Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 103 of 211
Found at i:32113891 original size:28 final size:28
Alignment explanation
Indices: 32113821--32113896 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 28
32113811 AAAAGAATTT
32113821 ATAAAATTTATAAAATTATAAAATAAATAC
1 ATAAAATTTA-AAAATT-TAAAATAAATAC
*
32113851 ATAAATTTTAAAAATTTAAAATAATATA-
1 ATAAAATTTAAAAATTTAAAATAA-ATAC
* * *
32113879 TTAAAATTGAAAATTTTA
1 ATAAAATTTAAAAATTTA
32113897 CAAAATTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
28 22 0.55
29 9 0.22
30 9 0.22
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (28 bp):
ATAAAATTTAAAAATTTAAAATAAATAC
Found at i:32114116 original size:30 final size:30
Alignment explanation
Indices: 32114104--32114185 Score: 92
Period size: 36 Copynumber: 2.5 Consensus size: 30
32114094 TTTTTTTTAC
32114104 AATTTTTTAAAATTTAAATATATTTTATTT
1 AATTTTTTAAAATTTAAATATATTTTATTT
*
32114134 AATTTTTTAAAATTTTAAAATTTTATATATTATTTT
1 AATTTTTTAAAA-TTT-AAA---TATATTTTA-TTT
*
32114170 GATTTTTTAAAATTTA
1 AATTTTTTAAAATTTA
32114186 TATTTTATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
30 12 0.27
31 3 0.07
32 3 0.07
34 1 0.02
35 11 0.25
36 14 0.32
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (30 bp):
AATTTTTTAAAATTTAAATATATTTTATTT
Found at i:32114223 original size:40 final size:41
Alignment explanation
Indices: 32114173--32114249 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
32114163 TTATTTTGAT
*
32114173 TTTTTAAAATTT-ATATTT-TATAATTTTATAAAATTTTAAAC
1 TTTTTAAAATTTGA-ATTTATAT-ATTATATAAAATTTTAAAC
*
32114214 TTTTT-AAATTTGAATTTATATATTATATATAATTTT
1 TTTTTAAAATTTGAATTTATATATTATATAAAATTTT
32114250 TTATATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
40 23 0.72
41 9 0.28
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (41 bp):
TTTTTAAAATTTGAATTTATATATTATATAAAATTTTAAAC
Found at i:32115917 original size:47 final size:47
Alignment explanation
Indices: 32115859--32115948 Score: 180
Period size: 47 Copynumber: 1.9 Consensus size: 47
32115849 AAATTCTAGA
32115859 AGAGTCTCATATTCATTCGACCAAATACCAACACATACATGACTTCT
1 AGAGTCTCATATTCATTCGACCAAATACCAACACATACATGACTTCT
32115906 AGAGTCTCATATTCATTCGACCAAATACCAACACATACATGAC
1 AGAGTCTCATATTCATTCGACCAAATACCAACACATACATGAC
32115949 AATACTAGTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.38, C:0.28, G:0.09, T:0.26
Consensus pattern (47 bp):
AGAGTCTCATATTCATTCGACCAAATACCAACACATACATGACTTCT
Found at i:32118180 original size:125 final size:123
Alignment explanation
Indices: 32117999--32118243 Score: 377
Period size: 125 Copynumber: 2.0 Consensus size: 123
32117989 AAATAGTGGG
** * * *
32117999 AAATCGCTTCTACCAGGATGCTATTTAAGAAGAAATTGTGAAATAGTGGCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATTGAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
32118064 TCGCTACAG-TGGTCATGTAAGAAATAATTTTTTTTTGACGTTTTCTGAGCAAATAGTATA
66 TCGCTACAGTTGGTCATGTAAGAAATAA--TTTTTTTGACG-TTTCTGAGCAAATAGTATA
*
32118124 AAATCGCTGATACCAGGATGCTATATGAA-AAGAAATTGTGAAATCGCGCCCTCGTGGACGCGAT
1 AAATCGCTGATACCAGGATGCTAT-TGAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGAT
*
32118188 TTCGCTACAGTTGGTCATGTAGGAAATAATTTTTTTGACGTTTCTGAGCAAATAGT
65 TTCGCTACAGTTGGTCATGTAAGAAATAATTTTTTTGACGTTTCTGAGCAAATAGT
32118244 GTCAATCGCG
Statistics
Matches: 111, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
123 16 0.14
124 11 0.10
125 64 0.58
126 20 0.18
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (123 bp):
AAATCGCTGATACCAGGATGCTATTGAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
TCGCTACAGTTGGTCATGTAAGAAATAATTTTTTTGACGTTTCTGAGCAAATAGTATA
Found at i:32121483 original size:28 final size:28
Alignment explanation
Indices: 32121451--32121705 Score: 196
Period size: 23 Copynumber: 9.8 Consensus size: 28
32121441 AAATCTGCTG
*
32121451 AGTTATGTTAGGGTTTTTAATTTAATTA
1 AGTTAGGTTAGGGTTTTTAATTTAATTA
* *
32121479 AGTTAGGTTA-TGTTAGGGTT--TTTAATTA
1 AGTTAGGTTAGGGTT---TTTAATTTAATTA
* *
32121507 AATTAGGTTAGGGTTTTTAATTAAATTA
1 AGTTAGGTTAGGGTTTTTAATTTAATTA
* *
32121535 GGTTAGGGTTAGGGTTTTTAA-TTAAGT-
1 AGTTA-GGTTAGGGTTTTTAATTTAATTA
32121562 AG---GGTTAGGGTTTTT-A---A-TTA
1 AGTTAGGTTAGGGTTTTTAATTTAATTA
*
32121582 AGTTATGTTAGGGTTTTTAATTTAATTA
1 AGTTAGGTTAGGGTTTTTAATTTAATTA
32121610 AGTTAGGTTA-GG--TTT--TTTAATTA
1 AGTTAGGTTAGGGTTTTTAATTTAATTA
*
32121633 AGTTATGTTAGGGTTTTTAA-TT-A--A
1 AGTTAGGTTAGGGTTTTTAATTTAATTA
* *
32121657 A-TTAGGTTAAGGTTTTTAATTAAATTA
1 AGTTAGGTTAGGGTTTTTAATTTAATTA
*
32121684 GGTTAGGGTTAGGGTTTTTAAT
1 AGTTA-GGTTAGGGTTTTTAAT
32121706 CAAATAATGT
Statistics
Matches: 179, Mismatches: 21, Indels: 53
0.71 0.08 0.21
Matches are distributed among these distances:
19 1 0.01
20 3 0.02
22 1 0.01
23 58 0.32
24 6 0.03
25 4 0.02
26 6 0.03
27 10 0.06
28 55 0.31
29 33 0.18
30 2 0.01
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (28 bp):
AGTTAGGTTAGGGTTTTTAATTTAATTA
Found at i:32121489 original size:33 final size:33
Alignment explanation
Indices: 32121452--32121518 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
32121442 AATCTGCTGA
*
32121452 GTTATGTTAGGGTTTTTAATTTAATTAAGTTAG
1 GTTATGTTAGGGTTTTTAATTAAATTAAGTTAG
*
32121485 GTTATGTTAGGGTTTTTAATTAAATTAGGTTAG
1 GTTATGTTAGGGTTTTTAATTAAATTAAGTTAG
32121518 G
1 G
32121519 GTTTTTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (33 bp):
GTTATGTTAGGGTTTTTAATTAAATTAAGTTAG
Found at i:32121513 original size:51 final size:48
Alignment explanation
Indices: 32121471--32121710 Score: 229
Period size: 51 Copynumber: 4.8 Consensus size: 48
32121461 GGGTTTTTAA
32121471 TTTAATTAAGTTAGGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
1 TTTAATTAA-TTAGGTTATGTTAGGGTTTTTAATTAAATTAGGTTA--GTT
* * **
32121522 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT-AAGTAGGGTTAGGG
1 TTTAATT-AATTAGGTTA-TGTTAGGGTTTTTAATTAAATTA-GGTTAGTT
* *
32121572 TTT--TTAATTAAGTTATGTTAGGGTTTTTAATTTAATTAAGTTAGGTTAGGT
1 TTTAATTAATTAGGTTATGTTAGGGTTTTTAA-TT-A--AA-TTAGGTTAGTT
*
32121623 TTT--TTAATTAAGTTATGTTAGGGTTTTTAATTAAATTAGGTTAAGGTT
1 TTTAATTAATTAGGTTATGTTAGGGTTTTTAATTAAATTAGGTT-A-GTT
* *
32121671 TTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATCAAAT
1 TTTAATT-AATTAGGTTA-TGTTAGGGTTTTTAATTAAAT
32121711 AATGTCAAAA
Statistics
Matches: 162, Mismatches: 12, Indels: 29
0.80 0.06 0.14
Matches are distributed among these distances:
46 21 0.13
47 14 0.09
48 7 0.04
49 1 0.01
50 8 0.05
51 67 0.41
52 44 0.27
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (48 bp):
TTTAATTAATTAGGTTATGTTAGGGTTTTTAATTAAATTAGGTTAGTT
Found at i:32121516 original size:23 final size:23
Alignment explanation
Indices: 32121490--32121693 Score: 230
Period size: 23 Copynumber: 8.4 Consensus size: 23
32121480 GTTAGGTTAT
32121490 GTTAGGGTTTTTAATTAAATTAG
1 GTTAGGGTTTTTAATTAAATTAG
32121513 GTTAGGGTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTTAATT-AA--A--TTA-G
*
32121542 GTTAGGGTTTTTAATT-AAGTAGG
1 GTTAGGGTTTTTAATTAAATTA-G
* *
32121565 GTTAGGGTTTTTAATTAAGTTAT
1 GTTAGGGTTTTTAATTAAATTAG
32121588 GTTAGGGTTTTTAATTTAATTAAGTTAG
1 GTTAGGGTTTTTAA-TT-A--AA-TTAG
* * *
32121616 GTTAGGTTTTTTAATTAAGTTAT
1 GTTAGGGTTTTTAATTAAATTAG
32121639 GTTAGGGTTTTTAATTAAATTAG
1 GTTAGGGTTTTTAATTAAATTAG
*
32121662 GTTAAGGTTTTTAATTAAATTAG
1 GTTAGGGTTTTTAATTAAATTAG
32121685 GTTAGGGTT
1 GTTAGGGTT
32121694 AGGGTTTTTA
Statistics
Matches: 155, Mismatches: 14, Indels: 24
0.80 0.07 0.12
Matches are distributed among these distances:
23 103 0.66
24 8 0.05
25 2 0.01
26 2 0.01
27 4 0.03
28 19 0.12
29 17 0.11
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.49
Consensus pattern (23 bp):
GTTAGGGTTTTTAATTAAATTAG
Found at i:32123863 original size:14 final size:15
Alignment explanation
Indices: 32123846--32123879 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32123836 AATAAATATC
32123846 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
32123860 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
32123875 TAAAA
1 TAAAA
32123880 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:32124008 original size:27 final size:28
Alignment explanation
Indices: 32123978--32124030 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
32123968 TGAAAATATT
*
32123978 AAAAATTTTAAAATTAT-TTAAAAAATA
1 AAAAAATTTAAAATTATCTTAAAAAATA
*
32124005 AAAAAATTTAAAATTTTCTTAAAAAA
1 AAAAAATTTAAAATTATCTTAAAAAA
32124031 ATGAAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (28 bp):
AAAAAATTTAAAATTATCTTAAAAAATA
Found at i:32124099 original size:22 final size:22
Alignment explanation
Indices: 32124074--32124115 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32124064 ATTTGGAGAT
*
32124074 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
32124096 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
32124116 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:32124123 original size:30 final size:30
Alignment explanation
Indices: 32124087--32124145 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
32124077 TTGAAGGAAA
* *
32124087 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAAATTGAGAGT
32124117 TTGAGAGAATTTTGGAAGGAAATTGAGAG
1 TTGAGAGAATTTTGGAAGGAAATTGAGAG
32124146 AAATTTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.31
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAAATTGAGAGT
Found at i:32124136 original size:52 final size:51
Alignment explanation
Indices: 32124065--32124167 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 51
32124055 TTAATATGAA
* * *
32124065 TTTGGAGATTTTTTGAAGGAAATTGAGAG-GATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTT-GAAGGGAA-TTGAGAG
32124116 TTTGAGAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
32124168 AATTTTTGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
51 4 0.09
52 33 0.72
53 9 0.20
ACGTcount: A:0.35, C:0.00, G:0.33, T:0.32
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
Found at i:32124142 original size:22 final size:22
Alignment explanation
Indices: 32124117--32124208 Score: 125
Period size: 22 Copynumber: 4.2 Consensus size: 22
32124107 ATTTGAGAGT
32124117 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
*
32124139 TTGAGAGAAATTTT-GAAGGGAA
1 TTGAGAG-AATTTTGGAAGGAAA
*
32124161 TTGAGAGAATTTTTGAAAGG-AA
1 TTGAGAGAA-TTTTGGAAGGAAA
*
32124183 TTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
32124205 TTGA
1 TTGA
32124209 TATTGAATTT
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
21 10 0.16
22 42 0.68
23 10 0.16
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.30
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:32124166 original size:44 final size:44
Alignment explanation
Indices: 32124117--32124208 Score: 141
Period size: 44 Copynumber: 2.1 Consensus size: 44
32124107 ATTTGAGAGT
* *
32124117 TTGAGAGAA-TTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAA
1 TTGAGAGAATTTTTGAAAGG-AATTGAGAGAAATTTTGAAGGAAA
*
32124161 TTGAGAGAATTTTTGAAAGGAATTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTTGAAAGGAATTGAGAGAAATTTTGAAGGAAA
32124205 TTGA
1 TTGA
32124209 TATTGAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 35 0.80
45 9 0.20
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.30
Consensus pattern (44 bp):
TTGAGAGAATTTTTGAAAGGAATTGAGAGAAATTTTGAAGGAAA
Found at i:32124812 original size:7 final size:7
Alignment explanation
Indices: 32124796--32124824 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
32124786 TCTAAAAATT
32124796 AAATTT-
1 AAATTTA
32124802 AAATTTA
1 AAATTTA
32124809 AAATTTA
1 AAATTTA
32124816 AAATTTA
1 AAATTTA
32124823 AA
1 AA
32124825 GACGATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAATTTA
Found at i:32129916 original size:6 final size:6
Alignment explanation
Indices: 32129907--32129935 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
32129897 TTGCCCTTGC
32129907 CCTTCT CCTTCT CCTTCT CCTTCT CCTTC
1 CCTTCT CCTTCT CCTTCT CCTTCT CCTTC
32129936 CCCCTCCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
CCTTCT
Found at i:32135086 original size:46 final size:45
Alignment explanation
Indices: 32134979--32135372 Score: 414
Period size: 46 Copynumber: 8.6 Consensus size: 45
32134969 TACATATGAT
* *
32134979 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
* *
32135022 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAA-GCTAC
32135068 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
*
32135104 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
* * * *
32135150 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG-CTAAGCTAC
*
32135196 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
* * *
32135248 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG-CTAAGCTAC
* *
32135294 TACTTATCACTTTCCACTTGTCACTTGATAAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
32135346 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
32135373 AGTACTCAAA
Statistics
Matches: 299, Mismatches: 23, Indels: 55
0.79 0.06 0.15
Matches are distributed among these distances:
36 29 0.10
38 3 0.01
40 2 0.01
41 1 0.00
42 3 0.01
43 10 0.03
44 7 0.02
45 21 0.07
46 137 0.46
47 2 0.01
48 1 0.00
49 2 0.01
50 1 0.00
51 2 0.01
52 78 0.26
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (45 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
Found at i:32135109 original size:36 final size:36
Alignment explanation
Indices: 32135068--32135186 Score: 130
Period size: 36 Copynumber: 3.0 Consensus size: 36
32135058 CTAAGGCTAA
32135068 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
*
32135104 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG
*
32135146 CTACCACTTATCACTTTGTCTCTTGATCAGATAAGTATAG
1 ----CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
32135186 C
1 C
32135187 CGAAGCTATC
Statistics
Matches: 70, Mismatches: 3, Indels: 20
0.75 0.03 0.22
Matches are distributed among these distances:
36 30 0.43
38 3 0.04
40 3 0.04
42 3 0.04
44 3 0.04
46 28 0.40
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:32135129 original size:82 final size:82
Alignment explanation
Indices: 32135022--32135186 Score: 294
Period size: 82 Copynumber: 2.0 Consensus size: 82
32135012 GCTAGGCTAC
*
32135022 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
32135087 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
* * *
32135104 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
32135169 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
32135186 C
1 C
32135187 CGAAGCTATC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (82 bp):
CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
TGATCAGATAAGTATAG
Found at i:32135223 original size:52 final size:52
Alignment explanation
Indices: 32135150--32135366 Score: 275
Period size: 52 Copynumber: 4.2 Consensus size: 52
32135140 CTAAAGCTAC
* *
32135150 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
32135203 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
32135255 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * * ** *
32135301 CACTTTCCACTTGTCACTTGATAAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
32135353 CACTTTGTCACTTG
1 CACTTT-TCACTTG
32135367 ATCAGAAGTA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
46 42 0.30
49 1 0.01
52 84 0.59
53 15 0.11
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:32135269 original size:98 final size:98
Alignment explanation
Indices: 32135104--32135372 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
32135094 ATAAGTATAG
* * *
32135104 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
32135169 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
32135203 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
*
32135268 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
32135301 CACTTTCCACTTGTCACTTGATAAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
32135366 GATCAGA
66 GATCAGA
32135373 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:32138092 original size:16 final size:16
Alignment explanation
Indices: 32138071--32138103 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
32138061 TTCGCTGTAT
32138071 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
32138087 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
32138103 T
1 T
32138104 AACAAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:32138416 original size:22 final size:21
Alignment explanation
Indices: 32138391--32138441 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
32138381 AGATATTCTA
*
32138391 AATATTAA-ATTACTAAAATCAT
1 AATATTAATACTA-TAAAAT-AT
32138413 AATATATAATACTATAAAATAT
1 AATAT-TAATACTATAAAATAT
32138435 AAT-TTAA
1 AATATTAA
32138442 CATAATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.12
21 1 0.04
22 10 0.38
23 9 0.35
24 3 0.12
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (21 bp):
AATATTAATACTATAAAATAT
Found at i:32138445 original size:121 final size:121
Alignment explanation
Indices: 32138316--32138607 Score: 498
Period size: 121 Copynumber: 2.4 Consensus size: 121
32138306 TTAATCATAT
32138316 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
*
32138381 -AGATATTCTAAATATTAAATTACTAAAATCATAATATATAATACTATAAAATATAA
66 AAGATATTCT-AATATGAAATTACTAAAATCATAATATATAATACTATAAAATATAA
32138437 TTTAACATAATTATTATTAAATATAATTTAAT-AAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
* * * *
32138501 AAATATATTCTTATATGAATTTACTAAAATCCTAATATATAATACTATAAAATATAA
66 -AAGATATTCTAATATGAAATTACTAAAATCATAATATATAATACTATAAAATATAA
*
32138558 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT
1 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT
32138608 CTAAAGTTTG
Statistics
Matches: 162, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
120 32 0.20
121 105 0.65
122 25 0.15
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (121 bp):
TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
AAGATATTCTAATATGAAATTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:32138497 original size:17 final size:17
Alignment explanation
Indices: 32138457--32138490 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
32138447 TTATTATTAA
32138457 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32138474 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
32138491 TCTTAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:32145701 original size:558 final size:554
Alignment explanation
Indices: 32144469--32146150 Score: 2415
Period size: 561 Copynumber: 3.0 Consensus size: 554
32144459 CAAGAAAGAT
* * * * ** *
32144469 CCAACTTGGCCTTATATCACATAAGGGGTGGCAAACCTTAGTGTTTTGTGGAGGGTGTCACTGTC
1 CCAACTTGGCCTTATATCACGTAAGGGGCGACAAACCCTAGTGTTTTAAGG-GGGTGTCACCGTC
* * *
32144534 CCCTATACTATAGTTCTACTATGATATTGTATTTTTTATTAAATATTTTTATTTAATTAGACCTT
65 CCCTATACTATAGTTCTACTATAATATTGTATTTTTTATTAAATATTATTATTGAATTAGACCTT
* *
32144599 ATTCAAATAGATGTTATGTTGTAACACCCCTTAGCCTG-CTAGGAGACATGGCGTATATCAATCA
130 ATTCAAATAGATGTTTTGTTGTAACACCCCTTAGCCCGTC-AGGAGACATGGCGTATATCAATCA
* * * *
32144663 GCCAAATAAACCTG-TCAATGGACTAGGGCGTTACTGATAGACTCAAA-CCTTTGGCTTAATTTA
194 GCCAAACAAA-CTGCCCAACGGACGA-GGCGTTACTGATAGACTCAAATCCTTTGGCTTAATTTA
* *
32144726 AATCTTTGAGAAATTAGTTGTAAGGATTCTCCGTTTAGTGAAAGATCATTATTCTTGGCTCATTT
257 AATCTTTGAGAAATCAGTTGTAAGG-TTCTCC-TTTAGTGAAAGACCATTATTCTTGGCTCATTT
* *
32144791 AGTAACGTATCTTTGAAGAAAGTAATAGGAATTAATAAAGACAATCTTTAAATCATACACTGCCA
320 AGTAACGTATCCTTGAAGAAAGTAATAGGAATTAATAAAG-CAATCTTTAAATCATACACTGTCA
* * *
32144856 TGTATGGAAAATACACTTAATAGAAAAGACAAGTTTGTAATATGCAAATCAAGGGAGTTT-GCGT
384 TGTATGGCAAATACACTTAATAGAAAAGGCAAGTTTGTAATATGCAAATCAAGGGAGTTTGGCAT
* * * *
32144920 ACACATGTATAATAAGGGGAAGTTCTACTTTATGACAAAAACAATACAGTTGTGGGGTAAAAACA
449 ACACATGTATAATAAGGGGCAGTTCCACTTTAAGACAAAAACAATA-TGTTGTGGGGTAAAAACA
* * * *
32144985 AAAGTCAAGTATAAAACATTTATATACGGCATCCGCCAACTAG
513 AAA-TTAAGTACAAAACATTTATATATGCCATCCGCCAACTAG
** * * * * *
32145028 ATAACTTGGCTTTATATCACGTAAGGGGC-ACAAATCCTAATGTTTTACGGGGGGTGTCACCATC
1 CCAACTTGGCCTTATATCACGTAAGGGGCGACAAACCCTAGTGTTTTA-AGGGGGTGTCACCGTC
32145092 CCCTATACTATAGTTCTACTATAATATT-TCA-TTTTTATTAAATATTATTATTGAATTAGACCT
65 CCCTATACTATAGTTCTACTATAATATTGT-ATTTTTTATTAAATATTATTATTGAATTAGACCT
* *
32145155 TATTCAAATAGATGTTTTGTTGTAACACCCCTTAGCCCGTCAAGAGACATGGCGTATATCAACCA
129 TATTCAAATAGATGTTTTGTTGTAACACCCCTTAGCCCGTCAGGAGACATGGCGTATATCAATCA
* * * *
32145220 GCCAAACAAGCTGCCCAACGGACCGATGTGTTATTGATAGACTCAAATCCTTTGGCTTAATTTAA
194 GCCAAACAAACTGCCCAACGGA-CGAGGCGTTACTGATAGACTCAAATCCTTTGGCTTAATTTAA
* * *
32145285 ATATTTGAGAAATCAATTGTAAGAGTTTTCCTTCTAGTGAAAGACCATTATTCTTGGCTCATTTA
258 ATCTTTGAGAAATCAGTTGTAAG-GTTCTCCTT-TAGTGAAAGACCATTATTCTTGGCTCATTTA
* *
32145350 GTAACGTATCCTTGAAGAAAGTAATAGGAATTAATAAATGCAATCTTTAAATCATACTCTGTCGT
321 GTAACGTATCCTTGAAGAAAGTAATAGGAATTAATAAA-GCAATCTTTAAATCATACACTGTCAT
* * *
32145415 GTATGGCGAGTACACTTAAAAGAAAAGGCAAGTTTGTAATATGCAAATCAAGGGAGTTTGGCATA
385 GTATGGCAAATACACTTAATAGAAAAGGCAAGTTTGTAATATGCAAATCAAGGGAGTTTGGCATA
*
32145480 CACATGTATAATAGGGGGCAGTTCCACTTTAAGACAAAAACAATATGTTTGTGGGGTAAAAACAA
450 CACATGTATAATAAGGGGCAGTTCCACTTTAAGACAAAAACAATATG-TTGTGGGGTAAAAACAA
** *
32145545 AATTAAAGTACAAAACGCTTATATATGCCATCCGTCAACTAG
514 AATT-AAGTACAAAACATTTATATATGCCATCCGCCAACTAG
* **
32145587 CCAACTTGTCCTTATATCACGTAAGGGGCGACAAACCCTAGTGTTTTAAGGGGGTGTCACCGTTT
1 CCAACTTGGCCTTATATCACGTAAGGGGCGACAAACCCTAGTGTTTTAAGGGGGTGTCACCGTCC
*
32145652 CCTGTACTATAGTTCTACTATAATATTGTATTTTTTTATTAAATATTATTATTGAATTAGACCTT
66 CCTATACTATAGTTCTACTATAATATTGTA-TTTTTTATTAAATATTATTATTGAATTAGACCTT
* * *
32145717 ATTCAAATAGATGTTTTGTTGTAACACCCCTTAGCCCTTCAGGAGACATGGCATATATCAATTAG
