Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1617
Parameters: 2 7 7 80 10 50 1000
Length:  52485

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
625--661
18
2.2
18
85
9
51
18
5
8
67
1.36
4688--4870
66
2.8
64
81
8
210
24
30
16
28
1.97
5273--5308
19
1.9
19
88
5
56
44
11
0
44
1.39
5600--5660
30
2.0
30
84
6
79
29
22
9
37
1.87
14703--14731
3
9.7
3
100
0
58
68
31
0
0
0.89
18052--18125
31
2.4
31
84
13
100
66
1
2
29
1.14
22960--23019
28
2.1
29
81
3
68
40
33
6
20
1.78
22272--23396
494
2.3
494
97
0
2106
42
15
7
35
1.74
23874--23899
12
2.2
12
100
0
52
53
30
7
7
1.57
26523--26595
36
2.0
36
100
0
146
38
16
8
36
1.79
27184--27399
46
4.6
46
77
7
195
23
30
18
26
1.98
27228--27402
94
1.9
92
86
2
251
22
30
20
26
1.98
34196--34324
50
2.6
50
82
10
158
25
30
19
24
1.98
34337--34507
46
3.7
46
78
6
191
22
30
18
27
1.97
34336--34510
94
1.9
92
87
2
260
22
30
18
27
1.98
38589--38633
23
2.0
22
86
4
63
53
33
2
11
1.49
43378--43585
39
5.3
40
89
4
280
25
21
28
25
1.99
43378--43585
79
2.6
79
87
3
276
25
21
28
25
1.99
43355--43620
79
3.4
79
83
4
227
26
20
27
24
1.99
43355--43620
118
2.2
118
79
7
297
26
20
27
24
1.99
50678--50890
40
5.3
40
87
5
261
27
27
20
23
1.99

Tables:   1

The End!