Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2989
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17937
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Found at i:4550 original size:608 final size:608
Alignment explanation
Indices: 1--10230 Score: 15616
Period size: 608 Copynumber: 16.7 Consensus size: 608
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAA-GTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
*
65 CTAGATTGGAAACTGTAATTGTAGGCGAACTCAACTAACGGTAAAAAATCCT-CCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
*
129 -AAATAAATCACATAGCTCCAAATCATATCCTGTAGTATATGAATCA-CCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* * *
192 CGGTCTGAGGATGGAACGCAGTACTGAAGCTCAAACTCGAACCCAAAGCCTTGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
257 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
322 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
387 AATGAGCGGACTTGGTCAACCGAACCGTAGAACC-TTTTCCACGGAGTTACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
451 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
456 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
516 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
521 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
581 CAAAACCCGTCGCTCACCCAACT
586 CAAAACCCGTCGCTCACCCAACT
604 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
669 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
734 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
799 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCC-TGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
*
863 TTGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
928 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
993 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
1058 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
456 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
1123 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
521 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
1188 CAAAACCCGTCGCTCA-CCAACT
586 CAAAACCCGTCGCTCACCCAACT
*
1210 CAGTCTAATATAACATAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1275 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCT-CCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
1339 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
1404 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
1469 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
1534 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
1599 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
1664 AGT-CCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
456 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
1728 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
521 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
1793 CAAAACCCGTCGCTCACCCAACT
586 CAAAACCCGTCGCTCACCCAACT
1816 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1881 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCT-CCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
1945 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
2010 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
2075 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
2140 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
2205 AATGAGCGGA-TTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
2269 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
456 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
2334 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
521 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
2399 CAAAACCCGTCGCTCACCCAACT
586 CAAAACCCGTCGCTCACCCAACT
2422 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
*
2487 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCTCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
2552 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
2617 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
2682 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAA-CCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
2746 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
2811 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
2876 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
456 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
2941 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
521 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
3006 CAAAACCCGTCGCTCACCCAACT
586 CAAAACCCGTCGCTCACCCAACT
3029 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
3094 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
