Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold673
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24596
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Found at i:1281 original size:26 final size:26
Alignment explanation
Indices: 1246--1296 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1236 AATGTGAAAG
*
1246 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
1272 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
1297 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:1308 original size:103 final size:104
Alignment explanation
Indices: 1168--1433 Score: 428
Period size: 103 Copynumber: 2.6 Consensus size: 104
1158 TGTATATAAA
** * * *
1168 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
1233 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
1271 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
1335 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
1375 AGGGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
1434 ATAACGGTTA
Statistics
Matches: 150, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
103 90 0.60
104 60 0.40
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:6729 original size:608 final size:608
Alignment explanation
Indices: 2633--10116 Score: 14102
Period size: 607 Copynumber: 12.4 Consensus size: 608
2623 AGGGGTGTTA
* *
2633 CAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACC-TAAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
** * *
2697 AGAGGATCCATATCAGAGATTATTGAAATTGGAATTCCATGCAGTCTTACAATATTAGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
* * * *
2762 GAGCTTCACTAACTTTTGCAGAGAGTAGTCTATTTGAAAAGGAGTAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
*
2827 ACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
*
2892 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAAACGATCC
261 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
* *
2957 CAAATTAGTCTAACATTATCCTCAGGCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCA-C
326 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
* *
3021 CAACTCAGTCAAATATAACAGAGTAAGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
391 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
*
3086 AGATGCTAGATTGGAAACTGTTATTGTAGGCAAACTCAACTAACGGTAAAAAATCCTCCCAACTA
456 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
3151 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
521 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
3216 A-CATCGGTCTGAGGATGGAACG
586 ACCATCGGTCTGAGGATGGAACG
*
3238 CAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
3303 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCT-AGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
3367 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
3432 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGT-CCCCATAGAGTACT
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
* *
3496 TGATATCTCTGATTTTGAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGATGAT-C
261 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
*
3560 CGAA-TATGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
326 CAAATTA-GTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
3624 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
390 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
*
3689 TAGATGCTAGATTGGAAACTATTATTGTAGGCGAACTCAACTAACGG----------T---AACT
455 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
* *
3741 ACCTCAGAAATAAATCACATAACTTCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
520 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
3806 GACCATCGGTCTGAGGATGGAACG
585 GACCATCGGTCTGAGGATGGAACG
*
3830 CAGTACTGAAGTTCAATCTCGAACCTAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
3895 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
3960 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
4025 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
4090 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
261 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
4155 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
326 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
4220 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
391 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
4285 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
456 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
4350 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
521 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
4415 ACCATCGGTCTGAGGATGGAACG
586 ACCATCGGTCTGAGGATGGAACG
4438 CAGTACTGAAG-TCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
4502 AGAGGATCCATATCAGAGATTATTGAAATTGGAA-CCCATGCAGTCTTACAATCTCAGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
4566 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
4631 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
4696 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
261 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
4761 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
326 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
4826 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
391 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
4891 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
456 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
* * * *
4956 TCTCAGAAAGAAATCACATAGCTCCAAATCATATCTTCTAGTATATGAATCACCCTCTCAAATAG
521 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
5021 ACCATCGGTCTGAGGATGGAACG
586 ACCATCGGTCTGAGGATGGAACG
5044 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
5109 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
* *
5174 GAGCTTCACTAACTTTTGCAGTGAGTAGTCCATCTGAACAAGAATAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
* *
5239 ACCGAACCGTAGAACC-TTTCCCACGGAGTTACATTAAGAAATACAAAGTCCCCCATAGAGTACT
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
5303 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
261 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
5368 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
326 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
5433 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
391 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
5498 AGATGCTAGATTGGAAACAT-TTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
456 AGATGCTAGATTGGAAAC-TGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
5562 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
520 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
5627 GACCATCGGTCTGAGGATGGAACG
585 GACCATCGGTCTGAGGATGGAACG
5651 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
