explanation
Indices: 26979600--26979820 Score: 193
Period size: 43 Copynumber: 5.2 Consensus size: 43
26979590 ATATATGTGA
26979600 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCG-TTTCTCAC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTCTC-C
* * **
26979643 AAAAACGCTGCTATAGAAGATGACCTTTAATGGCGCTTTC-CC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTCTCC
* * * *
26979685 TACAGACGCCACTATAGAACATGACCTTTAGCGACGCTTT-TCCC
1 -AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTCT-CC
* * * ** *
26979729 ACAAACGCCGCTAAAGAACATGACCTTCAGTAGCGCTTTCCCC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTCTCC
* * * * * *
26979772 ACAAA---CGCTAAAAAACATGACCTTTAGCGACGCTTTTTCA
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTCTCC
26979812 AAAAACGCC
1 AAAAACGCC
26979821 TATAACTCCC
Statistics
Matches: 141, Mismatches: 29, Indels: 16
0.76 0.16 0.09
Matches are distributed among these distances:
40 31 0.22
42 1 0.01
43 103 0.73
44 6 0.04
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTCTCC
Found at i:26979706 original size:86 final size:85
Alignment explanation
Indices: 26979602--26979820 Score: 257
Period size: 86 Copynumber: 2.6 Consensus size: 85
26979592 ATATGTGAAA
* * * *
26979602 AAACGCCGCTATAGAACATGACCTTTAGCGGCG-TTTCTCACAAAAACGCTGCTATAGAAGATGA
1 AAACGCC-CTATAGAACATGACCTTTAGCGACGCTTT-TCACAAAAACGCCGCTAAAGAACATGA
* * *
26979666 CCTTTAATGGCGCTTTCCCTAC
64 CCTTCAATAGCGCTTTCCCCAC
* * *
26979688 AGACGCCACTATAGAACATGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGAACATGAC
1 AAACGCC-CTATAGAACATGACCTTTAGCGACGCTTTTCACAAAAACGCCGCTAAAGAACATGAC
*
26979753 CTTCAGTAGCGCTTTCCCCAC
65 CTTCAATAGCGCTTTCCCCAC
* *
26979774 AAACG--CTAAAAAACATGACCTTTAGCGACGCTTTTTCA-AAAAACGCC
1 AAACGCCCTATAGAACATGACCTTTAGCGACGC-TTTTCACAAAAACGCC
26979821 TATAACTCCC
Statistics
Matches: 114, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
83 32 0.28
84 5 0.04
86 74 0.65
87 3 0.03
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (85 bp):
AAACGCCCTATAGAACATGACCTTTAGCGACGCTTTTCACAAAAACGCCGCTAAAGAACATGACC
TTCAATAGCGCTTTCCCCAC
Found at i:26979818 original size:40 final size:40
Alignment explanation
Indices: 26979702--26979819 Score: 112
Period size: 40 Copynumber: 2.9 Consensus size: 40
26979692 GCCACTATAG
** *
26979702 AACATGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAAAG
1 AACATGACCTTTAGCGACGCTTTT-CCA-AAA-AACGCTAAAA
* * * * *
26979745 AACATGACCTTCAG-TAGCGCTTTCCCCACAAACGCTAAAA
1 AACATGACCTTTAGCGA-CGCTTTTCCAAAAAACGCTAAAA
*
26979785 AACATGACCTTTAGCGACGCTTTTTCAAAAAACGC
1 AACATGACCTTTAGCGACGCTTTTCCAAAAAACGC
26979820 CTATAACTCC
Statistics
Matches: 59, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
40 34 0.58
41 3 0.05
42 3 0.05
43 19 0.32
ACGTcount: A:0.33, C:0.31, G:0.14, T:0.22
Consensus pattern (40 bp):
AACATGACCTTTAGCGACGCTTTTCCAAAAAACGCTAAAA
Found at i:26980828 original size:21 final size:21
Alignment explanation
Indices: 26980802--26980846 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
26980792 CGATCAAAGG
26980802 TAAGTATGTAGGCTAGCATTC
1 TAAGTATGTAGGCTAGCATTC
26980823 TAAGTATGTAGGCTAGCATTC
1 TAAGTATGTAGGCTAGCATTC
26980844 TAA
1 TAA
26980847 AGTGTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.33
Consensus pattern (21 bp):
TAAGTATGTAGGCTAGCATTC
Found at i:26981811 original size:26 final size:26
Alignment explanation
Indices: 26981781--26981830 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26981771 AAGTATACTA
*
26981781 TACTGGAAACTTTGTTGCGATACTGT
1 TACTGGAAACTTTGCTGCGATACTGT
* **
26981807 TACTGGCAGTTTTGCTGCGATACT
1 TACTGGAAACTTTGCTGCGATACT
26981831 ATTATTGACA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (26 bp):
TACTGGAAACTTTGCTGCGATACTGT
Found at i:26981846 original size:26 final size:26
Alignment explanation
Indices: 26981790--26981854 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
26981780 ATACTGGAAA
* * *