130 ATTCAAATAGATGTTTTGTTGTAACACCCCTTAGCCCGTCAGGAGACATGGCGTATATCAATCAG
** * * * *
32145782 CCAAACAAACCACCCAACGGATCGGGGCATTACTGGTAGACTCAAATCCTTTCGCTTAATTTAAA
195 CCAAACAAACTGCCCAACGGA-CGAGGCGTTACTGATAGACTCAAATCCTTTGGCTTAATTTAAA
* *
32145847 TCTTTGAGAAATCAGTTGTAAGGGTTCTCTTTTTAGTGAAAGACCATTATTCTTGGCCCATTTAG
259 TCTTTGAGAAATCAGTTGTAA-GGTTCTC-CTTTAGTGAAAGACCATTATTCTTGGCTCATTTAG
32145912 TAACGTATCCTTGAAGAAAGTAATAGGAATTAATAAAGGCAATCTTTAAATCATACACTGTCATG
322 TAACGTATCCTTGAAGAAAGTAATAGGAATTAATAAA-GCAATCTTTAAATCATACACTGTCATG
* *
32145977 TATGGCAAATACACTTAATAGAAAATGCAAGTTTGTAATATGCAAATCAAGGGAGTTTGGTATAC
386 TATGGCAAATACACTTAATAGAAAAGGCAAGTTTGTAATATGCAAATCAAGGGAGTTTGGCATAC
*
32146042 ACATGTATAATAAGGGGCAGTTTCACTTTAAGACAAAAACAATATGATTGTGGGGTAAAAACAAA
451 ACATGTATAATAAGGGGCAGTTCCACTTTAAGACAAAAACAATATG-TTGTGGGGTAAAAACAAA
* *
32146107 AGTTAAGTACAAAACTTTTATATATGCCATCTGCCAACTAG
515 A-TTAAGTACAAAACATTTATATATGCCATCCGCCAACTAG
32146148 CCA
1 CCA
32146151 TGCATGATAC
Statistics
Matches: 1002, Mismatches: 102, Indels: 36
0.88 0.09 0.03
Matches are distributed among these distances:
556 3 0.00
557 124 0.12
558 242 0.24
559 188 0.19
560 17 0.02
561 423 0.42
562 5 0.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (554 bp):
CCAACTTGGCCTTATATCACGTAAGGGGCGACAAACCCTAGTGTTTTAAGGGGGTGTCACCGTCC
CCTATACTATAGTTCTACTATAATATTGTATTTTTTATTAAATATTATTATTGAATTAGACCTTA
TTCAAATAGATGTTTTGTTGTAACACCCCTTAGCCCGTCAGGAGACATGGCGTATATCAATCAGC
CAAACAAACTGCCCAACGGACGAGGCGTTACTGATAGACTCAAATCCTTTGGCTTAATTTAAATC
TTTGAGAAATCAGTTGTAAGGTTCTCCTTTAGTGAAAGACCATTATTCTTGGCTCATTTAGTAAC
GTATCCTTGAAGAAAGTAATAGGAATTAATAAAGCAATCTTTAAATCATACACTGTCATGTATGG
CAAATACACTTAATAGAAAAGGCAAGTTTGTAATATGCAAATCAAGGGAGTTTGGCATACACATG
TATAATAAGGGGCAGTTCCACTTTAAGACAAAAACAATATGTTGTGGGGTAAAAACAAAATTAAG
TACAAAACATTTATATATGCCATCCGCCAACTAG
Found at i:32152092 original size:9 final size:9
Alignment explanation
Indices: 32152034--32152153 Score: 59
Period size: 9 Copynumber: 13.0 Consensus size: 9
32152024 GGATGCGACA
*
32152034 AAAAATGAT
1 AAAAATTAT
*
32152043 ATAAACTTAT
1 A-AAAATTAT
* *
32152053 ATATATTAT
1 AAAAATTAT
*
32152062 CAAAA-TAT
1 AAAAATTAT
* *
32152070 AAAAACCTAA
1 AAAAA-TTAT
32152080 AAAAATTAT
1 AAAAATTAT
32152089 AAAAATTAT
1 AAAAATTAT
32152098 -AAAATTAAT
1 AAAAATT-AT
*
32152107 AAAACATATGT
1 AAAA-AT-TAT
32152118 AAAATATT-T
1 AAAA-ATTAT
*
32152127 AAAATTTTAT
1 AAAA-ATTAT
*
32152137 AAAAATAAT
1 AAAAATTAT
32152146 -AAAATTAT
1 AAAAATTAT
32152154 TAAACTTTAT
Statistics
Matches: 85, Mismatches: 18, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
8 20 0.24
9 32 0.38
10 23 0.27
11 9 0.11
12 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:32152652 original size:9 final size:9
Alignment explanation
Indices: 32152640--32152831 Score: 70
Period size: 10 Copynumber: 19.8 Consensus size: 9
32152630 TTTTATGCTT
32152640 TTTTTATAA
1 TTTTTATAA
32152649 TTTTTATAA
1 TTTTTATAA
*
32152658 GTTTATATCAA
1 -TTTTTAT-AA
*
32152669 TTTTAAT-A
1 TTTTTATAA
*
32152677 TTTTTATAG
1 TTTTTATAA
32152686 TTTTT-TAAGA
1 TTTTTAT-A-A
*
32152696 TTTTTAGTACG
1 TTTTTA-TA-A
*
32152707 TTTTTAAAA
1 TTTTTATAA
*
32152716 TTTTAAATAA
1 TTTT-TATAA
**
32152726 AATTTATTAA
1 TTTTTA-TAA
32152736 -TTTTATAGA
1 TTTTTATA-A
32152745 TTTTTTATAA
1 -TTTTTATAA
*
32152755 TTAATTTTATTTGA
1 -T--TTTTA--TAA
32152769 TTTTTA-ATA
1 TTTTTATA-A
32152778 TTTTTATAA
1 TTTTTATAA
*
32152787 GTTTTAATAA
1 -TTTTTATAA
32152797 TTTTTATAAA
1 TTTTTAT-AA
*
32152807 TTTATATCAA
1 TTTTTAT-AA
*
32152817 TTTTAAT-A
1 TTTTTATAA
32152825 TTTTTAT
1 TTTTTAT
32152832 TTTTTGATGA
Statistics
Matches: 138, Mismatches: 25, Indels: 41
0.68 0.12 0.20
Matches are distributed among these distances:
8 17 0.12
9 39 0.28
10 52 0.38
11 21 0.15
12 6 0.04
13 1 0.01
14 2 0.01
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (9 bp):
TTTTTATAA
Found at i:32152791 original size:19 final size:19
Alignment explanation
Indices: 32152669--32152805 Score: 64
Period size: 19 Copynumber: 6.9 Consensus size: 19
32152659 TTTATATCAA
32152669 TTTTAATATTTTTAT-AGTT
1 TTTTAATATTTTTATAAG-T
* *
32152688 TTTTAAGATTTTTAGTACGT
1 TTTTAATATTTTTA-TAAGT
* * *
32152708 TTTTAAAATTTTAAATAAAAT
1 TTTTAATATTTT-TAT-AAGT
* * **
32152729 TTATTAAT-TTTATAGATTT
1 TT-TTAATATTTTTATAAGT
* **
32152748 TTTATAATTAATTTTATTTGAT
1 TTT-TAA-TATTTTTATAAG-T
32152770 TTTTAATATTTTTATAAG-
1 TTTTAATATTTTTATAAGT
32152788 TTTTAATAATTTTTATAA
1 TTTTAAT-ATTTTTATAA
32152806 ATTTATATCA
Statistics
Matches: 88, Mismatches: 20, Indels: 20
0.69 0.16 0.16
Matches are distributed among these distances:
18 8 0.09
19 30 0.34
20 25 0.28
21 17 0.19
22 8 0.09
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.60
Consensus pattern (19 bp):
TTTTAATATTTTTATAAGT
Found at i:32152855 original size:22 final size:20
Alignment explanation
Indices: 32152825--32152867 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
32152815 AATTTTAATA
*
32152825 TTTTTATTTTTTGATGATTTT
1 TTTTTATTTTTT-ATAATTTT
32152846 TTTTCTATTTTTTATAATTTT
1 TTTT-TATTTTTTATAATTTT
32152867 T
1 T
32152868 ATGAGTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (20 bp):
TTTTTATTTTTTATAATTTT
Found at i:32152876 original size:19 final size:19
Alignment explanation
Indices: 32152853--32152891 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32152843 TTTTTTTCTA
*
32152853 TTTTTTATAATTTTTATGAG
1 TTTTTAATAA-TTTTATGAG
*
32152873 TTTTTAATCATTTTATGAG
1 TTTTTAATAATTTTATGAG
32152892 AAAAATAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.62
Consensus pattern (19 bp):
TTTTTAATAATTTTATGAG
Found at i:32156629 original size:25 final size:24
Alignment explanation
Indices: 32156583--32156679 Score: 99
Period size: 25 Copynumber: 3.9 Consensus size: 24
32156573 GATACACCAT
* *
32156583 AGCTCGT-ATGAGTTTATCGATTTGC
1 AGCTCGTGA-GAGCTTACCGATTT-C
*
32156608 AGCTCGTGAGAGCTTACTGATTCTC
1 AGCTCGTGAGAGCTTACCGATT-TC
32156633 AGCTCGT-ATGAGCTTACCGATTTAC
1 AGCTCGTGA-GAGCTTACCGATTT-C
*
32156658 AGCTCGTGAGAGCATACCGATT
1 AGCTCGTGAGAGCTTACCGATT
32156680 CATAGCTCGT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
24 2 0.03
25 57 0.92
26 3 0.05
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.32
Consensus pattern (24 bp):
AGCTCGTGAGAGCTTACCGATTTC
Found at i:32156642 original size:50 final size:50
Alignment explanation
Indices: 32156580--32156695 Score: 171
Period size: 50 Copynumber: 2.3 Consensus size: 50
32156570 GCGGATACAC
* * * * *
32156580 CATAGCTCGTATGAGTTTATCGATTTGCAGCTCGTGAGAGCTTACTGATT
1 CATAGCTCGTATGAGCTTACCGATTTACAGCTCGTGAGAGCATACCGATT
32156630 C-TCAGCTCGTATGAGCTTACCGATTTACAGCTCGTGAGAGCATACCGATT
1 CAT-AGCTCGTATGAGCTTACCGATTTACAGCTCGTGAGAGCATACCGATT
32156680 CATAGCTCGTATGAGC
1 CATAGCTCGTATGAGC
32156696 ATACATGTAC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
49 1 0.02
50 57 0.97
51 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (50 bp):
CATAGCTCGTATGAGCTTACCGATTTACAGCTCGTGAGAGCATACCGATT
Found at i:32156686 original size:25 final size:25
Alignment explanation
Indices: 32156580--32156699 Score: 93
Period size: 25 Copynumber: 4.8 Consensus size: 25
32156570 GCGGATACAC
** *
32156580 CATAGCTCGTATGAGTTTATCGATT
1 CATAGCTCGTATGAGCATACCGATT
*** * *
32156605 TGCAGCTCGTGA-GAGCTTACTGATT
1 CATAGCTCGT-ATGAGCATACCGATT
*
32156630 C-TCAGCTCGTATGAGCTTACCGATT
1 CAT-AGCTCGTATGAGCATACCGATT
* *
32156655 TACAGCTCGTGA-GAGCATACCGATT
1 CATAGCTCGT-ATGAGCATACCGATT
32156680 CATAGCTCGTATGAGCATAC
1 CATAGCTCGTATGAGCATAC
32156700 ATGTACAAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
24 2 0.03
25 71 0.95
26 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (25 bp):
CATAGCTCGTATGAGCATACCGATT
Found at i:32163191 original size:24 final size:24
Alignment explanation
Indices: 32163163--32163220 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
32163153 CCACATTGTT
32163163 GGAGAAATAAGAAAAGTGAGAGAA
1 GGAGAAATAAGAAAAGTGAGAGAA
*
32163187 GGAGAAATAAGAAATGTGAGAGAA
1 GGAGAAATAAGAAAAGTGAGAGAA
*
32163211 TGAGAAATAA
1 GGAGAAATAA
32163221 TGTGGTGAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.57, C:0.00, G:0.31, T:0.12
Consensus pattern (24 bp):
GGAGAAATAAGAAAAGTGAGAGAA
Found at i:32172904 original size:4 final size:4
Alignment explanation
Indices: 32172890--32172931 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
32172880 GAAAACTTAA
* * *
32172890 GTAT ATAT GTAT GTAT GTAT GCAT GTAT GCAT GTAT GTAT GT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GT
32172932 GTGTGTATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (4 bp):
GTAT
Found at i:32178796 original size:9 final size:9
Alignment explanation
Indices: 32178782--32178812 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
32178772 CTGATTACAG
32178782 TTGAAGCAT
1 TTGAAGCAT
32178791 TTGAAGCA-
1 TTGAAGCAT
32178799 TTGAAGCAT
1 TTGAAGCAT
32178808 TTGAA
1 TTGAA
32178813 ATGGCATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (9 bp):
TTGAAGCAT
Found at i:32179773 original size:22 final size:22
Alignment explanation
Indices: 32179743--32179789 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
32179733 ACAAATCCTA
*
32179743 TCTCGATTTCCTTCCAAAATCC
1 TCTCAATTTCCTTCCAAAATCC
*
32179765 TCTCAATTTCCTTCCAAAATTC
1 TCTCAATTTCCTTCCAAAATCC
32179787 TCT
1 TCT
32179790 AAAACTCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.34, G:0.02, T:0.40
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAAATCC
Found at i:32179841 original size:52 final size:52
Alignment explanation
Indices: 32179743--32179841 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 52
32179733 ACAAATCCTA
* *** *
32179743 TCTCGATTTCCTTCCAAAATCCTCTCAATTTCCTTCCAAAATTCTCTAAAAC
1 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTGAAAAAAATCTCTAAAAC
32179795 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTGAAAAAAATCTCT
1 TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTGAAAAAAATCTCT
32179842 CAAATCCATA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.30, C:0.31, G:0.02, T:0.36
Consensus pattern (52 bp):
TCTCAATTTCCTTCCAAAATCCTCTCAATTTCCTGAAAAAAATCTCTAAAAC
Found at i:32181007 original size:7 final size:7
Alignment explanation
Indices: 32180995--32181020 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32180985 AGTGGATTGA
32180995 TATTTAG
1 TATTTAG
32181002 TATTTAG
1 TATTTAG
32181009 TATTTAG
1 TATTTAG
32181016 TATTT
1 TATTT
32181021 TTTATTATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62
Consensus pattern (7 bp):
TATTTAG
Found at i:32182232 original size:23 final size:23
Alignment explanation
Indices: 32182202--32182288 Score: 102
Period size: 23 Copynumber: 3.5 Consensus size: 23
32182192 TTAAAACCAT
32182202 AAACCCTAACCTAATTTAATTAA
1 AAACCCTAACCTAATTTAATTAA
* *
32182225 AAACCCTAACCTCAACCCAATTTATTTTA
1 AAACCCTAACCT------AATTTAATTAA
32182254 AAACCCTAACCTAATTTAATTAA
