Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1524
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16686
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Found at i:12349 original size:69 final size:67
Alignment explanation
Indices: 12178--12349 Score: 218
Period size: 67 Copynumber: 2.5 Consensus size: 67
12168 CTTTCCAAGG
* **
12178 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTT
12243 TT
66 TT
* ** * *
12245 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-T
12310 GTTT
65 -TTT
* ** *
12314 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
12350 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
67 55 0.61
68 1 0.01
69 34 0.38
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (67 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTT
TT
Found at i:12676 original size:70 final size:70
Alignment explanation
Indices: 12349--13315 Score: 1403
Period size: 70 Copynumber: 14.3 Consensus size: 70
12339 GAGTTAAGCC
*
12349 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGC--GA-GTGAGTTGAGCCTCAGGACACGC
1 TTTTCAATTTCTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGC
12410 TGAGGTA
64 TGAGGTA
*
12417 ATTTCAATTT-TGTTTTCAAAATCAACTCATATTGCGAGA--TGAGTTGAGCCTCAGGACACGCT
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCT
12479 GAGGTA
65 GAGGTA
*
12485 ATTTCAATTTCTGTTTTCAAAATCAACTCATATTGC--GAGGTGAGTTGAGCCTCAGACACGCTG
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
12548 AGGTA
66 AGGTA
12553 -TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGC
1 TTTTCAATTTCTGTTTTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGC
12617 TGAGGTA
64 TGAGGTA
12624 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
12689 AGGTA
66 AGGTA
12694 -TTTCAATTT-TG-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCT
12756 GAGGTA
65 GAGGTA
12762 -TTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--ACACG-TG
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
12823 AGGTA
66 AGGTA
12828 -TTTCAATTT-T-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-CACGCTG
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
12889 AGGTA
66 AGGTA
12894 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCT
1 TTTTCAATTTCTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCT
12959 GAGGTCAA
65 GAGGT--A
*
12967 TTTTCAATTT-TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTCAATTTCTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGC
13031 TGAGGTA
64 TGAGGTA
13038 -TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT----CACGCT
1 TTTTCAATTTCTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCT
13098 GAGGTA
65 GAGGTA
* * *
13104 TTTTCAATTTC--TTTTCAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-----TCGTTG
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
13162 A-GTA
66 AGGTA
* *
13166 -TTTCAATTTC-----TC-AAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCGGGCACGCTG
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
13223 AGGTA
66 AGGTA
* * *
13228 TTTTCAATTACTG-TTTCAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACATGCTG
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
13292 AGGTA
66 AGGTA
13297 TTTTC-ATTTCTGTTTTCAA
1 TTTTCAATTTCTGTTTTCAA
13316 TTTATGTTTT
Statistics
Matches: 843, Mismatches: 15, Indels: 81
0.90 0.02 0.09
Matches are distributed among these distances:
56 16 0.02
57 17 0.02
58 2 0.00
61 15 0.02
62 6 0.01
63 14 0.02
64 77 0.09
65 10 0.01
66 35 0.04
67 110 0.13
68 106 0.13
69 121 0.14
70 141 0.17
71 87 0.10
72 62 0.07
73 24 0.03
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (70 bp):
TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
AGGTA
Found at i:12768 original size:137 final size:136
Alignment explanation
Indices: 12353--13315 Score: 1383
Period size: 137 Copynumber: 7.1 Consensus size: 136
12343 TAAGCCTTTT
*
12353 AATTTTTGTTTTTCAAAATCAACTCATATTGC--GA-GTGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTG-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGG
12415 TAATTTCAATTTTGTTTTCAAAATCAACTCATATTGCGAGA--TGAGTTGAGCCTCAGGACACGC
64 T-ATTTCAATTTTG-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGC
12478 TGAGGTAATTTC
126 TGAGGT-ATTTC
12490 AATTTCTGTTTTCAAAATCAACTCATATTGC--GAGGTGAGTTGAGCCTCAGACACGCTGAGGTA
1 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTA
12553 TTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCT
66 TTTCAATTT-TG-TTTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCT
12618 GAGGTATTTTC
127 GAGGTA-TTTC
12629 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTA
1 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTA
