Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 104 of 211
Found at i:32426845 original size:23 final size:23
Alignment explanation
Indices: 32426819--32427253 Score: 297
Period size: 23 Copynumber: 19.0 Consensus size: 23
32426809 AATGGAAAGT
*
32426819 AGCACTTTAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* *
32426842 AGCATTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
* *
32426865 AGCACTTTAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * * *
32426888 AACATTTATACACATCAA-TTGC
1 AGCACTTAAACACTTCAATTTAC
* * *
32426910 AGCGA-TAAAATA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
32426933 AGCAAC-TAAACACTTCGATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
32426956 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
32426979 AGCAGTTAAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
* * *
32427002 AGCATTTAAACACTTAAATTTGC
1 AGCACTTAAACACTTCAATTTAC
*
32427025 AGCACTTAAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
32427048 AACATTTATACACATCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
32427070 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
*
32427093 AGCAAC-TAAACACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
32427116 AGCACTTAAACACTTCAATTTGC
1 AGCACTTAAACACTTCAATTTAC
* *
32427139 AGCACTTTAACA-TATCAATTAAC
1 AGCACTTAAACACT-TCAATTTAC
* * * *
32427162 AACATTTATACACCTCAA-TTAC
1 AGCACTTAAACACTTCAATTTAC
* *
32427184 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ACTTAAACACT-TCAATTTAC
* *
32427207 AGCAAC-TAAATACTTCAATTTGC
1 AGC-ACTTAAACACTTCAATTTAC
*
32427230 AGTACTTAAACACTTCAATTTAC
1 AGCACTTAAACACTTCAATTTAC
32427253 A
1 A
32427254 AATCCACCAT
Statistics
Matches: 319, Mismatches: 69, Indels: 48
0.73 0.16 0.11
Matches are distributed among these distances:
22 49 0.15
23 267 0.84
24 3 0.01
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (23 bp):
AGCACTTAAACACTTCAATTTAC
Found at i:32427081 original size:114 final size:114
Alignment explanation
Indices: 32426970--32427250 Score: 472
Period size: 114 Copynumber: 2.5 Consensus size: 114
32426960 CTTAAACACT
* ** * * *
32426970 TCAATTTGCAGCAGTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
32427035 CATATCAATTAACAACATTTATACACATCAATTACAGCGATAAAACATC
66 CATATCAATTAACAACATTTATACACATCAATTACAGCGATAAAACATC
*
32427084 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTTAA
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
*
32427149 CATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATC
66 CATATCAATTAACAACATTTATACACATCAATTACAGCGATAAAACATC
* *
32427198 TCAATTTCCAGCAACTAAATACTTCAATTTGCAGTACTTAAACACTTCAATTT
1 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTT
32427251 ACAAATCCAC
Statistics
Matches: 157, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 157 1.00
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (114 bp):
TCAATTTCCAGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTGCAGCACTTAAA
CATATCAATTAACAACATTTATACACATCAATTACAGCGATAAAACATC
Found at i:32427091 original size:160 final size:160
Alignment explanation
Indices: 32426819--32427174 Score: 597
Period size: 160 Copynumber: 2.2 Consensus size: 160
32426809 AATGGAAAGT
* * *
32426819 AGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATATCAAT
1 AGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAAT
* *
32426884 TAACAACATTTATACACATCAATTGCAGCGATAAAATATCTCAATTTCCAGCAACTAAACACTTC
66 TAACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTC
*
32426949 GATTTGCAGCACTTAAACACTTCAATTTGC
131 AATTTGCAGCACTTAAACACTTCAATTTGC
*
32426979 AGCAGTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAAT
1 AGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAAT
32427044 TAACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTC
66 TAACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTC
32427109 AATTTGCAGCACTTAAACACTTCAATTTGC
131 AATTTGCAGCACTTAAACACTTCAATTTGC
* * * *
32427139 AGCACTTTAACA-TATCAATTAACAACATTTATACAC
1 AGCACTTAAACACT-TCAATTTACAGCATTTAAACAC
32427175 CTCAATTACA
Statistics
Matches: 183, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
159 1 0.01
160 182 0.99
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (160 bp):
AGCACTTAAACACTTCAATTTACAGCATTTAAACACTTAAATTTGCAGCACTTAAACATATCAAT
TAACAACATTTATACACATCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTC
AATTTGCAGCACTTAAACACTTCAATTTGC
Found at i:32430633 original size:41 final size:41
Alignment explanation
Indices: 32430588--32430815 Score: 185
Period size: 41 Copynumber: 5.6 Consensus size: 41
32430578 TTCAAAAATA
* * * *
32430588 GAGCATTAGCGGCGCTTCTTCAAAAGTGTCGCTAAATCCTC
1 GAGCATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGCCCC
*** * ***
32430629 GAGCATTAATAGTG-TT-TTTTTAAATGCCGCTAAAGCCCC
1 GAGCATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGCCCC
* * *
32430668 GAGCACTAGCGACGCTTCTTCAAAAATGCCGCTAAAGCCTC
1 GAGCATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGCCCC
* * * *
32430709 AAGCATTAGCAGCGCTTCTT-AAAATTACCGCTAAAGCCCC
1 GAGCATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGCCCC
* * * * * * *
32430749 TAACATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAACCCT
1 GAGCATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGCCCC
*
32430790 AAGCATTAGCGGCGCTT-TTCCAAAAA
1 GAGCATTAGCGGCGCTTCTT-CAAAAA
32430816 CGTCGTTAAT
Statistics
Matches: 143, Mismatches: 40, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
39 24 0.17
40 39 0.27
41 80 0.56
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (41 bp):
GAGCATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAGCCCC
Found at i:32430774 original size:81 final size:80
Alignment explanation
Indices: 32430591--32430806 Score: 227
Period size: 81 Copynumber: 2.7 Consensus size: 80
32430581 AAAAATAGAG
* * * * ** * * * * *
32430591 CATTAGCGGCGCTTCTTCAAAAGTGTCGCTAAATCCTCGAGCATTAATAGTGTTTTTTTAAATGC
1 CATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAACCTCAAGCATTAGCAGCGCTTCTTAAAATAC
*
32430656 CGCTAAAGCCCCGAG
66 CGCTAAAGCCCCGAA
* * *
32430671 CACTAGCGACGCTTCTTCAAAAATGCCGCTAAAGCCTCAAGCATTAGCAGCGCTTCTTAAAATTA
1 CATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAACCTCAAGCATTAGCAGCGCTTCTTAAAA-TA
*
32430736 CCGCTAAAGCCCCTAA
65 CCGCTAAAGCCCCGAA
* * * *
32430752 CATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAACC-CTAAGCATTAGCGGCGCTT
1 CATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAACCTC-AAGCATTAGCAGCGCTT
32430807 TTCCAAAAAC
Statistics
Matches: 112, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 51 0.46
81 61 0.54
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (80 bp):
CATTAGCGGCGCTTCTTCAAAAATGCCGCTAAAACCTCAAGCATTAGCAGCGCTTCTTAAAATAC
CGCTAAAGCCCCGAA
Found at i:32430937 original size:39 final size:40
Alignment explanation
Indices: 32430885--32430977 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
32430875 GCATTTTTGG
*
32430885 AAAA-CGCCGCTAATGCTC-AT-TTTCAGTGGCGTTTTTTA
1 AAAAGCGCCGCTAATACTCGATCTTT-AGTGGCGTTTTTTA
* * *
32430923 AAAAGCGCCACTAATACTCGATCTTTAGTGGCTTTTTTTT
1 AAAAGCGCCGCTAATACTCGATCTTTAGTGGCGTTTTTTA
32430963 AAAAGCGCCGCTAAT
1 AAAAGCGCCGCTAAT
32430978 TCTTGATTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 4 0.09
39 12 0.26
40 28 0.60
41 3 0.06
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (40 bp):
AAAAGCGCCGCTAATACTCGATCTTTAGTGGCGTTTTTTA
Found at i:32431000 original size:40 final size:41
Alignment explanation
Indices: 32430915--32431017 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 41
32430905 TTTCAGTGGC
*
32430915 GTTTTTTAAAAAGCGCCACTAATACTCGATCTTTAGTGGCT
1 GTTTTTTAAAAAGCGCCACTAATACTCGATCTTTAGCGGCT
* * * *
32430956 -TTTTTTTAAAAGCGCCGCTAATTCTTGAT-TGTTAGCGG-T
1 GTTTTTTAAAAAGCGCCACTAATACTCGATCT-TTAGCGGCT
**
32430995 GTTTTTTATCCAAGCGCCACTAA
1 GTTTTTTA-AAAAGCGCCACTAA
32431018 AAACGCCGCT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
39 2 0.04
40 37 0.74
41 11 0.22
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.39
Consensus pattern (41 bp):
GTTTTTTAAAAAGCGCCACTAATACTCGATCTTTAGCGGCT
Found at i:32441905 original size:41 final size:41
Alignment explanation
Indices: 32441853--32442078 Score: 317
Period size: 41 Copynumber: 5.5 Consensus size: 41
32441843 ACCAGCACTT
* * * * *
32441853 AGCCTGTTAGACATAAAGTCTGATATGTTTCACTGGCATCA
1 AGCCTGCTAGACGTAATGTCTGGTATGTTTCACCGGCATCA
* * * *
32441894 AGTCTGCTAGACATAATGTTTGGTATGTTTCACCGGTATCA
1 AGCCTGCTAGACGTAATGTCTGGTATGTTTCACCGGCATCA
* *
32441935 AGCCTGCTAGACGTAATGTCAGGTATGTTTCGCCGGCATCA
1 AGCCTGCTAGACGTAATGTCTGGTATGTTTCACCGGCATCA
* *
32441976 AGCTTGCTAGACGTAATGTCTGGTATGTTTCACCGGTATCA
1 AGCCTGCTAGACGTAATGTCTGGTATGTTTCACCGGCATCA
32442017 AGCCTGCTAGACGTAATGTCTGGTATGTTTCACCGGCATCA
1 AGCCTGCTAGACGTAATGTCTGGTATGTTTCACCGGCATCA
* *
32442058 AGCTTTCTAGACGTAATGTCT
1 AGCCTGCTAGACGTAATGTCT
32442079 CGATTACTTC
Statistics
Matches: 164, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 164 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (41 bp):
AGCCTGCTAGACGTAATGTCTGGTATGTTTCACCGGCATCA
Found at i:32442278 original size:12 final size:12
Alignment explanation
Indices: 32442261--32442285 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32442251 AAATTCATAA
32442261 ACATATATATAT
1 ACATATATATAT
32442273 ACATATATATAT
1 ACATATATATAT
32442285 A
1 A
32442286 AAGTCGAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ACATATATATAT
Found at i:32453584 original size:33 final size:33
Alignment explanation
Indices: 32453547--32453611 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
32453537 TTCTTTATTG
* *
32453547 CTTTACCAATGGTGGACGGAAAGGAACAAGATT
1 CTTTACCAATGGTGGACAGAAAGGAAAAAGATT
*
32453580 CTTTACCAATGGTGGATAGAAAGGAAAAAGAT
1 CTTTACCAATGGTGGACAGAAAGGAAAAAGAT
32453612 GAAGTGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (33 bp):
CTTTACCAATGGTGGACAGAAAGGAAAAAGATT
Found at i:32454081 original size:39 final size:39
Alignment explanation
Indices: 32454016--32454166 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 39
32454006 TGTTTGGACA
* * *
32454016 AAAAACGCCGCTAAAAATTGAGCATTAGCGGCGCTTTTAG
1 AAAAACACAGCTAAAAATAGAGCATTAGCGGCGCTTTT-G
*
32454056 AAAAACATAGCT-AAAATAGAGCATTAGCGGCGCCTTTTG
1 AAAAACACAGCTAAAAATAGAGCATTAGCGGCG-CTTTTG
* * * *
32454095 AAAAATACCA-CTAAAAATAGAACATTAGCAGTGCTTTTTG
1 AAAAACA-CAGCTAAAAATAGAGCATTAGCGGCGC-TTTTG
*
32454135 AAAAACACCGCTAAAAATAGAGCATTAGCGGC
1 AAAAACACAGCTAAAAATAGAGCATTAGCGGC
32454167 ATTTTCCAGG
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 30 0.33
40 62 0.67
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (39 bp):
AAAAACACAGCTAAAAATAGAGCATTAGCGGCGCTTTTG
Found at i:32454292 original size:42 final size:41
Alignment explanation
Indices: 32454226--32454317 Score: 107
Period size: 41 Copynumber: 2.2 Consensus size: 41
32454216 TGAGCTTTCG
*
32454226 GGGCTTTAGCGGAGTTTTTTAAAAAAGCACCGCTAATACTC-
1 GGGCTTTAGCGGAG-ATTTTAAAAAAGCACCGCTAATACTCT
** *
32454267 GAGGCTTTAGC-GACGATTTTAAAAAAGTGCCGCTAATGCTCT
1 G-GGCTTTAGCGGA-GATTTTAAAAAAGCACCGCTAATACTCT
32454309 GGGCTTTAG
1 GGGCTTTAG
32454318 TGGCTTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
41 33 0.75
42 11 0.25
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (41 bp):
GGGCTTTAGCGGAGATTTTAAAAAAGCACCGCTAATACTCT
Found at i:32454760 original size:7 final size:7
Alignment explanation
Indices: 32454745--32454793 Score: 71
Period size: 7 Copynumber: 6.9 Consensus size: 7
32454735 ACCATTTGAA
32454745 GGTTTAT
1 GGTTTAT
*
32454752 GGATTAT
1 GGTTTAT
32454759 GGGTTTAT
1 -GGTTTAT
*
32454767 GGGTTAT
1 GGTTTAT
32454774 GGTTTAT
1 GGTTTAT
32454781 GGTTTAT
1 GGTTTAT
32454788 GGTTTA
1 GGTTTA
32454794 AAGGTTGGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
7 31 0.84
8 6 0.16
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (7 bp):
GGTTTAT
Found at i:32454774 original size:22 final size:21
Alignment explanation
Indices: 32454748--32454789 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
32454738 ATTTGAAGGT
32454748 TTATGGATTATGGGTTTATGGG
1 TTATGGATTAT-GGTTTATGGG
*
32454770 TTATGGTTTATGGTTTATGG
1 TTATGGATTATGGTTTATGG
