genome.fa.s2020.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2020
Parameters: 2 7 7 80 10 50 1000
Length:  47854

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2054--2206	26	5.8	25	80	9	146	27	16	28	26	1.97
2054--2206	27	5.8	26	79	7	150	27	16	28	26	1.97
2053--2229	54	3.3	54	77	12	175	26	16	28	28	1.97
4555--4838	108	2.6	104	83	13	337	34	20	21	24	1.97
4555--4842	27	10.8	27	77	16	280	34	19	21	24	1.97
10546--10723	27	6.6	27	79	3	115	28	28	16	26	1.97
10546--10723	54	3.3	55	80	10	204	28	28	16	26	1.97
10567--10722	82	1.9	81	85	3	215	28	28	16	26	1.97
13345--13438	6	15.3	6	71	12	66	48	11	18	21	1.79
13366--13426	31	2.0	31	93	0	104	45	13	21	19	1.84
13368--13438	31	2.3	31	87	0	97	47	12	18	21	1.81
13573--13629	27	2.1	27	83	6	71	36	24	22	15	1.94
13933--14042	27	4.1	27	85	8	127	38	20	20	20	1.94
14266--16529	27	84.2	27	88	1	3236	24	19	20	35	1.96
18555--18648	6	15.3	6	71	12	66	48	11	18	21	1.79
18576--18636	31	2.0	31	93	0	104	45	13	21	19	1.84
18578--18648	31	2.3	31	87	0	97	47	12	18	21	1.81
19144--19253	27	4.1	27	85	8	127	38	20	20	20	1.94
19477--20503	27	38.2	27	88	0	1425	25	19	20	35	1.96
22404--22629	40	5.7	40	88	4	289	26	26	21	25	1.99
24779--24872	6	15.3	6	72	15	68	51	11	18	19	1.76
24800--24860	31	2.0	31	96	0	113	47	13	21	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24802--24872	31	2.3	31	90	0	106	49	12	18	19	1.79
25007--25062	27	2.1	27	86	6	78	37	23	23	16	1.93
25370--25456	27	3.3	26	85	7	104	37	18	21	21	1.94
25691--25749	27	2.2	27	81	0	64	28	18	23	28	1.98
25700--26262	27	20.9	27	89	1	808	25	19	19	34	1.96
30306--30335	6	5.0	6	91	0	51	80	0	3	16	0.85
37755--37838	29	2.9	29	85	1	98	30	30	11	26	1.92
43043--43227	40	4.7	40	79	7	207	26	27	21	24	1.99

Tables:   1

The End!