Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 105 of 211
Found at i:32790123 original size:23 final size:23
Alignment explanation
Indices: 32790085--32790135 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
32790075 GGTCAGGTGG
* *
32790085 TGTAATATCCCTAAAATTACTAT
1 TGTAATACCCCGAAAATTACTAT
32790108 TGTAATACCCCGAAAATTACTAT
1 TGTAATACCCCGAAAATTACTAT
*
32790131 AGTAA
1 TGTAA
32790136 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAT
Found at i:32792407 original size:13 final size:13
Alignment explanation
Indices: 32792389--32792418 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32792379 GGTCTGGCTA
32792389 TTTTGTTGAGGGG
1 TTTTGTTGAGGGG
32792402 TTTTGTTGAGGGG
1 TTTTGTTGAGGGG
32792415 TTTT
1 TTTT
32792419 CCTTGATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.07, C:0.00, G:0.40, T:0.53
Consensus pattern (13 bp):
TTTTGTTGAGGGG
Found at i:32795451 original size:27 final size:27
Alignment explanation
Indices: 32795407--32795641 Score: 246
Period size: 27 Copynumber: 8.8 Consensus size: 27
32795397 TGCGATTCAT
* *
32795407 GGGTAAAATGATCAAAATACCCTTGAA
1 GGGTAAAATGACCGAAATACCCTTGAA
**
32795434 GGGTAAAATGACCGAAATACCCTCAAA
1 GGGTAAAATGACCGAAATACCCTTGAA
* *
32795461 GGGTAAAATGACCAAAATATCCC-TAAA
1 GGGTAAAATGACCGAAATA-CCCTTGAA
*
32795488 GGGTAAAATGATCGAAATACCC--GAA
1 GGGTAAAATGACCGAAATACCCTTGAA
* * *
32795513 GGGTAAAATAATCAAAATACCCTTGAA
1 GGGTAAAATGACCGAAATACCCTTGAA
*
32795540 GGGTAAAATGATCGAAATA-CCTTCGAA
1 GGGTAAAATGACCGAAATACCCTT-GAA
* * **
32795567 GGGTAAAATGTCTGAAATACCCCCGAA
1 GGGTAAAATGACCGAAATACCCTTGAA
* * *
32795594 GGGTAAAATTA-CAAAATAACCTTGAA
1 GGGTAAAATGACCGAAATACCCTTGAA
*
32795620 GGGTAAAATGACCGACATACCC
1 GGGTAAAATGACCGAAATACCC
32795642 CCATAGGATA
Statistics
Matches: 173, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
25 22 0.13
26 27 0.16
27 119 0.69
28 5 0.03
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCTTGAA
Found at i:32795490 original size:54 final size:54
Alignment explanation
Indices: 32795407--32795641 Score: 271
Period size: 54 Copynumber: 4.4 Consensus size: 54
32795397 TGCGATTCAT
* * *
32795407 GGGTAAAATGATCAAAATACCCTTGAAGGGTAAAATGACCGAAATACCCTCAAA
1 GGGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGATCGAAATACCCTCGAA
*
32795461 GGGTAAAATGACCAAAATATCCC-TAAAGGGTAAAATGATCGAAATA-CC-CGAA
1 GGGTAAAATGACCAAAATA-CCCTTGAAGGGTAAAATGATCGAAATACCCTCGAA
* * *
32795513 GGGTAAAATAATCAAAATACCCTTGAAGGGTAAAATGATCGAAATACCTTCGAA
1 GGGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGATCGAAATACCCTCGAA
* ** ** * * * *
32795567 GGGTAAAATGTCTGAAATACCCCCGAAGGGTAAAATTA-CAAAATAACCTTGAA
1 GGGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGATCGAAATACCCTCGAA
* *
32795620 GGGTAAAATGACCGACATACCC
1 GGGTAAAATGACCAAAATACCC
32795642 CCATAGGATA
Statistics
Matches: 154, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
51 3 0.02
52 42 0.27
53 33 0.21
54 73 0.47
55 3 0.02
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (54 bp):
GGGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGATCGAAATACCCTCGAA
Found at i:32795596 original size:106 final size:107
Alignment explanation
Indices: 32795407--32795628 Score: 304
Period size: 106 Copynumber: 2.1 Consensus size: 107
32795397 TGCGATTCAT
*
32795407 GGGTAAAATGATCAAAATACCCTTGAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGA
1 GGGTAAAATAATCAAAATACCCTTGAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGA
* * *
32795472 CCAAAATATCCCTAAAGGGTAAAATGATCGAAAT-ACC-CGAA
66 CCAAAATACCCCCAAAGGGTAAAATGA-CAAAATAACCTCGAA
* * * *
32795513 GGGTAAAATAATCAAAATACCCTTGAAGGGTAAAATGATCGAAATACCTTCGAAGGGTAAAATGT
1 GGGTAAAATAATCAAAATACCCTTGAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGA
** * * *
32795578 CTGAAATACCCCCGAAGGGTAAAATTACAAAATAACCTTGAA
66 CCAAAATACCCCCAAAGGGTAAAATGACAAAATAACCTCGAA
32795620 GGGTAAAAT
1 GGGTAAAAT
32795629 GACCGACATA
Statistics
Matches: 101, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
105 5 0.05
106 84 0.83
107 12 0.12
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.20
Consensus pattern (107 bp):
GGGTAAAATAATCAAAATACCCTTGAAGGGTAAAATGACCGAAATACCCTCAAAGGGTAAAATGA
CCAAAATACCCCCAAAGGGTAAAATGACAAAATAACCTCGAA
Found at i:32795889 original size:26 final size:26
Alignment explanation
Indices: 32795839--32795889 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32795829 CATATACTGC
**
32795839 TACTGGCAGCTTTGCTGCGTTATTGT
1 TACTGGCAGCTTTGCTGCGACATTGT
*
32795865 TACTGGCAGCTTTGCTGTGACATTG
1 TACTGGCAGCTTTGCTGCGACATTG
32795890 GTGTGTTGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.39
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGACATTGT
Found at i:32796027 original size:27 final size:28
Alignment explanation
Indices: 32795988--32796042 Score: 94
Period size: 27 Copynumber: 2.0 Consensus size: 28
32795978 TACTGCATTG
32795988 CACTGATTACTGTATTGAGCTAAGGCCC
1 CACTGATTACTGTATTGAGCTAAGGCCC
*
32796016 CACTG-TTACTGTATTGGGCTAAGGCCC
1 CACTGATTACTGTATTGAGCTAAGGCCC
32796043 ACACACTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 21 0.81
28 5 0.19
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (28 bp):
CACTGATTACTGTATTGAGCTAAGGCCC
Found at i:32796066 original size:30 final size:30
Alignment explanation
Indices: 32795988--32796074 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
32795978 TACTGCATTG
* *
32795988 CACTGATTACTGTATTGAGCTAAGG-CC-C-
1 CACT-ATTACTGTAATGGGCTAAGGCCCACA
* *
32796016 CACTGTTACTGTATTGGGCTAAGGCCCACA
1 CACTATTACTGTAATGGGCTAAGGCCCACA
*
32796046 CACTATTATTGTAATGGGCTAAGGCCCAC
1 CACTATTACTGTAATGGGCTAAGGCCCAC
32796075 GCTGTACTGA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
27 18 0.35
28 6 0.12
29 1 0.02
30 26 0.51
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (30 bp):
CACTATTACTGTAATGGGCTAAGGCCCACA
Found at i:32796122 original size:25 final size:25
Alignment explanation
Indices: 32796094--32796141 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
32796084 ATACTGTTTA
*
