Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3379
Parameters: 2 7 7 80 10 50 1000
Length:  28857

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1647--1693
20
2.3
20
81
0
58
23
12
34
29
1.92
3348--3453
48
2.2
48
85
9
137
14
24
1
59
1.45
7556--7618
33
1.9
33
84
12
85
12
26
6
53
1.62
7621--7672
14
3.8
13
77
10
50
5
17
1
75
1.10
7615--7671
21
2.7
21
75
0
60
8
15
1
73
1.16
7615--7672
27
2.1
27
87
6
82
8
17
1
72
1.18
7635--7754
12
10.0
12
69
19
63
8
18
3
70
1.27
7678--7736
18
3.3
18
80
0
73
5
16
6
71
1.26
7633--7740
6
17.7
6
67
7
65
6
18
3
71
1.23
8599--8637
12
3.2
12
78
7
51
15
7
2
74
1.15
8556--8620
30
2.2
30
83
10
80
4
15
4
75
1.13
8600--8664
14
4.5
14
73
17
53
18
7
1
72
1.17
9981--10027
11
4.3
11
81
10
60
6
10
2
80
0.96
9981--10043
22
2.7
22
83
14
74
6
14
3
76
1.11
11564--11610
20
2.3
20
81
0
58
23
12
34
29
1.92
13233--13267
10
3.5
10
92
0
52
37
22
25
14
1.92
13230--13277
20
2.4
20
75
0
60
31
18
29
20
1.97
16424--16453
13
2.3
13
100
0
60
36
6
13
43
1.70
17941--17993
23
2.4
22
76
20
56
9
18
1
69
1.25
22752--22791
14
2.8
14
84
3
53
75
7
15
2
1.14
24503--24537
18
1.9
18
88
0
52
25
8
11
54
1.64
25363--25402
19
2.1
19
85
0
53
25
35
17
22
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28239--28335
30
3.2
30
76
2
97
28
26
14
29
1.95

Tables:   1

The End!