12694 TTTCAATTTTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
66 TTTCAATTTTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAG
12759 GTATTTC
130 GTATTTC
12766 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--ACACG-TGAGGTA
1 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTA
*
12828 TTTCAATTTTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-CACGCTGAGG
66 TTTCAATTTTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGG
12892 TATTTTC
131 TA-TTTC
12899 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
1 AATTTCTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
*
12964 CAATTTTCAATTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
65 --A-TTTCAA-TTTTGTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACAC
13029 GCTGAGGTATTTC
124 GCTGAGGTATTTC
13042 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT----CACGCTGAGGT
1 AATTTCTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
* * *
13103 ATTTTCAATTTCT-TTTCAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-----TCGTTG
65 A-TTTCAATTT-TGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
13162 A-GTATTTC
128 AGGTATTTC
* *
13170 AATTTC-----TC-AAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTA
1 AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTA
* * *
13228 TTTTCAATTACTGTTTCAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACATGCTGA
66 -TTTCAATT-TTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGA
13293 GGTATTTTC
129 GGTA-TTTC
13302 -ATTTCTGTTTTCAA
1 AATTTCTGTTTTCAA
13316 TTTATGTTTT
Statistics
Matches: 773, Mismatches: 11, Indels: 84
0.89 0.01 0.10
Matches are distributed among these distances:
120 17 0.02
121 17 0.02
123 2 0.00
124 22 0.03
125 38 0.05
128 13 0.02
129 5 0.01
130 4 0.01
131 8 0.01
132 16 0.02
133 18 0.02
134 96 0.12
135 50 0.06
136 59 0.08
137 130 0.17
138 37 0.05
139 64 0.08
140 22 0.03
141 50 0.06
142 38 0.05
143 55 0.07
144 12 0.02
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (136 bp):
AATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTA
TTTCAATTTTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGG
TATTTC
Found at i:13032 original size:276 final size:270
Alignment explanation
Indices: 12349--13315 Score: 1433
Period size: 276 Copynumber: 3.6 Consensus size: 270
12339 GAGTTAAGCC
*
12349 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGC-GA-GTGAGTTGAGCCTCAGGACACGCT
1 TTTTCAATTTCTG-TTTTCAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCA-GACACGCT
12411 GAGGTAATTTCAA-TTTTGTTTTCAAAATCAACTCATATTGCGAGA--TGAGTTGAGCCTCAGGA
64 GAGGT-ATTTCAATTTTTG-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
12473 CACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATCAACTCATATTGC--GAGGTGAGTTGAGCC
127 CACGCTGAGGT-ATTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
12536 TCAGACACGCTGAGGTATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGT
191 TC--ACACG-TGAGGTATTTCAATTT-T-TTTTC--AAAATCAACTCATATTGCGAGAGGTGAGT
12601 TGAGCCTCAGACACGCTGAGGTA
249 TGAGCCTCAG-CACGCTGAGGTA
12624 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTG
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGACACGCTG
12689 AGGTATTTCAA-TTTTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
65 AGGTATTTCAATTTTTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
12753 GCTGAGGTATTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAC
130 GCTGAGGTATTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAC
12818 ACGTGAGGTATTTCAATTTTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGC
195 ACGTGAGGTATTTCAATTTTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGC
12883 ACGCTGAGGTA
260 ACGCTGAGGTA
12894 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCT
1 TTTTCAATTTCTGTTTTC-AAAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCAGACACGCT
*
12959 GAGGTCAATTTTCAATTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
64 GAGGT--A-TTTCAATTTTTGTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
13024 GACACGCTGAGGTATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
125 GACACGCTGAGGTATTTCAATTTCTGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * *
13089 CCTCACGC-TGAGGTATTTTCAATTTCTTTTCAAAATCAACTCATATTGCGAAAGGTGAGTTGAG
189 CCTCACACGTGAGGTA-TTTCAATTTTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
13153 CCT----TCGTTGA-GTA
253 CCTCAGCACGCTGAGGTA
* *
13166 -TTTCAATTTC-----TC-AAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCGGGCACGCTGA
1 TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCAGACACGCTGA
** * *
13224 GGTATTTTCAATTACTGTTTCAAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACAT
66 GGTA-TTTCAATTTTTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