26981790 CTTTGTTGCGATACTGTTACTGGCAG
1 CTTTGCTGCGATACTATTACTGACAG
* *
26981816 TTTTGCTGCGATACTATTATTGACAG
1 CTTTGCTGCGATACTATTACTGACAG
*
26981842 CTTTGCTACGATA
1 CTTTGCTGCGATA
26981855 TTGGTGTGTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (26 bp):
CTTTGCTGCGATACTATTACTGACAG
Found at i:26981993 original size:33 final size:33
Alignment explanation
Indices: 26981951--26982016 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
26981941 TGCATTATTG
* *
26981951 CACTGTACTGATATTGTATTGGGCTAAGGCCCA
1 CACTGTACTGATATTGAATAGGGCTAAGGCCCA
* *
26981984 CACTGTACTGTTATTGAATAGGGCTCAGGCCCA
1 CACTGTACTGATATTGAATAGGGCTAAGGCCCA
26982017 GACTATTACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (33 bp):
CACTGTACTGATATTGAATAGGGCTAAGGCCCA
Found at i:26987948 original size:18 final size:18
Alignment explanation
Indices: 26987925--26987967 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
26987915 AAAGACAGTT
26987925 GAATAAGT-TGACTATTAA
1 GAATAAGTAT-ACTATTAA
*
26987943 GAATAAGTATCCTATTAA
1 GAATAAGTATACTATTAA
26987961 GAATAAG
1 GAATAAG
26987968 AGAAAATCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 22 0.96
19 1 0.04
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.30
Consensus pattern (18 bp):
GAATAAGTATACTATTAA
Found at i:27006380 original size:31 final size:32
Alignment explanation
Indices: 27006323--27006382 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
27006313 ATATATAAAA
**
27006323 AAAAGAATGAAAGAACAAAGGTAAGTTTGTTC
1 AAAAGAATGAAAGAACAAAGAAAAGTTTGTTC
27006355 AAAAGAAT-AAA-AAGCAAAGAAAAGTTTG
1 AAAAGAATGAAAGAA-CAAAGAAAAGTTTG
27006383 CCCAAAGTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 2 0.08
31 15 0.60
32 8 0.32
ACGTcount: A:0.57, C:0.05, G:0.20, T:0.18
Consensus pattern (32 bp):
AAAAGAATGAAAGAACAAAGAAAAGTTTGTTC
Found at i:27022685 original size:43 final size:43
Alignment explanation
Indices: 27022628--27022736 Score: 139
Period size: 43 Copynumber: 2.6 Consensus size: 43
27022618 AGAAAAACAC
* *
27022628 CACTATAGACCATGACCTTTAGCGGCGTTTCTCACAAAAATGT
1 CACTATAGAACATGACCTTTAGCGGCGTTTCTCACAAAAACGT
* * *
27022671 CACTATAGAACATGACCTTTAGCGGCGTTTTTCCCACAAACGT
1 CACTATAGAACATGACCTTTAGCGGCGTTTCTCACAAAAACGT
** *
27022714 TGCTAAAGAACATG-CCTTTAGCG
1 CACTATAGAACATGACCTTTAGCG
27022737 ACGCTTATAG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 9 0.16
43 49 0.84
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
CACTATAGAACATGACCTTTAGCGGCGTTTCTCACAAAAACGT
Found at i:27031504 original size:16 final size:16
Alignment explanation
Indices: 27031485--27031521 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
27031475 ACTTTCTGTG
27031485 TATTTGAATA-TAAGAA
1 TATTT-AATACTAAGAA
27031501 TATTTAATACTAAGAA
1 TATTTAATACTAAGAA
27031517 T-TTTA
1 TATTTA
27031522 TTAAATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.43
Consensus pattern (16 bp):
TATTTAATACTAAGAA
Found at i:27031632 original size:61 final size:61
Alignment explanation
Indices: 27031567--27031757 Score: 214
Period size: 61 Copynumber: 3.2 Consensus size: 61
27031557 ATTTTATAGT
27031567 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAA
* ** * * * * * * *
27031628 ATTATATATTTTCG-TTAAATTATATTTA-ATAATAATTATTTTAA-A-TTA-TATTTTA-TAGT
1 ATTATATATTAT-GATTTTAGTAAATTCATATAAGAA-TA-TTTAATACTAAGAATTTTATTA-A
27031687 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAA
27031748 ATTATATATT
1 ATTATATATT
27031758 TTTGTTAAAT
Statistics
Matches: 100, Mismatches: 20, Indels: 20
0.71 0.14 0.14
Matches are distributed among these distances:
58 8 0.08
59 29 0.29
60 16 0.16
61 39 0.39
62 8 0.08
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (61 bp):
ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAA
Found at i:27031656 original size:120 final size:120
Alignment explanation
Indices: 27031522--27031838 Score: 607
Period size: 120 Copynumber: 2.6 Consensus size: 120
27031512 AAGAATTTTA