1 AAACCCTAACCTAATTTAATTAA
32182277 AAACCCTAACCT
1 AAACCCTAACCT
32182289 CAACCCAATT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
23 33 0.61
29 21 0.39
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.29
Consensus pattern (23 bp):
AAACCCTAACCTAATTTAATTAA
Found at i:32182235 original size:29 final size:29
Alignment explanation
Indices: 32182194--32182823 Score: 671
Period size: 29 Copynumber: 21.4 Consensus size: 29
32182184 AATTTGTTTT
*
32182194 AAAACCATAAACCCTAACCTAATTTAATTA
1 AAAACCCT-AACCCTAACCTAATTTAATTA
*
32182224 AAAACCCTAA-CCTCAACCCAATTT-ATT-
1 AAAACCCTAACCCT-AACCTAATTTAATTA
**
32182251 TTAA----AACCCTAACCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTA
* * *
32182276 AAAACCCTAA-CCTCAACCCAATTTATTTT
1 AAAACCCTAACCCT-AACCTAATTTAATTA
32182305 AAAACCCTAAACCCTAACCTAATTTAATTA
1 AAAACCCT-AACCCTAACCTAATTTAATTA
*
32182335 AAAACCCTAA-CCTCAACCCAATTTAATTA
1 AAAACCCTAACCCT-AACCTAATTTAATTA
* *
32182364 AAAACCCTAACCCTAACTTAATTTAATTT
1 AAAACCCTAACCCTAACCTAATTTAATTA
32182393 AAAACCCTAACCCTAACCTAACCTAATTTAATTA
1 AAAACCCTAA--C---CCTAACCTAATTTAATTA
*
32182427 AAAACGCTAACCCTAACCTAATTTAATT-
1 AAAACCCTAACCCTAACCTAATTTAATTA
*
32182455 AAAACCCTAACCCTACCCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTA
*
32182484 AAAACCCTAACCCTACCCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTA
* *
32182513 AAAACCCTAACCCTAACCTAATTTATTTT
1 AAAACCCTAACCCTAACCTAATTTAATTA
* *
32182542 AAAACCCTAAACCCTAACCTAATTTATTTT
1 AAAACCCT-AACCCTAACCTAATTTAATTA
32182572 AAAACCCTAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTA
32182601 AAAACCCTAACCCTAACCCTAATCCTAACCTAATTTA
1 AAAACCCTAACCCTAA-CCTAAT--T----TAA-TTA
** ** **
32182638 TTTTAAAACCCTAAACCCTAACCTAATTTAATTA
1 --AAAACCCTA---ACCCTAACCTAATTTAATTA
*
32182672 AAAACCCTAACCCTAATCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTA
* *
32182701 AAAACCATAACCCTAACCTGATTTAATT-
1 AAAACCCTAACCCTAACCTAATTTAATTA
*
32182729 -TAA----AACCCTAACCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTA
32182753 AAAACCCTAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTA
*
32182782 AAAACCCTAAACCCTAACTTAATTTAATTA
1 AAAACCCT-AACCCTAACCTAATTTAATTA
32182812 AAAACCCTAACC
1 AAAACCCTAACC
32182824 ATTAACAAAA
Statistics
Matches: 513, Mismatches: 47, Indels: 81
0.80 0.07 0.13
Matches are distributed among these distances:
23 30 0.06
24 6 0.01
25 4 0.01
27 4 0.01
28 38 0.07
29 273 0.53
30 95 0.19
31 4 0.01
32 5 0.01
34 28 0.05
35 3 0.01
36 3 0.01
37 3 0.01
39 4 0.01
41 6 0.01
42 7 0.01
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.29
Consensus pattern (29 bp):
AAAACCCTAACCCTAACCTAATTTAATTA
Found at i:32182310 original size:23 final size:23
Alignment explanation
Indices: 32182232--32182310 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 23
32182222 TAAAAACCCT
32182232 AACCTCAACCCAATTTATTTTAA
1 AACCTCAACCCAATTTATTTTAA
* **
32182255 AACC-CTAACCTAATTTAATTAAAAA
1 AACCTC-AACCCAATTT-ATT-TTAA
32182280 CCCTAACCTCAACCCAATTTATTTTAA
1 ----AACCTCAACCCAATTTATTTTAA
32182307 AACC
1 AACC
32182311 CTAAACCCTA
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
22 1 0.02
23 17 0.40
24 3 0.07
25 2 0.05
27 2 0.05
28 3 0.07
29 13 0.31
30 1 0.02
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (23 bp):
AACCTCAACCCAATTTATTTTAA
Found at i:32182322 original size:59 final size:58
Alignment explanation
Indices: 32182194--32182823 Score: 725
Period size: 59 Copynumber: 10.7 Consensus size: 58
32182184 AATTTGTTTT
* *
32182194 AAAACCATAAACCCTAACCTAATTTAATTAAAAACCCTAA-CCTCAACCCAATTT-ATT-
1 AAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAACCCT-AACCTAATTTAATTA
** * * *
32182251 TTAA----AACCCTAACCTAATTTAATTAAAAACCCTAA-CCTCAACCCAATTTATTTT
1 AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT-AACCTAATTTAATTA
*
32182305 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAA-CCTCAACCCAATTTAATTA
1 AAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAACCCT-AACCTAATTTAATTA
* *
32182364 AAAACCCTAACCCTAACTTAATTTAATTTAAAACCCTAACCCTAACCTAACCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAA--C---CCTAACCTAATTTAATTA
* *
32182427 AAAACGCTAACCCTAACCTAATTTAATT-AAAACCCTAACCCTACCCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
* * *
32182484 AAAACCCTAACCCTACCCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTATTTT
1 AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
* *
32182542 AAAACCCTAAACCCTAACCTAATTTATTTTAAAACCCTAACCCTAACCTAATTTAATTA
1 AAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
32182601 AAAACCCTAACCCTAACCCTAATCCTAACCTAATTTATTTTAAAACCCTAAACCCTAACCTAATT
1 AAAACCCTAACCCTAA-CCTAAT--T----TAA-TTA----AAAACCCT-AACCCTAACCTAATT
32182666 TAATTA
53 TAATTA
* * *
32182672 AAAACCCTAACCCTAATCTAATTTAATTAAAAACCATAACCCTAACCTGATTTAATT-
1 AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
*
32182729 -TAA----AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
1 AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
*
32182782 AAAACCCTAAACCCTAACTTAATTTAATTAAAAACCCTAACC
1 AAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAACC
32182824 ATTAACAAAA
Statistics
Matches: 504, Mismatches: 34, Indels: 68
0.83 0.06 0.11
Matches are distributed among these distances:
52 91 0.18
53 2 0.00
54 4 0.01
56 2 0.00
57 45 0.09
58 90 0.18
59 154 0.31
60 1 0.00
61 1 0.00
62 10 0.02
63 43 0.09
64 6 0.01
65 2 0.00
66 2 0.00
68 1 0.00
70 13 0.03
71 37 0.07
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.29
Consensus pattern (58 bp):
AAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
Found at i:32182563 original size:41 final size:39
Alignment explanation
Indices: 32182518--32182663 Score: 114
Period size: 30 Copynumber: 4.1 Consensus size: 39
32182508 AATTAAAAAC
32182518 CCTAACCCTAACCTAATTTATTTTAAAACCCT-A----AA
1 CCTAA-CCTAACCTAATTTATTTTAAAACCCTAACCCTAA
32182553 -C---CCTAACCTAATTTATTTTAAAACCCTAACCCTAA
1 CCTAACCTAACCTAATTTATTTTAAAACCCTAACCCTAA
*
32182588 CCTAA--T---TTAA-TTA----AAAACCCTAACCCTAA
1 CCTAACCTAACCTAATTTATTTTAAAACCCTAACCCTAA
32182617 CCCTAATCCTAACCTAATTTATTTTAAAACCCTAAACCCTAA
1 -CCTAA-CCTAACCTAATTTATTTTAAAACCCT-AACCCTAA
32182659 CCTAA
1 CCTAA
32182664 TTTAATTAAA
Statistics
Matches: 87, Mismatches: 2, Indels: 38
0.69 0.02 0.30
Matches are distributed among these distances:
29 16 0.18
30 31 0.36
31 1 0.01
33 4 0.05
34 4 0.05
35 2 0.02
36 4 0.05
37 4 0.05
41 13 0.15
42 8 0.09
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (39 bp):
CCTAACCTAACCTAATTTATTTTAAAACCCTAACCCTAA
Found at i:32182664 original size:41 final size:41
Alignment explanation
Indices: 32182574--32182664 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 41
32182564 TTTATTTTAA
*
32182574 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
1 AACCCTAATCCTAACCTAATTTAATTAAAAACCCTAACCCT
* *
32182615 AACCCTAATCCTAACCTAATTTATTTTAAAACCCTAAACCCT
1 AACCCTAATCCTAACCTAATTTAATTAAAAACCCT-AACCCT
32182657 AA-CCTAAT
1 AACCCTAAT
32182665 TTAATTAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
41 38 0.83
42 8 0.17
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.27
Consensus pattern (41 bp):
AACCCTAATCCTAACCTAATTTAATTAAAAACCCTAACCCT
Found at i:32182666 original size:71 final size:71
Alignment explanation
Indices: 32182544--32182687 Score: 263
Period size: 71 Copynumber: 2.0 Consensus size: 71
32182534 TTTATTTTAA
32182544 AACCCTAAACCCTAACCTAATTTATTTTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAAACCCTAACCTAATTTATTTTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
32182609 AACCCT
66 AACCCT
*
32182615 AACCCT-AATCCTAACCTAATTTATTTTAAAACCCTAAACCCTAACCTAATTTAATTAAAAACCC
1 AACCCTAAACCCTAACCTAATTTATTTTAAAACCCT-AACCCTAACCTAATTTAATTAAAAACCC
32182679 TAACCCT
65 TAACCCT
32182686 AA
1 AA
32182688 TCTAATTTAA
Statistics
Matches: 71, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
70 28 0.39
71 43 0.61
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (71 bp):
AACCCTAAACCCTAACCTAATTTATTTTAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
AACCCT
Found at i:32185437 original size:124 final size:123
Alignment explanation
Indices: 32185071--32185472 Score: 644
Period size: 123 Copynumber: 3.3 Consensus size: 123
32185061 CCACGAGGGC
*** * * *
32185071 GCGATTTTATACTATTTGCTCAGAAACGTCAAAATTTTTTTTTCTTACACGACCAATTGTAGCGA
1 GCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGACCAACTGTAGCGA
*
32185136 AATCGCATCCACGAGGGCACGATTTCACAATTCCTTCTCAAATAGCATCCTGGTAGAA
66 AATCGCGTCCACGAGGGCACGATTTCACAATTCCTTCTCAAATAGCATCCTGGTAGAA
*
32185194 GCGATTTTATACTATTTGCTAAGAAACGTCAAAAAAATTATTTCTTACATGACCAACTGTAGCGA
1 GCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGACCAACTGTAGCGA
*
32185259 AATCGCGTCCACGAGGGCACGATTTCACAATTCCTTCTCAAATAGCATCTTGGTAGAA
66 AATCGCGTCCACGAGGGCACGATTTCACAATTCCTTCTCAAATAGCATCCTGGTAGAA
* *
32185317 GCAATTTTATACTATTTGCTCAGTAACGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
1 GCGATTTTATACTATTTGCTCAGAAACGTC-AAAAAAATTATTTCTTACATGACCAACTGTAGCG
* * *
32185382 AAATCGCGTCCACGAGGGCACGATTTCATAATTTCTTCTCAAATAACATCCTGGTAGAA
65 AAATCGCGTCCACGAGGGCACGATTTCACAATTCCTTCTCAAATAGCATCCTGGTAGAA
*
32185441 GCGATTGTATACTATTTGAC-CAGAAACGTCAA
1 GCGATTTTATACTATTTG-CTCAGAAACGTCAA
32185473 CTCGAAATAA
Statistics
Matches: 258, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
123 143 0.55
124 114 0.44
125 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (123 bp):
GCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGACCAACTGTAGCGA
AATCGCGTCCACGAGGGCACGATTTCACAATTCCTTCTCAAATAGCATCCTGGTAGAA
Found at i:32185951 original size:19 final size:19
Alignment explanation
Indices: 32185927--32185963 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
32185917 ATAAATTTAT
*
32185927 TTTTACATATACCTACAAA
1 TTTTACATATACCAACAAA
32185946 TTTTACATATACCAACAA
1 TTTTACATATACCAACAA
32185964 TTAATTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTTACATATACCAACAAA
Found at i:32187066 original size:20 final size:20
Alignment explanation
Indices: 32187003--32187057 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
32186993 TCGTTTCCAG
32187003 CTCACTCGAGCTCAAGTCAA
1 CTCACTCGAGCTCAAGTCAA
*
32187023 CTCACTCGAGCTCAAGCCAA
1 CTCACTCGAGCTCAAGTCAA
32187043 CTCACT-GAAGCTCAA
1 CTCACTCG-AGCTCAA
32187058 TTCAGCTCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.31, C:0.36, G:0.15, T:0.18
Consensus pattern (20 bp):
CTCACTCGAGCTCAAGTCAA
Found at i:32189722 original size:48 final size:47
Alignment explanation
Indices: 32189643--32189748 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
32189633 GAGTGTCATG
*
32189643 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
32189691 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
32189739 GAAAAAGAAA
1 GAAAAAGAAA
32189749 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:32191483 original size:20 final size:20