5716 AGAGGATCCATATCAGAGATTATTGAAATTGGAA-CCCATGCAGTCTTACAATCTCAGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
5780 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
5845 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
5910 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
261 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
5975 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
326 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
6040 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
391 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
6105 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCT-CCAACTA
456 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
6169 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
521 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
6234 ACCATCGGTCTGAGGATGGAACG
586 ACCATCGGTCTGAGGATGGAACG
6257 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
6322 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
6387 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
6452 ACCGAACCGTAGAACCTTTTTCCACGGA-TTACCTTTTAAGAAATACAAAGTCCCCCATAGAGTA
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACC--TTAAGAAATACAAAGTCCCCCATAGAGTA
6516 CTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGAT
259 CTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGAT
6581 CCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCA
324 CCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCA
6646 CCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCAT
389 CCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCAT
6711 CTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAAC
454 CTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAAC
6776 TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
519 TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
6841 TGACCATCGGTCTGAGGATGGAACG
584 TGACCATCGGTCTGAGGATGGAACG
6866 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
6931 AGAGGATCCATATCAGAGATTATTGAAATTGGAA-CCCATGCAGTCTTACAATCTCAGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
6995 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
7060 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGT-CCCCATAGAGTACT
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
7124 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
261 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
7189 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
326 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
7254 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
391 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
7319 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
456 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
7384 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
521 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
7449 ACCATCGGTCTGAGGATGGAACG
586 ACCATCGGTCTGAGGATGGAACG
7472 CAGTACTGAAG-TCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
7536 AGAGGATCCATATCAGAGATTATTGAAATTGGAA-CCCATGCAGTCTTACAATCTCAGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
*
7600 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAAAAGGAATAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
7665 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGT-CCCCATAGAGTACT
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
7729 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGAACGCCTTCAGACGATC
261 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAG-ACGCCTTCAGACGATC
7794 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
325 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
7859 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
390 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
7924 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAAT-C-CCCAACT
455 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
7987 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
520 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
8052 GACCATCGGTCTGAGGATGGAACG
585 GACCATCGGTCTGAGGATGGAACG
*
8076 CAGTACTGAAG-TCTAATCTCGAACCTAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAA
1 CAGTACTGAAGTTC-AATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAA
8140 GAGAGGATCCATATCAGAGATTATTGAAATTGGAA-CCCATGCAGTCTTACAATCTCAGAAATGT
65 GAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGT
8204 AGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAA-AAAATGAGCGGACTTGGTC
130 AGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTC
8268 AACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
195 AACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
8333 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
260 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
8398 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
325 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
8463 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
390 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
8528 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCT-CCACAC
455 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCA-AC
8592 TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
519 TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
8657 TGACCATCGGTCTGAGGATGGAACG
584 TGACCATCGGTCTGAGGATGGAACG
*
8682 CAGTACTGAAG-TCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTAGGA
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGT-GAA
8746 GAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGT
65 GAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGT
8811 AGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTC
130 AGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTC
8876 AACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
195 AACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
8941 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
260 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
9006 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
325 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
9071 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
390 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
9136 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCT-CCACAC
455 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCA-AC
9200 TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
519 TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
9265 TGACCATCGGTCTGAGGATGGAACG
584 TGACCATCGGTCTGAGGATGGAACG
9290 CAGTACTGAAG-TCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
1 CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
9354 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