27031522 TTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
1 TTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
27031587 TAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTCG
66 TAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTCG
*
27031642 TTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
1 TTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
*
27031707 TAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTG
66 TAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTCG
*
27031762 TTAAATTATATTTAATAATTATTATTTTAAGTTATATTTTATAGTATTATATATTATGATTTTAG
1 TTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
27031827 TAAATTCATATA
66 TAAATTCATATA
27031839 TTTTATTAAA
Statistics
Matches: 193, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 193 1.00
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (120 bp):
TTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAG
TAAATTCATATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTCG
Found at i:27031760 original size:18 final size:17
Alignment explanation
Indices: 27031738--27031872 Score: 95
Period size: 18 Copynumber: 8.0 Consensus size: 17
27031728 AATACTAAGA
27031738 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
27031755 ATTTTTGTTAAA-T-TAT
1 A-TTTTATTAAATTATAT
*
27031771 A-TTTAAT-AATTAT-T
1 ATTTTATTAAATTATAT
* *
27031785 ATTTTAAGTTATATTTTAT
1 ATTTT-A-TTAAATTATAT
* * *
27031804 AGTATTA-TATATTAT-G
1 A-TTTTATTAAATTATAT
*
27031820 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
27031838 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
27031855 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
27031873 TTAATAATAA
Statistics
Matches: 92, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.08
15 8 0.09
16 11 0.12
17 17 0.18
18 41 0.45
19 3 0.03
20 3 0.03
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.58
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:27031811 original size:15 final size:14
Alignment explanation
Indices: 27031766--27031822 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 14
27031756 TTTTTGTTAA
*
27031766 ATTATATTTAATA-
1 ATTATATTTTATAG
27031779 ATTATTATTTTA-AG
1 ATTA-TATTTTATAG
27031793 -TTATATTTTATAG
1 ATTATATTTTATAG
*
27031806 TATTATATATTAT-G
1 -ATTATATTTTATAG
27031820 ATT
1 ATT
27031823 TTAGTAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 7 0.19
13 13 0.35
14 7 0.19
15 10 0.27
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (14 bp):
ATTATATTTTATAG
Found at i:27032097 original size:44 final size:46
Alignment explanation
Indices: 27032027--27032118 Score: 134
Period size: 44 Copynumber: 2.0 Consensus size: 46
27032017 TTATTACACA
* * *
27032027 TCTATTCCATTCAACCGAACACAAGAA-TACC-ATTACGCCTCTAT
1 TCTATTCCATTCAACCAAACAAAAGAATTACCTATCACGCCTCTAT
*
27032071 TCTATTCCATTCAACCAAACAAAAGAATTACCTATCACGCTTCTAT
1 TCTATTCCATTCAACCAAACAAAAGAATTACCTATCACGCCTCTAT
27032117 TC
1 TC
27032119 CATTACACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 25 0.60
45 4 0.10
46 13 0.31
ACGTcount: A:0.35, C:0.30, G:0.05, T:0.29
Consensus pattern (46 bp):
TCTATTCCATTCAACCAAACAAAAGAATTACCTATCACGCCTCTAT
Found at i:27033601 original size:72 final size:73
Alignment explanation
Indices: 27033385--27033633 Score: 256
Period size: 72 Copynumber: 3.5 Consensus size: 73
27033375 ACTAACCTTC
* ** ** * *
27033385 TAAAAACATATTACCGAATAAA-GGATTTTACTTAATATCAAAACTCAATAAATCAAATTAATTT
1 TAAAAACATATAATTGAATAAACGGATTTTACTTAATATCAAAACTCAATAAATTGAACTAAATT
* *
27033449 AA-TCTTC
66 AACTTTTT
* * * *
27033456 TCAAAACATATAACTTGAATAAACGGA-TTTACTTAATATCGAAACTCAATGAATTGAACTAAAA
1 TAAAAACATATAA-TTGAATAAACGGATTTTACTTAATATCAAAACTCAATAAATTGAACTAAAT
* *
27033520 TAGCCTTTT
65 TAACTTTTT
* * *
27033529 TAAAAACACATAATTGAATAAACGG-TTCTACTTAATATCAAAATTCAATAAATTGAACTAAATT
1 TAAAAACATATAATTGAATAAACGGATTTTACTTAATATCAAAACTCAATAAATTGAACTAAATT
27033593 AACTTTTT
66 AACTTTTT
* * * *
27033601 TTAAAACGTATAATTGAACAAGCGG-TTTTACTT