Alignment explanation
Indices: 32191420--32191474 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
32191410 TCGTTTCCAG
32191420 CTCACTCGAGCTCAAGTCAA
1 CTCACTCGAGCTCAAGTCAA
32191440 CTCACTCGAGCTCAAGTCAA
1 CTCACTCGAGCTCAAGTCAA
32191460 CTCACT-GAAGCTCAA
1 CTCACTCG-AGCTCAA
32191475 TTCAGCTCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.31, C:0.35, G:0.15, T:0.20
Consensus pattern (20 bp):
CTCACTCGAGCTCAAGTCAA
Found at i:32193705 original size:8 final size:8
Alignment explanation
Indices: 32193692--32193716 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
32193682 GAAACTTTAA
32193692 ATTTTGTT
1 ATTTTGTT
32193700 ATTTTGTT
1 ATTTTGTT
32193708 ATTTTGTT
1 ATTTTGTT
32193716 A
1 A
32193717 GCCAACCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.72
Consensus pattern (8 bp):
ATTTTGTT
Found at i:32195346 original size:15 final size:16
Alignment explanation
Indices: 32195318--32195347 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32195308 TAAATTCATA
32195318 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
32195334 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
32195348 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:32195383 original size:120 final size:120
Alignment explanation
Indices: 32195244--32195753 Score: 921
Period size: 120 Copynumber: 4.2 Consensus size: 120
32195234 AAGTAGATTA
*
32195244 TAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
*
32195309 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAAT
66 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTAT
* * *
32195364 TAAAATACATTTAATAATAATTATTTTAAATTATATTTTATAGTATTAGATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
32195429 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTAT
66 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTAT
* *
32195484 TAAATTATACTTAATAATAATTATTTTAAATTATATTTTACAGTATTATATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
* *
32195549 AATTTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTAC
66 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTAT
*
32195604 TAAATTATAATTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
32195669 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTAT
66 AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTAT
*
32195724 TAAATTATATTTAATAATAATTATGTTAAA
1 TAAATTATATTTAATAATAATTATTTTAAA
32195754 ATATGATTAA
Statistics
Matches: 374, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 374 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (120 bp):
TAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGT
AAATTCATATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTAT
Found at i:32195466 original size:15 final size:16
Alignment explanation
Indices: 32195438--32195467 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32195428 TAAATTCATA
32195438 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
32195454 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
32195468 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:32195584 original size:15 final size:16
Alignment explanation
Indices: 32195558--32195587 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32195548 TAATTTCATA
32195558 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
32195574 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
32195588 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:32195617 original size:41 final size:40
Alignment explanation
Indices: 32195269--32195737 Score: 173
Period size: 38 Copynumber: 11.8 Consensus size: 40
32195259 AATAATTATT
* *
32195269 TTAAATTATAT-TTTATAGT-ATTATATATTATG-ATTTTA
1 TTAAATTATATATTTATAATAATTATA-ATTAAGAATTTTA
* * * *
32195307 GTAAATTCATATA---AGAATATTTATTATTAAGAATTTTA
1 TTAAATT-ATATATTTATAATAATTATAATTAAGAATTTTA
*
32195345 TTAAATTATATATTTTAATTAAAATACATT-TAA-TAATAATTATT-
1 TTAAATTATATA-TTT-A-T--AATA-ATTATAATTAAGAATT-TTA
* * *
32195389 TTAAATTATAT-TTTATAGT-ATTAGATATTATG-ATTTTA
1 TTAAATTATATATTTATAATAATTATA-ATTAAGAATTTTA
* * * *
32195427 GTAAATTCATATA---AGAATATTTATTATTAAGAATTTTA
1 TTAAATT-ATATATTTATAATAATTATAATTAAGAATTTTA
* * * * *
32195465 TTAAATTATATATTTTTATTAAATTATACTTAATAATAATTATT
1 TTAAATTATATATTTATAAT-AATTATAATTAAGAAT--TT-TA
* * *
32195509 TTAAATTATAT-TTTACAGT-ATTATATATTATG-ATTTTA
1 TTAAATTATATATTTATAATAATTATA-ATTAAGAATTTTA
* * * * *
32195547 GT-AATT-TCATA-TAAGAATATTTATTATTAAGAATTTTA
1 TTAAATTAT-ATATTTATAATAATTATAATTAAGAATTTTA
* * * *
32195585 TTAAATTATATATTTTTACTAAATTATAATTAATAATAATTATT
1 TTAAATTATATATTTATAAT-AATTATAATTAAGAAT--TT-TA
* *
32195629 TTAAATTATAT-TTTATAGT-ATTATATATTATG-ATTTTA
1 TTAAATTATATATTTATAATAATTATA-ATTAAGAATTTTA
* * * *
32195667 GTAAATTCATATA---AGAATATTTATTATTAAGAATTTTA
1 TTAAATT-ATATATTTATAATAATTATAATTAAGAATTTTA
* * *
32195705 TTAAATTATATATTTTTATTAAATTATATTTAA
1 TTAAATTATATATTTATAAT-AATTATAATTAA
32195738 TAATAATTAT
Statistics
Matches: 309, Mismatches: 72, Indels: 97
0.65 0.15 0.20
Matches are distributed among these distances:
36 4 0.01
37 57 0.18
38 85 0.28
39 25 0.08
40 9 0.03
41 51 0.17
42 11 0.04
43 15 0.05
44 42 0.14
45 8 0.03
46 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (40 bp):
TTAAATTATATATTTATAATAATTATAATTAAGAATTTTA
Found at i:32195706 original size:15 final size:16
Alignment explanation
Indices: 32195678--32195707 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32195668 TAAATTCATA
32195678 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
32195694 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
32195708 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:32195993 original size:16 final size:16
Alignment explanation
Indices: 32195974--32196004 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
32195964 CCTATTACGT
32195974 CTCTATTCCATTACAC
1 CTCTATTCCATTACAC
32195990 CTCTATTCCATTACA
1 CTCTATTCCATTACA
32196005 ACGAACCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (16 bp):
CTCTATTCCATTACAC
Found at i:32197000 original size:2 final size:2
Alignment explanation
Indices: 32196993--32197017 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32196983 AAAGAAAATC
32196993 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
32197018 TATTTTTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32199624 original size:18 final size:19
Alignment explanation
Indices: 32199590--32199636 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
32199580 CTCACAAGTG
*
32199590 AGTTTAACATCATTA-TTTA
1 AGTTTAA-ATAATTATTTTA
*
32199609 ATTTTAAATAATTATTTTA
1 AGTTTAAATAATTATTTTA
32199628 AGTTTAAAT
1 AGTTTAAAT
32199637 TTATAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (19 bp):
AGTTTAAATAATTATTTTA
Found at i:32216620 original size:15 final size:15
Alignment explanation
Indices: 32216600--32216631 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32216590 CATTTCGCTA
*
32216600 TTATGTCTTTTATAT
1 TTATGTCCTTTATAT
32216615 TTATGTCCTTTATAT
1 TTATGTCCTTTATAT
32216630 TT
1 TT
32216632 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.09, G:0.06, T:0.66
Consensus pattern (15 bp):
TTATGTCCTTTATAT
Found at i:32219006 original size:263 final size:262
Alignment explanation
Indices: 32218540--32219067 Score: 1020
Period size: 263 Copynumber: 2.0 Consensus size: 262
32218530 AAAGTTGTAG
32218540 AGAGAAAATTCTCTGAAGAGATTATTCAAAAAAATTTCTAGAGATATTTTTCTAATTTACAACTT
1 AGAGAAAATTCTCTGAAGAGATTATTCAAAAAAATTTCTAGAGATATTTTTCTAATTTACAACTT
32218605 GACCAAAAAGTTTAGTGAAATTGCACAATTACCCCACTAGTAATTTTCATGAATTTTTTTGATTC
66 GACCAAAAAGTTTAGTGAAATTGCACAATTACCCCACTAGTAATTTTCATGAATTTTTTTGATTC
*
32218670 AAAGCAAGCCTGCACTCGACAGACGTGAGCTTGAGGATAGCGGAGAAGACTACTCAATTGAAGCG
131 AAAGCAAGCCTGCACTCAACAGACGTGAGCTTGAGGATAGCGGAGAAGACTACTCAATTGAAGCG
*
32218735 CTCATCCTTGACGAATCGAAAAGGTACAATTTTGATTAAGTGTTTATTACTTTAGATATCACAAC
196 CTCATCCTTGACGAATCAAAAAGGTACAATTTTGATTAAGTGTTTATTACTTTAGATATCACAAC
32218800 CA
261 CA
32218802 AGAGAAAATTCTCTGAAGAGATTATTCAAAAAAAATTTCTAGAGATATTTTTCTAATTTACAACT
1 AGAGAAAATTCTCTGAAGAGATTATTC-AAAAAAATTTCTAGAGATATTTTTCTAATTTACAACT
32218867 TGACCAAAAAGTTTAGTGAAATTGCACAATTACCCCACTAGTAATTTTCATGAATTTTTTTGATT
65 TGACCAAAAAGTTTAGTGAAATTGCACAATTACCCCACTAGTAATTTTCATGAATTTTTTTGATT
*
32218932 CAAAGCAAGCCTGCACTCAACAGACGTGAGCTTGAGGATAGCGGAGAAGACTACTCAGTTGAAGC
130 CAAAGCAAGCCTGCACTCAACAGACGTGAGCTTGAGGATAGCGGAGAAGACTACTCAATTGAAGC
32218997 GCTCATCCTTGACGAATCAAAAAGGTACAATTTTGATTAAGTGTTTATTACTTTAGATATCACAA
195 GCTCATCCTTGACGAATCAAAAAGGTACAATTTTGATTAAGTGTTTATTACTTTAGATATCACAA
32219062 CCA
260 CCA
32219065 AGA
1 AGA
32219068 TCTTGTTTTG
Statistics
Matches: 262, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
262 27 0.10
263 235 0.90
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (262 bp):
AGAGAAAATTCTCTGAAGAGATTATTCAAAAAAATTTCTAGAGATATTTTTCTAATTTACAACTT
GACCAAAAAGTTTAGTGAAATTGCACAATTACCCCACTAGTAATTTTCATGAATTTTTTTGATTC
AAAGCAAGCCTGCACTCAACAGACGTGAGCTTGAGGATAGCGGAGAAGACTACTCAATTGAAGCG
CTCATCCTTGACGAATCAAAAAGGTACAATTTTGATTAAGTGTTTATTACTTTAGATATCACAAC
CA
Found at i:32231021 original size:50 final size:50
Alignment explanation
Indices: 32230967--32231121 Score: 168
Period size: 50 Copynumber: 3.1 Consensus size: 50
32230957 CGGGGAAGTG
* *
32230967 AGATTTGCTGTTGTAGCTTCAATCTGTTCCACTGCATCGCCTGGGAGGTA
1 AGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCATCGCCTGGGAGGTA
* ** * * * *
32231017 AGATTCGCTGTTGTAGCTTTAATCTTTTGAACTGCAAT-GTCAGGGAAGCA
1 AGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGC-ATCGCCTGGGAGGTA
* * * *
32231067 AGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGCCTGGGGAGATA
1 AGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCATCGCCT-GGGAGGTA
32231118 AGAT
1 AGAT
32231122 CTGTAATTCT
Statistics
Matches: 82, Mismatches: 20, Indels: 5
0.77 0.19 0.05
Matches are distributed among these distances:
49 2 0.02
50 69 0.84
51 11 0.13
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (50 bp):
AGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCATCGCCTGGGAGGTA
Found at i:32231271 original size:43 final size:44
Alignment explanation
Indices: 32231219--32231455 Score: 151
Period size: 44 Copynumber: 5.2 Consensus size: 44
32231209 CCTTTATTTT
* *
32231219 AATCCGCTCCACT-TAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
32231262 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
32231306 AATCTGATGCGATCTACTCTACTGTAA-CTTCAGAGAGATAATATCCT-TTA-TTTT
1 AATC---T--G--CT-C-C-ACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * *
32231360 AAT-TCGCTCTACTGTAATCTCAAGGAGATAGGATTACTAGCTTC
1 AATCT-GCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
32231404 AATCTGCTCCGCTGTAATCTCAAGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
32231448 AATCTGCT
1 AATCTGCT
32231456 TCCTTAGACT