32454790 TTTAAAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (21 bp):
TTATGGATTATGGTTTATGGG
Found at i:32454860 original size:7 final size:7
Alignment explanation
Indices: 32454830--32454881 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
32454820 TTATCTATTA
32454830 AGGGTTT
1 AGGGTTT
*
32454837 ATGGTTTT
1 A-GGGTTT
32454845 AGGGTTTT
1 AGGG-TTT
32454853 AGGGTTT
1 AGGGTTT
32454860 A-GGTTT
1 AGGGTTT
*
32454866 ATGGTTT
1 AGGGTTT
32454873 AGGGTTT
1 AGGGTTT
32454880 AG
1 AG
32454882 ATTAACTAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
6 6 0.15
7 20 0.51
8 13 0.33
ACGTcount: A:0.15, C:0.00, G:0.37, T:0.48
Consensus pattern (7 bp):
AGGGTTT
Found at i:32454878 original size:14 final size:14
Alignment explanation
Indices: 32454745--32454880 Score: 91
Period size: 14 Copynumber: 9.4 Consensus size: 14
32454735 ACCATTTGAA
*
32454745 GGTTTATGGATTATG
1 GGTTTATGGTTTA-G
* *
32454760 GGTTTATGGGTTAT
1 GGTTTATGGTTTAG
*
32454774 GGTTTATGGTTTAT
1 GGTTTATGGTTTAG
* *
32454788 GGTTTAAAGG-TTGG
1 GGTTT-ATGGTTTAG
*
32454802 GGTTTAGAGGTTTAG
1 GGTTTA-TGGTTTAG
*
32454817 AGG-TTAT-CTATTAAG
1 -GGTTTATGGT-TT-AG
32454832 GGTTTATGGTTTTAG
1 GGTTTATGG-TTTAG
*
32454847 GGTTTTAGGGTTTA-
1 GG-TTTATGGTTTAG
32454861 GGTTTATGGTTTAG
1 GGTTTATGGTTTAG
32454875 GGTTTA
1 GGTTTA
32454881 GATTAACTAG
Statistics
Matches: 98, Mismatches: 12, Indels: 23
0.74 0.09 0.17
Matches are distributed among these distances:
13 12 0.12
14 40 0.41
15 35 0.36
16 10 0.10
17 1 0.01
ACGTcount: A:0.18, C:0.01, G:0.34, T:0.47
Consensus pattern (14 bp):
GGTTTATGGTTTAG
Found at i:32454948 original size:14 final size:14
Alignment explanation
Indices: 32454926--32455099 Score: 73
Period size: 14 Copynumber: 12.2 Consensus size: 14
32454916 TTAATTATCA
*
32454926 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
32454940 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
*
32454954 TTAAGGTTTAGGAGT
1 TTATGGTTTAGG-GT
* *
32454969 TACTAT--CTTAAGGT
1 T--TATGGTTTAGGGT
* * **
32454983 TTATGGGTTATGAA
1 TTATGGTTTAGGGT
* *
32454997 TTATGGATTTAGAGA
1 TTATGG-TTTAGGGT
*
32455012 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
* * *
32455026 TTAAGGGTTGGGGT
1 TTATGGTTTAGGGT
* *
32455040 TTAAGGTTTAGGGG
1 TTATGGTTTAGGGT
* * * *
32455054 TTAGGGGCTAAGTGT
1 TTA-TGGTTTAGGGT
* * *
32455069 TTAGGGTTTATGTT
1 TTATGGTTTAGGGT
*
32455083 TTATGGTTTAAGGT
1 TTATGGTTTAGGGT
32455097 TTA
1 TTA
32455100 GAAGATAGGG
Statistics
Matches: 117, Mismatches: 36, Indels: 14
0.70 0.22 0.08
Matches are distributed among these distances:
12 3 0.03
14 86 0.74
15 26 0.22
17 2 0.02
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:32455040 original size:21 final size:22
Alignment explanation
Indices: 32455016--32455076 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
32455006 TAGAGATTAT
*
32455016 GGTTTATGGTTTAAGGGTT-GG
1 GGTTTAAGGTTTAAGGGTTAGG
*
32455037 GGTTTAAGGTTTAGGGGTTAGG
1 GGTTTAAGGTTTAAGGGTTAGG
*
32455059 GG-CTAAGTGTTT-AGGGTT
1 GGTTTAAG-GTTTAAGGGTT
32455077 TATGTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
21 26 0.76
22 8 0.24
ACGTcount: A:0.16, C:0.02, G:0.43, T:0.39
Consensus pattern (22 bp):
GGTTTAAGGTTTAAGGGTTAGG
Found at i:32455087 original size:86 final size:85
Alignment explanation
Indices: 32454925--32455092 Score: 187
Period size: 86 Copynumber: 2.0 Consensus size: 85
32454915 ATTAATTATC
* * * *
32454925 ATTATAGTTTAGGGTTTATGGTTTAGGGTTTAAGGTTTAGGAGTTACTATCTTAAGGTTTATGGG
1 ATTATAGTTTAGGGTTTAAGGGTTAGGGTTTAAGGTTTAGGAGTTACGAGCTTAAGGTTTATGGG
32454990 TTATGAATTATGGATTTAGAG
66 TTATGAATTATGG-TTTAGAG
* * * * * *
32455011 ATTATGGTTTATGGTTTAAGGGTTGGGGTTTAAGGTTTAGGGGTTAGGGGC-TAAGTGTTTA-GG
1 ATTATAGTTTAGGGTTTAAGGGTTAGGGTTTAAGGTTTAGGAGTTACGAGCTTAAG-GTTTATGG
**
32455074 GTTTATGTTTTATGGTTTA
65 G-TTATGAATTATGGTTTA
32455093 AGGTTTAGAA
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
85 11 0.16
86 57 0.84
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.45
Consensus pattern (85 bp):
ATTATAGTTTAGGGTTTAAGGGTTAGGGTTTAAGGTTTAGGAGTTACGAGCTTAAGGTTTATGGG
TTATGAATTATGGTTTAGAG
Found at i:32458109 original size:40 final size:40
Alignment explanation
Indices: 32458025--32458208 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
32458015 TTGAATGCTG
* * * *
32458025 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
32458064 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
32458105 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
32458145 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
32458185 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32458209 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:32458162 original size:80 final size:81
Alignment explanation
Indices: 32458025--32458205 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
32458015 TTGAATGCTG
* * *
32458025 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
32458089 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
32458105 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
32458166 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
32458185 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
32458206 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:32458229 original size:39 final size:38
Alignment explanation
Indices: 32458106--32458255 Score: 122
Period size: 40 Copynumber: 3.8 Consensus size: 38
32458096 GTTATTAATT
* ** * *
32458106 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACT-ATA
** * *
32458146 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-ATA
*
32458185 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAT-A
* *
32458225 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
32458256 GAGCTATATC
Statistics
Matches: 92, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.35
40 60 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTATA
Found at i:32466010 original size:40 final size:40
Alignment explanation
Indices: 32465926--32466110 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
32465916 TTGAATGCTG
* * * *
32465926 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
32465965 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
32466006 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
32466046 TCCGGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCC-GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
32466087 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32466111 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 79 0.64
41 43 0.35
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:32466164 original size:39 final size:39
Alignment explanation
Indices: 32465926--32466169 Score: 115
Period size: 40 Copynumber: 6.1 Consensus size: 39
32465916 TTGAATGCTG
* ** *
32465926 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTGAAC-GAGTGACTATA
* * ** * *
32465966 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTA-A
1 TCCGGGCTAAG-TCCCGAAGGCA-TTGAACGAGTGACTATA
* * **
32466005 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGAT-ACTA-A
1 -TCCGGGCTAAGTCCCGAAGG-CATTGAACGAG-TGACTATA
* ** ** *
32466045 TTCCGGGGTTAAGTCCCGAAGGCATTCGTGCGAGT-TTTAAAA
1 -TCC-GGGCTAAGTCCCGAAGGCATT-GAACGAGTGACT-ATA
* * *
32466087 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATA
*
32466126 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG-GAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGA-CTATA
32466165 TCCGG
1 TCCGG
32466170 TTAAATTCCG
Statistics
Matches: 166, Mismatches: 24, Indels: 28
0.76 0.11 0.13
Matches are distributed among these distances:
38 20 0.12
39 22 0.13
40 87 0.52
41 36 0.22
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATA
Found at i:32472375 original size:33 final size:33
Alignment explanation
Indices: 32472338--32472402 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
32472328 TTCTTTATTG
* *
32472338 CTTTACCAATGGTGGACGGAAAGGAACAAGATT
1 CTTTACCAATGGTGGACAGAAAGGAAAAAGATT
*
32472371 CTTTACCAATGGTGGATAGAAAGGAAAAAGAT
1 CTTTACCAATGGTGGACAGAAAGGAAAAAGAT
32472403 GAAGTGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (33 bp):
CTTTACCAATGGTGGACAGAAAGGAAAAAGATT
Found at i:32472873 original size:39 final size:39
Alignment explanation
Indices: 32472807--32472957 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 39
32472797 CGTTTGGACA
* * *
32472807 AAAAACGCCGCTAAAAATTGAGCATTAGCGGCGCTTTTAG
1 AAAAACACAGCTAAAAATAGAGCATTAGCGGCGCTTTT-G
*
32472847 AAAAACATAGCT-AAAATAGAGCATTAGCGGCGCCTTTTG
1 AAAAACACAGCTAAAAATAGAGCATTAGCGGCG-CTTTTG
* * * *
32472886 AAAAATACCA-CTAAAAATAGAACATTAGCAGTGCTTTTTG
1 AAAAACA-CAGCTAAAAATAGAGCATTAGCGGCGC-TTTTG
*
32472926 AAAAACACCGCTAAAAATAGAGCATTAGCGGC
1 AAAAACACAGCTAAAAATAGAGCATTAGCGGC
32472958 ATTTTCCAGG
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 30 0.33
40 62 0.67
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (39 bp):
AAAAACACAGCTAAAAATAGAGCATTAGCGGCGCTTTTG
Found at i:32473559 original size:8 final size:7
Alignment explanation
Indices: 32473536--32473592 Score: 78
Period size: 7 Copynumber: 7.9 Consensus size: 7
32473526 ACCATTTGAA
32473536 GGTTTAT
1 GGTTTAT
*
32473543 GGATTAT
1 GGTTTAT
32473550 GGGTTTAT
1 -GGTTTAT
32473558 GGGTTTAT
1 -GGTTTAT
*
32473566 GGGTTAT
1 GGTTTAT
32473573 GGTTTAT
1 GGTTTAT
32473580 GGTTTAT
1 GGTTTAT
32473587 GGTTTA
1 GGTTTA
32473593 AAGGTTGGGG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
7 31 0.69
8 14 0.31
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (7 bp):
GGTTTAT
Found at i:32473665 original size:6 final size:7
Alignment explanation
Indices: 32473536--32473673 Score: 52
Period size: 7 Copynumber: 19.0 Consensus size: 7
32473526 ACCATTTGAA
*
32473536 GGTTTAT
1 GGTTTAG
*
32473543 GGATTATG
1 GGTTTA-G
32473551 GGTTTATG
1 GGTTTA-G
32473559 GGTTTATG
1 GGTTTA-G
*
32473567 GG-TTAT
1 GGTTTAG
*
32473573 GGTTTAT
1 GGTTTAG
*
32473580 GGTTTAT
1 GGTTTAG
*
32473587 GGTTTAAA
1 GGTTT-AG
*
32473595 GG-TTGG
1 GGTTTAG
32473601 GGTTTAG
1 GGTTTAG
32473608 AGGTTTAG
1 -GGTTTAG
32473616 AGG-TTA-
1 -GGTTTAG
**
32473622 TCTATTAAG
1 GGT-TT-AG
32473631 GGTTTATG
1 GGTTTA-G
*
32473639 GTTTTAG
1 GGTTTAG
32473646 GGTTTTAG
1 GG-TTTAG
32473654 GGTTTA-
1 GGTTTAG
*
32473660 GGTTTAT
1 GGTTTAG
32473667 GGTTTAG
1 GGTTTAG
32473674 ATTAACTAGT
Statistics
Matches: 104, Mismatches: 15, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
6 10 0.10
7 47 0.45
8 46 0.44
9 1 0.01
ACGTcount: A:0.18, C:0.01, G:0.34, T:0.47
Consensus pattern (7 bp):
GGTTTAG
Found at i:32473740 original size:14 final size:14
Alignment explanation
Indices: 32473718--32473891 Score: 82
Period size: 14 Copynumber: 12.2 Consensus size: 14
32473708 TTAATTATCA
*
32473718 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
32473732 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
*
32473746 TTAAGGTTTAGGAGT
1 TTATGGTTTAGG-GT
* *
32473761 TACTAT--CTTAAGGT
1 T--TATGGTTTAGGGT
* * **
32473775 TTATGGGTTATGAA
1 TTATGGTTTAGGGT
* *
32473789 TTATGGATTTAGAGA
1 TTATGG-TTTAGGGT
*
32473804 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
* * *
32473818 TTAAGGGTTGGGGT
1 TTATGGTTTAGGGT
* *
32473832 TTAAGGTTTAGGGG
1 TTATGGTTTAGGGT
* * * *
32473846 TTAGGGGCTAAGTGT
1 TTA-TGGTTTAGGGT
* * *
32473861 TTAGGGTTTATGTT
1 TTATGGTTTAGGGT
32473875 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
32473889 TTA
1 TTA
32473892 GAAGATAGGG
Statistics
Matches: 117, Mismatches: 36, Indels: 14
0.70 0.22 0.08
Matches are distributed among these distances:
12 3 0.03
14 86 0.74
15 26 0.22
17 2 0.02
ACGTcount: A:0.21, C:0.02, G:0.32, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:32473832 original size:21 final size:22
Alignment explanation
Indices: 32473808--32473868 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
32473798 TAGAGATTAT
*
32473808 GGTTTATGGTTTAAGGGTT-GG
1 GGTTTAAGGTTTAAGGGTTAGG
*
32473829 GGTTTAAGGTTTAGGGGTTAGG
1 GGTTTAAGGTTTAAGGGTTAGG
*
32473851 GG-CTAAGTGTTT-AGGGTT
1 GGTTTAAG-GTTTAAGGGTT
32473869 TATGTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
21 26 0.76
22 8 0.24
ACGTcount: A:0.16, C:0.02, G:0.43, T:0.39
Consensus pattern (22 bp):
GGTTTAAGGTTTAAGGGTTAGG