32796094 GGGCTGTTGGTTTAAAATTTTAATT
1 GGGCTGTTGCTTTAAAATTTTAATT
* * *
32796119 GGGCTTTTGCTTTCATATTTTAA
1 GGGCTGTTGCTTTAAAATTTTAA
32796142 ACCGCTAGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.21, C:0.08, G:0.21, T:0.50
Consensus pattern (25 bp):
GGGCTGTTGCTTTAAAATTTTAATT
Found at i:32812958 original size:21 final size:22
Alignment explanation
Indices: 32812929--32812969 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
32812919 AATGTTATAA
*
32812929 AAAATTTAA-TAAAATAAAATT
1 AAAAGTTAATTAAAATAAAATT
*
32812950 AAAAGTTAATTAAATTAAAA
1 AAAAGTTAATTAAAATAAAA
32812970 AGATGATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAAGTTAATTAAAATAAAATT
Found at i:32813719 original size:16 final size:16
Alignment explanation
Indices: 32813666--32813725 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
32813656 ATTTTTTTAA
32813666 TTATTTTTTTCAATTT
1 TTATTTTTTTCAATTT
* ** *
32813682 TTGTATTTTTGAAAATT
1 TTAT-TTTTTTCAATTT
*
32813699 CTATTTTTTTCAATTT
1 TTATTTTTTTCAATTT
32813715 TTATTATTTTT
1 TTATT-TTTTT
32813726 AATAATTTTT
Statistics
Matches: 32, Mismatches: 10, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
16 16 0.50
17 16 0.50
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (16 bp):
TTATTTTTTTCAATTT
Found at i:32816007 original size:21 final size:22
Alignment explanation
Indices: 32815982--32816028 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
32815972 AAGCCACCAT
32815982 ATAATTGTC-GAT-AACGGCCAC
1 ATAATTG-CAGATAAACGGCCAC
*
32816003 ATAATTGCAGATAAACTGCCAC
1 ATAATTGCAGATAAACGGCCAC
32816025 ATAA
1 ATAA
32816029 CTTCCACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 10 0.43
22 12 0.52
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.23
Consensus pattern (22 bp):
ATAATTGCAGATAAACGGCCAC
Found at i:32822691 original size:18 final size:18
Alignment explanation
Indices: 32822664--32822704 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
32822654 GCAAACTGTG
* *
32822664 TTAATTTGGTGATTTGTA
1 TTAATATGGTGAATTGTA
32822682 TTAATATGGTGAATTGTA
1 TTAATATGGTGAATTGTA
32822700 TTAAT
1 TTAAT
32822705 TTGCCAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (18 bp):
TTAATATGGTGAATTGTA
Found at i:32823273 original size:22 final size:22
Alignment explanation
Indices: 32823248--32823290 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32823238 CTAATGTGTA
32823248 GTGATAGAATCCACTATAAGTG
1 GTGATAGAATCCACTATAAGTG
* *
32823270 GTGATAGAGTCCCCTATAAGT
1 GTGATAGAATCCACTATAAGT
32823291 TTCATAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (22 bp):
GTGATAGAATCCACTATAAGTG
Found at i:32823405 original size:51 final size:51
Alignment explanation
Indices: 32823350--32823457 Score: 130
Period size: 51 Copynumber: 2.1 Consensus size: 51
32823340 ATGATGGAGC
* * *
32823350 ATGAATTTTTA-TTTCGCATAAAG-TGTTATTTGGTATGAACTGATATTTCAT
1 ATGAATTATTATTTTC-CAT-AAGTTGTCATTTGGTAAGAACTGATATTTCAT
* * *
32823401 ATGAAGTATTATTTTCCATGAGTTGTCATTTGGTAAGAACTGTTATTTCAT