Statistics
Matches: 149, Mismatches: 27, Indels: 35
0.71 0.13 0.17
Matches are distributed among these distances:
42 1 0.01
43 13 0.09
44 95 0.64
45 2 0.01
46 1 0.01
47 3 0.02
49 3 0.02
50 1 0.01
51 2 0.01
52 1 0.01
53 2 0.01
54 23 0.15
55 1 0.01
56 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:32231431 original size:142 final size:141
Alignment explanation
Indices: 32231171--32231453 Score: 485
Period size: 142 Copynumber: 2.0 Consensus size: 141
32231161 ATAAGACCTA
*
32231171 ATGCGATCAACTCTACTGTAACTTCAGATAGATAAGATCCTTTATTTTAATCCGCTCCACTTAAT
1 ATGCGATCAACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTTAAT
* * *
32231236 CTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTTCTG
66 CTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATTTCTG
32231301 GCTTCAATCTG
131 GCTTCAATCTG
* * * *
32231312 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATTCGCTCTACTGTAA
1 ATGCGATCAACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACT-TAA
32231377 TCTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATTTCT
65 TCTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATTTCT
32231442 GGCTTCAATCTG
130 GGCTTCAATCTG
32231454 CTTCCTTAGA
Statistics
Matches: 133, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
141 56 0.42
142 77 0.58
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (141 bp):
ATGCGATCAACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTTAAT
CTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATTTCTG
GCTTCAATCTG
Found at i:32248935 original size:25 final size:25
Alignment explanation
Indices: 32248872--32248981 Score: 77
Period size: 25 Copynumber: 4.4 Consensus size: 25
32248862 CACACCACAG
* * *
32248872 CTCGTATGAGCTTACCGA-TGTCAG
1 CTCGTATGAGCTTACTGATTCTCAA
*
32248896 CTCGTGA-AAGCTTACTGATTCTCAA
1 CTCGT-ATGAGCTTACTGATTCTCAA
* * *
32248921 CTCGTATGAGGTTACCGATT-TCTAG
1 CTCGTATGAGCTTACTGATTCTC-AA
*
32248946 CTCGTGA-GAGCATACTGATTCAT-AA
1 CTCGT-ATGAGCTTACTGATTC-TCAA
32248971 CTCGTATGAGC
1 CTCGTATGAGC
32248982 ATACATGTAC
Statistics
Matches: 66, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
24 18 0.27
25 46 0.70
26 1 0.02
27 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.31
Consensus pattern (25 bp):
CTCGTATGAGCTTACTGATTCTCAA
Found at i:32248966 original size:50 final size:49
Alignment explanation
Indices: 32248872--32248981 Score: 159
Period size: 50 Copynumber: 2.2 Consensus size: 49
32248862 CACACCACAG
*
32248872 CTCGTATGAGCTTACCGATGTCAGCTCGTGAAAGCTTACTGATTC-TCAA
1 CTCGTATGAGCTTACCGATGTCAGCTCGTGAAAGCATACTGATTCAT-AA
* * *
32248921 CTCGTATGAGGTTACCGATTTCTAGCTCGTGAGAGCATACTGATTCATAA
1 CTCGTATGAGCTTACCGATGTC-AGCTCGTGAAAGCATACTGATTCATAA
32248971 CTCGTATGAGC
1 CTCGTATGAGC
32248982 ATACATGTAC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
49 20 0.37
50 33 0.61
51 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.31
Consensus pattern (49 bp):
CTCGTATGAGCTTACCGATGTCAGCTCGTGAAAGCATACTGATTCATAA
Found at i:32269596 original size:57 final size:57
Alignment explanation
Indices: 32269508--32269615 Score: 189
Period size: 57 Copynumber: 1.9 Consensus size: 57
32269498 GTCATTAGGG
* *
32269508 TGTTACATTTTCCAAGCACTCTGTGCCAGTGATATATTTCCAGGTACTATGGAACGA
1 TGTTACAGTTTCCAAGCACTCTGTGCAAGTGATATATTTCCAGGTACTATGGAACGA
*
32269565 TGTTACAGTTTCCAAGCACTCTGTGCAAGTGATATATTTTCAGGTACTATG
1 TGTTACAGTTTCCAAGCACTCTGTGCAAGTGATATATTTCCAGGTACTATG
32269616 TACCGGTGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (57 bp):
TGTTACAGTTTCCAAGCACTCTGTGCAAGTGATATATTTCCAGGTACTATGGAACGA
Found at i:32269605 original size:29 final size:29
Alignment explanation
Indices: 32269514--32269605 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
32269504 AGGGTGTTAC
*
32269514 ATTTTCCAAGCACTCTGTGCCAGTGATAT
1 ATTTTCCAAGCACTCTGTGCAAGTGATAT
* * * * *
32269543 A-TTTCCAGGTACTATG-G-AACGATGTTAC
1 ATTTTCCAAGCACTCTGTGCAA-G-TGATAT
*
32269571 AGTTTCCAAGCACTCTGTGCAAGTGATAT
1 ATTTTCCAAGCACTCTGTGCAAGTGATAT
32269600 ATTTTC
1 ATTTTC
32269606 AGGTACTATG
Statistics
Matches: 46, Mismatches: 12, Indels: 10
0.68 0.18 0.15
Matches are distributed among these distances:
26 1 0.02
27 2 0.04
28 17 0.37
29 22 0.48
30 2 0.04
31 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (29 bp):
ATTTTCCAAGCACTCTGTGCAAGTGATAT
Found at i:32278995 original size:21 final size:18
Alignment explanation
Indices: 32278968--32279027 Score: 66
Period size: 20 Copynumber: 3.1 Consensus size: 18
32278958 TTTTATTTTT
32278968 AATTAAAAAATATAAATATA
1 AATT-AAAAATATAAAT-TA
32278988 ACATTAAAAATATTAAATTA
1 A-ATTAAAAATA-TAAATTA
* *
32279008 AATTAATAATATAAACTA
1 AATTAAAAATATAAATTA
32279026 AA
1 AA
32279028 ATTTACACTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 8 0.22
19 9 0.25
20 11 0.31
21 8 0.22
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
AATTAAAAATATAAATTA
Found at i:32279013 original size:19 final size:21
Alignment explanation
Indices: 32278968--32279020 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
32278958 TTTTATTTTT
32278968 AATTAAAAA-ATATAAATATA
1 AATTAAAAATATATAAATATA
32278988 ACATTAAAAATAT-TAAAT-TA
1 A-ATTAAAAATATATAAATATA
*
32279008 AATTAATAATATA
1 AATTAAAAATATA
32279021 AACTAAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 10 0.34
20 4 0.14
21 13 0.45
22 2 0.07
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
AATTAAAAATATATAAATATA
Found at i:32279029 original size:19 final size:18
Alignment explanation
Indices: 32278968--32279030 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 18
32278958 TTTTATTTTT
32278968 AATTAAAAAATATAAATATA
1 AATT-AAAAATATAAATA-A
*
32278988 ACATTAAAAATATTAAATTA
1 A-ATTAAAAATA-TAAATAA
*
32279008 AATTAATAATATAAACTAA
1 AATTAAAAATATAAA-TAA
32279027 AATT
1 AATT
32279031 TACACTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
18 4 0.11
19 15 0.41
20 10 0.27
21 8 0.22
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
AATTAAAAATATAAATAA
Found at i:32280945 original size:17 final size:17
Alignment explanation
Indices: 32280918--32280963 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 17
32280908 AAAGTTTAGG
32280918 GGGGAAATAAAAAGTTTT
1 GGGGAAAT-AAAAGTTTT
32280936 GGGG-AATAAAAG-TTT
1 GGGGAAATAAAAGTTTT
32280951 GAGGGAAAGTAAA
1 G-GGGAAA-TAAA
32280964 TAGGGGGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 4 0.16
16 8 0.32
17 5 0.20
18 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.33, T:0.22
Consensus pattern (17 bp):
GGGGAAATAAAAGTTTT
Found at i:32281269 original size:30 final size:30
Alignment explanation
Indices: 32281208--32281269 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
32281198 GGGGGGAGAG
* ***
32281208 GAGTAAAAGTTTTGGGGGAAAAGTGGGAAA
1 GAGTAAAAGTTTTGAGGGAAAAGTAAAAAA
32281238 GAGTAAAAGTTTTGAGGGAAAAGTAAAAAA
1 GAGTAAAAGTTTTGAGGGAAAAGTAAAAAA
32281268 GA
1 GA
32281270 TTGGGAGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.34, T:0.19
Consensus pattern (30 bp):
GAGTAAAAGTTTTGAGGGAAAAGTAAAAAA
Found at i:32281324 original size:9 final size:9
Alignment explanation
Indices: 32281310--32281346 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
32281300 TATAGTTTGA
32281310 TATTCGAAT
1 TATTCGAAT
32281319 TATTCGAAT
1 TATTCGAAT
*
32281328 TATTCGAGT
1 TATTCGAAT
32281337 TATTCGAAT
1 TATTCGAAT
32281346 T
1 T
32281347 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32283507 original size:9 final size:9
Alignment explanation
Indices: 32283495--32283563 Score: 52
Period size: 9 Copynumber: 7.4 Consensus size: 9
32283485 AAAATCGTAA
32283495 AAAATATTT
1 AAAATATTT
*
32283504 AAAAATATAT
1 -AAAATATTT
32283514 AAAA-ATTGT
1 AAAATATT-T
32283523 GAAAATATTT
1 -AAAATATTT
* *
32283533 AAATTATTA
1 AAAATATTT
32283542 AAAAT-TTT
1 AAAATATTT
*
32283550 AAAAATTTTT
1 -AAAATATTT
32283560 AAAA
1 AAAA
32283564 AAATTAAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
8 4 0.08
9 25 0.52
10 16 0.33
11 3 0.06
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (9 bp):
AAAATATTT
Found at i:32283507 original size:10 final size:10
Alignment explanation
Indices: 32283494--32283564 Score: 69
Period size: 10 Copynumber: 7.5 Consensus size: 10
32283484 TAAAATCGTA
32283494 AAAAATATTT
1 AAAAATATTT
*
32283504 AAAAATATAT
1 AAAAATATTT
*
32283514 AAAAAT-TGT
1 AAAAATATTT
*
32283523 GAAAATATTT
1 AAAAATATTT
*
32283533 -AAATTA-TT
1 AAAAATATTT
32283541 AAAAAT-TTT
1 AAAAATATTT
*
32283550 AAAAATTTTT
1 AAAAATATTT
32283560 AAAAA
1 AAAAA
32283565 AATTAAATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
8 2 0.04
9 24 0.47
10 25 0.49
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (10 bp):
AAAAATATTT
Found at i:32283508 original size:29 final size:29
Alignment explanation
Indices: 32283476--32283535 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
32283466 AAAAAATTGT
*
32283476 AAAA-AAATTAAAATCGTAAAAAATATTTA
1 AAAATAAATAAAAATCGT-AAAAATATTTA
* * *
32283505 AAAATATATAAAAATTGTGAAAATATTTA
1 AAAATAAATAAAAATCGTAAAAATATTTA
32283534 AA
1 AA
32283536 TTATTAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (29 bp):
AAAATAAATAAAAATCGTAAAAATATTTA
Found at i:32283570 original size:19 final size:19
Alignment explanation
Indices: 32283494--32283604 Score: 75
Period size: 19 Copynumber: 5.7 Consensus size: 19
32283484 TAAAATCGTA
*
32283494 AAAAATATTTAAAAATATAT
1 AAAAATTTTTAAAAATAT-T
* *
32283514 AAAAA-TTGTGAAAATATT
1 AAAAATTTTTAAAAATATT
* * *
32283532 -TAAATTATTAAAAATTTT
1 AAAAATTTTTAAAAATATT
*
32283550 AAAAATTTTTAAAAAAATT
1 AAAAATTTTTAAAAATATT
* *
32283569 -AAATTTTTGTCAATAATTATT
1 AAAAATTTT-T-AA-AAATATT
32283590 AAAAATATTTTAAAA
1 AAAAAT-TTTTAAAA
32283605 TTGTAAAAAG
Statistics
Matches: 68, Mismatches: 16, Indels: 14
0.69 0.16 0.14
Matches are distributed among these distances:
17 3 0.04
18 17 0.25
19 24 0.35
20 9 0.13
21 7 0.10
22 5 0.07
23 3 0.04
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.41
Consensus pattern (19 bp):
AAAAATTTTTAAAAATATT
Found at i:32283613 original size:19 final size:19
Alignment explanation
Indices: 32283583--32283632 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
32283573 TTTTGTCAAT
* *
32283583 AATTATTAAAAATATTTTAA
1 AATTA-TAAAAAGATATTAA
* *
32283603 AATTGTAAAAAGCTATTAA
1 AATTATAAAAAGATATTAA
32283622 AATTATAAAAA
1 AATTATAAAAA
32283633 AAATTATTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (19 bp):
AATTATAAAAAGATATTAA
Found at i:32283633 original size:10 final size:10
Alignment explanation
Indices: 32283583--32283686 Score: 58
Period size: 10 Copynumber: 10.4 Consensus size: 10
32283573 TTTTGTCAAT
32283583 AATTATTAAA
1 AATTATTAAA
*
32283593 AA-TATTTTAA
1 AATTA-TTAAA
*
32283603 AATT-GTAAA
1 AATTATTAAA
*
32283612 AAGCTATT-AA
1 AA-TTATTAAA
*
32283622 AATTATAAAAAA
1 AATTAT--TAAA
32283634 AATTATTTAAA
1 AATTA-TTAAA