3159 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
3224 CGGTCTGAGGATGGAACGCAGTACTGAAG-TCTAATCTCGAACCCAGAGCCTTGTGAAGTTTCTT
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTC-AATCTCGAACCCAGAGCCTTGTGAAGTTTCTT
*
3288 CTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTTGAACCCCATGCAGTC
260 CTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTC
3353 TTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATA
325 TTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATA
3418 AAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACA
390 AAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACA
3483 AAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGA
455 AAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGA
3548 AGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGAC
520 AGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGAC
3613 CCAAAA-CCGTCGCTCACCCAACT
585 CCAAAACCCGTCGCTCACCCAACT
3636 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
*
3701 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCTCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
*
3766 GTAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
3831 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
*
3896 TTGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
3961 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
*
4026 AATGAGCGGACTTGGTCAACCGAACTGTAGAACCTCTTTT-CACGGAGTTACCTTAAGAAATACA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCT-TTTTCCACGGAGTTACCTTAAGAAATACA
*
4090 ACGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGA
455 AAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGA
* *
4155 AGACGCCTTCAGACGATCCCAAATTAGTCTAACATTCTCTTCAGTCTCGGAAACCAACTTAGGAC
520 AGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGAC
* *
4220 CAAAAACCCGTCCCTCACCCAACT
585 CCAAAACCCGTCGCTCACCCAACT
* * *
4244 CAGTCTAATATAAGAAAGTATGACACTTATGACCATATAGAGCCTCGTAAGGAGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
* * * *
4309 CTAGATTGGAGACTGTTATTGTAGGCGAACTCAACTAACGATAAAAAATCCTCTCAACTAACTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
* * *
4374 GAATTAAATCTCATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAATTTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* *
4439 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCACGAACCCAGAGCTTTGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
* *
4504 TTGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCTGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
4569 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
* *
4634 AATGAGCGGAATTGGTCAACCGAACCGTAGAACCTCTTTCCACGGAGTTACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
* * * * *
4699 TGTCCCCCATAGAGTACTTGATATCTCTGATTTTTAGATTTACATAGGACTTCTATCTATCATAA
456 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
* *
4764 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTCTCTTCAGTCTCGGAAACCAACTCAAGACC
521 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
*
4829 CAAAACCCGTCCCTCACCCAACT
586 CAAAACCCGTCGCTCACCCAACT
*
4852 CAGTCTAATATAACAGAGTATGACACGTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
* * *
4917 CTAGATTGGAAACTGTAATTTTAGGCGATCTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
* * *
4982 AAAATAAATCACATAGCTCCAAATCATATCCTGTAGTATATGAATCCCCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* * *
5047 CAGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCAAACCCAAAGCCTTGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
* *
5112 TAGAACCGTGAAGTGAAGACAGGATCCATATCAGAGATTATTGAAATTGGAAACCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
* * *
5177 TACAATCTCAGAAATGTACAGCTTCACTAACTCTTGCAGAGAGTAGTCCATCTGACCAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
* * * * *
5242 AATTAGCGGACTTGGT-AGACCAAACCGTAGAACCTCTTTGCACAGAGTTACCTTAAGAAATACA
391 AATGAGCGGACTTGGTCA-ACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACA
5306 AAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGA
455 AAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGA
* * *
5371 AGACGCCTTCAGACGATCCCAAATTAGTCAAACATTATCTTTAGTCTCGGAAACCAACCCAGGAC
520 AGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGAC
* * * *
5436 ACAAAACCCGTTGCTCACCTAAGT
585 CCAAAACCCGTCGCTCACCCAACT
* *
5460 AAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTTGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
*
5525 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAATGGTAAAAAATCCTCCCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
* * *
5590 GAAATAAATCAAATATCTCCAAATCATATCCTCTAGTATATGAATCACCCTTTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* **