1 TAAAAACATATAATTGAATAAACGGATTTTACTT
27033634 TGTATAACAG
Statistics
Matches: 144, Mismatches: 30, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
71 11 0.08
72 117 0.81
73 16 0.11
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.34
Consensus pattern (73 bp):
TAAAAACATATAATTGAATAAACGGATTTTACTTAATATCAAAACTCAATAAATTGAACTAAATT
AACTTTTT
Found at i:27033729 original size:99 final size:99
Alignment explanation
Indices: 27033544--27033732 Score: 252
Period size: 99 Copynumber: 1.9 Consensus size: 99
27033534 ACACATAATT
* * * * * * *
27033544 GAATAAACGGTTCTACTTAATATCAAAATTCAATAAATTGAACTAAATTAACTTTTTTTAAAACG
1 GAATAAACGGTGCCACTTAATATCAAAACTCAATAAATAGAACTAAATTAACCTTTTTAAAAACA
* * * *
27033609 TATAATTGAACAAGCGGTTTTACTTTGTATAACA
66 CATAATTAAACAAACGATTTTACTTTGTATAACA
* *
27033643 GAATAAATGGTGCCACTTAATATCAAAACTCAATAAATAGAACTAAATTAACCTTTTTAAAAATA
1 GAATAAACGGTGCCACTTAATATCAAAACTCAATAAATAGAACTAAATTAACCTTTTTAAAAACA
*
27033708 CATAATTAAATAAACGATTTTACTT
66 CATAATTAAACAAACGATTTTACTT
27033733 GATAATTAAT
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
99 76 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.34
Consensus pattern (99 bp):
GAATAAACGGTGCCACTTAATATCAAAACTCAATAAATAGAACTAAATTAACCTTTTTAAAAACA
CATAATTAAACAAACGATTTTACTTTGTATAACA
Found at i:27034161 original size:23 final size:23
Alignment explanation
Indices: 27034131--27034175 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
27034121 AGTTTGCAAG
27034131 TATAGGACAATGAAGGCTTTAAA
1 TATAGGACAATGAAGGCTTTAAA
27034154 TATAGGACAATGAAGGCTTTAA
1 TATAGGACAATGAAGGCTTTAA
27034176 CAGTTTGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (23 bp):
TATAGGACAATGAAGGCTTTAAA
Found at i:27035954 original size:37 final size:37
Alignment explanation
Indices: 27035904--27035985 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
27035894 TGTATCAAAT
* *
27035904 AAAAGGGAATTGGGAAAAATGGCACCGTTTGCGGAAG
1 AAAAGGGAATTGGGAAAAACGGCACCGTTTGCGAAAG
*
27035941 AAAAGGGAATTGGGAAAAACGGCATCGTTTGCGAAAG
1 AAAAGGGAATTGGGAAAAACGGCACCGTTTGCGAAAG
27035978 AAAAGGGA
1 AAAAGGGA
27035986 TCAGTTTGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.41, C:0.10, G:0.34, T:0.15
Consensus pattern (37 bp):
AAAAGGGAATTGGGAAAAACGGCACCGTTTGCGAAAG
Found at i:27044209 original size:17 final size:18
Alignment explanation
Indices: 27044173--27044227 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 18
27044163 ATTATAAAAA
**
27044173 AAATT-ATAAATAATAAT
1 AAATTAATAAATTTTAAT
*
27044190 AAA-TAATAAATTTTATT
1 AAATTAATAAATTTTAAT
*
27044207 AAATTATTAAATTTTAAT
1 AAATTAATAAATTTTAAT
27044225 AAA
1 AAA
27044228 AATTTTATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 1 0.03
17 15 0.48
18 15 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATTAATAAATTTTAAT
Found at i:27044232 original size:12 final size:12
Alignment explanation
Indices: 27044215--27044244 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
27044205 TTAAATTATT
27044215 AAATTTTAATAA
1 AAATTTTAATAA
*
27044227 AAATTTTATTAA
1 AAATTTTAATAA
27044239 AAATTT
1 AAATTT
27044245 GAATTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AAATTTTAATAA
Found at i:27044607 original size:90 final size:87
Alignment explanation
Indices: 27044424--27044607 Score: 201
Period size: 88 Copynumber: 2.1 Consensus size: 87
27044414 AATTGATGGT
* * * * * *
27044424 CTTTTTGATGCATTTTGAAAGTTAAGTACCTAATTAAGTGAAAAAAGAAAGTAGGGGCTTAATTG
1 CTTTTTAATGCATTTTGAAAGTTAAGTACCCAAATAAGTGAAAAAAAAAAGCAGGGACTTAATTG
* *
27044489 CTTTTTTTTAAAGGTTTGAAGGC
66 C-TTTTTTAAAAAGTTTGAAGGC
* *
27044512 CTTTTTAATGCATTTTGAAAGTTCAAGTACCCAAATGAGTGCAAAAAAAAAAGAAACAGTGACTT
1 CTTTTTAATGCATTTTGAAAGTT-AAGTACCCAAATAAGTG-AAAAAAAAAAG---CAGGGACTT
27044577 AATTG-TTTTTTAAAAAGTTTG-AGGC
61 AATTGCTTTTTTAAAAAGTTTGAAGGC
*
27044602 GTTTTT
1 CTTTTT
27044608 GCACCCTTAA
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
88 22 0.28
89 14 0.17
