Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2218
Parameters: 2 7 7 80 10 50 1000
Length:  27916

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1482--1515
17
1.9
17
88
5
50
35
23
11
29
1.90
5471--5693
39
5.7
40
82
8
242
25
21
27
25
1.99
5471--5726
118
2.2
119
79
6
263
26
21
27
24
1.99
5551--5726
79
2.3
79
82
5
198
25
21
28
24
1.99
9756--9830
31
2.5
31
91
2
116
29
24
16
30
1.96
9854--9945
42
2.2
42
92
0
148
34
21
14
29
1.93
10090--10263
26
6.8
26
86
2
210
28
22
21
27
1.99
10113--10263
26
5.9
26
88
2
216
29
23
21
26
1.99
10090--10263
52
3.4
52
89
3
264
28
22
21
27
1.99
11064--11140
27
2.9
26
71
19
68
22
16
18
42
1.89
11158--11394
27
8.7
27
77
4
145
30
8
20
40
1.82
11187--11394
54
3.8
53
81
6
195
29
7
20
42
1.78
11245--11394
81
1.9
81
87
5
223
28
6
21
44
1.77
11271--11421
27
5.7
26
76
14
121
27
8
20
43
1.81
11425--11621
27
7.3
27
88
0
259
38
6
25
30
1.80
11425--11607
54
3.4
54
92
0
285
38
4
25
31
1.77
15949--16125
40
4.5
40
85
6
227
23
22
28
25
1.99
15949--16125
79
2.2
78
86
7
241
23
22
28
25
1.99
16352--16393
22
1.9
22
85
9
59
33
9
14
42
1.78
23956--24132
40
4.4
40
81
4
207
24
21
27
27
1.99
24358--24399
22
1.9
22
85
9
59
33
9
14
42
1.78

Tables:   1

The End!