Found at i:32473863 original size:86 final size:85
Alignment explanation
Indices: 32473717--32473885 Score: 189
Period size: 86 Copynumber: 2.0 Consensus size: 85
32473707 ATTAATTATC
* * * *
32473717 ATTATAGTTTAGGGTTTATGGTTTAGGGTTTAAGGTTTAGGAGTTACTATCTTAAGGTTTATGGG
1 ATTATAGTTTAGGGTTTAAGGGTTAGGGTTTAAGGTTTAGGAGTTACGAGCTTAAGGTTTA-GGG
32473782 -TTATGAATTATGGATTTAGAG
65 TTTATGAATTATGG-TTTAGAG
* * * * * *
32473803 ATTATGGTTTATGGTTTAAGGGTTGGGGTTTAAGGTTTAGGGGTTAGGGGC-TAAGTGTTTAGGG
1 ATTATAGTTTAGGGTTTAAGGGTTAGGGTTTAAGGTTTAGGAGTTACGAGCTTAAG-GTTTAGGG
**
32473867 TTTATGTTTTATGGTTTAG
65 TTTATGAATTATGGTTTAG
32473886 GGTTTAGAAG
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
85 12 0.17
86 57 0.83
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.44
Consensus pattern (85 bp):
ATTATAGTTTAGGGTTTAAGGGTTAGGGTTTAAGGTTTAGGAGTTACGAGCTTAAGGTTTAGGGT
TTATGAATTATGGTTTAGAG
Found at i:32473892 original size:7 final size:7
Alignment explanation
Indices: 32473723--32473892 Score: 58
Period size: 7 Copynumber: 23.9 Consensus size: 7
32473713 TATCATTATA
32473723 GTTTAGG
1 GTTTAGG
*
32473730 GTTTATG
1 GTTTAGG
32473737 GTTTAGG
1 GTTTAGG
*
32473744 GTTTAAG
1 GTTTAGG
32473751 GTTTAGG
1 GTTTAGG
**
32473758 AG-TTACT
1 -GTTTAGG
* *
32473765 ATCTTAAG
1 GT-TTAGG
32473773 GTTTATGG
1 GTTTA-GG
*
32473781 G-TTATG
1 GTTTAGG
**
32473787 AATTATGG
1 GTTTA-GG
* *
32473795 ATTTAGA
1 GTTTAGG
* *
32473802 GATTATG
1 GTTTAGG
*
32473809 GTTTATG
1 GTTTAGG
32473816 GTTTAAGG
1 GTTT-AGG
*
32473824 G-TTGGG
1 GTTTAGG
*
32473830 GTTTAAG
1 GTTTAGG
32473837 GTTTAGG
1 GTTTAGG
*
32473844 GGTTAGGG
1 GTTTA-GG
* * *
32473852 GCTAAGT
1 GTTTAGG
32473859 GTTTAGG
1 GTTTAGG
*
32473866 GTTTATG
1 GTTTAGG
* *
32473873 TTTTATG
1 GTTTAGG
32473880 GTTTAGG
1 GTTTAGG
32473887 GTTTAG
1 GTTTAG
32473893 AAGATAGGGG
Statistics
Matches: 117, Mismatches: 37, Indels: 18
0.68 0.22 0.10
Matches are distributed among these distances:
6 4 0.03
7 93 0.79
8 20 0.17
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.44
Consensus pattern (7 bp):
GTTTAGG
Found at i:32475357 original size:10 final size:10
Alignment explanation
Indices: 32475328--32475360 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
32475318 CTGTTTTTTA
32475328 ATTTCTCTTT
1 ATTTCTCTTT
*
32475338 ATTT-TGTTT
1 ATTTCTCTTT
32475347 ATTTCTCTTT
1 ATTTCTCTTT
32475357 ATTT
1 ATTT
32475361 TGGTATTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.73
Consensus pattern (10 bp):
ATTTCTCTTT
Found at i:32478834 original size:43 final size:43
Alignment explanation
Indices: 32478786--32478959 Score: 127
Period size: 43 Copynumber: 4.1 Consensus size: 43
32478776 TTCTTTGGCG
* **
32478786 ATGTTCTTTAGCGGCATTTGTTGGTAAAGCGTCGCTAAAGGTC
1 ATGTTCTTTAGCGGCATTTGTGGGTAAAGCACCGCTAAAGGTC
* ** ** *
32478829 ATGTTCTTTAGTGGTGTTTGTGGGTAAAGCACCGCTAAAACTT
1 ATGTTCTTTAGCGGCATTTGTGGGTAAAGCACCGCTAAAGGTC
* * * * * * *
32478872 ATGTTCTATAGTGACGTTTGTGGGAAAAGCACCACTAAAAGTC
1 ATGTTCTTTAGCGGCATTTGTGGGTAAAGCACCGCTAAAGGTC
* * * * **
32478915 ACGATC-ATAGCGGCGTTTGTGGG-AGAAGTGCCGCTAAAGGTC
1 ATGTTCTTTAGCGGCATTTGTGGGTA-AAGCACCGCTAAAGGTC
32478957 ATG
1 ATG
32478960 GCTTAAAAAT
Statistics
Matches: 105, Mismatches: 25, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
41 1 0.01
42 30 0.29
43 74 0.70
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
ATGTTCTTTAGCGGCATTTGTGGGTAAAGCACCGCTAAAGGTC
Found at i:32481896 original size:30 final size:30
Alignment explanation
Indices: 32481860--32481929 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
32481850 CACCACTAAT
* *
32481860 CATTTTCCTTTACAGACGTAATGAAGCTGC
1 CATTTTCCATTACAGACATAATGAAGCTGC
* *
32481890 CATTTTCCATTAGAGACATAATGAAGCTGT
1 CATTTTCCATTACAGACATAATGAAGCTGC
32481920 CATTTTCCAT
1 CATTTTCCAT
32481930 CATTCTCTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (30 bp):
CATTTTCCATTACAGACATAATGAAGCTGC
Found at i:32483058 original size:151 final size:148
Alignment explanation
Indices: 32482712--32483069 Score: 585
Period size: 149 Copynumber: 2.4 Consensus size: 148
32482702 TTTATCCATT
*
32482712 TGTTCGTATTTTTTCCTCGGATTTTATTACTTTTAAAAAATATACTA-TTTTTAATTTTTTTATT
1 TGTTCGTATTTTTTCC-CGGATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTTAATT
32482776 TTACATTATTTTAGTACATTATTTGAAATGTATTAATTTAGTGTCTTTTTTAAATAAATTAAAAA
65 TTACATTATTTTAGTACATTATTTGAAATGTATTAATTTAGTG-CTTTTTTAAATAAATTAAAAA
*
32482841 AAACCCTTATTTCGGCCCTA
129 AAACCCTTATTCCGGCCCTA
* *
32482861 TGTTCGTATTTTTTCCCGAATTTTATTACTTTTAAAAAATACACTATTTTTTAATTTTTTAATTT
1 TGTTCGTATTTTTTCCCGGATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTTAATTT
* *
32482926 TACATTATTTTAGTATATTATATTTGAACTGTATTAATTTAGTG-TTTTTTAAATAAATTTAAAA
66 TACATTATTTTAGTACA-T-TATTTGAAATGTATTAATTTAGTGCTTTTTTAAATAAA-TTAAAA
32482990 AAAACCCTTATTCCGGCCCTA
128 AAAACCCTTATTCCGGCCCTA
32483011 TGTTCGTATTTTTTTCCCGGATTTTATTACTTTTAAAAAATATACTATTTTTTTAATTT
1 TGTTCGTA-TTTTTTCCCGGATTTTATTACTTTTAAAAAATATACTA-TTTTTTAATTT
32483070 AGAGTTCTAC
Statistics
Matches: 195, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
148 28 0.14
149 62 0.32
150 35 0.18
151 59 0.30
152 11 0.06
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (148 bp):
TGTTCGTATTTTTTCCCGGATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTTAATTT
TACATTATTTTAGTACATTATTTGAAATGTATTAATTTAGTGCTTTTTTAAATAAATTAAAAAAA
ACCCTTATTCCGGCCCTA
Found at i:32483848 original size:21 final size:21
Alignment explanation
Indices: 32483822--32483863 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
32483812 CGTCTTTGTT
**
32483822 TTTTTTTGTATTATTTTGGTA
1 TTTTTTTAAATTATTTTGGTA
*
32483843 TTTTTTTAAATTTTTTTGGTA
1 TTTTTTTAAATTATTTTGGTA
32483864 ATATAATGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.12, T:0.71
Consensus pattern (21 bp):
TTTTTTTAAATTATTTTGGTA
Found at i:32489092 original size:20 final size:20
Alignment explanation
Indices: 32489051--32489097 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
32489041 TAAGGTATCA
* *
32489051 ATACTTTGTGAAAGTTATTG
1 ATACTTTGTGAAAGATAATG
*
32489071 ATACTTTGTTAAAGATAATG
1 ATACTTTGTGAAAGATAATG
*
32489091 ATGCTTT
1 ATACTTT
32489098 TGATTTTTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.45
Consensus pattern (20 bp):
ATACTTTGTGAAAGATAATG
Found at i:32489163 original size:20 final size:20
Alignment explanation
Indices: 32489138--32489190 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
32489128 AACTTAAATT
32489138 GGTATCGATACTTAGGCCCA
1 GGTATCGATACTTAGGCCCA
32489158 GGTATCGATACTTAGGCCCA
1 GGTATCGATACTTAGGCCCA
32489178 GGTATCGATACTT
1 GGTATCGATACTT
32489191 TGATCCCTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (20 bp):
GGTATCGATACTTAGGCCCA
Found at i:32491070 original size:21 final size:21
Alignment explanation
Indices: 32491045--32491086 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
32491035 ATTAAAACAA
32491045 TTTAATTGTATTTTCAAAATT
1 TTTAATTGTATTTTCAAAATT
32491066 TTTAATTGTATTTTCAAAATT
1 TTTAATTGTATTTTCAAAATT
32491087 AAGGAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (21 bp):
TTTAATTGTATTTTCAAAATT
Found at i:32496473 original size:3 final size:3
Alignment explanation
Indices: 32496467--32496543 Score: 73
Period size: 3 Copynumber: 25.0 Consensus size: 3
32496457 TTTTTTTTAA
** * * *
32496467 TAT TAT TAT TAT TAT TAT TGC TAT TAT TAT TTT TAT CAC TATT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* *
32496513 TAT TGT TAT TAT TAT TAT TAT AAT TGAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
32496544 AAGTCTATTC
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
3 53 0.91
4 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:32501664 original size:26 final size:27
Alignment explanation
Indices: 32501628--32501678 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
32501618 AAATTCCAAA
32501628 AAAAAAACAAAAACAAAA-AAAAAAGG
1 AAAAAAACAAAAACAAAATAAAAAAGG
* **
32501654 AAAAAATCAAAGTCAAAATAAAAAA
1 AAAAAAACAAAAACAAAATAAAAAA
32501679 TATGAAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.80, C:0.08, G:0.06, T:0.06
Consensus pattern (27 bp):
AAAAAAACAAAAACAAAATAAAAAAGG
Found at i:32502600 original size:7 final size:7
Alignment explanation
Indices: 32502588--32502637 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
32502578 TAAAAAATGC
32502588 GAAAAAT
1 GAAAAAT
32502595 GAAAAAAT
1 G-AAAAAT
*
32502603 G-AAGAT
1 GAAAAAT
32502609 GAAAAAT
1 GAAAAAT
*
32502616 GAAAAAG
1 GAAAAAT
32502623 GAAAAA-
1 GAAAAAT
32502629 GTAAAAAT
1 G-AAAAAT
32502637 G
1 G
32502638 GAGAGGCTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
6 6 0.17
7 22 0.61
8 8 0.22
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (7 bp):
GAAAAAT
Found at i:32504043 original size:88 final size:88
Alignment explanation
Indices: 32503894--32504594 Score: 1055
Period size: 88 Copynumber: 8.0 Consensus size: 88
32503884 TCGAAAACAA
* * * * *
32503894 AGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATTTTGCCTTCCTACGCGGA
1 AGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGA
32503959 CAGCGAAGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* * * * *
32503982 AGCCTTACCTCCCTCGGTTGCAGTGGAGTAGGTTGAAGATAGCATATCTTGCCTTCCTACGCTGA
1 AGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGA
32504047 CAGCGAAGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* * *
32504070 TGCCTTGCCTCCCTGGGTTGCAGTGAAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGA
1 AGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGA
32504135 CAGCGAAGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
* *
32504158 AGCCTTGCCTCCCT-GGTTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCGCTG
1 AGCCTTGCCTCCCTCGG-TTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTG
*
32504222 ACAGCGAAACAGATCGAAGATACC
65 ACAGCGAAGCAGATCGAAGATACC
* * *
32504246 AGCCTTGCCTCCCTAGGTTTCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCGCTGA
1 AGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGA
32504311 CAGCGAAGCAGATCGAAGATACC
66 CAGCGAAGCAGATCGAAGATACC
*
32504334 AGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGATTGAAGATAGCAGATCTTGCCTTCCTGCACTGA
1 AGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGA
*
32504399 CAGCGAAGCAGATCGAGGATACC
66 CAGCGAAGCAGATCGAAGATACC
* *
32504422 AGCCTTGCCTCCCT-GAGTTGCAGTGGAGCAGGTTGAAGATTGCAGATCTTGCCTTCCTGTACTG
1 AGCCTTGCCTCCCTCG-GTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTG
* * * *
32504486 ATAGTGAAGCAGATCGAAGACACT
65 ACAGCGAAGCAGATCGAAGATACC
* * * * * * * *
32504510 AGCCTTACCTCCCTGGGTTGCAGCGGAGCAGGTTGAATATAACAAATCTTGCCTTCTTGTACTGA
1 AGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGA
32504575 CAGCGAAGCAGATCGAAGAT
66 CAGCGAAGCAGATCGAAGAT
32504595 TACAAGTCTT
Statistics
Matches: 564, Mismatches: 45, Indels: 8
0.91 0.07 0.01
Matches are distributed among these distances:
87 3 0.01
88 558 0.99
89 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (88 bp):
AGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACTGA
CAGCGAAGCAGATCGAAGATACC
Found at i:32504690 original size:44 final size:44
Alignment explanation
Indices: 32504589--32504699 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 44
32504579 GAAGCAGATC
* * *
32504589 GAAGATTACAAGTCTTATCTCCGTGACCAACAGTGGAATAGGTG
1 GAAGATTACAAGTCTCATCTCCCTGACCAACAGTAGAATAGGTG
* ** * *
32504633 GAAGACTGTAAGTCTCATCTCCCTGACCAGCAGTAGAATAGGTT
1 GAAGATTACAAGTCTCATCTCCCTGACCAACAGTAGAATAGGTG
32504677 GAAGATTACAAGTC-CTATCTCCC
1 GAAGATTACAAGTCTC-ATCTCCC
32504700 CGACATTGCA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 1 0.02
44 54 0.98
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (44 bp):
GAAGATTACAAGTCTCATCTCCCTGACCAACAGTAGAATAGGTG
Found at i:32504985 original size:21 final size:21
Alignment explanation
Indices: 32504959--32505001 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
32504949 GGCCCAAACA
*
32504959 CTAAACCCAATTAGCCTTAGC
1 CTAAACCCAATTAGCCTAAGC
32504980 CTAAACCCAATTAGCCTAAGC
1 CTAAACCCAATTAGCCTAAGC
32505001 C
1 C
32505002 CAATAACCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.35, G:0.09, T:0.21
Consensus pattern (21 bp):
CTAAACCCAATTAGCCTAAGC