90 19 0.24
91 14 0.17
93 11 0.14
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.36
Consensus pattern (87 bp):
CTTTTTAATGCATTTTGAAAGTTAAGTACCCAAATAAGTGAAAAAAAAAAGCAGGGACTTAATTG
CTTTTTTAAAAAGTTTGAAGGC
Found at i:27047509 original size:24 final size:23
Alignment explanation
Indices: 27047478--27047523 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
27047468 ATAATTGAGA
27047478 AGAAAACAGAGAA-GAAAATAGAT
1 AGAAAACA-AGAAGGAAAATAGAT
*
27047501 AGAATAACAAGAAGGAGAATAGA
1 AGAA-AACAAGAAGGAAAATAGA
27047524 GAAGGGAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.63, C:0.04, G:0.24, T:0.09
Consensus pattern (23 bp):
AGAAAACAAGAAGGAAAATAGAT
Found at i:27058620 original size:30 final size:30
Alignment explanation
Indices: 27058563--27058621 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
27058553 GCATATATAT
* * * *
27058563 AAAAGAAATATACATGCATGTAGATTACAA
1 AAAAAAAATATACATACATATAAATTACAA
*
27058593 AAAAAAAATATACATATATATAAATTACA
1 AAAAAAAATATACATACATATAAATTACA
27058622 TTATTAATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.59, C:0.08, G:0.07, T:0.25
Consensus pattern (30 bp):
AAAAAAAATATACATACATATAAATTACAA
Found at i:27060629 original size:25 final size:25
Alignment explanation
Indices: 27060565--27060629 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
27060555 GTCATTAAGG
* *
27060565 TTACCGAT-TTCAGCTCTTATGAGC
1 TTACCGATATTTAGCTCGTATGAGC
* * *
27060589 TTACTGATACTCAGCTCGTATGAGC
1 TTACCGATATTTAGCTCGTATGAGC
*
27060614 TTACCGTTATTTAGCT
1 TTACCGATATTTAGCT
27060630 GGGGGAGCTT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
24 7 0.21
25 26 0.79
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (25 bp):
TTACCGATATTTAGCTCGTATGAGC
Found at i:27060847 original size:13 final size:13
Alignment explanation
Indices: 27060829--27060862 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
27060819 AAATGATTTG
27060829 TACATGATATAGA
1 TACATGATATAGA
27060842 TACATGATATAGA
1 TACATGATATAGA
27060855 TACATGAT
1 TACATGAT
27060863 TTGGAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (13 bp):
TACATGATATAGA
Found at i:27063781 original size:28 final size:28
Alignment explanation
Indices: 27063745--27063807 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
27063735 CAGTGATAGT
27063745 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
*
27063773 ACAGTGTGGGCTTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
27063801 ACAGTGT
1 ACAGTGT
27063808 AGTGCAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:27064187 original size:27 final size:27
Alignment explanation
Indices: 27064137--27064188 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
27064127 ACATAAGGCC
* *
27064137 ATAATAGTCATTTTATCTCCTAGGGGT
1 ATAATAGTCATTTTACCTCATAGGGGT
27064164 ATAATAGTCATTTTAACCT-ATAGGG
1 ATAATAGTCATTTT-ACCTCATAGGG
27064189 TATTTCGGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.38
Consensus pattern (27 bp):
ATAATAGTCATTTTACCTCATAGGGGT
Found at i:27064225 original size:27 final size:27
Alignment explanation
Indices: 27064170--27064412 Score: 325
Period size: 27 Copynumber: 9.1 Consensus size: 27
27064160 GGGTATAATA
* *
27064170 GTCATTTTAACCTAT-AGGGTATTTCG
1 GTCATTCTACCCTATGAGGGTATTTCG
* *
27064196 GTCATTTTACCCTATGAAGGTATTTCG
1 GTCATTCTACCCTATGAGGGTATTTCG
27064223 GTCATTCTACCCTATGAGGGTATTTCG
1 GTCATTCTACCCTATGAGGGTATTTCG
*
27064250 GTCATTCTACCATATG-GGGTATTTCG
1 GTCATTCTACCCTATGAGGGTATTTCG
* *
27064276 ATCATTTTACCCTAT-AGAGGTATTTCG
1 GTCATTCTACCCTATGAG-GGTATTTCG
* *
27064303 ATCATTTTACCCTATTG-GGGTATTTCG
1 GTCATTCTACCCTA-TGAGGGTATTTCG
27064330 GTCATTCTACCCTATG-GGAGTATTTCG
1 GTCATTCTACCCTATGAGG-GTATTTCG
*
27064357 GTCATTCTACCCTATGGGGGTATTTCG
1 GTCATTCTACCCTATGAGGGTATTTCG
*
27064384 GTCATTCTACCCTATGAGGGTGTTTCG
1 GTCATTCTACCCTATGAGGGTATTTCG
27064411 GT
1 GT
27064413 GTAGATATCG
Statistics
Matches: 198, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
26 41 0.21