13288 GCTGAGGTATTTTC-ATTTCTGTTTTCAA
130 GCTGAGGTA-TTTCAATTTCTGTTTTCAA
13316 TTTATGTTTT
Statistics
Matches: 661, Mismatches: 14, Indels: 51
0.91 0.02 0.07
Matches are distributed among these distances:
258 2 0.00
259 25 0.04
260 41 0.06
261 15 0.02
263 30 0.05
264 17 0.03
266 2 0.00
270 30 0.05
271 100 0.15
272 3 0.00
273 11 0.02
274 7 0.01
275 77 0.12
276 137 0.21
277 132 0.20
278 32 0.05
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (270 bp):
TTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCAGACACGCTGA
GGTATTTCAATTTTTGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTATTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACA
CGTGAGGTATTTCAATTTTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCA
CGCTGAGGTA
Found at i:13388 original size:277 final size:269
Alignment explanation
Indices: 12178--13315 Score: 1365
Period size: 277 Copynumber: 4.3 Consensus size: 269
12168 CTTTCCAAGG
* * * * *
12178 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTAT-TTTTAA-TT-
1 AAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTCAATTTA
* * * *
12240 T-TTTT-AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
66 TGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--AGCACGCTGAGGTATTTTC
* * * ** * * *
12303 AGTTTATGTTT-TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT----TTTA---ATTTT-
129 AATTTCT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACGCTGAGGTATTTTC
** *
12359 TGTTT-TTCAAAATCAACTCATATTGC--GA-GTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
193 AATTTCTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAGGTATTT
12420 TCAATTTTGTTTTC
257 TCAATTTTG-TTTC
* *
12434 AAAATCAACTCATATTGCGAGA--TGAGTTGAGCCTCAGGACACGCTGAGGTA-ATTTCAATTTC
1 AAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTCAATTTA
12496 TGTTTTCAAAATCAACTCATATTGC--GAGGTGAGTTGAGCCTCAGACACGCTGAGGTA-TTTCA
66 TGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-CACGCTGAGGTATTTTCA
12558 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
130 ATTTC--TTTTC--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT----CACGCTGAGGT
12623 ATTTTCAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCT
187 ATTTTCAATTTC----TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCT
12688 GAGGTA-TTTCAATTTTGTTTC
248 GAGGTATTTTCAATTTTGTTTC
* *
12709 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG--TATTTCAATTTC
1 AAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTCAATTTA
12772 TGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-CACG-TGAGGTA-TTTCAA
66 TGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACGCTGAGGTATTTTCAA
*
12834 TTTTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACGCTGAGGTATTTTC
131 TTTCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT---CACGCTGAGGTATTTTC
12899 AATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
193 AATTTC----TTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGT
*
12964 CAATTTTCAATTTTTTTTTC
253 --ATTTTCAA-TTTTGTTTC
12984 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG--TATTTCAATTT
1 AAAAA-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTCAATTT
*
13047 CTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT---CACGCTGAGGTATTTTC
65 ATGTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACGCTGAGGTATTTTC
* * *
13109 AATTTCTTTTCAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT-TCGTTGA-GTA-TTTCA
129 AATTTCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACGCTGAGGTATTTTCA
* *
13171 ATTTC-TC-AAATCAACTCATATTGC-AGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTC
194 ATTTCTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTC
*
13233 AATTACTGTTTC
259 AATT-TTGTTTC
* *
13245 AAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACATGCTGAGGTAT-TTTC-ATTTC
1 AAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTCAATTTA
13307 TGTTTTCAA
66 TGTTTTCAA
13316 TTTATGTTTT
Statistics
Matches: 802, Mismatches: 32, Indels: 94
0.86 0.03 0.10
Matches are distributed among these distances:
254 40 0.05
255 16 0.02
256 40 0.05
257 4 0.00
258 52 0.06
259 23 0.03
260 39 0.05
261 19 0.02
263 30 0.04
264 17 0.02
266 4 0.00
269 5 0.01
270 33 0.04
271 97 0.12
272 3 0.00
273 11 0.01
274 6 0.01
275 79 0.10
276 123 0.15
277 128 0.16
278 33 0.04
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (269 bp):
AAAAACAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATATTTCAATTTA
TGTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACGCTGAGGTATTTTCAA
TTTCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCACGCTGAGGTATTTTCAAT
TTCTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGGTATTTTCAA
TTTTGTTTC
Done.