5655 CGGTCTGAGGATGGAACGCAGTACTGAAGTACAATCTCGAACCCAGAGATTTGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
*
5720 TTGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
* * * * * *
5785 TACAATCTCAGAAATATAGAACTTCACTTA-TTGAAATTGGA-ACCCCATGCAGTCTTACAATCT
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTT----TTGCAGA---GA-GTAGTC---C-ATCT
* * ** * ** * * * ** *
5848 CAA-A--AATATAGAACTTCA-CTAACTT-TTGC-A--G-AGGGTAG-TCC-ATCTGAACAGGAA
379 GAACAGGAATA-A-AA--TGAGCGGACTTGGT-CAACCGAACCGTAGAACCTTTTTCCAC-GGAG
* ** *** *** ** * * * * **
5902 TAAAATT-AG-CGGACTTGGTCAGCCA-A-ACT-GTAGA-A-C-CT--TTTTCCACGGAGATACC
438 TTACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTT-CA--GA-TTTGC
* * * * *** * * * * ** * *
5957 TTAAGAAATACAAAGTCCCCCA-TAGA-GTACTTGATATCCCTGATTTTCAGATTTG-CATAAGA
499 ATAAG-ACTTC-TA-TCTATCAGAAGACG-CCTTCAGA---C-GA-TCCCAAATTAGTC-T-A-A
* ** * * * ** ** * ** *
6019 CTTCTATCTATCAGAAGATGCCTTCAGACGATCCCAAATTAGTCAAACATTATCTTTAGTCTCGG
552 CAT-TATCT-TC---AG-T--C-TC-G--GAAACCAACTCAG-GACCCAAAACCCGTCG-CTC--
* *
6084 AAACCAACC
601 -ACCCAACT
* ** ** * * * * ** **
6093 CAGGACCCA-A-AAC-CCGT-TGCTCACCTAAGTAAGTCTAATATAACAGAGTAT-G-ACACTTA
1 CA-GTCTAATATAACAGAGTATG-ACA-CT---TATGAC-CATAT---AGAGCCTCGTA-A--GG
* * * ** ** * * * * * **
6152 TGACCATATAGA-GC---CTTGTAAGGTGCCATCTAG-ATGCTAGATTGGAAACTGTTATTGTAG
53 TG-CCATCTAGATGCTAGATTGGAAACTGTTAT-T-GTAGGCGA-ACT--CAAC--TAACGGTA-
*** * * * ** * * *
6212 GCGAA--CT--CAACTAACGGTAAAAAAT-CCTCCCAACTACCTCAGAAATAAATCAAATATCTC
109 AAAAATCCTCCCAACT-AC-CTCAGAAATAAATCAC-A-TAGCTC-----CAAATC---------
*
6272 CAAATCATATCCTCTAGTATATGAATCACCCTTTCAAATTGACCATCGGTCTGAGGATGGAACGC
156 ------ATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCATCGGTCTGAGGATGGAACGC
* **
6337 AGTACTGAAGTACAATCTCGAACCCAGAGATTTGTGAAGTTTCTTCTTA-AACCGTGAAGTGAAG
215 AGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC-TAGAACCGTGAAGTGAAG
*
6401 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATA
279 AGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTA
* * * * * * *
6466 GAACTTCACTTA-TTGAAATTGGA-ACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCA
344 GAGCTTCACTAACTT----TTGCAGA---GA-GTAGTC---C-ATCT--G-AACA-GGAA--T-A
* * * *
6529 CTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAAAATTAGCGGACTTGGTCAGCCAAACT
390 --AA---ATG-AGCG-G-A---C-T-T-----GG--------T--C--A-------A-CCGAACC
* *
6594 GTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCC
417 GTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCT
6659 CTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAG
482 CTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAG
*
6724 TCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTTGCTCA-CCATACT
547 TCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCACCCA-ACT
*
6786 CAGTCTAATATAACAAAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
* ** * *
6851 CTAGATTGGAAACTATTATTGTAGGCGTGCTCAACTAACGATAAAAAATCCTCTCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
* *
6916 GAAATAAATCTCATAGCTTCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* *
6981 CGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGATTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
*
7046 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGCAACCCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
* *
7111 TACAATCTCAGGAATGTAGAGCTTCACTAACTTTTACAGAGAGTAGTCCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
* * *
7176 AATGAGCGGACTTGGTCAACCGAACCATAGAACCTCTTTCCACGTAGTTACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
** * *
7241 AGTCCATCATAGAGTACTTGATATCTCTGATTTTTAGATTTGCATAGGACTTCTATCTATCAGAA
456 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
*
7306 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTCTCTTCAGTCTCGGAAACCAACTCAGGACC
521 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
*
7371 CAAAACCCGTCGCT-AACCACACT
586 CAAAACCCGTCGCTCACCCA-ACT
* * *
7394 AAATCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTTCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
*
7459 CTAGATTGGAAACTGTTATTGTAGGTGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
*
7524 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTTTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* * *
7589 CGGTCTGAGGATGGAACGCAGTATTGAAGTTCAATCTCGAACCCATAGCTTTGTGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
* * * *
7654 TTGAACCGTGAAGTGAAGAGGGGATCCATATAAGAGATTATTGAAATTAGAACCCCATGCAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
*
7719 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTTGTCCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