Found at i:32504995 original size:15 final size:15
Alignment explanation
Indices: 32504975--32505005 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32504965 CCAATTAGCC
32504975 TTAGCCTAAACCCAA
1 TTAGCCTAAACCCAA
*
32504990 TTAGCCTAAGCCCAA
1 TTAGCCTAAACCCAA
32505005 T
1 T
32505006 AACCCTAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.32, G:0.10, T:0.23
Consensus pattern (15 bp):
TTAGCCTAAACCCAA
Found at i:32506023 original size:3 final size:3
Alignment explanation
Indices: 32506009--32506085 Score: 68
Period size: 3 Copynumber: 25.3 Consensus size: 3
32505999 TTTTTTAATT
* * *
32506009 TTA TTT TTA TTA TTA TTGA -TA TTA TTA TTA TT- TTA TCA CTA TTTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* *
32506054 TTA TTG TTA TTA TTA TTA TTA TAA TTGA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA T
32506086 AAGTCTATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
2 3 0.05
3 50 0.85
4 6 0.10
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:32507663 original size:19 final size:19
Alignment explanation
Indices: 32507624--32507673 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
32507614 AATCTGAGAC
32507624 AATTTTGAAACAAAATAGAA
1 AATTTTGAAA-AAAATAGAA
*
32507644 AATTTTGAAAAAATTAGAA
1 AATTTTGAAAAAAATAGAA
32507663 AATTTTGAAAA
1 AATTTTGAAAA
32507674 TAGGGATCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 19 0.66
20 10 0.34
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.30
Consensus pattern (19 bp):
AATTTTGAAAAAAATAGAA
Found at i:32509087 original size:25 final size:25
Alignment explanation
Indices: 32509034--32509087 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
32509024 ACAAAATTTC
* *
32509034 ATATTAACTACAATTAAAATAGAAC
1 ATATTAACTACAATTAAAATAAAAA
32509059 ATATTAA-TACAATATAAAATAAAAA
1 ATATTAACTACAAT-TAAAATAAAAA
32509084 ATAT
1 ATAT
32509088 ATGTATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (25 bp):
ATATTAACTACAATTAAAATAAAAA
Found at i:32513392 original size:207 final size:207
Alignment explanation
Indices: 32513037--32513426 Score: 559
Period size: 207 Copynumber: 1.9 Consensus size: 207
32513027 ATCAGAGCTA
* * * * * *
32513037 TTCTAGGTACAATTTTTATTACGAATTTGACTTCTTTAATCGGTGACAACTCAAGTAATTCTTTA
1 TTCTAGGTACAAGTTTGATTACAAATTTGACTTCTCTAATCAGTGACAACTCAAGTAATTCTTAA
* * **
32513102 GGAAACCCATCAACAAATTCTTTAACTATCGGTACTTGATCAATTTTCGATTCTAACACTCGTGA
66 AGAAACACATCAACAAATTCTTTAACTATCGACACTTGATCAATTTTCGATTCTAACACTCGTGA
** *
32513167 ATTAAGAATGTATGCAAGATACTCATCACAACCTTTTCTAATAAATTTTTGAGCTAAAAAAGTTG
131 AGCAAGAATGTATGCAAGATACTCATCACAACCTTTTCTAATAAATTTCTGAGCTAAAAAAGTTG
32513232 AAATCGAAACTG
196 AAATCGAAACTG
* * * *
32513244 TTCTAGGTACAAGTTTGATTACAAATTTGACTTCTCTGATTAGTGGCAAC-CTGAGTAATTCTTA
1 TTCTAGGTACAAGTTTGATTACAAATTTGACTTCTCTAATCAGTGACAACTC-AAGTAATTCTTA
*
32513308 AAGAAACACATCAGCAAATTCTTTAACTATCGACACTTGATCAATTTTCGATTCTAACAC-CTGT
65 AAGAAACACATCAACAAATTCTTTAACTATCGACACTTGATCAATTTTCGATTCTAACACTC-GT
* * *
32513372 GAAGCAAGAATGTATGCAAGATACTCATTACAACTTTTTCTAATCAATTTCTGAG
129 GAAGCAAGAATGTATGCAAGATACTCATCACAACCTTTTCTAATAAATTTCTGAG
32513427 TTAACAATGC
Statistics
Matches: 160, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
206 2 0.01
207 158 0.99
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (207 bp):
TTCTAGGTACAAGTTTGATTACAAATTTGACTTCTCTAATCAGTGACAACTCAAGTAATTCTTAA
AGAAACACATCAACAAATTCTTTAACTATCGACACTTGATCAATTTTCGATTCTAACACTCGTGA
AGCAAGAATGTATGCAAGATACTCATCACAACCTTTTCTAATAAATTTCTGAGCTAAAAAAGTTG
AAATCGAAACTG
Found at i:32518917 original size:43 final size:45
Alignment explanation
Indices: 32518869--32518970 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
32518859 AGTTCGCTTA
* *
32518869 TATGAATTTGTTATGTTTATG-AG-TTCTTCTATGAATCTGCATG
1 TATGAATCTGTTATGTTTATGAAGTTTCTTCTATGAATCCGCATG
* *
32518912 TATGAATCTGTCAAGTTTATGAAGTTTCTTCTATGAATCCGCATG
1 TATGAATCTGTTATGTTTATGAAGTTTCTTCTATGAATCCGCATG
*
32518957 TTTGAATCTGTTAT
1 TATGAATCTGTTAT
32518971 ATCCATGAAG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 18 0.36
44 2 0.04
45 30 0.60
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.46
Consensus pattern (45 bp):
TATGAATCTGTTATGTTTATGAAGTTTCTTCTATGAATCCGCATG
Found at i:32518979 original size:45 final size:45
Alignment explanation
Indices: 32518892--32518992 Score: 123
Period size: 45 Copynumber: 2.2 Consensus size: 45
32518882 TGTTTATGAG
* ** *
32518892 TTCTTCTATGAATCTGCATGTATGAATCTGTCAAGTTTATGAAGT
1 TTCTTCTATGAATCCGCATGTATGAATCTGTCAAGTCCATGAAGC
* *
32518937 TTCTTCTATGAATCCGCATGTTTGAATCTGTTATA-TCCATGAAGC
1 TTCTTCTATGAATCCGCATGTATGAATCTGTCA-AGTCCATGAAGC
*
32518982 TTCTTTTATGA
1 TTCTTCTATGA
32518993 GTTCGTATGT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 47 0.98
46 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.44
Consensus pattern (45 bp):
TTCTTCTATGAATCCGCATGTATGAATCTGTCAAGTCCATGAAGC
Found at i:32534717 original size:17 final size:17
Alignment explanation
Indices: 32534676--32534720 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 17
32534666 ACCTTTTAGG
32534676 AAATATAAATAAATCAAA
1 AAATA-AAATAAATCAAA
32534694 AAGATAAAATAAAT-AAA
1 AA-ATAAAATAAATCAAA
32534711 TAAATAAAAT
1 -AAATAAAAT
32534721 TTAAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 10 0.40
18 12 0.48
19 3 0.12
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (17 bp):
AAATAAAATAAATCAAA
Found at i:32545946 original size:13 final size:13
Alignment explanation
Indices: 32545891--32545963 Score: 76
Period size: 13 Copynumber: 5.5 Consensus size: 13
32545881 TCATACATCT
32545891 ATTTCCATATAACC
1 ATTT-CATATAACC
* *
32545905 AGTTCATACAACC
1 ATTTCATATAACC
32545918 GA-TTCATATAACC
1 -ATTTCATATAACC
*
32545931 ATTTCATATAATC
1 ATTTCATATAACC
* *
32545944 ATTTCATTTTACC
1 ATTTCATATAACC
32545957 ATTTCAT
1 ATTTCAT
32545964 TTACACATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
12 1 0.02
13 45 0.90
14 4 0.08
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.40
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:32549126 original size:40 final size:40
Alignment explanation
Indices: 32549082--32549220 Score: 170
Period size: 40 Copynumber: 3.5 Consensus size: 40
32549072 GAGTATAACT
* * * * *
32549082 AGGGGCAAAAAAGTGCAACCAGGGGTACCGGAGTACAAAC
1 AGGGGCACATAAGTGCAATCAAGGGTACCGAAGTACAAAC
* * * *
32549122 AGGGGCACATAGGAGCAATCAAGAGTACCGAAGTACAAAT
1 AGGGGCACATAAGTGCAATCAAGGGTACCGAAGTACAAAC
*
32549162 AGGGGCACGTAAGTGCAATCAAGGGTACCGAAGTACAAAC
1 AGGGGCACATAAGTGCAATCAAGGGTACCGAAGTACAAAC
* *
32549202 AGGGGCACGTGAGTGCAAT
1 AGGGGCACATAAGTGCAAT
32549221 TCAGGGGTGC
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 84 1.00
ACGTcount: A:0.38, C:0.19, G:0.32, T:0.12
Consensus pattern (40 bp):
AGGGGCACATAAGTGCAATCAAGGGTACCGAAGTACAAAC
Found at i:32555850 original size:21 final size:20
Alignment explanation
Indices: 32555826--32555875 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
32555816 ATTATGCCAA
32555826 TTTTTAACCTTAAAAACATCCT
1 TTTTTAACCTT-AAAACA-CCT
*
32555848 TTTTTAACATTAAAACACC-
1 TTTTTAACCTTAAAACACCT
*
32555867 CTTTTAACC
1 TTTTTAACC
32555876 AAACCTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 7 0.28
20 2 0.08
21 6 0.24
22 10 0.40
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTTTAACCTTAAAACACCT
Found at i:32555854 original size:22 final size:21
Alignment explanation
Indices: 32555826--32555871 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
32555816 ATTATGCCAA
* *
32555826 TTTTTAACCTTAAAAACATCCT
1 TTTTTAACATT-AAAACACCCT
32555848 TTTTTAACATTAAAACACCCT
1 TTTTTAACATTAAAACACCCT
32555869 TTT
1 TTT
32555872 AACCAAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (21 bp):
TTTTTAACATTAAAACACCCT
Found at i:32560276 original size:5 final size:5
Alignment explanation
Indices: 32560266--32560302 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
32560256 TATCACTTGA
*
32560266 ATTTT ATTTT A-TTT ATTTT ATGTT ATTTT ATTTT ATT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATT
32560303 ATTCTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:32560291 original size:10 final size:9
Alignment explanation
Indices: 32560268--32560298 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
32560258 TCACTTGAAT
32560268 TTTATTTTA
1 TTTATTTTA
32560277 TTTATTTTA
1 TTTATTTTA
32560286 TGTTATTTTA
1 T-TTATTTTA
32560296 TTT
1 TTT
32560299 TATTATTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (9 bp):
TTTATTTTA
Found at i:32570652 original size:128 final size:128
Alignment explanation
Indices: 32570424--32570671 Score: 379
Period size: 128 Copynumber: 1.9 Consensus size: 128
32570414 GTAAAATCAC
* ** *
32570424 AAGTCCTATATCCCTGGCCAGTAGTGGAATAGGTTGGAAACTATAGATCTTGTCTCCCTAAGCAG
1 AAGTCCTATATCCCTGACCAACAGTGGAATAGGTTGGAAACTACAGATCTTGTCTCCCTAAGCAG
*
32570489 TAGCGGAGCAGATCAAAGATGAAAAATCTTATCTTCAAGAGTAAGGAAGAAGATTTAAGGCAT
66 TAGCGGAGCAGATCAAAGACGAAAAATCTTATCTTCAAGAGTAAGGAAGAAGATTTAAGGCAT
*
32570552 AAGTCCTATATCCCTGACCAACAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAG
1 AAGTCCTATATCCCTGACCAACAGTGGAATAGGTTGGAAACTACAGATCTTGTCTCCCTAAGCAG
* * *** * *
32570617 TAGCGGAGTAGATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATT
66 TAGCGGAGCAGATCAAAGACGAAAAATCTTATCTTCAAGAGTAAGGAAGAAGATT
32570672 AAAGCTGATA
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
128 107 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (128 bp):
AAGTCCTATATCCCTGACCAACAGTGGAATAGGTTGGAAACTACAGATCTTGTCTCCCTAAGCAG
TAGCGGAGCAGATCAAAGACGAAAAATCTTATCTTCAAGAGTAAGGAAGAAGATTTAAGGCAT
Found at i:32570952 original size:44 final size:42
Alignment explanation
Indices: 32570814--32571219 Score: 187
Period size: 44 Copynumber: 9.4 Consensus size: 42
32570804 TAAGCAGGTA
* * * *
32570814 TTATCCCCCTGAATTTGCAGTGGGGAAGATTGAAGATGACA-AATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-A-GA-ATAATC
* *
32570859 TTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--AATAATC
* * * *
32570903 CTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-AATA-ATC
* * * ** * * *
32570947 TTATCTCTCTGAAGTTACAGTAGAGTGGA-T--CGCATCAGGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAT-A-ATC
* * * *
32570988 TTATCTCCTTGAGGTTGCAGTGGAGCAGACTCAGAA-AACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGAATAA-TC
* *** * * * *
32571032 TTATCCCCCTGAAGTCATAGTGGGGCAGACTGAAGAAGCAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAA--TAATC
* * *
32571076 TTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCGATAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG--AATAATC
* * **
32571120 CTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAGTAATAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-AATA-ATC
** * * * *
32571164 CAATCTCCCTGAAGTTGTAGTGGAGCGGA-TCAA-AATGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATAATC
* *
32571204 TCATCTCTCTGAAGTT
1 TTATCTCCCTGAAGTT
32571220 ACAATAGAGT
Statistics
Matches: 274, Mismatches: 70, Indels: 39
0.72 0.18 0.10
Matches are distributed among these distances:
40 18 0.07
41 30 0.11
42 3 0.01
43 14 0.05
44 179 0.65
45 29 0.11
46 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (42 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAATAATC
Found at i:32571042 original size:218 final size:217
Alignment explanation
Indices: 32570664--32571179 Score: 726
Period size: 218 Copynumber: 2.4 Consensus size: 217
32570654 AGTGTAAGGA
* * *
32570664 AGCAGATTAAAGCTGATAATCCTATCTCCCTAAAGTTGTAGTGGAGGGGATTAAAGTAATAAATC
1 AGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* *
32570729 TTATCTCTCTGAAGTTGCAGCAGAGTGAATCACATCGGGTCTTATCCCCCTGAAGTTGCAGCGGA
66 TTATCTCTCTGAAGTTACAGCAGAGTGAATCACATCAGGTCTTATCCCCCTGAAGTTGCAGCGGA
* * * * * ** * *
32570794 GCAGACTGAGTAAGCAGGTATTATCCCCCTGAATTTGCAGTGGGGAAGATTGAAGATGACAAATC
131 GCAGACTCAGAAAACAAGTATTATCCCCCTGAAGTCACAGTGGGGAAGACTGAAGAAG-CAAATC
32570859 TTATCTCCCTGAAGTTACAGTGG
195 TTATCTCCCTGAAGTTACAGTGG
32570882 AGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* * * * * * *
32570947 TTATCTCTCTGAAGTTACAGTAGAGTGGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGTGGA
66 TTATCTCTCTGAAGTTACAGCAGAGTGAATCACATCAGGTCTTATCCCCCTGAAGTTGCAGCGGA
* * *
