Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1278
Parameters: 2 7 7 80 10 50 1000
Length:  43137

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2881--3267
40
9.7
40
90
1
548
24
28
22
24
2.00
2868--3263
159
2.5
160
87
2
555
25
28
22
24
2.00
5494--5999
49
10.6
49
91
2
775
29
28
8
33
1.87
5505--5999
194
2.6
193
92
2
804
29
28
8
32
1.87
5494--5999
145
3.5
145
88
3
745
29
28
8
33
1.87
13248--13417
59
2.9
59
75
9
175
40
12
17
29
1.86
19840--19945
30
3.5
30
93
0
176
26
26
22
24
2.00
23106--23149
22
2.1
21
84
16
56
61
0
2
36
1.09
23277--23340
26
2.4
28
81
7
78
45
1
3
50
1.27
23277--23342
27
2.5
26
82
5
78
43
1
3
51
1.26
23485--23523
21
1.9
21
94
5
71
51
0
0
48
1.00
23485--23545
23
2.8
22
81
13
65
44
0
0
55
0.99
23513--23553
18
2.4
16
88
12
55
36
0
0
63
0.95
23880--23938
18
3.3
17
76
9
64
67
3
3
25
1.21
23880--23952
36
2.0
36
84
10
96
68
4
4
23
1.24
23970--24000
16
1.9
16
100
0
62
83
0
6
9
0.79
24944--24998
20
2.8
19
75
8
56
41
1
1
54
1.21
28439--28781
49
7.1
49
89
2
505
32
9
30
27
1.88
28439--28781
145
2.4
145
88
1
506
32
9
30
27
1.88
28900--28978
37
2.1
37
90
0
122
24
18
31
25
1.98
33132--33313
40
4.6
40
92
2
296
23
23
26
27
2.00
41304--41484
40
4.6
40
90
3
287
23
22
26
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41304--41484
79
2.3
79
92
3
294
23
22
26
27
1.99

Tables:   1

The End!