* *
7784 AATGAGCGGACTTGGTCAACCGAACTGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
7849 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
456 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
*
7914 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGTCC
521 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
7979 CAAAACCCGTCGCTCA-CCACACT
586 CAAAACCCGTCGCTCACCCA-ACT
8002 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
* * * *
8067 CTAGATTGGAAACTATTCTTGTAGGCGAACTCAACTAACAGTAAAAAATCGTCCCAACTACCTCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
* * *
8132 GAAATAAATCACATAGCTCCAAATCAAATCCTCTAGTATGTGAATCACCCTCTCAAAGTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* * *
8197 CGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCTAGAGCCTTGTGAAGTTTTTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
* *
8262 TAGAACCGTGAAGCGAAGAGAGGATCCATATCAGAGATTAATT-AAATTGGAACCCCATCCAGTC
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATT-ATTGAAATTGGAACCCCATGCAGTC
**
8326 TTACAATCTCAGAAATGTAGATTTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATA
325 TTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATA
* * * *
8391 AAATGAGCAGACTTGGTCAACCGAACCATAGAACCTTTTTCCACAGAGATACCTTAAGAAATACA
390 AAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACA
* *
8456 AAGTCCCCCATAGAGTACTTGATATCTCTAATTTTCAGATTTGCATAAGACTTCTATCCATCAGA
455 AAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGA
* * * *
8521 AAACGCCTTCAGACGATCCCAAATTAGTCTAGCATTATATTCAGTCTCGGAAACCAACTTAGGAC
520 AGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGAC
8586 CCAAAACCCGTCGCTCACCCAACT
585 CCAAAACCCGTCGCTCACCCAACT
* * * *
8610 CAGTCTAATATAACAGAGTACGGCACTTATGACCATATAGAGTCTCATAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
* * * *
8675 CTAGACTGGAAACTGTTATTATAGGCGAACTCAACTAACGGT-AAAAATCCTCTCAACTACCTTA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
*
8739 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGATTCACCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* * *
8804 CGGTCTGAGGATGGAACGCAGTACTGAAGTCCAGTCTCGAACCCAGAGCCTTGTGAAGTTTCATC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
* * *
8869 TAGAACTGTGAAGTG-AGAGAGGATCCATATTAGAGATTATTGAAATTGGAA-CCCATACAGTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
* * * *
8932 TACAGTCTCAGAAATGTACAGCTTCACTAACTTTTACAGAGAGTAGTCCCT-TGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
*
8996 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
9061 AG-CCCCTCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGA
456 AGTCCCC-CATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGA
*
9125 AGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGAAAACCAACTCAGGAC
520 AGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGAC
9190 CCAAAACCCGTCGCTCACCCAACT
585 CCAAAACCCGTCGCTCACCCAACT
* *
9214 CAGTCTAATATAACAGAGTATGGCACTTATGACCATATAGAGCCTCGTAAGGTTCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
* *
9279 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAATGGTAAAAAATCCTCCCAACTACCGCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
*
9344 AAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* *
9409 CGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGTTACTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
* * *
9474 TAGAACCGTGAAGTGAAGAGAGGATTCATATCAGAGATTATTGAAATTTGAACCCCATGCATTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
* * *
9539 TACAGTCTCAGAAATGTTGAGCTTCACTAACTTTTGCAGAGAGTAGTTCATCTGAACAGGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
* * *
9604 AATGTGCGGACTTGGTCAACTGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAA
391 AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
* * *
9669 TGTCCCCCATAGAGTACTTTATATCTCTGATTTTCATATTTGCATAAGACTTCTATCTATCAGAA
456 AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
*
9734 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGAAAACCAACTCAGGACC
521 GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
*
9799 CAAAACCCGTCGCT-AACCACACT
586 CAAAACCCGTCGCTCACCCA-ACT
*
9822 CAATCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
1 CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
*
9887 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCGCA
66 CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
* * *
9952 GAAATAAATCAAATAGCTCCAAATCATATCCTCTAGTAAATGAATCACCCTCTCAAATGGACCAT
131 GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
* *
10017 CGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTATGAAGTTTCTTC
196 CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
* * *