32571012 GCAGACTCAGAAAACAAGTCTTATCCCCCTGAAGTCATAGTGGGGCAGACTGAAGAAGCAAATCT
131 GCAGACTCAGAAAACAAGTATTATCCCCCTGAAGTCACAGTGGGGAAGACTGAAGAAGCAAATCT
* *
32571077 TATCTCCCTGAGGTTGCAGTGG
196 TATCTCCCTGAAGTTACAGTGG
* * * *
32571099 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAGTAATAGATC
1 AGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
** *
32571164 CAATCTCCCTGAAGTT
66 TTATCTCTCTGAAGTT
32571180 GTAGTGGAGC
Statistics
Matches: 265, Mismatches: 33, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
217 101 0.38
218 164 0.62
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (217 bp):
AGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
TTATCTCTCTGAAGTTACAGCAGAGTGAATCACATCAGGTCTTATCCCCCTGAAGTTGCAGCGGA
GCAGACTCAGAAAACAAGTATTATCCCCCTGAAGTCACAGTGGGGAAGACTGAAGAAGCAAATCT
TATCTCCCTGAAGTTACAGTGG
Found at i:32577725 original size:5 final size:5
Alignment explanation
Indices: 32577710--32577775 Score: 50
Period size: 5 Copynumber: 14.0 Consensus size: 5
32577700 CACCAATTTG
* * * *
32577710 TTTTA TGTTA TTTTA TTTTA --TTA TGTTA TTTTA TTTTA TTATG TTTT-
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
* *
32577757 TGTAA TTTTA -TTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA
32577776 AGTAAAATGT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
3 3 0.06
4 6 0.13
5 38 0.81
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:32577735 original size:18 final size:18
Alignment explanation
Indices: 32577712--32577768 Score: 89
Period size: 18 Copynumber: 3.1 Consensus size: 18
32577702 CCAATTTGTT
32577712 TTATGTTATTTTATTTTA
1 TTATGTTATTTTATTTTA
32577730 TTATGTTATTTTATTTTA
1 TTATGTTATTTTATTTTA
32577748 TTATGTT-TTTGTAATTTTA
1 TTATGTTATTT-T-ATTTTA
32577767 TT
1 TT
32577769 TATTTTAAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
17 3 0.08
18 26 0.70
19 8 0.22
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (18 bp):
TTATGTTATTTTATTTTA
Found at i:32590852 original size:10 final size:10
Alignment explanation
Indices: 32590830--32590887 Score: 61
Period size: 10 Copynumber: 6.2 Consensus size: 10
32590820 ATATATTTTG
32590830 AAATTAT-AA
1 AAATTATAAA
32590839 AAATTATAAA
1 AAATTATAAA
32590849 AAA-T-T-AA
1 AAATTATAAA
*
32590856 AAATTATTAA
1 AAATTATAAA
*
32590866 AAATAATAAA
1 AAATTATAAA
*
32590876 AATTTATAAA
1 AAATTATAAA
32590886 AA
1 AA
32590888 TAATTTATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
7 5 0.12
8 2 0.05
9 9 0.22
10 25 0.61
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
AAATTATAAA
Found at i:32590854 original size:19 final size:19
Alignment explanation
Indices: 32590830--32590887 Score: 75
Period size: 17 Copynumber: 3.1 Consensus size: 19
32590820 ATATATTTTG
32590830 AAATTATAAAAATTATAAA
1 AAATTATAAAAATTATAAA
*
32590849 AAA-T-TAAAAATTATTAA
1 AAATTATAAAAATTATAAA
*
32590866 AAATAATAAAAATTTATAAA
1 AAATTATAAAAA-TTATAAA
32590886 AA
1 AA
32590888 TAATTTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
17 15 0.45
18 1 0.03
19 9 0.27
20 8 0.24
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATTATAAAAATTATAAA
Found at i:32590888 original size:10 final size:9
Alignment explanation
Indices: 32590830--32590888 Score: 75
Period size: 9 Copynumber: 6.4 Consensus size: 9
32590820 ATATATTTTG
32590830 AAATTATAA
1 AAATTATAA
32590839 AAATTATAA
1 AAATTATAA
*
32590848 AAAAT-TAA
1 AAATTATAA
32590856 AAATTATTAA
1 AAATTA-TAA
*
32590866 AAATAATAA
1 AAATTATAA
32590875 AAATTTATAA
1 AAA-TTATAA
32590885 AAAT
1 AAAT
32590889 AATTTATATG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
8 7 0.16
9 20 0.47
10 16 0.37
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATTATAA
Found at i:32590888 original size:19 final size:18
Alignment explanation
Indices: 32590830--32590891 Score: 81
Period size: 19 Copynumber: 3.4 Consensus size: 18
32590820 ATATATTTTG
*
32590830 AAATTATAAAAATTATAA
1 AAATAATAAAAATTATAA
*
32590848 AAA-ATTAAAAATTATTAA
1 AAATAATAAAAATTA-TAA
32590866 AAATAATAAAAATTTATAA
1 AAATAATAAAAA-TTATAA
32590885 AAATAAT
1 AAATAAT
32590892 TTATATGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
17 9 0.24
18 9 0.24
19 17 0.45
20 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATAATAAAAATTATAA
Found at i:32592340 original size:21 final size:21
Alignment explanation
Indices: 32592309--32592358 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
32592299 TTTATCATAC
* *
32592309 TAATA-ATTTTTTTATAGTAAT
1 TAATATATTTTTTAAAAG-AAT
32592330 TAATATATTTTTTAAAAGAAT
1 TAATATATTTTTTAAAAGAAT
32592351 TAATATAT
1 TAATATAT
32592359 ATAGAGAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (21 bp):
TAATATATTTTTTAAAAGAAT
Found at i:32605586 original size:14 final size:14
Alignment explanation
Indices: 32605569--32605624 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
32605559 CGCTTTTTGC
32605569 TTTTT-CTTTTTTT
1 TTTTTGCTTTTTTT
**
32605582 TTTTTGCGGTTTTT
1 TTTTTGCTTTTTTT
*
32605596 TTTTTGCGTTTTTTGC
1 TTTTTGC-TTTTTT-T
32605612 TTTTT-CTTTTTTT
1 TTTTTGCTTTTTTT
32605625 AAAGAATAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
13 5 0.15
14 19 0.56
15 5 0.15
16 5 0.15
ACGTcount: A:0.00, C:0.09, G:0.11, T:0.80
Consensus pattern (14 bp):
TTTTTGCTTTTTTT
Found at i:32605607 original size:29 final size:28
Alignment explanation
Indices: 32605551--32605609 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
32605541 GGTAGGCAAC
32605551 TTTTTTTGCGCTTTTTGCTTTTTCTTTTT
1 TTTTTTTGCGCTTTTT-CTTTTTCTTTTT
* *
32605580 TTTTTTTGCGGTTTTT-TTTTTGCGTTTT
1 TTTTTTTGCGCTTTTTCTTTTT-CTTTTT
32605608 TT
1 TT
32605610 GCTTTTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 5 0.19
28 7 0.26
29 15 0.56
ACGTcount: A:0.00, C:0.10, G:0.14, T:0.76
Consensus pattern (28 bp):
TTTTTTTGCGCTTTTTCTTTTTCTTTTT
Found at i:32609388 original size:25 final size:25
Alignment explanation
Indices: 32609360--32609408 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
32609350 TACAGCCTAT
* *
32609360 CTATAGTAGTCTCAGTATATACTAC
1 CTATAGCAGTCTCAGGATATACTAC
*
32609385 CTATAGCAGTTTCAGGATATACTA
1 CTATAGCAGTCTCAGGATATACTA
32609409 TCAAAATTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (25 bp):
CTATAGCAGTCTCAGGATATACTAC
Found at i:32612580 original size:26 final size:26
Alignment explanation
Indices: 32612551--32612614 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
32612541 CTAAACTTTT
32612551 AACCCAATACTTTATAATTTCAATCC
1 AACCCAATACTTTATAATTTCAATCC
32612577 AACCCAATACTTTATAATTTCAATCC
1 AACCCAATACTTTATAATTTCAATCC
32612603 AACCCAATACTT
1 AACCCAATACTT
32612615 GTTTTTCTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (26 bp):
AACCCAATACTTTATAATTTCAATCC
Found at i:32626621 original size:82 final size:81
Alignment explanation
Indices: 32626505--32626660 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
32626495 AAATTGTACA
* * * *
32626505 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
32626569 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32626586 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
32626651 TGCGAGTTGA
65 TGCGAATTGA
32626661 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32626628 original size:55 final size:52
Alignment explanation
Indices: 32626504--32626657 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
32626494 TAAATTGTAC
* *
32626504 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
32626557 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
32626612 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
32626658 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:32626662 original size:27 final size:27
Alignment explanation
Indices: 32626505--32626660 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
32626495 AAATTGTACA
*
32626505 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
32626532 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
32626559 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
32626586 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
32626614 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
32626641 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
32626661 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:32626671 original size:27 final size:27
Alignment explanation
Indices: 32626497--32626681 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
32626487 GCGGGATTAA
*
32626497 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
32626524 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
32626551 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
32626578 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
32626606 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
32626633 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
32626660 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
32626682 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:32626672 original size:82 final size:81
Alignment explanation
Indices: 32626497--32626681 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
32626487 GCGGGATTAA
* * * *
32626497 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
32626562 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
32626578 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
32626642 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
32626660 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
32626682 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:32634766 original size:82 final size:81
Alignment explanation
Indices: 32634650--32634805 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
32634640 AAATTGTACA
* * * *
32634650 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
32634714 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32634731 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
32634796 TGCGAGTTGA
65 TGCGAATTGA
32634806 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32634773 original size:55 final size:52
Alignment explanation
Indices: 32634649--32634802 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
32634639 TAAATTGTAC
* *
32634649 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
32634702 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
32634757 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
32634803 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:32634807 original size:27 final size:27
Alignment explanation
Indices: 32634650--32634805 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
32634640 AAATTGTACA
*
32634650 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
32634677 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
32634704 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
32634731 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
32634759 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
32634786 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
32634806 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:32634816 original size:27 final size:27
Alignment explanation
Indices: 32634642--32634826 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
32634632 GCGGGATTAA
*
32634642 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
32634669 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
32634696 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
32634723 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
32634751 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
32634778 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
32634805 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
32634827 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:32634817 original size:82 final size:81
Alignment explanation
Indices: 32634642--32634826 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
32634632 GCGGGATTAA
* * * *
32634642 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
32634707 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
32634723 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
32634787 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
32634805 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