1 ATGAATTATTATTTTCCATAAGTTGTCATTTGGTAAGAACTGATATTTCAT
32823452 ATGAAT
1 ATGAAT
32823458 AAATGTTCGG
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
50 2 0.04
51 42 0.88
52 4 0.08
ACGTcount: A:0.30, C:0.08, G:0.17, T:0.45
Consensus pattern (51 bp):
ATGAATTATTATTTTCCATAAGTTGTCATTTGGTAAGAACTGATATTTCAT
Found at i:32830682 original size:27 final size:27
Alignment explanation
Indices: 32830664--32830794 Score: 158
Period size: 27 Copynumber: 4.9 Consensus size: 27
32830654 TTTACCTTAT
**
32830664 GAGGGTATTTCGATAATTTT-CTCTTTC
1 GAGGGTATTTCGATAATTTTAC-CCATC
* * *
32830691 GGGGGTATTT-AAGTAATTTTACCCATT
1 GAGGGTATTTCGA-TAATTTTACCCATC
32830718 GAGGGTATTTCGATAATTTTACCCATC
1 GAGGGTATTTCGATAATTTTACCCATC
* *
32830745 AAGGGTATTTCGGTAATTTTACCCATC
1 GAGGGTATTTCGATAATTTTACCCATC
*
32830772 GAGGGTATTTCGGTAATTTTACC
1 GAGGGTATTTCGATAATTTTACC
32830795 TTACAGGGGT
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 87 0.97
28 2 0.02
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (27 bp):
GAGGGTATTTCGATAATTTTACCCATC
Found at i:32830721 original size:54 final size:54
Alignment explanation
Indices: 32830663--32830794 Score: 176
Period size: 54 Copynumber: 2.4 Consensus size: 54
32830653 TTTTACCTTA
** **
32830663 TGAGGGTATTTCGATAATTTT-CTCTTTCGGGGGTATTTAAGTAATTTTACCCAT
1 TGAGGGTATTTCGATAATTTTAC-CCATCAAGGGTATTTAAGTAATTTTACCCAT
**
32830717 TGAGGGTATTTCGATAATTTTACCCATCAAGGGTATTTCGGTAATTTTACCCAT
1 TGAGGGTATTTCGATAATTTTACCCATCAAGGGTATTTAAGTAATTTTACCCAT
* *
32830771 CGAGGGTATTTCGGTAATTTTACC
1 TGAGGGTATTTCGATAATTTTACC
32830795 TTACAGGGGT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 68 0.99
55 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.41
Consensus pattern (54 bp):
TGAGGGTATTTCGATAATTTTACCCATCAAGGGTATTTAAGTAATTTTACCCAT
Found at i:32830804 original size:27 final size:27
Alignment explanation
Indices: 32830652--32830804 Score: 95
Period size: 27 Copynumber: 5.7 Consensus size: 27
32830642 TATAATAGTC
* *
32830652 ATTTTACCTTA-TGAGGGTATTTCGATA
1 ATTTTACCTTACAG-GGGTATTTCGGTA
* * **
32830679 ATTTT-CTCTTTCGGGGGTATTTAAGTA
1 ATTTTAC-CTTACAGGGGTATTTCGGTA
* *
32830706 ATTTTACCCATT-GA-GGGTATTTCGATA
1 ATTTTA-CC-TTACAGGGGTATTTCGGTA
* *
32830733 ATTTTACC-CATCAAGGGTATTTCGGTA
1 ATTTTACCTTA-CAGGGGTATTTCGGTA
*
32830760 ATTTTACC-CATC-GAGGGTATTTCGGTA
1 ATTTTACCTTA-CAG-GGGTATTTCGGTA
32830787 ATTTTACCTTACAGGGGT
1 ATTTTACCTTACAGGGGT
32830805 CTTGGTGTAG
Statistics
Matches: 100, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
26 4 0.04
27 89 0.89
28 4 0.04
29 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (27 bp):
ATTTTACCTTACAGGGGTATTTCGGTA
Found at i:32834819 original size:20 final size:20
Alignment explanation
Indices: 32834794--32834858 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
32834784 TTGGAATTTT
* * *
32834794 CACTTCAGTGCCCTTGTTTG
1 CACTTCAGTGCCCATGTATA
32834814 CACTTC-GATGCCCATGTATA
1 CACTTCAG-TGCCCATGTATA
* *
32834834 CACTTCAATGCCCCTGTATA
1 CACTTCAGTGCCCATGTATA
32834854 CACTT
1 CACTT