10082 TAGAACTGTGAAGTGAAGAGAGGATTCATATCAGAGATTATTGAAATTGGAACCCCATGCATTCT
261 TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
* *
10147 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTTCATCTGAACAAGAATAA
326 TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
10212 AATGAGCGGACTTGGTCAA
391 AATGAGCGGACTTGGTCAA
10231 TGGATCCACA
Statistics
Matches: 8878, Mismatches: 534, Indels: 425
0.90 0.05 0.04
Matches are distributed among these distances:
603 58 0.01
604 383 0.04
605 557 0.06
606 1381 0.16
607 1764 0.20
608 3792 0.43
609 23 0.00
610 6 0.00
611 12 0.00
612 8 0.00
613 12 0.00
614 17 0.00
615 5 0.00
616 5 0.00
617 11 0.00
618 12 0.00
619 2 0.00
620 1 0.00
621 2 0.00
622 1 0.00
624 1 0.00
625 2 0.00
626 1 0.00
628 10 0.00
629 8 0.00
630 5 0.00
631 4 0.00
632 5 0.00
633 7 0.00
634 4 0.00
635 5 0.00
636 4 0.00
637 10 0.00
638 8 0.00
639 9 0.00
640 12 0.00
641 17 0.00
642 9 0.00
643 11 0.00
644 4 0.00
646 1 0.00
647 1 0.00
648 5 0.00
649 3 0.00
650 3 0.00
651 1 0.00
653 4 0.00
654 1 0.00
657 5 0.00
658 1 0.00
660 3 0.00
661 1 0.00
662 2 0.00
663 417 0.05
664 3 0.00
666 2 0.00
667 1 0.00
670 2 0.00
672 1 0.00
673 2 0.00
674 3 0.00
675 1 0.00
678 6 0.00
681 1 0.00
682 3 0.00
683 9 0.00
684 9 0.00
685 16 0.00
686 9 0.00
687 7 0.00
688 6 0.00
689 9 0.00
690 4 0.00
691 4 0.00
692 6 0.00
693 6 0.00
694 5 0.00
695 4 0.00
696 5 0.00
697 8 0.00
698 11 0.00
700 1 0.00
701 2 0.00
702 1 0.00
704 1 0.00
705 2 0.00
708 3 0.00
709 5 0.00
710 3 0.00
711 1 0.00
712 13 0.00
713 11 0.00
714 7 0.00
715 8 0.00
716 5 0.00
717 11 0.00
718 7 0.00
719 7 0.00
720 3 0.00
721 2 0.00
722 2 0.00
723 4 0.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (608 bp):
CAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATG
CTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCA
GAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCAT
CGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGTGAAGTTTCTTC
TAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCT
TACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAGGAATAA
AATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAA
AGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAA
GACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACC
CAAAACCCGTCGCTCACCCAACT
Found at i:5841 original size:55 final size:55
Alignment explanation
Indices: 5757--5867 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
5747 ATATCAGAGA
*
5757 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCAC
1 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAAAAATATAGAACTTCAC
5812 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAAAAATATAGAACTTCAC
1 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAAAAATATAGAACTTCAC
5867 T
1 T
5868 AACTTTTGCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.30
Consensus pattern (55 bp):
TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAAAAATATAGAACTTCAC
Found at i:6415 original size:663 final size:663
Alignment explanation
Indices: 5149--7138 Score: 3545
Period size: 663 Copynumber: 3.0 Consensus size: 663
5139 ATATCAGAGA
* * * * *
5149 TTATTGAAATTGGAAACCCATGCAGTCTTACAATCTCAGAAATGTACAGCTTCACTAACTCTTGC
1 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCACTAACTTTTGC
* * *
5214 AGAGAGTAGTCCATCTGACCAGGAATAAAATTAGCGGACTTGGT-AGACCAAACCGTAGAACCTC
66 AGAGAGTAGTCCATCTGAACAGGAATAAAATTAGCGGACTTGGTCAG-CCAAACTGTAGAACCTT
* * * *
5278 TTTGCACAGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCA
130 TTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCCCTGATTTTCA
5343 GATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCAAACATTA
195 GATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCAAACATTA
*
5408 TCTTTAGTCTCGGAAACCAACCCAGGACACAAAACCCGTTGCTCACCTAAGTAAGTCTAATATAA
260 TCTTTAGTCTCGGAAACCAACCCAGGACCCAAAACCCGTTGCTCACCTAAGTAAGTCTAATATAA
5473 CAGAGTATGACACTTATGACCATATAGAGCCTTGTAAGGTGCCATCTAGATGCTAGATTGGAAAC
325 CAGAGTATGACACTTATGACCATATAGAGCCTTGTAAGGTGCCATCTAGATGCTAGATTGGAAAC
*
5538 TGTTATTGTAGGCGAACTCAACTAATGGTAAAAAATCCTCCCAACTACCTCAGAAATAAATCAAA
390 TGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCAGAAATAAATCAAA
5603 TATCTCCAAATCATATCCTCTAGTATATGAATCACCCTTTCAAATTGACCATCGGTCTGAGGATG
455 TATCTCCAAATCATATCCTCTAGTATATGAATCACCCTTTCAAATTGACCATCGGTCTGAGGATG
*
5668 GAACGCAGTACTGAAGTACAATCTCGAACCCAGAGATTTGTGAAGTTTCTTCTTGAACCGTGAAG
520 GAACGCAGTACTGAAGTACAATCTCGAACCCAGAGATTTGTGAAGTTTCTTCTTAAACCGTGAAG
5733 TGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAA
585 TGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAA
5798 ATATAGAACTTCAC
650 ATATAGAACTTCAC
*