32634827 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:32653572 original size:18 final size:20
Alignment explanation
Indices: 32653549--32653588 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
32653539 TATTGAATTC
32653549 AATTGAATT-A-ATAAATAT
1 AATTGAATTGAGATAAATAT
32653567 AATTGAATTGAGATAAATAT
1 AATTGAATTGAGATAAATAT
32653587 AA
1 AA
32653589 GAATAGGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 9 0.45
19 1 0.05
20 10 0.50
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (20 bp):
AATTGAATTGAGATAAATAT
Found at i:32665369 original size:13 final size:13
Alignment explanation
Indices: 32665349--32665381 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
32665339 ACTTTATTCT
32665349 AAAAAAAAA-GAA
1 AAAAAAAAATGAA
32665361 AAGAAAAAAATGAA
1 AA-AAAAAAATGAA
32665375 AAAAAAA
1 AAAAAAA
32665382 TTGATTGAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.11
13 12 0.63
14 5 0.26
ACGTcount: A:0.88, C:0.00, G:0.09, T:0.03
Consensus pattern (13 bp):
AAAAAAAAATGAA
Found at i:32669809 original size:12 final size:12
Alignment explanation
Indices: 32669792--32669825 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
32669782 TCAAACTCCA
32669792 AAGAATAAGAAG
1 AAGAATAAGAAG
*
32669804 AAGAATAAGATG
1 AAGAATAAGAAG
*
32669816 AAGAAGAAGA
1 AAGAATAAGA
32669826 GGAGGTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.26, T:0.09
Consensus pattern (12 bp):
AAGAATAAGAAG
Found at i:32676570 original size:74 final size:74
Alignment explanation
Indices: 32676388--32676577 Score: 193
Period size: 74 Copynumber: 2.6 Consensus size: 74
32676378 TACAAGTGAA
* * * * * * *
32676388 AATAATAGTGCCTGGTTAGTCGTTTGGGTTAATCCTACACAATAGATATCATTTGCTCATCCGAC
1 AATAATAGTGTCTGGTTACTCGTTTGGGTTAAACCTACACAACAAATATAAATTGCTCATCCGAC
32676453 CAAATCATG
66 CAAATCATG
* * * * * * * * *
32676462 AATAATAGTGTTTGGTTACCCGTTCGAGTAAAACCTACACGACAAATATAAATTGCTCGTCTGAG
1 AATAATAGTGTCTGGTTACTCGTTTGGGTTAAACCTACACAACAAATATAAATTGCTCATCCGAC
* *
32676527 CTAATTAT-
66 CAAATCATG
*
32676535 AATCAATAGTGTCTGGTTACTTGTTTGGGTTAAACCTACACAA
1 AAT-AATAGTGTCTGGTTACTCGTTTGGGTTAAACCTACACAA
32676578 TAGAGAGCCT
Statistics
Matches: 90, Mismatches: 25, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
73 3 0.03
74 87 0.97
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (74 bp):
AATAATAGTGTCTGGTTACTCGTTTGGGTTAAACCTACACAACAAATATAAATTGCTCATCCGAC
CAAATCATG
Found at i:32681098 original size:50 final size:50
Alignment explanation
Indices: 32680970--32681211 Score: 220
Period size: 50 Copynumber: 4.7 Consensus size: 50
32680960 CATAATAACA
* * *
32680970 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCTTAT-AC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATATCAG
* * *
32681019 TGCCAATGCCATATCCCATATATGGTCTTACATGGGAGTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCAG
* * ** ** *
32681069 TGCCCATGCCATGTCCCAGACATGATCTTACGGGGGACCTCTCATCTC-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCAG
* ***
32681118 ATGCCAATGCCATGTACCAGACATGGTCTTACATGGGACCCCTCATAATCTCAATG
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCAT-A--TC-A-G
**
32681174 ATGCCAATGCCATGTCTTAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
32681212 TCTCTTTACC
Statistics
Matches: 158, Mismatches: 26, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
48 3 0.02
49 39 0.25
50 78 0.49
53 2 0.01
56 36 0.23
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCAG
Found at i:32682538 original size:57 final size:57
Alignment explanation
Indices: 32682445--32682792 Score: 277
Period size: 57 Copynumber: 6.1 Consensus size: 57
32682435 CATGAAGATG
* * * * *
32682445 TCCTTTTAAAAAAGTTTACCAC-AAGGTATTCATTTAATTGAGATAGCCACAAAGGCT
1 TCCTTTTAAAAAAGATGACCACAAAGG-CTTCCTTTAATAGAGATAGCCACAAAGGCT
* *
32682502 TCCTTTTAAAAAAGATGACCATAAAGGCTTCCTTTAATAGAGATAGCCACGAAGGCT
1 TCCTTTTAAAAAAGATGACCACAAAGGCTTCCTTTAATAGAGATAGCCACAAAGGCT
* * * * ***
32682559 TCCTTTTAATAGAGAT-AGCCACGAAGGCTTCCTTTAACAGAGATCA-CCACAAATTAT
1 TCCTTTTAAAAAAGATGA-CCACAAAGGCTTCCTTTAATAGAGAT-AGCCACAAAGGCT
* * * * * *
32682616 TCCTTTTAATAGAGAT-AGCCATAAAGGCTTCC-TTAACAGAGGTAGCCACAAAGGTT
1 TCCTTTTAAAAAAGATGA-CCACAAAGGCTTCCTTTAATAGAGATAGCCACAAAGGCT
* * * * ** *
32682672 TCC-TTTAACACAGATTG-CCACAAAGACTTCCTTTTAAAAGACTTAACCACAAAGGCT
1 TCCTTTTAAAAAAGA-TGACCACAAAGGCTTCC-TTTAATAGAGATAGCCACAAAGGCT
* *
32682729 TCC-TTTAACACAGATCG-CCACAAAGGCTTCCTTTAATAGAGATAGCCA-AAATGGC-
1 TCCTTTTAAAAAAGAT-GACCACAAAGGCTTCCTTTAATAGAGATAGCCACAAA-GGCT
32682784 TCACTTTTA
1 TC-CTTTTA
32682793 CAGAAATTGA
Statistics
Matches: 243, Mismatches: 36, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
55 27 0.11
56 41 0.17
57 170 0.70
58 5 0.02
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (57 bp):
TCCTTTTAAAAAAGATGACCACAAAGGCTTCCTTTAATAGAGATAGCCACAAAGGCT
Found at i:32682556 original size:28 final size:28
Alignment explanation
Indices: 32682477--32682784 Score: 300
Period size: 28 Copynumber: 10.9 Consensus size: 28
32682467 AAGGTATTCA
*
32682477 TTTAATTGAGATAGCCACAAAGGCTTCC
1 TTTAATAGAGATAGCCACAAAGGCTTCC
* * *
32682505 TTTTAAAAAAGAT-GACCATAAAGGCTTCC
1 -TTTAATAGAGATAG-CCACAAAGGCTTCC
*
32682534 TTTAATAGAGATAGCCACGAAGGCTTCC
1 TTTAATAGAGATAGCCACAAAGGCTTCC
*
32682562 TTTTAATAGAGATAGCCACGAAGGCTTCC
1 -TTTAATAGAGATAGCCACAAAGGCTTCC
* ***
32682591 TTTAACAGAGATCA-CCACAAATTATTCC
1 TTTAATAGAGAT-AGCCACAAAGGCTTCC
*
32682619 TTTTAATAGAGATAGCCATAAAGGCTTCC
1 -TTTAATAGAGATAGCCACAAAGGCTTCC
* * *
32682648 -TTAACAGAGGTAGCCACAAAGGTTTCC
1 TTTAATAGAGATAGCCACAAAGGCTTCC
* * * *
32682675 TTTAACACAGATTGCCACAAAGACTTCC
1 TTTAATAGAGATAGCCACAAAGGCTTCC
* ** *
32682703 TTTTAAAAGACTTAACCACAAAGGCTTCC
1 -TTTAATAGAGATAGCCACAAAGGCTTCC
* * *
32682732 TTTAACACAGATCGCCACAAAGGCTTCC
1 TTTAATAGAGATAGCCACAAAGGCTTCC
32682760 TTTAATAGAGATAGCCA-AAATGGCT
1 TTTAATAGAGATAGCCACAAA-GGCT
32682785 CACTTTTACA
Statistics
Matches: 227, Mismatches: 43, Indels: 19
0.79 0.15 0.07
Matches are distributed among these distances:
27 26 0.11
28 107 0.47
29 94 0.41
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (28 bp):
TTTAATAGAGATAGCCACAAAGGCTTCC
Found at i:32682796 original size:141 final size:141
Alignment explanation
Indices: 32682477--32682784 Score: 361
Period size: 141 Copynumber: 2.2 Consensus size: 141
32682467 AAGGTATTCA
* * * * * * *
32682477 TTTAATTGAGATAGCCACAAAGGCTTCCTTTTAAAAAAGAT-GACCATAAAGGCTTCCTTTAATA
1 TTTAATAGAGATAGCCATAAAGGCTTCC--TTAACAGAGGTAG-CCACAAAGGCTTCCTTTAACA
* * * * * * * *
32682541 GAGATAGCCACGAAGGCTTCCTTTTAATAGAGATAGCCACGAAGGCTTCCTTTAACAGAGATCAC
63 CAGATAGCCACAAAGACTTCCTTTTAAAAGACATAACCACAAAGGCTTCCTTTAACACAGATCAC
**
32682606 CACAAATTATTCCT
128 CACAAAGGATTCCT
*
32682620 TTTAATAGAGATAGCCATAAAGGCTTCCTTAACAGAGGTAGCCACAAAGGTTTCCTTTAACACAG
1 TTTAATAGAGATAGCCATAAAGGCTTCCTTAACAGAGGTAGCCACAAAGGCTTCCTTTAACACAG
* * *
32682685 ATTGCCACAAAGACTTCCTTTTAAAAGACTTAACCACAAAGGCTTCCTTTAACACAGATCGCCAC
66 ATAGCCACAAAGACTTCCTTTTAAAAGACATAACCACAAAGGCTTCCTTTAACACAGATCACCAC
*
32682750 AAAGGCTTCC-
131 AAAGGATTCCT
32682760 TTTAATAGAGATAGCCA-AAATGGCT
1 TTTAATAGAGATAGCCATAAA-GGCT
32682785 CACTTTTACA
Statistics
Matches: 141, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
139 3 0.02
140 21 0.15
141 90 0.64
142 1 0.01
143 26 0.18
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (141 bp):
TTTAATAGAGATAGCCATAAAGGCTTCCTTAACAGAGGTAGCCACAAAGGCTTCCTTTAACACAG
ATAGCCACAAAGACTTCCTTTTAAAAGACATAACCACAAAGGCTTCCTTTAACACAGATCACCAC
AAAGGATTCCT
Found at i:32692040 original size:47 final size:47
Alignment explanation
Indices: 32691971--32692066 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
32691961 CCTTCTTTAG
32691971 TATAGAGTCTCTATTCCCAATTCCTTTTTAATATGGAATACGTAAAA
1 TATAGAGTCTCTATTCCCAATTCCTTTTTAATATGGAATACGTAAAA
32692018 TATAGAGTCTCTATTCCCAATTCCTTTTTAATATGGAATACGTAAAA
1 TATAGAGTCTCTATTCCCAATTCCTTTTTAATATGGAATACGTAAAA
32692065 TA
1 TA
32692067 GCATACAAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (47 bp):
TATAGAGTCTCTATTCCCAATTCCTTTTTAATATGGAATACGTAAAA
Found at i:32694523 original size:15 final size:15
Alignment explanation
Indices: 32694505--32694535 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32694495 TTCTGGTGGA
32694505 ATCATTTCAGGATTG
1 ATCATTTCAGGATTG
32694520 ATCATTTCAGGATTG
1 ATCATTTCAGGATTG
32694535 A
1 A
32694536 CCAAACATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (15 bp):
ATCATTTCAGGATTG
Found at i:32704144 original size:50 final size:51
Alignment explanation
Indices: 32704072--32704213 Score: 216
Period size: 51 Copynumber: 2.8 Consensus size: 51
32704062 ACTATTATCA
*
32704072 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * **
32704121 TTACGGTTCAGGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
1 TT-CGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
32704173 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTG
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTG
32704214 TTCATCGATA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 2 0.02
50 37 0.46
51 38 0.47
52 4 0.05
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (51 bp):
TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
Found at i:32719985 original size:51 final size:49
Alignment explanation
Indices: 32719848--32720040 Score: 224
Period size: 51 Copynumber: 3.8 Consensus size: 49
32719838 ACTATTATCA
* *
32719848 TTCGATACACATAGTAGCCTTCACATAGTACTACACATGTGATCAAGTT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGTT
* * **
32719897 TTACGGTTCAGGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
1 TT-CGATACACATAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TT
* * * * **
32719949 TTCGGTACACATAGTAGCCTTCACTTACTACTACACATGTGACCATTTTT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCA-AGTT
*
32719999 TATCGATACACGTAGTAGCCTTCACATAGTACTACACACGTG
1 T-TCGATACACATAGTAGCCTTCACATAGTACTACACACGTG
32720041 TTCATCGATA
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
49 2 0.02
50 40 0.33
51 74 0.62
52 4 0.03
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (49 bp):
TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAGTT
Found at i:32720000 original size:101 final size:102
Alignment explanation
Indices: 32719848--32720040 Score: 298
Period size: 101 Copynumber: 1.9 Consensus size: 102
32719838 ACTATTATCA
* * * * *
32719848 TTCGATACACATAGTAGCCTTCACATAGTACTACACATGTGATCAAGTTTTA-CGGTTCAGGTAG
1 TTCGATACACATAGTAGCCTTCACATACTACTACACATGTGACCAAGTTTTATCGATACACGTAG
32719912 TAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
66 TAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * **
32719949 TTCGGTACACATAGTAGCCTTCACTTACTACTACACATGTGACCATTTTTTATCGATACACGTAG
1 TTCGATACACATAGTAGCCTTCACATACTACTACACATGTGACCAAGTTTTATCGATACACGTAG
32720014 TAGCCTTCACATAGTACTACACACGTG
66 TAGCCTTCACATAGTACTACACACGTG
32720041 TTCATCGATA
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
101 46 0.56
102 36 0.44
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (102 bp):
TTCGATACACATAGTAGCCTTCACATACTACTACACATGTGACCAAGTTTTATCGATACACGTAG
TAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
Found at i:32721869 original size:37 final size:37
Alignment explanation
Indices: 32721827--32721901 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
32721817 TAACTTTAAA
*
32721827 CCCTATTACTTTTGTATGTAAATTTGATTGAATACCT
1 CCCTATTACTTCTGTATGTAAATTTGATTGAATACCT
*
32721864 CCCTATTACTTCTGTATGTAAATTTGATTGAATTCCT
1 CCCTATTACTTCTGTATGTAAATTTGATTGAATACCT
32721901 C
1 C
32721902 TAATAAGTGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.45
Consensus pattern (37 bp):
CCCTATTACTTCTGTATGTAAATTTGATTGAATACCT
Found at i:32722413 original size:15 final size:15
Alignment explanation
Indices: 32722395--32722429 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
32722385 CTTCGTATAA
*
32722395 TATTTTCTCAATATT
1 TATTTTCTCAAGATT
32722410 TATTTTCTCAAGATT
1 TATTTTCTCAAGATT
32722425 TATTT
1 TATTT
32722430 CCTCTTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.60
Consensus pattern (15 bp):
TATTTTCTCAAGATT
Found at i:32731545 original size:15 final size:15
Alignment explanation