32834859 TGGTGTCCCT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
19 1 0.03
20 37 0.97
ACGTcount: A:0.20, C:0.32, G:0.14, T:0.34
Consensus pattern (20 bp):
CACTTCAGTGCCCATGTATA
Found at i:32840635 original size:29 final size:29
Alignment explanation
Indices: 32840603--32840696 Score: 71
Period size: 29 Copynumber: 3.1 Consensus size: 29
32840593 AATTGTGTTT
32840603 CTTTTCAAATTTTTGCCACAAAGGTTATC
1 CTTTTCAAATTTTTGCCACAAAGGTTATC
* ** ** *
32840632 CTTTACATCCAATACTCACCACAAAGGTTTTC
1 CTTT---TCAAATTTTTGCCACAAAGGTTATC
* * * *
32840664 CTGTCCAAAGTTTTGCCACAAAGGTTGTC
1 CTTTTCAAATTTTTGCCACAAAGGTTATC
32840693 CTTT
1 CTTT
32840697 ACATCCAGTA
Statistics
Matches: 46, Mismatches: 16, Indels: 6
0.68 0.24 0.09
Matches are distributed among these distances:
29 24 0.52
32 22 0.48
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.36
Consensus pattern (29 bp):
CTTTTCAAATTTTTGCCACAAAGGTTATC
Found at i:32840687 original size:61 final size:61
Alignment explanation
Indices: 32840608--32840758 Score: 221
Period size: 61 Copynumber: 2.5 Consensus size: 61
32840598 TGTTTCTTTT
* * *
32840608 CAAATTTTTGCCACAAAGGTTATCCTTTACATCCAATACTCACCACAAAGGTTTTCCTGTC
1 CAAAGTTTTGCCACAAAGGTTATCCTTTACATCCAATACTCACCACAAAGGCTTTCCTATC
* * *
32840669 CAAAGTTTTGCCACAAAGGTTGTCCTTTACATCCAGTACTCGCCACAAAGGCTTTCCTATC
1 CAAAGTTTTGCCACAAAGGTTATCCTTTACATCCAATACTCACCACAAAGGCTTTCCTATC
* * *
32840730 TAAAGTTTTGCCACAAATGTTTTCCTTTA
1 CAAAGTTTTGCCACAAAGGTTATCCTTTA
32840759 ATTGATGTTT
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 81 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (61 bp):
CAAAGTTTTGCCACAAAGGTTATCCTTTACATCCAATACTCACCACAAAGGCTTTCCTATC
Found at i:32840719 original size:32 final size:32
Alignment explanation
Indices: 32840617--32840719 Score: 104
Period size: 32 Copynumber: 3.3 Consensus size: 32
32840607 TCAAATTTTT
*
32840617 GCCACAAAGGTTATCCTTTACATCCAATACTC
1 GCCACAAAGGTTATCCTTTACATCCAGTACTC
* * * * * * *
32840649 ACCACAAAGGTTTTCCTGTCCA--AAGT-TTT
1 GCCACAAAGGTTATCCTTTACATCCAGTACTC
*
32840678 GCCACAAAGGTTGTCCTTTACATCCAGTACTC
1 GCCACAAAGGTTATCCTTTACATCCAGTACTC
32840710 GCCACAAAGG
1 GCCACAAAGG
32840720 CTTTCCTATC
Statistics
Matches: 53, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
29 19 0.36
30 2 0.04
31 3 0.06
32 29 0.55
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (32 bp):
GCCACAAAGGTTATCCTTTACATCCAGTACTC
Found at i:32840753 original size:29 final size:29
Alignment explanation
Indices: 32840650--32840755 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
32840640 CCAATACTCA
* *
32840650 CCACAAAGGTTTTCCTGTCCAAAGTTTTG
1 CCACAAAGGTTTTCCTATCTAAAGTTTTG
* * ** * *
32840679 CCACAAAGGTTGTCCTTTACATCCAGTACTCG
1 CCACAAAGGTTTTCCTAT-C-TAAAGT-TTTG
*
32840711 CCACAAAGGCTTTCCTATCTAAAGTTTTG
1 CCACAAAGGTTTTCCTATCTAAAGTTTTG
*
32840740 CCACAAATGTTTTCCT
1 CCACAAAGGTTTTCCT
32840756 TTAATTGATG
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
29 32 0.55
30 5 0.09
31 4 0.07
32 17 0.29