27 153 0.77
28 4 0.02
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (27 bp):
GTCATTCTACCCTATGAGGGTATTTCG
Found at i:27069166 original size:28 final size:29
Alignment explanation
Indices: 27069135--27069192 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
27069125 TTGGATATCA
*
27069135 CTTACTGATCACAC-TTTTGGTAGATACC
1 CTTACTGATCAAACTTTTTGGTAGATACC
*
27069163 CTTACTGATCAAACTTTTTGGTGGATACC
1 CTTACTGATCAAACTTTTTGGTAGATACC
27069192 C
1 C
27069193 GTGATCTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 13 0.48
29 14 0.52
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (29 bp):
CTTACTGATCAAACTTTTTGGTAGATACC
Found at i:27071004 original size:16 final size:15
Alignment explanation
Indices: 27070985--27071014 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
27070975 TTCATTTCAT
27070985 TTGCATTTAGGTTAAC
1 TTGCATTTA-GTTAAC
27071001 TTGCATTTAGTTAA
1 TTGCATTTAGTTAA
27071015 TTAACTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.47
Consensus pattern (15 bp):
TTGCATTTAGTTAAC
Found at i:27071525 original size:20 final size:20
Alignment explanation
Indices: 27071409--27071525 Score: 65
Period size: 20 Copynumber: 5.7 Consensus size: 20
27071399 GATAGACAAC
**
27071409 GCCACAAAGGCTAGTAGAAT
1 GCCACAAAGGCTAACAGAAT
* * **
27071429 GCCACCCAAGCCATATTAGAAT
1 GCCA-CAAAGGC-TAACAGAAT
* * *
27071451 ACCACAGAGACTAACAGAAT
1 GCCACAAAGGCTAACAGAAT
*
27071471 GCCACAAAGGCAATATA-AAAAT
1 GCCACAAAGGC--TA-ACAGAAT
* * *
27071493 ACCATAGAGGCTAACAGAAT
1 GCCACAAAGGCTAACAGAAT
27071513 GCCACAAAGGCTA
1 GCCACAAAGGCTA
27071526 TATCAAAATA
Statistics
Matches: 71, Mismatches: 20, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
19 1 0.01
20 35 0.49
21 9 0.13
22 25 0.35
23 1 0.01
ACGTcount: A:0.44, C:0.24, G:0.18, T:0.14
Consensus pattern (20 bp):
GCCACAAAGGCTAACAGAAT
Found at i:27071560 original size:20 final size:20
Alignment explanation
Indices: 27071490--27071607 Score: 92
Period size: 20 Copynumber: 5.7 Consensus size: 20
27071480 GCAATATAAA
* *
27071490 AATACCATAGAGGCTAACAG
1 AATACCATAAAGGCTAATAG
* * *
27071510 AATGCCACAAAGGCTATATCAA
1 AATACCATAAAGGCTA-AT-AG
*
27071532 AATACCATAGAGGCTAATAG
1 AATACCATAAAGGCTAATAG
* * *
27071552 AATAGCATAAAGGCCATATCAA
1 AATACCATAAAGGCTA-AT-AG
*
27071574 AATACCATAAAGGCTAATAA
1 AATACCATAAAGGCTAATAG
**
27071594 AATGTCATAAAGGC
1 AATACCATAAAGGC
27071608 CATATCAAAA
Statistics
Matches: 77, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
20 41 0.53
21 7 0.09
22 29 0.38
ACGTcount: A:0.47, C:0.18, G:0.16, T:0.19
Consensus pattern (20 bp):
AATACCATAAAGGCTAATAG
Found at i:27071581 original size:42 final size:42
Alignment explanation
Indices: 27071424--27071620 Score: 227
Period size: 42 Copynumber: 4.7 Consensus size: 42
27071414 AAAGGCTAGT
* * * * *
27071424 AGAATGCCACCCAA-GCCATATTAGAATACCACAGAGACTAAC
1 AGAATGCCA-CAAAGGCCATATCAAAATACCATAGAGGCTAAC
* *
27071466 AGAATGCCACAAAGGCAATATAAAAATACCATAGAGGCTAAC
1 AGAATGCCACAAAGGCCATATCAAAATACCATAGAGGCTAAC
* *
27071508 AGAATGCCACAAAGGCTATATCAAAATACCATAGAGGCTAAT
1 AGAATGCCACAAAGGCCATATCAAAATACCATAGAGGCTAAC
* * *
27071550 AGAATAG-CATAAAGGCCATATCAAAATACCATAAAGGCTAAT
1 AGAAT-GCCACAAAGGCCATATCAAAATACCATAGAGGCTAAC
* * *
27071592 AAAATGTCATAAAGGCCATATCAAAATAC
1 AGAATGCCACAAAGGCCATATCAAAATAC
27071621 GCCATAAAGG
Statistics
Matches: 139, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
41 4 0.03
42 134 0.96
43 1 0.01
ACGTcount: A:0.48, C:0.20, G:0.15, T:0.17
Consensus pattern (42 bp):
AGAATGCCACAAAGGCCATATCAAAATACCATAGAGGCTAAC
Found at i:27071638 original size:24 final size:24
Alignment explanation
Indices: 27071618--27071678 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
27071608 CATATCAAAA
27071618 TACGCCATAAAGGTTAGATCAGAG
1 TACGCCATAAAGGTTAGATCAGAG
*
27071642 TACGCTATAAAGGTTAGATCAGAG
1 TACGCCATAAAGGTTAGATCAGAG
*
27071666 TACACCATAAAGG
1 TACGCCATAAAGG
27071679 ATAGTAGGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.21