Indices: 32731527--32731556 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32731517 ATCCTAAAAA
*
32731527 TTCTATTTCTATTTT
1 TTCTAGTTCTATTTT
32731542 TTCTAGTTCTATTTT
1 TTCTAGTTCTATTTT
32731557 CTTAGGACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.70
Consensus pattern (15 bp):
TTCTAGTTCTATTTT
Found at i:32732247 original size:12 final size:12
Alignment explanation
Indices: 32732230--32732254 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32732220 TGAGAATTTT
32732230 TTTCAAAAGAAA
1 TTTCAAAAGAAA
32732242 TTTCAAAAGAAA
1 TTTCAAAAGAAA
32732254 T
1 T
32732255 ACGTTGGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (12 bp):
TTTCAAAAGAAA
Found at i:32733128 original size:15 final size:16
Alignment explanation
Indices: 32733110--32733142 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32733100 TGAGTTAGTT
32733110 AAATC-AAGAAGTCTA
1 AAATCAAAGAAGTCTA
*
32733125 AAATCAAAGACGTCTA
1 AAATCAAAGAAGTCTA
32733141 AA
1 AA
32733143 GTATCAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.55, C:0.15, G:0.12, T:0.18
Consensus pattern (16 bp):
AAATCAAAGAAGTCTA
Found at i:32740746 original size:18 final size:19
Alignment explanation
Indices: 32740719--32740758 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
32740709 ATGGAAAAGT
32740719 ATGTGAAATGAAA-ATGAA
1 ATGTGAAATGAAATATGAA
*
32740737 ATGTGTAATGAAATATGAA
1 ATGTGAAATGAAATATGAA
32740756 ATG
1 ATG
32740759 ATAAATCTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.28
Consensus pattern (19 bp):
ATGTGAAATGAAATATGAA
Found at i:32744582 original size:17 final size:17
Alignment explanation
Indices: 32744560--32744598 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
32744550 TATAATTCAT
32744560 AAAAATTCAAAAAATAA
1 AAAAATTCAAAAAATAA
**
32744577 AAAAATTTTAAAAATAA
1 AAAAATTCAAAAAATAA
32744594 AAAAA
1 AAAAA
32744599 AATTTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAATTCAAAAAATAA
Found at i:32744610 original size:20 final size:20
Alignment explanation
Indices: 32744575--32744631 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
32744565 TTCAAAAAAT
32744575 AAAAAAATTTT-AAAAATAA
1 AAAAAAATTTTAAAAAATAA
*
32744594 AAAAAAATTTTAAAAAATCA
1 AAAAAAATTTTAAAAAATAA
* * *
32744614 TAAAAATTTTTAGAAAAT
1 AAAAAAATTTTAAAAAAT
32744632 TTATCCATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 11 0.33
20 22 0.67
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAAAAATTTTAAAAAATAA
Found at i:32744618 original size:19 final size:19
Alignment explanation
Indices: 32744568--32744623 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
32744558 ATAAAAATTC
32744568 AAAAAAT-AAAAAAATTTT
1 AAAAAATCAAAAAAATTTT
*
32744586 -AAAAATAAAAAAAAATTTT
1 AAAAAAT-CAAAAAAATTTT
*
32744605 AAAAAATCATAAAAATTTT
1 AAAAAATCAAAAAAATTTT
32744624 TAGAAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 6 0.18
19 21 0.64
20 6 0.18
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAAAATCAAAAAAATTTT
Found at i:32753533 original size:203 final size:206
Alignment explanation
Indices: 32753225--32753632 Score: 610
Period size: 203 Copynumber: 2.0 Consensus size: 206
32753215 AGAACTCAAT
** * *
32753225 ACCATTATCCATTCTCAACCGCTTTGCGGACTTTCCGGTTTGTTCTTCTAATAGTGTCTTCCACT
1 ACCATTATCCATTCTCAACCGCTTCACGGACTTTCCGATTTGTTCTTCTAACAGTGTCTTCCACT
* * * *
32753290 GTTTGAATATTCCAAAGACTTCACTTTTCTGTTTCAAAAAATAAAACCTAAC-TTTTT-TGGAGT
66 ATTTGAAGATTCCAAAAACTTCACTTTTCTGTTTCAAAAAATAAAACCAAACATTTTTCTGGAGT
32753353 GATCAT-AAGTAAAAGTTAGGAAATATTTATTACCTCCTTCTGAGATGCCAGAAGATGGA-CCCA
131 GATCATCAA-TAAAAGTTAGGAAATATTTATTACCTCCTTCTGAGATGCCAGAAGATGGACCCCA
32753416 TAAATCGAAATA
195 TAAATCGAAATA
* *
32753428 ACCATTA-CCAATTCTCAACTGCTTCACGGACTTTCTGATTTGTTCTTCTAACAGTGTCTTCCAC
1 ACCATTATCC-ATTCTCAACCGCTTCACGGACTTTCCGATTTGTTCTTCTAACAGTGTCTTCCAC
* ** *
32753492 TATTTGAAGATTCCAAAAATTTTGCTTTTCTGTTTCAAAAAATAAACCCAAACATTTTTCTGGAG
65 TATTTGAAGATTCCAAAAACTTCACTTTTCTGTTTCAAAAAATAAAACCAAACATTTTTCTGGAG
* * *
32753557 TGATCATCAATAAAGGTTAGGAAATATTTATTACCTCCTTTTGAGATGTCAGAAGATGGACCCCA
130 TGATCATCAATAAAAGTTAGGAAATATTTATTACCTCCTTCTGAGATGCCAGAAGATGGACCCCA
32753622 TAAATCGAAAT
195 TAAATCGAAAT
32753633 GAATGGAATC
Statistics
Matches: 183, Mismatches: 17, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
202 2 0.01
203 100 0.55
204 5 0.03
205 59 0.32
206 17 0.09
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (206 bp):
ACCATTATCCATTCTCAACCGCTTCACGGACTTTCCGATTTGTTCTTCTAACAGTGTCTTCCACT
ATTTGAAGATTCCAAAAACTTCACTTTTCTGTTTCAAAAAATAAAACCAAACATTTTTCTGGAGT
GATCATCAATAAAAGTTAGGAAATATTTATTACCTCCTTCTGAGATGCCAGAAGATGGACCCCAT
AAATCGAAATA
Found at i:32755280 original size:49 final size:49
Alignment explanation
Indices: 32755212--32755312 Score: 150
Period size: 49 Copynumber: 2.1 Consensus size: 49
32755202 TCTTATAGAG
* *
32755212 AACATATGGAAAGCATT-AAACACGTTATATTCTTTCCAAAAATAATTAT
1 AACATATGGAAAGCATTAAAAAACGTTATATTCTTTCC-AAAAGAATTAT
* *
32755261 AACATATGGAAAGTATTAAAAAATGTTATATTCTTTCCAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAAACGTTATATTCTTTCCAAAAGAATTAT
32755310 AAC
1 AAC
32755313 TACCATGTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
49 29 0.62
50 18 0.38
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.33
Consensus pattern (49 bp):
AACATATGGAAAGCATTAAAAAACGTTATATTCTTTCCAAAAGAATTAT
Found at i:32769636 original size:27 final size:27
Alignment explanation
Indices: 32769606--32769685 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
32769596 ATTCCTTCCC
*
32769606 ATAGATCGCAACAAAGGTTTCCATTCT
1 ATAGATCGCAACAAAGGCTTCCATTCT
* *
32769633 ATAGATTGCTACAAAGGCTTCCATTTTCT
1 ATAGATCGCAACAAAGGCTTCCA--TTCT
* * *
32769662 -TAGATTGCCACAAAGTCTTCCATT
1 ATAGATCGCAACAAAGGCTTCCATT
32769686 TTCTTATATT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.04
27 20 0.43
28 20 0.43
29 4 0.09
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.34
Consensus pattern (27 bp):
ATAGATCGCAACAAAGGCTTCCATTCT
Found at i:32769674 original size:28 final size:28
Alignment explanation
Indices: 32769607--32769735 Score: 138
Period size: 28 Copynumber: 4.6 Consensus size: 28
32769597 TTCCTTCCCA
* * *
32769607 TAGATCGCAACAAAGGTTTCCA--TTCT
1 TAGATTGCCACAAAGGCTTCCATTTTCT
*
32769633 ATAGATTGCTACAAAGGCTTCCATTTTCT
1 -TAGATTGCCACAAAGGCTTCCATTTTCT
*
32769662 TAGATTGCCACAAAGTCTTCCATTTTCT
1 TAGATTGCCACAAAGGCTTCCATTTTCT
* *
32769690 TATATTGCCACAAAGGCCTCCATTTTCCT
1 TAGATTGCCACAAAGGCTTCCATTTT-CT
* *
32769719 T-GATTTCCATAAAGGCT
1 TAGATTGCCACAAAGGCT
32769736 ACTATCTTTC
Statistics
Matches: 87, Mismatches: 12, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
27 19 0.22
28 61 0.70
29 7 0.08
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (28 bp):
TAGATTGCCACAAAGGCTTCCATTTTCT
Found at i:32770663 original size:2 final size:2
Alignment explanation
Indices: 32770656--32770691 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
32770646 AAGAATATAA
*
32770656 CT CT CT CT CT CT CT CT CT CT CT CT CA CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
32770692 TTCTAAAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.03, C:0.50, G:0.00, T:0.47
Consensus pattern (2 bp):
CT
Found at i:32777278 original size:5 final size:5
Alignment explanation
Indices: 32777264--32777307 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
32777254 TTCTCCTATT
* * *
32777264 TTCTT TTCTC TTCTC TACTC ATCTC TTCTC TTCTCC TTCTC TTC
1 TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTCT-C TTCTC TTC
32777308 ATTCTAGTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
5 28 0.85
6 5 0.15
ACGTcount: A:0.05, C:0.39, G:0.00, T:0.57
Consensus pattern (5 bp):
TTCTC
Found at i:32778345 original size:28 final size:28
Alignment explanation
Indices: 32778299--32778365 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
32778289 TACTGCATTG
* *
32778299 CACTGATTACTGTATTGGGCTAAGGCCCA
1 CACTG-TTACTATAATGGGCTAAGGCCCA
32778328 CACTGTTACTATAATGGGCTAAGGCCCA
1 CACTGTTACTATAATGGGCTAAGGCCCA
*
32778356 CATTG-TACTA
1 CACTGTTACTA
32778366 ATATTGTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
27 5 0.14
28 25 0.71
29 5 0.14
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (28 bp):
CACTGTTACTATAATGGGCTAAGGCCCA
Found at i:32782869 original size:50 final size:50
Alignment explanation
Indices: 32782808--32784312 Score: 1911
Period size: 50 Copynumber: 29.6 Consensus size: 50
32782798 AATGTCATAC
* * ** * * * *
32782808 CCCAGATATGGTCATACATGGGAGTTCTCATATCAGTGCCCATGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * * * *
32782858 CCCAGACATGGTCTTACATAGGACCTCTTATCTCAGTGACAACACCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
*
32782908 CCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAA-GACCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG-CCATGT
* * *
32782958 CCCGGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAACGCCATGT
* * *
32783014 CCAAGACATGGTCTTATATGAGACCTCTCATCTCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * *
32783064 CCCAGACATGGTCTTACATGGGACCTCTCATCTCCGTACCAATGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * * * *
32783114 CCCAGACATGTTCTTACATGAGACTTCTGATCTCGGTGCCAACGCCATTT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * *
32783164 CCCAGACATGGTCTTACATGGAACCTTTCATCTCGGTGCCAATGCCATG-
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * * * *
32783213 CCCTAGACATGGTCTTACATTGGACCTCTGATCTCAGTGCCAACACAATGT
1 CCC-AGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * * **
32783264 CCCAAACATGGTCTTACATGGGACCTTTGATCTCAATGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
*
32783314 CCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAA-GACCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACG-CCATGT
*
32783364 CCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* *
32783414 CCCAGACATGGTATTACATGAGACCTCTCATCTCGGTGCCATA-GCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCA-ACGCCATGT
* *
32783464 CCTAGATATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * *
32783514 CCCAAACATGGTCTTACATGGGACATCTCATCTCGGTGCTAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * * * *
32783564 CCCAAACATGGTCTTACATGAGACCTCTCATAATCTCAATGATGCCAATGCCATAT
1 CCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAACGCCATGT
* * * *
32783620 CCCAGAAATGGTCTTACATGGGATCTCTCATATTGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * *
32783670 CCCAGACATTGTCTTACATGGGACCTCTGATCTCGGTACCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
*
32783720 CCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * * * *
32783770 TCCAGAAATTGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAACGCCATGT
* * * *
32783826 ACCAGACATGCTCTTACATGGGACCTCTCATCTCAGTGCCGACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * *
32783876 CCTAGACATGGTTTTACATGGGACCTCTCATTTCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
*
32783926 CCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
32783976 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
** *
32784026 CCCAGACATGGTCTTATGTGGGACCTCTCATCCCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* * * *
32784076 GCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATTCCAATGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAACGCCATGT
* * * * *
32784132 CCCAAACATGGTATTACACGGGAACTCTTATCTCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* *
32784182 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGTCAAGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
*
32784232 CCCAGACATGGTCTTACATAGGACCTCTCATCTCGGTGCCAACGCCATGT
1 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
32784282 CCCAGACATGGTCTTACATGGGACCTCTCAT
1 CCCAGACATGGTCTTACATGGGACCTCTCAT
32784313 AATCTCAATG
Statistics
Matches: 1263, Mismatches: 160, Indels: 64
0.85 0.11 0.04
Matches are distributed among these distances:
49 5 0.00
50 1066 0.84
51 5 0.00
53 37 0.03
56 149 0.12
57 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
Found at i:32783723 original size:306 final size:302
Alignment explanation
Indices: 32782808--32784312 Score: 1940
Period size: 306 Copynumber: 4.9 Consensus size: 302
32782798 AATGTCATAC
* * * ** * * * *