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.33
Consensus pattern (29 bp):
CCACAAAGGTTTTCCTATCTAAAGTTTTG
Found at i:32852114 original size:15 final size:14
Alignment explanation
Indices: 32852089--32852133 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
32852079 TTTTGTTTAT
* *
32852089 TTATTTGAAATCTA
1 TTATTTTAAATATA
*
32852103 TTATTTATAAATATT
1 TTATTT-TAAATATA
32852118 TTATTTTAAATATA
1 TTATTTTAAATATA
32852132 TT
1 TT
32852134 TTAAATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (14 bp):
TTATTTTAAATATA
Found at i:32854183 original size:16 final size:18
Alignment explanation
Indices: 32854158--32854207 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 18
32854148 GAATATCTAG
32854158 TTTTTAATATT-TTAT-A
1 TTTTTAATATTATTATGA
*
32854174 TTTTTTATATTATTATGA
1 TTTTTAATATTATTATGA
*
32854192 TTTTAAATAATTATTA
1 TTTTTAAT-ATTATTA
32854208 AAATTATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 10 0.36
17 4 0.14
18 7 0.25
19 7 0.25
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTTAATATTATTATGA
Found at i:32854255 original size:27 final size:28
Alignment explanation
Indices: 32854186--32854268 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 28
32854176 TTTTATATTA
*
32854186 TTATGATTTTAAATAATTA-TTAAAATT
1 TTATAATTTTAAATAATTATTTAAAATT
** *
32854213 ATT-TAATTTTTTATAATTATTTACAATT
1 -TTATAATTTTAAATAATTATTTAAAATT
* * *
32854241 TTAT-ATTTTCAATAAGT-TTTATAATT
1 TTATAATTTTAAATAATTATTTAAAATT
32854267 TT
1 TT
32854269 TTGAACCATG
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
26 10 0.22
27 25 0.56
28 10 0.22
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (28 bp):
TTATAATTTTAAATAATTATTTAAAATT
Found at i:32854269 original size:9 final size:9
Alignment explanation
Indices: 32854158--32854269 Score: 54
Period size: 9 Copynumber: 12.4 Consensus size: 9
32854148 GAATATCTAG
32854158 TTTT-TAAT
1 TTTTATAAT
*
32854166 ATTTTATATT
1 -TTTTATAAT
32854176 TTTTAT-AT
1 TTTTATAAT
* *
32854184 TATTATGAT
1 TTTTATAAT
*
32854193 TTTAAATAAT
1 TTT-TATAAT
* *
32854203 TATTAAAAT
1 TTTTATAAT
*
32854212 TATTTA-ATT
1 T-TTTATAAT
32854221 TTTTATAAT
1 TTTTATAAT
*
32854230 TATTTACAA-
1 T-TTTATAAT
32854239 TTTTAT-AT
1 TTTTATAAT
* *
32854247 TTTCAATAAG
1 TTT-TATAAT
32854257 TTTTATAAT
1 TTTTATAAT
32854266 TTTT
1 TTTT
32854270 TGAACCATGT
Statistics
Matches: 76, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
7 1 0.01
8 17 0.22
9 36 0.47
10 22 0.29
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:32857575 original size:40 final size:40
Alignment explanation
Indices: 32857499--32857608 Score: 132
Period size: 40 Copynumber: 2.8 Consensus size: 40
32857489 GTTTGGATAC
* * *
32857499 AAAACGCCGCTAAAAATCAAGCATTATCGGCGCTTTTAAA
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCACTTTTAAA
* * ***
32857539 AAAACGCCGCTAAAGATCGAGTATTAGCGGCACTTTTTGG
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGCACTTTTAAA
*
32857579 AAAACGCTGCTAAAAAT-GAGCATTAGCGGC
1 AAAACGCCGCTAAAAATCGAGCATTAGCGGC