Consensus pattern (24 bp):
TACGCCATAAAGGTTAGATCAGAG
Found at i:27074711 original size:25 final size:25
Alignment explanation
Indices: 27074674--27074727 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
27074664 TCTAGTGGCA
27074674 AGGTGGCGACACA-TGTGTGGCAAGG
1 AGGTGGCGACACAGT-TGTGGCAAGG
* *
27074699 AGGTGGCGTCACAGTTTTGGCAAGG
1 AGGTGGCGACACAGTTGTGGCAAGG
27074724 AGGT
1 AGGT
27074728 CAGAGGTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 25 0.96
26 1 0.04
ACGTcount: A:0.22, C:0.15, G:0.43, T:0.20
Consensus pattern (25 bp):
AGGTGGCGACACAGTTGTGGCAAGG
Found at i:27085677 original size:17 final size:17
Alignment explanation
Indices: 27085652--27085694 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
27085642 ATAAATGGAT
*
27085652 CTTTGTAGCTTGCATAC
1 CTTTCTAGCTTGCATAC
27085669 CTTTCTAGCTTGCATAC
1 CTTTCTAGCTTGCATAC
27085686 CTTTCTAGC
1 CTTTCTAGC
27085695 ATCCTTTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.16, C:0.28, G:0.14, T:0.42
Consensus pattern (17 bp):
CTTTCTAGCTTGCATAC
Found at i:27089183 original size:12 final size:13
Alignment explanation
Indices: 27089166--27089194 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
27089156 CTCATACATG
27089166 AATAAATAAA-GC
1 AATAAATAAATGC
27089178 AATAAATAAATGC
1 AATAAATAAATGC
27089191 AATA
1 AATA
27089195 GTTATAGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:27091772 original size:47 final size:47
Alignment explanation
Indices: 27091677--27092436 Score: 1124
Period size: 47 Copynumber: 16.1 Consensus size: 47
27091667 TATACACTTC
*
27091677 CACATCCATCACATTGGCCATTC-GCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTT
* *
27091723 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
27091770 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
27091817 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
27091864 CACATTCATCACATTGGCCATTC-GCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
27091910 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
27091957 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
27092004 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
27092051 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
* *
27092098 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
27092145 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACA-TGTT
27092194 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTT
* *
27092241 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTT
* *
27092288 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTT
* *
27092335 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACA-TGTT
*
27092384 CACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTT
27092431 CACATT
1 CACATT
27092437 TATTCAAATA
Statistics
Matches: 686, Mismatches: 20, Indels: 15
0.95 0.03 0.02
Matches are distributed among these distances:
46 69 0.10
47 527 0.77
49 89 0.13
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
Found at i:27093829 original size:85 final size:85
Alignment explanation
Indices: 27093700--27093878 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
27093690 TATTTTATTG
*
27093700 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
27093765 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
27093785 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
27093850 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
27093870 CCCATGCTC
1 CCCATGCTC
27093879 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:27096425 original size:85 final size:85
Alignment explanation
Indices: 27096296--27096474 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
27096286 TATTTTATTG
*
27096296 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
27096361 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
27096381 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