32782808 CCCAGATATGGTCATACATGGGAGTTCTCATATCAGTGCCCATGCCATGTCCCAGACATGGTCTT
1 CCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATGT-CCAGACATGGTCTT
* * * * **
32782873 ACATAGGACCTCTTATCTCAGTGACAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCA
65 ACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCA
*
32782938 TCTCAGTGCCAA-GACCATGTCCCGGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATG
130 TCTCAGTGCCAACG-CCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-ATCTC-A-GATG
* * * * *
32783002 CCAATGCCATGTCCAAGACATGGTCTTATATGAGACCTCTCATCTCGGTGCCAACGCCATGTCCC
191 CCAACGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGTCCC
* *
32783067 AGACATGGTCTTACATGGGACCTCTCATCTCCGTACCAATGCCATGT
256 AGACATGGTCTTACATGGGACCTCTCATCTCGGTACCAACGCCATGT
* * * *
32783114 CCCAGACATGTTCTTACATGAGACTTCTGATCTCGGTGCCAACGCCATTTCCCAGACATGGTCTT
1 CCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATGT-CCAGACATGGTCTT
* * * *
32783179 ACATGGAACCTTTCATCTCGGTGCCAATGCCATG-CCCTAGACATGGTCTTACATTGGACCTCTG
65 ACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCC-AGACATGGTCTTACATGGGACCTCTC
* * *
32783243 ATCTCAGTGCCAACACAATGTCCCAAACATGGTCTTACATGGGACCT-T--TGATCTCA-ATGCC
129 ATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-ATCTCAGATGCC
32783304 AACGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAA-GACCATGTCCCA
193 AACGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACG-CCATGTCCCA
* *
32783368 GACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGT
257 GACATGGTCTTACATGGGACCTCTCATCTCGGTACCAACGCCATGT
* *
32783414 CCCAGACATGGTATTACATGAGACCTCTCATCTCGGTGCCATA-GCCATGTCCTAGATATGGTCT
1 CCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCA-ACGCCATGTCC-AGACATGGTCT
* * *
32783478 TACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACATCTC
64 TACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
* * * *
32783543 ATCTCGGTGCTAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCATAATCTCAATGATG
129 ATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-ATCTC-A-GATG
* * * * * *
32783608 CCAATGCCATATCCCAGAAATGGTCTTACATGGGATCTCTCATATTGGTGCCAACGCCATGTCCC
191 CCAACGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGTCCC
* *
32783673 AGACATTGTCTTACATGGGACCTCTGATCTCGGTACCAACGCCATGT
256 AGACATGGTCTTACATGGGACCTCTCATCTCGGTACCAACGCCATGT
* *
32783720 CCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATGTTCCAGAAATTGTCTT
1 CCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATG-TCCAGACATGGTCTT
* * *
32783785 ACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATGTACCAGACATGCTCTTACATGGGAC
65 ACATGGGACCTCTC---ATCTC---GGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAC
* * * *
32783850 CTCTCATCTCAGTGCCGACGCCATGTCCTAGACATGGTTTTACATGGGACCTCTCAT-T-TC-GG
124 CTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTCAGA
32783912 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGTC
189 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGTC
*
32783977 CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
254 CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTACCAACGCCATGT
** * *
32784026 CCCAGACATGGTCTTATGTGGGACCTCTCATCCCGGTGCCAACGCCATGTGCCAGACATGGTCTT
1 CCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATGT-CCAGACATGGTCTT
* * * * * *
32784091 ACATGGGACCTCTCATAATCTCAATGATTCCAATGCCATGTCCCAAACATGGTATTACACGGGAA
65 ACATGGGACCTCTC---ATCTC---GGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAC
* * *
32784156 CTCTTATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--ATCTC-GG
124 CTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTCAGA
* * * *
32784218 TGCCAACGTCAAGTCCCAGACATGGTCTTACATAGGACCTCTCATCTCGGTGCCAACGCCATGTC
189 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGTC
32784283 CCAGACATGGTCTTACATGGGACCTCTCAT
254 CCAGACATGGTCTTACATGGGACCTCTCAT
32784313 AATCTCAATG
Statistics
Matches: 1063, Mismatches: 112, Indels: 48
0.87 0.09 0.04
Matches are distributed among these distances:
299 3 0.00
300 253 0.24
301 5 0.00
302 1 0.00
303 12 0.01
304 1 0.00
305 7 0.01
306 685 0.64
307 4 0.00
309 7 0.01
310 1 0.00
312 84 0.08
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (302 bp):
CCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATGTCCAGACATGGTCTTA
CATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
CTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCTCAGATGCCAAC
GCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGTCCCAGACA
TGGTCTTACATGGGACCTCTCATCTCGGTACCAACGCCATGT
Found at i:32784313 original size:206 final size:201
Alignment explanation
Indices: 32782794--32784455 Score: 1833
Period size: 206 Copynumber: 8.1 Consensus size: 201
32782784 TTTTCTATAC
* ** * * ** * * * *
32782794 TGCCAATGTCATACCCCAGATATGGTCATACATGGGAGTTCTCATATCAGTGCCCATGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
* *
32782859 CCAGACATGGTCTTACATAGGACCTCT-TATCTCAGTGA--CAACACCATGTCCCAGACATGGTC
66 CCAGACATGGTCTTACATGGGACCTCTCTATCTC--TGATCCAACGCCATGTCCCAGACATGGTC
* * *
32782921 TTACATGGGACCTCTCATCTCAGTGCCAA-GACCATGTCCCGGACATGGTCTTACATGGGACCTC
129 TTACATGGGAACTCTCATCTCGGTGCCAACG-CCATGTCCCAGACATGGTCTTACATGGGACCTC
*
32782985 TCATAATCTCAATGA
193 TC---ATCTC---GG
* * *
32783000 TGCCAATGCCATGTCCAAGACATGGTCTTATATGAGACCTCTCATCTCGGTGCCAACGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
* * *
32783065 CCAGACATGGTCTTACATGGGACCTCTC-ATCTCCG-TACCAATGCCATGTCCCAGACATGTTCT
66 CCAGACATGGTCTTACATGGGACCTCTCTATCTCTGAT-CCAACGCCATGTCCCAGACATGGTCT
* * * * *
32783128 TACATGAG-ACTTCTGATCTCGGTGCCAACGCCATTTCCCAGACATGGTCTTACATGGAACCTTT
130 TACATGGGAAC-TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
32783192 CATCTCGG
194 CATCTCGG
* * * * *
32783200 TGCCAATGCCATG-CCCTAGACATGGTCTTACATTGGACCTCTGATCTCAGTGCCAACACAATGT
1 TGCCAATGCCATGTCCC-AGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGT
* *
32783264 CCCAAACATGGTCTTACATGGGACCT-T-TGATCTC-AATGCCAACGCCATGTCCCAGACATGGT
65 CCCAGACATGGTCTTACATGGGACCTCTCT-ATCTCTGAT-CCAACGCCATGTCCCAGACATGGT
*
32783326 CTTACATGGGAACTCTCATCTCGGTGCCAA-GACCATGTCCCAGACATGGTCTTACATGGGAACT
128 CTTACATGGGAACTCTCATCTCGGTGCCAACG-CCATGTCCCAGACATGGTCTTACATGGGACCT
32783390 CTCATCTCGG
192 CTCATCTCGG
* * *
32783400 TGCCAACGCCATGTCCCAGACATGGTATTACATGAGACCTCTCATCTCGGTGCCATA-GCCATGT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCA-ACGCCATGT
* * * *
32783464 CCTAGATATGGTCTTACATGGGACCTCTC-ATCTC-GGTGCCAACGCCATGTCCCAAACATGGTC
65 CCCAGACATGGTCTTACATGGGACCTCTCTATCTCTGAT-CCAACGCCATGTCCCAGACATGGTC
* * *
32783527 TTACATGGG-ACATCTCATCTCGGTGCTAACGCCATGTCCCAAACATGGTCTTACATGAGACCTC
129 TTACATGGGAAC-TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTC
*
32783591 TCATAATCTCAATGA
193 TC---ATCTC---GG
* * * * *
32783606 TGCCAATGCCATATCCCAGAAATGGTCTTACATGGGATCTCTCATATTGGTGCCAACGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
* * *
32783671 CCAGACATTGTCTTACATGGGACCTCT-GATCTC-GGTACCAACGCCATGTCCCAGACATGGTCT
66 CCAGACATGGTCTTACATGGGACCTCTCTATCTCTGAT-CCAACGCCATGTCCCAGACATGGTCT
* * * * *
32783734 TACATGAGACCTCTCATCTCGGTGCCAACGCCATGTTCCAGAAATTGTCTTACATGGGACCTCTC
130 TACATGGGAACTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
*
32783799 ATAATCTCAATGA
195 ---ATCTC---GG
* * * *
32783812 TGCCAATGCCATGTACCAGACATGCTCTTACATGGGACCTCTCATCTCAGTGCCGACGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
* * * *
32783877 CTAGACATGGTTTTACATGGGACCTCTC-ATTTC-GGTGCCAACGCCATGTCCCAGACATGGTCT
66 CCAGACATGGTCTTACATGGGACCTCTCTATCTCTGAT-CCAACGCCATGTCCCAGACATGGTCT
32783940 TACATGGGAACTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
130 TACATGGGAACTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
32784005 ATCTCGG
195 ATCTCGG
* ** * *
32784012 TGCCAACGCCATGTCCCAGACATGGTCTTATGTGGGACCTCTCATCCCGGTGCCAACGCCATGTG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
* *
32784077 CCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATTCCAATGCCATGTCCCAAACATG
66 CCAGACATGGTCTTACATGGGACCTCTC-T-ATCTC--TGA-TCCAACGCCATGTCCCAGACATG
* * *
32784142 GTATTACACGGGAACTCTTATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
126 GTCTTACATGGGAACTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
32784207 TCTCATCTCGG
191 TCTCATCTCGG
* * * *
32784218 TGCCAACGTCAAGTCCCAGACATGGTCTTACATAGGACCTCTCATCTCGGTGCCAACGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
** ** *
32784283 CCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGAAATTCCATGT-CCAAACATGG
66 CCAGACATGGTCTTACATGGGACCTCTC-T-ATCTC--TGATCCAACGCCATGTCCCAGACATGG
* * * * * *
32784347 TGTTACATAGGACCTCTCATAATCTCAATGATGCCAATGCCATGTCCTAGACATGGTCTTACACT
127 TCTTACATGGGAACTCTC---ATCTC---GGTGCCAACGCCATGTCCCAGACATGGTCTTACA-T
* * *
32784412 -GG--CTCACATATCGA
185 GGGACCTCTCATCTCGG
* *
32784426 TGTCGATGCCATGTCCCAGACATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
32784456 TACTAAATTA
Statistics
Matches: 1263, Mismatches: 151, Indels: 82
0.84 0.10 0.05
Matches are distributed among these distances:
199 6 0.00
200 414 0.33
201 8 0.01
203 19 0.02
204 24 0.02
205 12 0.01
206 704 0.56
207 8 0.01
208 34 0.03
210 33 0.03
211 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (201 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
CCAGACATGGTCTTACATGGGACCTCTCTATCTCTGATCCAACGCCATGTCCCAGACATGGTCTT
ACATGGGAACTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCA
TCTCGG
Found at i:32784336 original size:55 final size:56
Alignment explanation
Indices: 32784275--32784409 Score: 202
Period size: 54 Copynumber: 2.4 Consensus size: 56
32784265 CGGTGCCAAC
*
32784275 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATG-AAAT
1 GCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATAATCTCAATGATGCAAAT
* * * *
32784330 TCCATGT-CCAAACATGGTGTTACATAGGACCTCTCATAATCTCAATGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATAATCTCAATGATGCAAAT
*
32784385 GCCATGTCCTAGACATGGTCTTACA
1 GCCATGTCCCAGACATGGTCTTACA
32784410 CTGGCTCACA
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
54 40 0.58
55 15 0.22
56 14 0.20
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (56 bp):
GCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATAATCTCAATGATGCAAAT
Found at i:32786048 original size:37 final size:37
Alignment explanation
Indices: 32786006--32786080 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
32785996 GAGATCTGCA
32786006 AATTTTCAATAAAACTAGACACACATATGTTATTACC
1 AATTTTCAATAAAACTAGACACACATATGTTATTACC
32786043 AATTTTCAATAAAACTAGACACACATATGTTATTACC
1 AATTTTCAATAAAACTAGACACACATATGTTATTACC
32786080 A
1 A
32786081 TAAATTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (37 bp):
AATTTTCAATAAAACTAGACACACATATGTTATTACC
Found at i:32787071 original size:26 final size:26
Alignment explanation
Indices: 32787042--32787095 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
32787032 GATCATTTAA
32787042 AAATCAAATTAAAATATTAATAAACT
1 AAATCAAATTAAAATATTAATAAACT
32787068 AAATCAAATTAAAATATTAATAAACT
1 AAATCAAATTAAAATATTAATAAACT
32787094 AA
1 AA
32787096 TATTTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (26 bp):
AAATCAAATTAAAATATTAATAAACT
Found at i:32788881 original size:124 final size:124
Alignment explanation
Indices: 32788661--32788910 Score: 484
Period size: 124 Copynumber: 2.0 Consensus size: 124
32788651 GGACGATGTC
32788661 GTGGAACATTGGCAGAGGTGTTTGTAACAATGAGGCGAGGCAGCCAGCACTGGTTTATGCTACTC
1 GTGGAACATTGGCAGAGGTGTTTGTAACAATGAGGCGAGGCAGCCAGCACTGGTTTATGCTACTC
32788726 GTTACCGAGAGGATGGTGATGCTCTATATGTTATAACTGGTACGTTCCTAATTCATAAT
66 GTTACCGAGAGGATGGTGATGCTCTATATGTTATAACTGGTACGTTCCTAATTCATAAT
32788785 GTGGAACATTAGGCAGAGGTG-TTGTAACAATGAGGCGAGGCAGCCAGCACTGGTTTATGCTACT
1 GTGGAACATT-GGCAGAGGTGTTTGTAACAATGAGGCGAGGCAGCCAGCACTGGTTTATGCTACT
32788849 CGTTACCGAGAGGATGGTGATGCTCTATATGTTATAACTGGTACGTTCCTAATTCATAAT
65 CGTTACCGAGAGGATGGTGATGCTCTATATGTTATAACTGGTACGTTCCTAATTCATAAT
32788909 GT
1 GT
32788911 ACCTTACACT
Statistics
Matches: 125, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
124 115 0.92
125 10 0.08
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (124 bp):
GTGGAACATTGGCAGAGGTGTTTGTAACAATGAGGCGAGGCAGCCAGCACTGGTTTATGCTACTC
GTTACCGAGAGGATGGTGATGCTCTATATGTTATAACTGGTACGTTCCTAATTCATAAT
Done.