32857609 GTTTTCCAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 12 0.20
40 47 0.80
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCGAGCATTAGCGGCACTTTTAAA
Found at i:32857716 original size:41 final size:41
Alignment explanation
Indices: 32857656--32857982 Score: 396
Period size: 41 Copynumber: 8.0 Consensus size: 41
32857646 TTTTGAGTTT
* * ** *
32857656 TCGGGGCTTTAGTGACGTTTTTCAAAAAGCGTCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * *
32857697 AT-GGGGCTTTAGCAGCGTTTTTGGAAAAGCACCGCTAATGT
1 -TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
** * *
32857738 TCAAGGCTATAGCGGCGTTTTT-GAAGAAGCGCCACTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGC
*
32857779 TCGGGGCTTTAACGGCGTTTTTGGAAAAGCG-C-CTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* *
32857818 TCGGGGCTTTAACGGCGTTTTTGGAAAAGCACCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* *
32857859 TCGGGGCTTTAGTGGCGTTTTTGGAAAGGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
*
32857900 TCGGGGCTTTAGCGTCGTTTTT-GAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * *
32857940 TCGGGTCTTTAGCAGCGTTTTT-GAATAAGCGTCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGC
32857981 TC
1 TC
32857983 TATTTTTAGC
Statistics
Matches: 248, Mismatches: 31, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
39 37 0.15
40 45 0.18
41 162 0.65
42 4 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (41 bp):
TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
Found at i:32857876 original size:121 final size:122
Alignment explanation
Indices: 32857656--32857982 Score: 412
Period size: 121 Copynumber: 2.7 Consensus size: 122
32857646 TTTTGAGTTT
* * *
32857656 TCGGGGCTTTAGTGACGTTTTTCAAAAAGCGTCGCTAATGCAT-GGGGCTTTAGCAGCGTTTTTG
1 TCGGGGCTTTAGCGACGTTTTT-GAAAAGCGCCGCTAATGC-TCGGGGCTTTAGCAGCGTTTTTG
*
32857720 GAAAAGCACCGCTAATGTTCAAGGCTATAGCGGCGTTTTT-GAAGAAGCGCCACTAATGC
64 GAAAAGCACCGCTAATGCTCAAGGCTATAGCGGCGTTTTTGGAA-AAGCGCCACTAATGC
* * * *
32857779 TCGGGGCTTTAACGGCGTTTTTGGAAAAGCG-C-CTAATGCTCGGGGCTTTAACGGCGTTTTTGG
1 TCGGGGCTTTAGCGACGTTTTT-GAAAAGCGCCGCTAATGCTCGGGGCTTTAGCAGCGTTTTTGG
** * * * *
32857842 AAAAGCACCGCTAATGCTCGGGGCTTTAGTGGCGTTTTTGGAAAGGCGCCGCTAATGC
65 AAAAGCACCGCTAATGCTCAAGGCTATAGCGGCGTTTTTGGAAAAGCGCCACTAATGC
* *
32857900 TCGGGGCTTTAGCGTCGTTTTTGAAAAGCGCCGCTAATGCTCGGGTCTTTAGCAGCGTTTTT-GA
1 TCGGGGCTTTAGCGACGTTTTTGAAAAGCGCCGCTAATGCTCGGGGCTTTAGCAGCGTTTTTGGA
**
32857964 ATAAGCGTCGCTAATGCTC
66 A-AAGCACCGCTAATGCTC
32857983 TATTTTTAGC
Statistics
Matches: 178, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
120 9 0.05
121 98 0.55
122 45 0.25
123 26 0.15
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (122 bp):
TCGGGGCTTTAGCGACGTTTTTGAAAAGCGCCGCTAATGCTCGGGGCTTTAGCAGCGTTTTTGGA
AAAGCACCGCTAATGCTCAAGGCTATAGCGGCGTTTTTGGAAAAGCGCCACTAATGC
Found at i:32858010 original size:162 final size:162
Alignment explanation
Indices: 32857673--32858014 Score: 413
Period size: 162 Copynumber: 2.1 Consensus size: 162