27096446 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
27096466 CCCATGCTC
1 CCCATGCTC
27096475 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:27099111 original size:20 final size:20
Alignment explanation
Indices: 27099066--27099114 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
27099056 TTTGAATTAA
*
27099066 TTTTTAAATCAAGTTGAAAT
1 TTTTTCAATCAAGTTGAAAT
**
27099086 GATTTCAATCAAGTT-AGAAT
1 TTTTTCAATCAAGTTGA-AAT
27099106 TTTTTCAAT
1 TTTTTCAAT
27099115 TAGTTAAACT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (20 bp):
TTTTTCAATCAAGTTGAAAT
Found at i:27101270 original size:61 final size:61
Alignment explanation
Indices: 27101191--27101313 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
27101181 AATCACTTAG
*
27101191 AACATAGAAAATAGTTATACACACTTAATTCTTACATTTTCACATCAAATTATAAATGCAA
1 AACATAGAAAATACTTATACACACTTAATTCTTACATTTTCACATCAAATTATAAATGCAA
27101252 AACATAGAAAATACTTATACACACTTAATTCTTACATTTTCACATCAAATTATAAATGCAA
1 AACATAGAAAATACTTATACACACTTAATTCTTACATTTTCACATCAAATTATAAATGCAA
27101313 A
1 A
27101314 TAAACATAAC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (61 bp):
AACATAGAAAATACTTATACACACTTAATTCTTACATTTTCACATCAAATTATAAATGCAA
Found at i:27106633 original size:25 final size:25
Alignment explanation
Indices: 27106599--27106651 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
27106589 TATACTTGTC
27106599 TCTCATATCTATTCAAATATTTCAT
1 TCTCATATCTATTCAAATATTTCAT
27106624 TCTCATATCTATTCAAATATTTCAT
1 TCTCATATCTATTCAAATATTTCAT
27106649 TCT
1 TCT
27106652 TACTTTCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.49
Consensus pattern (25 bp):
TCTCATATCTATTCAAATATTTCAT
Found at i:27112543 original size:25 final size:25
Alignment explanation
Indices: 27112514--27112564 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
27112504 ATAGCGGAGT
*
27112514 TTGCCTACAATAATAGCTTCCAGTC
1 TTGCCTACAATAATAGATTCCAGTC
27112539 TTGCCTACAATAATAGATTCCAGTC
1 TTGCCTACAATAATAGATTCCAGTC
27112564 T
1 T
27112565 AACATCCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (25 bp):
TTGCCTACAATAATAGATTCCAGTC
Found at i:27116599 original size:49 final size:50
Alignment explanation
Indices: 27116466--27116647 Score: 246
Period size: 50 Copynumber: 3.7 Consensus size: 50
27116456 CATTTGGGTA
* *
27116466 AAGAGTTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
*
27116516 AAGAGGTCCCATGTAAGACCATGTTTGGGACATGGTGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
* * *
27116566 AAGAGGTCCC-TGTAAGACCATATCTGAGACATGGTGTTAGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
* *
27116615 GAGAGGTCTTCC--GTAAGATCATGTCT-GGACATG
1 AAGAGGTC--CCATGTAAGACCATGTCTGGGACATG
27116648 ACATGGGCAC
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
49 48 0.40
50 69 0.58
51 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
Found at i:27116658 original size:49 final size:49
Alignment explanation
Indices: 27116466--27116706 Score: 236
Period size: 50 Copynumber: 4.9 Consensus size: 49
27116456 CATTTGGGTA
*
27116466 AAGAGTTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCC-TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
27116516 AAGAGGTCCCATGTAAGACCATGTTTGGGACATGGTGTTGGCACCGAGAT
1 AAGAGGTCCC-TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* * * *
27116566 AAGAGGTCCCTGTAAGACCATATCTGAGACATGGTGTTAGCACCGAGAT
1 AAGAGGTCCCTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* * * * *
27116615 GAGAGGTCTTCC-GTAAGATCATGTCT-GGACATGACATGGGCACCGATG-T
1 AAGAGGTC--CCTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-GAT
* ** * * * *
27116664 GAGAACTCTCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 AAGAGGTC-CCTGTAAGACCATGTCTGGGACATGGCGTTGGCA
27116707 GTACAAAAAA
Statistics
Matches: 162, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
48 2 0.01
49 75 0.46
50 83 0.51
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
AAGAGGTCCCTGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Done.