5812 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAAAAATATAGAACTTCACTAACTTTTGC
1 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCACTAACTTTTGC
*
5877 AGAGGGTAGTCCATCTGAACAGGAATAAAATTAGCGGACTTGGTCAGCCAAACTGTAGAACCTTT
66 AGAGAGTAGTCCATCTGAACAGGAATAAAATTAGCGGACTTGGTCAGCCAAACTGTAGAACCTTT
5942 TTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCCCTGATTTTCAG
131 TTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCCCTGATTTTCAG
*
6007 ATTTGCATAAGACTTCTATCTATCAGAAGATGCCTTCAGACGATCCCAAATTAGTCAAACATTAT
196 ATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCAAACATTAT
6072 CTTTAGTCTCGGAAACCAACCCAGGACCCAAAACCCGTTGCTCACCTAAGTAAGTCTAATATAAC
261 CTTTAGTCTCGGAAACCAACCCAGGACCCAAAACCCGTTGCTCACCTAAGTAAGTCTAATATAAC
6137 AGAGTATGACACTTATGACCATATAGAGCCTTGTAAGGTGCCATCTAGATGCTAGATTGGAAACT
326 AGAGTATGACACTTATGACCATATAGAGCCTTGTAAGGTGCCATCTAGATGCTAGATTGGAAACT
6202 GTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCAGAAATAAATCAAAT
391 GTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCAGAAATAAATCAAAT
6267 ATCTCCAAATCATATCCTCTAGTATATGAATCACCCTTTCAAATTGACCATCGGTCTGAGGATGG
456 ATCTCCAAATCATATCCTCTAGTATATGAATCACCCTTTCAAATTGACCATCGGTCTGAGGATGG
6332 AACGCAGTACTGAAGTACAATCTCGAACCCAGAGATTTGTGAAGTTTCTTCTTAAACCGTGAAGT
521 AACGCAGTACTGAAGTACAATCTCGAACCCAGAGATTTGTGAAGTTTCTTCTTAAACCGTGAAGT
6397 GAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAA
586 GAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAA
6462 TATAGAACTTCAC
651 TATAGAACTTCAC
6475 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCACTAACTTTTGC
1 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCACTAACTTTTGC
6540 AGAGAGTAGTCCATCTGAACAGGAATAAAATTAGCGGACTTGGTCAGCCAAACTGTAGAACCTTT
66 AGAGAGTAGTCCATCTGAACAGGAATAAAATTAGCGGACTTGGTCAGCCAAACTGTAGAACCTTT
6605 TTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCCCTGATTTTCAG
131 TTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCCCTGATTTTCAG
*
6670 ATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTAT
196 ATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCAAACATTAT
* * * *
6735 CTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTTGCTCACC-ATACTCAGTCTAATATAA
261 CTTTAGTCTCGGAAACCAACCCAGGACCCAAAACCCGTTGCTCACCTA-AGTAAGTCTAATATAA
* *
6799 CAAAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATCTAGATGCTAGATTGGAAAC
325 CAGAGTATGACACTTATGACCATATAGAGCCTTGTAAGGTGCCATCTAGATGCTAGATTGGAAAC
* ** * * **
6864 TATTATTGTAGGCGTGCTCAACTAACGATAAAAAATCCTCTCAACTACCTCAGAAATAAATCTCA
390 TGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCAGAAATAAATCAAA
* * *
6929 TAGCTTCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATTGACCATCGGTCTGAGGATG
455 TATCTCCAAATCATATCCTCTAGTATATGAATCACCCTTTCAAATTGACCATCGGTCTGAGGATG
* ** *
6994 GAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGATTCTTC-TAGAACCGTGAA
520 GAACGCAGTACTGAAGTACAATCTCGAACCCAGAGATTTGTGAAGTTTCTTCTTA-AACCGTGAA
* *
7058 GTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGCAACCCCATGCAGTCTTACAATCTCAGG
584 GTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGA
* *
7123 AATGTAGAGCTTCAC
649 AATATAGAACTTCAC
7138 T
1 T
7139 AACTTTTACA
Statistics
Matches: 1278, Mismatches: 46, Indels: 6
0.96 0.03 0.00
Matches are distributed among these distances:
662 3 0.00
663 1273 1.00
664 2 0.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (663 bp):
TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCACTAACTTTTGC
AGAGAGTAGTCCATCTGAACAGGAATAAAATTAGCGGACTTGGTCAGCCAAACTGTAGAACCTTT
TTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTACTTGATATCCCTGATTTTCAG
ATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCAAACATTAT
CTTTAGTCTCGGAAACCAACCCAGGACCCAAAACCCGTTGCTCACCTAAGTAAGTCTAATATAAC
AGAGTATGACACTTATGACCATATAGAGCCTTGTAAGGTGCCATCTAGATGCTAGATTGGAAACT
GTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACTACCTCAGAAATAAATCAAAT
ATCTCCAAATCATATCCTCTAGTATATGAATCACCCTTTCAAATTGACCATCGGTCTGAGGATGG
AACGCAGTACTGAAGTACAATCTCGAACCCAGAGATTTGTGAAGTTTCTTCTTAAACCGTGAAGT
GAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAA
TATAGAACTTCAC
Found at i:6504 original size:55 final size:55
Alignment explanation
Indices: 6420--6530 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
6410 ATATCAGAGA
6420 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCAC
1 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCAC
6475 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCAC
1 TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCAC
6530 T
1 T
6531 AACTTTTGCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.30
Consensus pattern (55 bp):
TTATTGAAATTGGAACCCCATGCAGTCTTACAATCTCAGAAATATAGAACTTCAC
Done.