*
32283645 TATT-TT-AA
1 AATTATTAAA
32283653 AATTATTAAA
1 AATTATTAAA
*
32283663 AATCA-TAAA
1 AATTATTAAA
32283672 TAATTATTAAA
1 -AATTATTAAA
32283683 AATT
1 AATT
32283687 TGTAAATAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 24
0.66 0.11 0.23
Matches are distributed among these distances:
8 5 0.07
9 18 0.26
10 27 0.39
11 12 0.17
12 7 0.10
13 1 0.01
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (10 bp):
AATTATTAAA
Found at i:32283677 original size:51 final size:51
Alignment explanation
Indices: 32283583--32283684 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 51
32283573 TTTTGTCAAT
*
32283583 AATTATTAAAAATATTTTAAAATTGTAAAAAGCTATTAAAATTATAAAAAA
1 AATTATTAAAAATATTTTAAAATTGTAAAAAGCTATAAAAATTATAAAAAA
* * * *
32283634 AATTATT-TAAATATTTTAAAATTATTAAAAATC-ATAAATAATTATTAAAAA
1 AATTATTAAAAATATTTTAAAATT-GTAAAAAGCTATAAA-AATTATAAAAAA
32283685 TTTGTAAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
50 19 0.43
51 25 0.57
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (51 bp):
AATTATTAAAAATATTTTAAAATTGTAAAAAGCTATAAAAATTATAAAAAA
Found at i:32283946 original size:20 final size:21
Alignment explanation
Indices: 32283921--32283970 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
32283911 TCACCGGTTC
32283921 ACAATTTTCAAATAATT-TTT
1 ACAATTTTCAAATAATTATTT
**
32283941 ACAATTTTTTAATAATTATTT
1 ACAATTTTCAAATAATTATTT
32283962 A-AACTTTTC
1 ACAA-TTTTC
32283971 TTACATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (21 bp):
ACAATTTTCAAATAATTATTT
Found at i:32290044 original size:50 final size:50
Alignment explanation
Indices: 32289884--32290180 Score: 222
Period size: 50 Copynumber: 5.8 Consensus size: 50
32289874 GATAATAACA
* * ** * **
32289884 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTC-T-TGCAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCT-CGG
* ** * * * * ** *
32289933 TGCAAATTCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
32289983 TGCCCATGCCATGTCCCAGACATGGTTTTAC-GGGTGACCTCTCGTCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGG-GACCTCTCATCTCGG
* *
32290033 TGCCAACGCCATGTCCCAGACATTGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * * * *
32290083 TGCAAACACCATGTCCCAGACATGGTCTTACATGAGACATCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGAC--CTC-TCATCTC---GG
* *
32290139 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
32290181 TTACCCAAAT
Statistics
Matches: 199, Mismatches: 39, Indels: 16
0.78 0.15 0.06
Matches are distributed among these distances:
49 36 0.18
50 112 0.56
51 3 0.02
52 3 0.02
53 7 0.04
54 3 0.02
56 35 0.18
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:32290077 original size:100 final size:103
Alignment explanation
Indices: 32289954--32290180 Score: 262
Period size: 100 Copynumber: 2.2 Consensus size: 103
32289944 TATCCTAGAT
** ** ** * * *
32289954 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGACATGGTTTTACGGGTG
1 ATGGTCTTACATGGGACCTCTCATATCGGTGCAAACACCATGTCCCAGACATGGTCTTACAGGAG
** *
32290019 AC-CTC-TCGTCTC-GGTGCCAACGCCATGTCCCAGAC
66 ACACTCATAATCTCAGATGCCAACGCCATGTCCCAGAC
* * *
32290054 ATTGTCTTACATGGGACCTCTCATCTCGGTGCAAACACCATGTCCCAGACATGGTCTTACATGAG
1 ATGGTCTTACATGGGACCTCTCATATCGGTGCAAACACCATGTCCCAGACATGGTCTTACAGGAG
32290119 ACATCTCATAATCTCAATGATGCCAACGCCATGTCCCAGAC
66 ACA-CTCATAATCTC-A-GATGCCAACGCCATGTCCCAGAC
*
32290160 ATGGTCTTACATGGGATCTCT
1 ATGGTCTTACATGGGACCTCT
32290181 TTACCCAAAT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
100 55 0.53
102 3 0.03
103 5 0.05
106 41 0.39
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (103 bp):
ATGGTCTTACATGGGACCTCTCATATCGGTGCAAACACCATGTCCCAGACATGGTCTTACAGGAG
ACACTCATAATCTCAGATGCCAACGCCATGTCCCAGAC
Found at i:32294149 original size:9 final size:9
Alignment explanation
Indices: 32294135--32294165 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32294125 AGTTAACGAA
32294135 TCGAGTTAT
1 TCGAGTTAT
*
32294144 TCGAGTTAA
1 TCGAGTTAT
32294153 TCGAGTTAT
1 TCGAGTTAT
32294162 TCGA
1 TCGA
32294166 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:32294236 original size:9 final size:9
Alignment explanation
Indices: 32294222--32294264 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
32294212 GTTTTTGAAT
32294222 TCGAATAAC
1 TCGAATAAC
*
32294231 TCGAATAAT
1 TCGAATAAC
32294240 TCGAATAAC
1 TCGAATAAC
*
32294249 TCGAATAAT
1 TCGAATAAC
32294258 TCGAATA
1 TCGAATA
32294265 TCAAACTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (9 bp):
TCGAATAAC
Found at i:32294240 original size:18 final size:18
Alignment explanation
Indices: 32294219--32294264 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
32294209 TGAGTTTTTG
32294219 AATTCGAATAACTCGAAT
1 AATTCGAATAACTCGAAT
32294237 AATTCGAATAACTCGAAT
1 AATTCGAATAACTCGAAT
32294255 AATTCGAATA
1 AATTCGAATA
32294265 TCAAACTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (18 bp):
AATTCGAATAACTCGAAT
Found at i:32294510 original size:29 final size:31
Alignment explanation
Indices: 32294478--32294536 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
32294468 AAACTTTTTA
32294478 TTTTTCCC-AAAATTTTTAGTCCC-TCCCAC
1 TTTTTCCCTAAAATTTTTAGTCCCTTCCCAC
*
32294507 TTTTTCCCTAAAATTTTTATTCCCTTCCCA
1 TTTTTCCCTAAAATTTTTAGTCCCTTCCCA
32294537 TCCCACCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 8 0.30
30 14 0.52
31 5 0.19
ACGTcount: A:0.20, C:0.32, G:0.02, T:0.46
Consensus pattern (31 bp):
TTTTTCCCTAAAATTTTTAGTCCCTTCCCAC
Found at i:32294644 original size:17 final size:17
Alignment explanation
Indices: 32294617--32294677 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
32294607 ACTCTCCCTA
32294617 TTTACTTTCCCTCAAACT
1 TTTACTTTCCC-CAAACT
*
32294635 TTTA-TTTCCCAAAACTT
1 TTTACTTTCCCCAAAC-T
*
32294652 TTTATTTTCCCCCTAAACT
1 TTTACTTT-CCCC-AAACT
32294671 TTTACTT
1 TTTACTT
32294678 CTCACCCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
16 4 0.11
17 11 0.31
18 7 0.19
19 10 0.28
20 4 0.11
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTACTTTCCCCAAACT
Found at i:32298132 original size:27 final size:27
Alignment explanation
Indices: 32298092--32298161 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
32298082 TTTATCATAT
*
32298092 ATACTATCCATTCAGAGTGT-GCCAAAC
1 ATACTATCCCTTCAGAGT-TCGCCAAAC
*
32298119 ATACTATCCCTTCAGAGTTCGCCATAC
1 ATACTATCCCTTCAGAGTTCGCCAAAC
32298146 ATACTATCCCTTCAGA
1 ATACTATCCCTTCAGA
32298162 TGGTTGCCAC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 1 0.03
27 39 0.98
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.29
Consensus pattern (27 bp):
ATACTATCCCTTCAGAGTTCGCCAAAC
Found at i:32298310 original size:28 final size:28
Alignment explanation
Indices: 32298217--32298316 Score: 103
Period size: 28 Copynumber: 3.6 Consensus size: 28
32298207 CTTTCATCAT
* * * *
32298217 TTGCCACAAAGGCTTTCCTTCCCTTAGA
1 TTGCCACAAAGGCTTTCCATCTCATATA
*
32298245 TCGCCACAAAGGC-TTCCATCTCATATA
1 TTGCCACAAAGGCTTTCCATCTCATATA
* * * *
32298272 TTGCCATAAAGGCTTTTCGTTTCATATA
1 TTGCCACAAAGGCTTTCCATCTCATATA
*
32298300 TTTCCACAAAGGCTTTC
1 TTGCCACAAAGGCTTTC
32298317 ATTTTTTAGC
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 21 0.36
28 37 0.64
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (28 bp):
TTGCCACAAAGGCTTTCCATCTCATATA
Found at i:32310164 original size:25 final size:25
Alignment explanation
Indices: 32310136--32310217 Score: 101
Period size: 25 Copynumber: 3.3 Consensus size: 25
32310126 AGCTCGTGTG
32310136 AGCATACCGATTTACAGCTCATAAA
1 AGCATACCGATTTACAGCTCATAAA
** * * *
32310161 AGCATATTGATCTACAACTCATAAG
1 AGCATACCGATTTACAGCTCATAAA
* *
32310186 AGCATACCGATTCACAGCTCATATA
1 AGCATACCGATTTACAGCTCATAAA
32310211 AGCATAC
1 AGCATAC
32310218 ATGTAAAGGA
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (25 bp):
AGCATACCGATTTACAGCTCATAAA
Found at i:32322322 original size:3 final size:3
Alignment explanation
Indices: 32322314--32322348 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
32322304 ATACTTGCAT
32322314 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
32322349 TAGGAATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:32344669 original size:11 final size:11
Alignment explanation
Indices: 32344635--32344675 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
32344625 ATCTTTCATG
32344635 AAAAC-TTAAC
1 AAAACTTTAAC
*
32344645 AAAACCTTAA-
1 AAAACTTTAAC
*
32344655 AAAATTTTAAC
1 AAAACTTTAAC
32344666 AAAACTTTAA
1 AAAACTTTAA
32344676 AAAGAGTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 13 0.50
11 13 0.50
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.27
Consensus pattern (11 bp):
AAAACTTTAAC
Found at i:32350667 original size:17 final size:18
Alignment explanation
Indices: 32350645--32350684 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
32350635 TGGAGGAGTT
32350645 AGAATCCTTAGTCTCTA-
1 AGAATCCTTAGTCTCTAC
32350662 AGAATCCTTAGTCTCTAC
1 AGAATCCTTAGTCTCTAC
32350680 AGAAT
1 AGAAT
32350685 GGGAGTGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (18 bp):
AGAATCCTTAGTCTCTAC
Found at i:32354647 original size:21 final size:21
Alignment explanation
Indices: 32354623--32354690 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
32354613 TCATAGGAGC
32354623 TAAACGAAAACCCAAAAGGGT
1 TAAACGAAAACCCAAAAGGGT
* * * *
32354644 TAAACTG-AAGCTCAAAAGAGC
1 TAAAC-GAAAACCCAAAAGGGT
* **
32354665 TGAACGAAAACCCATTAGGGT
1 TAAACGAAAACCCAAAAGGGT
32354686 TAAAC
1 TAAAC
32354691 TAATACTCAT
Statistics
Matches: 33, Mismatches: 12, Indels: 4
0.67 0.24 0.08
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.15
Consensus pattern (21 bp):
TAAACGAAAACCCAAAAGGGT
Found at i:32354691 original size:42 final size:42
Alignment explanation
Indices: 32354587--32354691 Score: 138
Period size: 42 Copynumber: 2.5 Consensus size: 42
32354577 GTGATAAGCA
* * * * *
32354587 AAAACCCGTAAGGGTTGAACGGAAGCTCATAGGAGCTAAACG
1 AAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTAAACG
* *
32354629 AAAACCCAAAAGGGTTAAACTGAAGCTCAAAAGAGCTGAACG
1 AAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTAAACG
*
32354671 AAAACCCATTAGGGTTAAACT
1 AAAACCCATAAGGGTTAAACT
32354692 AATACTCATA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.15
Consensus pattern (42 bp):
AAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTAAACG
Found at i:32359154 original size:6 final size:6
Alignment explanation
Indices: 32359143--32359168 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
32359133 TAATAAACCC
32359143 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
32359169 AATTAATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:32368317 original size:6 final size:6
Alignment explanation
Indices: 32368295--32368360 Score: 57
Period size: 6 Copynumber: 11.3 Consensus size: 6
32368285 AAAAAAGAAT
* * **
