Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1248
Parameters: 2 7 7 80 10 50 1000
Length:  46819

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
652--740
45
2.0
45
84
0
115
26
32
7
32
1.85
750--1153
186
2.2
187
89
1
605
25
27
12
34
1.92
750--1153
47
8.6
47
90
1
587
25
27
12
34
1.92
2196--2278
44
1.9
44
95
4
152
34
7
16
40
1.76
2214--2283
22
3.1
23
67
22
67
32
8
14
44
1.75
4810--5529
40
18.0
40
91
0
963
26
27
20
25
1.99
7016--7106
46
2.0
46
84
0
119
26
31
7
34
1.85
7120--7521
47
8.6
47
90
0
561
26
26
11
35
1.91
7086--7552
141
3.3
141
84
1
560
26
27
11
34
1.91
11670--11733
28
2.2
29
80
2
76
18
21
37
21
1.94
12063--12497
160
2.7
160
86
4
542
37
20
11
31
1.88
12050--12493
27
16.6
27
81
5
393
38
20
10
31
1.87
12050--12468
80
5.2
81
79
6
451
37
20
10
31
1.86
12431--12511
27
3.0
27
87
3
110
37
19
17
25
1.94
15711--16101
27
14.7
27
80
7
349
38
20
10
30
1.86
15710--16062
133
2.7
132
85
4
469
39
20
10
30
1.86
15711--16101
79
4.9
79
80
5
376
38
20
10
30
1.86
15999--16141
27
5.3
27
87
1
146
37
17
14
30
1.90
22329--22370
22
2.0
22
90
4
68
40
11
21
26
1.88
25339--25453
29
4.0
29
82
6
137
27
15
29
26
1.96
31371--31557
39
4.7
40
76
11
197
27
26
20
25
1.99
31371--31557
79
2.4
78
81
8
211
27
26
20
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39420--39599
39
4.6
40
82
8
208
26
28
21
24
1.99
39420--39599
79
2.3
79
83
5
222
26
28
21
24
1.99
41400--41446
20
2.3
20
96
0
85
36
8
21
34
1.84
41493--41577
26
3.4
25
81
4
100
28
22
20
29
1.98
41491--41577
25
3.4
25
79
7
95
28
22
19
28
1.98

Tables:   1

The End!