Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2741
Parameters: 2 7 7 80 10 50 1000
Length:  43045

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
337--379
20
2.2
20
82
0
50
44
2
2
51
1.27
1248--1414
45
3.7
45
76
17
177
28
29
20
21
1.98
1253--1418
92
1.8
89
92
3
278
27
30
21
21
1.98
6548--6645
27
3.5
28
90
2
135
26
13
28
31
1.94
6576--6658
27
3.0
27
87
5
96
30
12
25
32
1.92
6548--6659
28
4.0
27
83
6
98
28
12
25
33
1.92
9658--9861
40
5.1
40
82
8
238
24
21
27
25
1.99
9658--9840
79
2.3
81
84
7
232
24
21
27
26
1.99
9711--9875
79
2.1
79
84
6
210
25
21
27
25
1.99
16882--17065
40
4.7
40
80
9
191
23
21
27
26
1.99
16882--17060
79
2.3
79
81
8
204
24
21
27
25
1.99
16934--17088
79
2.0
79
81
7
181
25
21
27
26
1.99
24270--24367
27
3.5
28
90
2
135
26
13
28
31
1.94
24298--24380
27
3.0
27
87
5
96
30
12
25
32
1.92
24270--24381
28
4.0
27
83
6
98
28
12
25
33
1.92
29818--29988
93
1.8
93
94
0
306
28
28
21
21
1.99
29813--29985
46
3.7
46
80
10
217
28
27
21
21
1.99
30406--30465
30
2.0
30
90
0
93
30
25
8
36
1.85
31281--31498
50
4.3
50
77
3
204
24
17
26
31
1.97
38267--38665
50
7.9
50
79
3
406
24
16
27
31
1.97
38221--38665
101
4.4
99
77
3
422
24
16
26
31
1.97
38225--38672
151
3.0
150
87
3
630
24
16
27
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41609--41778
20
8.9
20
75
15
81
35
26
22
15
1.94
41664--41774
40
2.8
40
87
6
154
38
27
18
15
1.91
41664--41786
20
6.2
20
74
19
105
38
26
19
15
1.92
41658--41786
40
3.3
38
81
11
145
37
26
20
16
1.93

Tables:   1

The End!