32368295 GAAAAA GAACAA G-AAAA GAAAAA CAAAAAA GAAAAA GAAATT GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA -GAAAAA GAAAAA GAAAAA GAAAAA
*
32368343 -AAAAA GAAAGA -AAAAA GA
1 GAAAAA GAAAAA GAAAAA GA
32368361 GAGCGGGCAA
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
5 13 0.28
6 28 0.61
7 5 0.11
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:32368323 original size:24 final size:24
Alignment explanation
Indices: 32368296--32368351 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
32368286 AAAAAGAATG
*
32368296 AAAAAGAACAAGAAA-AGAAAAACA
1 AAAAAGAAAAAGAAATAGAAAAA-A
*
32368320 AAAAAGAAAAAGAAATTG-AAAAA
1 AAAAAGAAAAAGAAATAGAAAAAA
32368343 AAAAAGAAA
1 AAAAAGAAA
32368352 GAAAAAAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 10 0.34
24 18 0.62
25 1 0.03
ACGTcount: A:0.80, C:0.04, G:0.12, T:0.04
Consensus pattern (24 bp):
AAAAAGAAAAAGAAATAGAAAAAA
Found at i:32368326 original size:13 final size:14
Alignment explanation
Indices: 32368302--32368330 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32368292 AATGAAAAAG
32368302 AACAAGAAAAGAAA
1 AACAAGAAAAGAAA
32368316 AACAA-AAAAGAAA
1 AACAAGAAAAGAAA
32368329 AA
1 AA
32368331 GAAATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (14 bp):
AACAAGAAAAGAAA
Found at i:32368351 original size:11 final size:11
Alignment explanation
Indices: 32368296--32368360 Score: 58
Period size: 11 Copynumber: 5.6 Consensus size: 11
32368286 AAAAAGAATG
*
32368296 AAAAAGAACAA
1 AAAAAGAAAAA
*
32368307 GAAAAGAAAAACA
1 AAAAAG-AAAA-A
32368320 AAAAAGAAAAA
1 AAAAAGAAAAA
**
32368331 GAAATTGAAAAA
1 -AAAAAGAAAAA
*
32368343 AAAAAGAAAGA
1 AAAAAGAAAAA
32368354 AAAAAGA
1 AAAAAGA
32368361 GAGCGGGCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 21 0.49
12 16 0.37
13 6 0.14
ACGTcount: A:0.80, C:0.03, G:0.14, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:32376887 original size:33 final size:33
Alignment explanation
Indices: 32376864--32376932 Score: 97
Period size: 31 Copynumber: 2.1 Consensus size: 33
32376854 AGATTCAATA
*
32376864 AAATTTAAGATAAAAATTTTAAAAATTAATATAT
1 AAATATAA-ATAAAAATTTTAAAAATTAATATAT
*
32376898 AAATATAAATACAAATTTT-AAAA-TAATATAT
1 AAATATAAATAAAAATTTTAAAAATTAATATAT
32376929 AAAT
1 AAAT
32376933 TTATTTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 12 0.36
32 4 0.12
33 10 0.30
34 7 0.21
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (33 bp):
AAATATAAATAAAAATTTTAAAAATTAATATAT
Found at i:32376892 original size:21 final size:21
Alignment explanation
Indices: 32376862--32376901 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32376852 AAAGATTCAA
*
32376862 TAAAATTTAAGATAAAAATTT
1 TAAAAATTAAGATAAAAATTT
* *
32376883 TAAAAATTAATATATAAAT
1 TAAAAATTAAGATAAAAAT
32376902 ATAAATACAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
TAAAAATTAAGATAAAAATTT
Found at i:32376932 original size:19 final size:19
Alignment explanation
Indices: 32376897--32376934 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32376887 AATTAATATA
32376897 TAAATATAAATACAAATTT
1 TAAATATAAATACAAATTT
*
32376916 TAAA-ATAATATATAAATTT
1 TAAATATAA-ATACAAATTT
32376935 ATTTAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAATATAAATACAAATTT
Found at i:32377234 original size:28 final size:27
Alignment explanation
Indices: 32377189--32377242 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
32377179 ATTTTATTTT
32377189 CAAAAAAATAATAATTTTAAAAAATTG
1 CAAAAAAATAATAATTTTAAAAAATTG
* *
32377216 CAAAAAAGTATATAGTTTTAAAAAATT
1 CAAAAAAATA-ATAATTTTAAAAAATT
32377243 TTATATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (27 bp):
CAAAAAAATAATAATTTTAAAAAATTG
Found at i:32381226 original size:24 final size:25
Alignment explanation
Indices: 32381168--32381228 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 25
32381158 AAGAAAGAAA
* *
32381168 AAAATTTAAATAAAAATATAATTACG
1 AAAATTT-AAGAAAAATATAATAACG
* *
32381194 AAAA-CTAAGAAAAA-ATAATAACT
1 AAAATTTAAGAAAAATATAATAACG
32381217 AAAATTTAAGAA
1 AAAATTTAAGAA
32381229 TTTCCTATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
23 11 0.38
24 13 0.45
25 1 0.03
26 4 0.14
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (25 bp):
AAAATTTAAGAAAAATATAATAACG
Found at i:32391146 original size:27 final size:28
Alignment explanation
Indices: 32391116--32391169 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
32391106 GAAGAAATAA
32391116 AGAA-AAAATAAAAAT-ATATTCTAAAAG
1 AGAATAAAA-AAAAATGATATTCTAAAAG
* *
32391143 AGAATAAAAGAAAATGCTATTCTAAAA
1 AGAATAAAAAAAAATGATATTCTAAAA
32391170 ATAAGAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.63, C:0.06, G:0.09, T:0.22
Consensus pattern (28 bp):
AGAATAAAAAAAAATGATATTCTAAAAG
Found at i:32399039 original size:41 final size:40
Alignment explanation
Indices: 32398992--32399110 Score: 118
Period size: 37 Copynumber: 3.0 Consensus size: 40
32398982 TTCGACTTCG
* *
32398992 AGTCGATAAGACACTAGGTGTCAATTTACTACTTCGGATTA
1 AGTCGATGAGACACTGGGTGTCAATTTA-TACTTCGGATTA
* * * * *
32399033 ATTCGATGAGGCATTGGGTGCCAA-TT-TACTTCGG-TTT
1 AGTCGATGAGACACTGGGTGTCAATTTATACTTCGGATTA
* *
32399070 AGCCGATGAGACACTGGGTGTCAATTTATTACTTCGAATTA
1 AGTCGATGAGACACTGGGTGTCAATTTA-TACTTCGGATTA
32399111 TCCGGTAAGG
Statistics
Matches: 60, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
37 21 0.35
38 10 0.17
40 9 0.15
41 20 0.33
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (40 bp):
AGTCGATGAGACACTGGGTGTCAATTTATACTTCGGATTA
Found at i:32399125 original size:40 final size:40
Alignment explanation
Indices: 32398995--32399126 Score: 117
Period size: 40 Copynumber: 3.4 Consensus size: 40
32398985 GACTTCGAGT
* * *
32398995 CGATAAGACACTAGGTGTCAATTTACTACTTCGGATTAATT
1 CGATAAGACACTGGGTGTCAATTTATTACTTCGGATT-ATC
* * * * * *
32399036 CGATGAGGCATTGGGTGCCAA--T-TTACTTCGGTTTAGC
1 CGATAAGACACTGGGTGTCAATTTATTACTTCGGATTATC
* *
32399073 CGATGAGACACTGGGTGTCAATTTATTACTTCGAATTATC
1 CGATAAGACACTGGGTGTCAATTTATTACTTCGGATTATC
* *
32399113 CGGTAAGGCACTGG
1 CGATAAGACACTGG
32399127 ATGCCAAACT
Statistics
Matches: 70, Mismatches: 18, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
37 19 0.27
38 10 0.14
39 2 0.03
40 23 0.33
41 16 0.23
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (40 bp):
CGATAAGACACTGGGTGTCAATTTATTACTTCGGATTATC
Found at i:32399262 original size:19 final size:19
Alignment explanation
Indices: 32399238--32399277 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
32399228 TGATATTATA
32399238 TGTGAAATGAAA-ATGGGAT
1 TGTGAAATGAAATAT-GGAT
*
32399257 TGTGAATTGAAATATGGAT
1 TGTGAAATGAAATATGGAT
32399276 TG
1 TG
32399278 AGGCACATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 17 0.89
20 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.30, T:0.33
Consensus pattern (19 bp):
TGTGAAATGAAATATGGAT
Found at i:32402773 original size:17 final size:17
Alignment explanation
Indices: 32402751--32402792 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
32402741 AATAATTATT
32402751 TAATTTAATATTTA-TAA
1 TAATTTAAT-TTTATTAA
32402768 TAATTT-ATTTTATTAA
1 TAATTTAATTTTATTAA
32402784 TAACTTTAA
1 TAA-TTTAA
32402793 AAAATGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 4 0.18
16 8 0.36
17 9 0.41
18 1 0.05
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (17 bp):
TAATTTAATTTTATTAA
Found at i:32425803 original size:86 final size:85
Alignment explanation
Indices: 32425713--32425964 Score: 249
Period size: 86 Copynumber: 2.9 Consensus size: 85
32425703 AAAGGTCGTG
** *
32425713 ACCTTTAGCGGTGCTTTTCCAGCAAACGCCGCTAAAGAACATGA-CTTTTAGCGACGCTTTCCCC
1 ACCTTTAGCGGCACTTTTCCA-AAAACGCCGCTAAAGAACATGATC-TTTAGCGACGCTTTCCCC
**
32425777 AAAAAATTCGCTAAAGAAC-AT
64 AAAAAAGCCGCTAAAGAACAAT
* * * * * *
32425798 AACCTTTAACGACACTTTTTTCAAAAATGCCGCTAAAGAACATGATCTTTAAC-AGTGCTTTCCC
1 -ACCTTTAGCGGCAC-TTTTCCAAAAACGCCGCTAAAGAACATGATCTTTAGCGA-CGCTTTCCC
**
32425862 CAAAATCGCCGCTAAAGAACAAT
63 CAAAAAAGCCGCTAAAGAACAAT
* * * * * *
32425885 ACCTTTAGCAGCACTTTCCCAAAAAACGCTGCTAAAGAACATGATCTTTAGTGGCGCTTTCTCCA
1 ACCTTTAGCGGCACTTTTCC-AAAAACGCCGCTAAAGAACATGATCTTTAGCGACGCTTTCCCCA
*
32425950 AAAACGCCGCTAAAG
65 AAAAAGCCGCTAAAG
32425965 GTCATGAAAA
Statistics
Matches: 134, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
85 5 0.04
86 120 0.90
87 9 0.07
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.25
Consensus pattern (85 bp):
ACCTTTAGCGGCACTTTTCCAAAAACGCCGCTAAAGAACATGATCTTTAGCGACGCTTTCCCCAA
AAAAGCCGCTAAAGAACAAT
Found at i:32425971 original size:43 final size:43
Alignment explanation
Indices: 32425711--32425964 Score: 226
Period size: 43 Copynumber: 5.9 Consensus size: 43
32425701 CTAAAGGTCG
* *
32425711 TGACCTTTAGCGGTGCTTT-TCCAGCAAACGCCGCTAAAGAACA
1 TGACCTTTAGCGGCGCTTTCTCCA-AAAACGCCGCTAAAGAACA
* * * ***
32425754 TGACTTTTAGCGACGCTTTCCCCAAAAAATTCGCTAAAGAACA
1 TGACCTTTAGCGGCGCTTTCTCCAAAAACGCCGCTAAAGAACA
* * * * * * *
32425797 TAACCTTTAACGACACTTTTTTCAAAAATGCCGCTAAAGAACA
1 TGACCTTTAGCGGCGCTTTCTCCAAAAACGCCGCTAAAGAACA
* * * * * *
32425840 TGATCTTTAACAGTGCTTTCCCCAAAATCGCCGCTAAAGAACAA
1 TGACCTTTAGCGGCGCTTTCTCCAAAAACGCCGCTAAAGAAC-A
* * *
32425884 T-ACCTTTAGCAGCACTTTC-CCAAAAAACGCTGCTAAAGAACA
1 TGACCTTTAGCGGCGCTTTCTCC-AAAAACGCCGCTAAAGAACA
* *
32425926 TGATCTTTAGTGGCGCTTTCTCCAAAAACGCCGCTAAAG
1 TGACCTTTAGCGGCGCTTTCTCCAAAAACGCCGCTAAAG
32425965 GTCATGAAAA
Statistics
Matches: 166, Mismatches: 40, Indels: 10
0.77 0.19 0.05
Matches are distributed among these distances:
42 4 0.02
43 155 0.93
44 7 0.04
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
TGACCTTTAGCGGCGCTTTCTCCAAAAACGCCGCTAAAGAACA
Found at i:32425971 original size:129 final size:128
Alignment explanation
Indices: 32425698--32425971 Score: 286
Period size: 129 Copynumber: 2.1 Consensus size: 128
32425688 AAAATAAGCA
* * * * *
32425698 CCGCTAAAGGTCGTGACCTTTAGCGGTGCTTTTCCAGCAAACGCCGCTAAAGAACATGACTTTTA
1 CCGCTAAAGGTCATGACCTTTAACAGTGCTTTCCCA-CAAACGCCGCTAAAGAACATGACCTTTA
* ** * * *
32425763 GCGACGCTTTCCCCAAAAAATTCGCTAAAGAACATAACCTTTAACGACACTTTTTTCAAAAATG
65 GCGACACTTTCCCCAAAAAACGCGCTAAAGAACATAACCTTTAACGACACTTTCTCCAAAAACG
** *
32425827 CCGCTAAAGAACATGATCTTTAACAGTGCTTTCCC-CAAAATCGCCGCTAAAGAACAAT-ACCTT
1 CCGCTAAAGGTCATGACCTTTAACAGTGCTTTCCCAC-AAA-CGCCGCTAAAGAAC-ATGACCTT
* * ** * *
32425890 TAGC-AGCACTTT-CCCAAAAAACGCTGCTAAAGAACATGATCTTTAGTGGCGCTTTCTCCAAAA
63 TAGCGA-CACTTTCCCCAAAAAACGC-GCTAAAGAACATAACCTTTAACGACACTTTCTCCAAAA
32425953 ACG
126 ACG
32425956 CCGCTAAAGGTCATGA
1 CCGCTAAAGGTCATGA
32425972 AAAATAAAAA
Statistics
Matches: 118, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
127 1 0.01
128 14 0.12
129 101 0.86
130 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (128 bp):
CCGCTAAAGGTCATGACCTTTAACAGTGCTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAG
CGACACTTTCCCCAAAAAACGCGCTAAAGAACATAACCTTTAACGACACTTTCTCCAAAAACG
Done.