66 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
9419 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
131 GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
9484 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
196 ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
9549 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
261 TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
*
9614 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACTCGTCGCTCACC
326 CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
9679 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
391 CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
*
9744 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGATAAAAAATCCTCCCAACTA
456 AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
*
9809 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAATATATGAATCACCCTCTCAAATTG
521 CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT-
9874 GACCA---GTCTGAGGATGGAACG
585 GACCATCGGTCTGAGGATGGAACG
* *
9895 CAGTACTGAAGGTTCAATCTCGAACCTAGAGACTTGTGAAGTTTCTTCTAGAACCGTGAAAGTGA
1 CAGTACTGAA-GTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTG-AAGTGA
* * *
9960 AGAGAGGATCCATATCAGAGATTATTTAAATTGGAACGCCATGCAGTCTTACAATCTCAAAAATG
64 AGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATG
* * * *
10025 TAGAGCTTCACTAACTTTTGCAGATAGTTGTCCATCTGAACAGGAATAAAATGGGCAGACTTGGT
129 TAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGT
**
10090 CAACCGAACTATAGAACCTTTTTCCAC
194 CAACCGAACCGTAGAACCTTTTTCCAC
10117 TTGATATCTC
Statistics
Matches: 6768, Mismatches: 66, Indels: 87
0.98 0.01 0.01
Matches are distributed among these distances:
591 69 0.01
592 139 0.02
593 124 0.02
594 76 0.01
595 172 0.03
596 2 0.00
602 2 0.00
603 58 0.01
604 562 0.08
605 763 0.11
606 1602 0.24
607 1727 0.26
608 1273 0.19
609 199 0.03
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (608 bp):
CAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAG
AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
GAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTCA
ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACT
TGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCC
CAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACC
CAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCT
AGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTA
CCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTG
ACCATCGGTCTGAGGATGGAACG
Found at i:10629 original size:569 final size:574
Alignment explanation
Indices: 9550--13016 Score: 5317
Period size: 569 Copynumber: 5.9 Consensus size: 574
9540 TAGAGTACTT
9550 GATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCC
1 GATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCC
*
9615 AAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACTCGTCGCTCACCC
66 AAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACCC
9680 AACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTA
131 AACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTA
*
9745 GATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGATAAAAAATCCTCCCAACTAC
196 GATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTAC
*
9810 CTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAATATATGAATCACCCTCTCAAATTGG
261 CTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT-G
* * *
9875 ACCA---GTCTGAGGATGGAACGCAGTACTGAAGGTTCAATCTCGAACCTAGAGACTTGTGAAGT
325 ACCATCGGTCTGAGGATGGAACGCAGTACTGAA-GTCCAATCTCGAACCCAGAGCCTTGTGAAGT
* *
9937 TTCTTCTAGAACCGTGAAAGTGAAGAGAGGATCCATATCAGAGATTATTTAAATTGGAACGCCAT
389 TTCTTCTAGAACCGTG-AAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCAT
* * *
10002 GCAGTCTTACAATCTCAAAAATGTAGAGCTTCACTAACTTTTGCAGATAGTTGTCCATCTGAACA
453 GCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACA
* * **
10067 GGAATAAAATGGGCAGACTTGGTCAACCGAACTATAGAACCTTTTT-CC-AC-T-T-
518 GGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTACCAACATCTA
*
10119 GATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCAC
1 GATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCC
*
10184 AAATTAGTCTAACATTATCTTCAGTCTCGGAAATCAACTCAGGACCCAAAACCCGTCGCTCACCC
66 AAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACCC
10249 AACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTA
131 AACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTA
* *
10314 GATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGATAAAAAATCCTCCCAACTCC
196 GATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTAC
*
10379 CTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAATATATGAATCACCCTCTCAAATTGA
261 CTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGA
* * * * *
10444 CCATCGGTCTAAGGATGGCACGCAGTACTGAAGTTCAATCTCAAACCCAAAGCCTTGTGAAGTTT
326 CCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGTTT
* *
10509 CTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTTAAATTGGAACGCCATGCA
391 CTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCA
*
10574 GTCTTACAATCTCAAAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGA
456 GTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGA
* **
10639 ATAAAATGGGCGGACTTGGTCAACCGAACTATAGAACCTTTTT-CC-AC-T-T-
521 ATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTACCAACATCTA
** * *
10688 GATATCTCTGATTTTCATTTTTGCATAAGACTTCTATCTATAAGAAGACGCCTTCAGACGATCAC
1 GATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCC
*
10753 AAATTAGTCTAACAATATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACCC
66 AAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACCC
*
10818 AACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTG
131 AACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTA
* * *
10883 GATGCTTGATTGGAAACTGTTATTGTAGGTGAACTCAACTAACGGTAAAAAATCCTCTCAACTAC
196 GATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTAC
10948 CTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGA
261 CTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGA
*
11013 CCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCATGTGAAGTTT
326 CCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGTTT
** *
11078 CTTCTAGAAATGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTAGAACCCCATGCA
391 CTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCA
11143 GTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGA
456 GTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGA
11208 ATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAAT
521 ATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACC--TTT--------TTACC-------A-
11273 ACAAAGTCCCCCATAGA
568 AC--A-T----C-T--A
11290 GTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGAC
1 G------ATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGAC
*
11355 GATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAATCCGTCGC
60 GATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGC
11420 TCACCCAACTCAGTCTAATATAACAGAGTATGACACTT-TGACCATATAGAGCCTCGTAAGGTGC
125 TCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGC
*
11484 CATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGT-AAAAATCCTTCC
190 CATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCC
11548 AACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCA
255 AACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCA
*
11613 AATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTG
320 AATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTG
11678 AAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCC
385 AAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCC
11743 CATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGA
450 CATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGA
11808 ACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTA
515 ACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACC--TTT--------TTACC---
11873 AGAAATACAAAGTCCCCCATAGA
567 ----A-AC--A-T----C-T--A
11896 GTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGAC
1 G------ATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGAC
*
11961 GATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAAATCCGGTC
60 GATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCC-AAAA-CCCGTC
12026 GCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGT
123 GCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGT
12091 GCCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTC
188 GCCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTC
*
12156 CTAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCT
253 CCAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCT
12221 CAAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTG
318 CAAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTG
12286 TGAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAAC
383 TGAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAAC
12351 CCCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCT
448 CCCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCT
12416 GAACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCT
513 GAACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACC--TTT--------TTACC-
12481 TAAGAAATACAAAGTCCCCCACAGAGTA
567 ------A-AC--A-T------C----TA
* *
12509 CTTGATATCTCTGATTTTCTGATTTGCATAAGACTTCTATCTATCAGAAGATGCCTTCAGACGAT
1 ---GATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGAT
12574 CCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCA
63 CCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCA
* *
12639 CCCAACTTAGTGTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCAT
128 CCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCAT
* *
12704 CTAGATACTGGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAAC
193 CTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAAC
* *
12769 TCCCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACTCTCTCAAAT
258 TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
* *
12834 TGACCATCGGTCTGAGGATGGAATGCAGTAGTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAG
323 TGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAG
* *
12899 TTTCTTCTAGCACCGTGTAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCAT
388 TTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCAT
12964 GCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAG
453 GCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAG
13017 CTCTGATACC
Statistics
Matches: 2767, Mismatches: 77, Indels: 69
0.95 0.03 0.02
Matches are distributed among these distances:
568 5 0.00
569 1012 0.37
570 43 0.02
571 27 0.01
579 2 0.00
580 2 0.00
589 2 0.00
593 1 0.00
599 1 0.00
602 1 0.00
606 471 0.17
607 79 0.03
608 576 0.21
609 82 0.03
610 456 0.16
612 4 0.00
613 1 0.00
615 1 0.00
616 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (574 bp):
GATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCC
AAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACCC
AACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTA
GATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTAC
CTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGA
CCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGTTT
CTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCA
GTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGA
ATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTACCAACATCTA
Found at i:11838 original size:606 final size:607
Alignment explanation
Indices: 10684--13016 Score: 4346
Period size: 608 Copynumber: 3.8 Consensus size: 607
10674 ACCTTTTTCC
** *
10684 ACTTGATATCTCTGATTTTCATTTTTGCATAAGACTTCTATCTATAAGAAGACGCCTTCAGACGA
1 ACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGA
* *
10749 TCACAAATTAGTCTAACAATATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTC
66 TCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTC
10814 ACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCA
131 ACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCA
* * *
10879 TCTGGATGCTTGATTGGAAACTGTTATTGTAGGTGAACTCAACTAACGGTAAAAAATCCTCTCAA
196 TCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTC-CAA
10944 CTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAA
260 CTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAA
*
11009 TTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCATGTGAA
325 TTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAA
** *
11074 GTTTCTTCTAGAAATGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTAGAACCCCA
390 GTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCA
11139 TGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAAC
455 TGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAAC
11204 AGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAG
520 AGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAG
11269 AAATACAAAGTCCCCCATAGAGT
585 AAATACAAAGTCCCCCATAGAGT
11292 ACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGA
1 ACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGA
*
11357 TCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAATCCGTCGCTC
66 TCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTC
11422 ACCCAACTCAGTCTAATATAACAGAGTATGACACTT-TGACCATATAGAGCCTCGTAAGGTGCCA
131 ACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCA
11486 TCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGT-AAAAATCCTTCCAA
196 TCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCC-TCCAA
11550 CTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAA
260 CTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAA
*
11615 TTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAA
325 TTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAA
11680 GTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCA
390 GTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCA
11745 TGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAAC
455 TGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAAC
11810 AGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAG
520 AGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAG
11875 AAATACAAAGTCCCCCATAGAGT
585 AAATACAAAGTCCCCCATAGAGT
11898 ACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGA
1 ACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGA
*
11963 TCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAAATCCGGTCGC
66 TCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCC-AAAA-CCCGTCGC
12028 TCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGC
129 TCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGC
12093 CATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCT
194 CATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC-
12158 AACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCA
258 AACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCA
12223 AATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTG
323 AATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTG
12288 AAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCC
388 AAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCC
12353 CATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGA
453 CATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGA
12418 ACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTA
518 ACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTA
*
12483 AGAAATACAAAGTCCCCCACAGAGT
583 AGAAATACAAAGTCCCCCATAGAGT
* *
12508 ACTTGATATCTCTGATTTTCTGATTTGCATAAGACTTCTATCTATCAGAAGATGCCTTCAGACGA
1 ACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGA
12573 TCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTC
66 TCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTC
* *
12638 ACCCAACTTAGTGTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCA
131 ACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCA
* *
12703 TCTAGATACTGGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAA
196 TCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCT-CCAA
* *
12768 CTCCCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACTCTCTCAAA
260 CTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAA
* *
12833 TTGACCATCGGTCTGAGGATGGAATGCAGTAGTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAA
325 TTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAA
* *
12898 GTTTCTTCTAGCACCGTGTAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCA
390 GTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCA
12963 TGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAG
455 TGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAG
13017 CTCTGATACC
Statistics
Matches: 1687, Mismatches: 31, Indels: 14
0.97 0.02 0.01
Matches are distributed among these distances:
606 470 0.28
607 81 0.05
608 579 0.34
609 87 0.05
610 470 0.28
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (607 bp):
ACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGA
TCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTC
ACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCA
TCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCAAC
TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
TGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAG
TTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCAT
GCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACA
GGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGA
AATACAAAGTCCCCCATAGAGT
Found at i:14562 original size:37 final size:39
Alignment explanation
Indices: 14405--14623 Score: 241
Period size: 39 Copynumber: 5.6 Consensus size: 39
14395 GCTACTCGTT
* **
14405 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGTAACTCGCA
* *
14445 CAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATTAGTAACTCGCA
*
14484 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGTAACTCGCA
* *
14523 CAAATGCCTTCGGG-CTTAG-CCGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGAATTAGTAACTCGCA
* * * * *
14560 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGAAT-TAGTAAC-TCGCA
14601 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
14624 GACATCATTC
Statistics
Matches: 158, Mismatches: 14, Indels: 14
0.85 0.08 0.08
Matches are distributed among these distances:
36 2 0.01
37 26 0.16
38 14 0.09
39 64 0.41
40 42 0.27
41 10 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTAGTAACTCGCA
Found at i:22416 original size:39 final size:40
Alignment explanation
Indices: 22371--22501 Score: 180
Period size: 39 Copynumber: 3.3 Consensus size: 40
22361 GCTACTCGTT
*
22371 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
22411 C-AATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
22450 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
22489 CAAATGCCTTCGG
1 CAAATGCCTTCGG
22502 CTTATTAGTA
Statistics
Matches: 82, Mismatches: 5, Indels: 9
0.85 0.05 0.09
Matches are distributed among these distances:
39 67 0.82
40 15 0.18
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:22511 original size:30 final size:30
Alignment explanation
Indices: 22475--22531 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
22465 TTAGCCCGGA
22475 ATTAGTATCTCGCACAAATGCCTTCGGCTT
1 ATTAGTATCTCGCACAAATGCCTTCGGCTT
22505 ATTAGTATCTCGCACAAATGCCTTCGG
1 ATTAGTATCTCGCACAAATGCCTTCGG
22532 AGTCCGGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (30 bp):
ATTAGTATCTCGCACAAATGCCTTCGGCTT
Found at i:24213 original size:26 final size:25
Alignment explanation
Indices: 24184--24241 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
24174 ATAATCAAAT
*
24184 TAATTAATGAT-TAGATTACATCATAA
1 TAATTAAT-ATGTAGAGTACAT-ATAA
* *
24210 TAATAAATATGTATAGTACATATAA
1 TAATTAATATGTAGAGTACATATAA
24235 TAATTAA
1 TAATTAA
24242 ATTATGTGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 12 0.44
26 15 0.56
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (25 bp):
TAATTAATATGTAGAGTACATATAA
Found at i:24339 original size:1 final size:1
Alignment explanation
Indices: 24335--24460 Score: 243
Period size: 1 Copynumber: 126.0 Consensus size: 1
24325 GATTAAAAAA
*
24335 TTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
24400 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
24461 GCGGGCCAAT
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
1 123 1.00
ACGTcount: A:0.00, C:0.00, G:0.01, T:0.99
Consensus pattern (1 bp):
T
Done.