Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3615
Parameters: 2 7 7 80 10 50 1000
Length:  30660

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
696--877
94
1.9
91
79
10
197
38
15
14
31
1.88
998--1188
96
1.9
101
83
11
252
36
16
15
31
1.90
1704--2047
76
4.6
74
82
11
384
33
18
15
32
1.93
2002--2094
47
2.0
47
87
8
136
33
20
16
30
1.94
2164--2790
267
2.3
266
87
10
865
36
19
17
26
1.94
2196--2790
128
4.4
132
88
9
808
36
20
17
25
1.94
2727--2881
67
2.2
68
86
6
206
40
21
15
23
1.91
2765--3002
119
2.0
118
87
7
340
38
22
13
25
1.91
2884--3055
70
2.5
70
85
4
217
32
23
14
29
1.94
11315--11350
12
3.0
12
95
0
63
41
5
25
27
1.77
15670--15704
17
2.1
17
88
0
52
42
0
14
42
1.45
17182--17228
20
2.2
23
85
11
64
46
4
0
48
1.21
17606--17634
13
2.1
14
93
6
51
20
0
0
79
0.74
18285--18460
3
59.3
3
73
11
132
31
5
1
61
1.26
18830--19059
125
1.8
126
82
0
300
30
16
17
36
1.92
23084--23138
25
2.3
23
78
12
58
43
3
16
36
1.65
23194--23268
22
3.3
22
75
10
69
60
5
5
29
1.41
23200--23347
25
5.9
25
68
15
90
57
4
7
30
1.47
23249--23320
27
2.6
28
73
8
67
61
4
6
27
1.41
23694--23732
16
2.4
16
86
0
51
43
28
5
23
1.75
23889--23957
30
2.3
30
97
0
129
15
5
50
27
1.67
24572--24798
86
2.6
86
80
5
244
33
19
15
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24736--24925
102
1.8
103
89
4
303
38
17
15
27
1.90
24836--25191
91
3.9
90
83
6
418
36
18
17
27
1.93
24994--25026
14
2.4
14
94
0
57
63
6
12
18
1.48
24838--25170
182
1.8
178
85
5
472
34
19
18
27
1.95
25103--25701
73
8.2
75
84
7
723
33
20
16
30
1.94
25097--25768
148
4.5
149
86
6
789
33
20
16
30
1.95
25699--26056
99
3.8
96
84
10
427
38
19
17
24
1.93
25878--25914
14
2.8
13
88
8
56
67
5
10
16
1.38
25883--26056
89
2.0
86
88
3
240
37
20
18
24
1.94

Tables:   1

The End!