32857663 TTTAGTGACG
* ** *
32857673 TTTTTCAAAAAGCGTCGCTAATGCATGGGGCTTTAGCAGCGTTTTTGGAAAAGCACCGCTAATGT
1 TTTTTGAAAAAGCACCGCTAATGCATGGGGCTTTAGCAGCGTTTTTGGAAAAGCACCGCTAATGC
*
32857738 TCAAGGCTATAGCGGCGTTTTTGAAGAAGCGCCACTAATGCTCGGGGCTTTAACGGCGTTTTTGG
66 TCAAGGCTATAGCGGCGTTTTTGAAGAAGCGCCACTAATGCTCGGGGCTTTAACAGCGTTTTTGG
* *
32857803 AAAAGCGCCTAATGCTCGGGGCTTTAACGGCG
131 AAAAGCGCCTAATGCTCGGAGCTTTAACGGCA
* ** * *
32857835 TTTTTGGAAAAGCACCGCTAATGC-TCGGGGCTTTAGTGGCGTTTTTGGAAAGGCGCCGCTAATG
1 TTTTTGAAAAAGCACCGCTAATGCAT-GGGGCTTTAGCAGCGTTTTTGGAAAAGCACCGCTAATG
** * * * * *
32857899 CTCGGGGCTTTAGCGTCGTTTTTGAA-AAGCGCCGCTAATGCTCGGGTCTTTAGCAGCGTTTTT-
65 CTCAAGGCTATAGCGGCGTTTTTGAAGAAGCGCCACTAATGCTCGGGGCTTTAACAGCGTTTTTG
* ** *
32857962 GAATAAGCGTCGCTAATGCTC-TATTTTTAGCGGCA
130 GAA-AAGCG-C-CTAATGCTCGGAGCTTTAACGGCA
32857997 TTTTTGAAAAAGCACCGC
1 TTTTTGAAAAAGCACCGC
32858015 AAAAAATATT
Statistics
Matches: 152, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
160 3 0.02
161 39 0.26
162 101 0.66
163 9 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (162 bp):
TTTTTGAAAAAGCACCGCTAATGCATGGGGCTTTAGCAGCGTTTTTGGAAAAGCACCGCTAATGC
TCAAGGCTATAGCGGCGTTTTTGAAGAAGCGCCACTAATGCTCGGGGCTTTAACAGCGTTTTTGG
AAAAGCGCCTAATGCTCGGAGCTTTAACGGCA
Found at i:32858460 original size:21 final size:21
Alignment explanation
Indices: 32858389--32858461 Score: 53
Period size: 21 Copynumber: 3.4 Consensus size: 21
32858379 GTTAATAGTG
32858389 TAAGGTTTAAGGAGTAT-GGATT
1 TAAGGTTTAAGG-GT-TGGGATT
* * **
32858411 TAGGGTTTATGCATTAGGGA-T
1 TAAGGTTTAAGGGTT-GGGATT
32858432 TATA-GTTTAAGGGTTGGGATT
1 TA-AGGTTTAAGGGTTGGGATT
32858453 TAAGGTTTA
1 TAAGGTTTA
32858462 GGGGGTATGG
Statistics
Matches: 38, Mismatches: 8, Indels: 11
0.67 0.14 0.19
Matches are distributed among these distances:
20 6 0.16
21 20 0.53
22 12 0.32
ACGTcount: A:0.27, C:0.01, G:0.32, T:0.40
Consensus pattern (21 bp):
TAAGGTTTAAGGGTTGGGATT
Found at i:32858476 original size:21 final size:20
Alignment explanation
Indices: 32858452--32858506 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
32858442 GGGTTGGGAT
*
32858452 TTAAGGTTTAGGGGGTATGGG
1 TTAAGG-TTAGGGGGTAGGGG
*
32858473 TTAAGGGTTAGGGGTTAGGGG
1 TTAA-GGTTAGGGGGTAGGGG
32858494 TTAAGAGTTAGGG
1 TTAAG-GTTAGGG
32858507 ATTTAGGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 27 0.90
22 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.47, T:0.31
Consensus pattern (20 bp):
TTAAGGTTAGGGGGTAGGGG
Found at i:32858489 original size:14 final size:14
Alignment explanation
Indices: 32858459--32858516 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
32858449 GATTTAAGGT
* *
32858459 TTAGGGGGTATGGG
1 TTAGGGGTTAAGGG
* *
32858473 TTAAGGGTTAGGGG
1 TTAGGGGTTAAGGG
*
32858487 TTAGGGGTTAAGAG
1 TTAGGGGTTAAGGG
* *
32858501 TTAGGGATTTAGGG
1 TTAGGGGTTAAGGG
32858515 TT
1 TT
32858517 TAGGAATTCA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.21, C:0.00, G:0.47, T:0.33
Consensus pattern (14 bp):
TTAGGGGTTAAGGG
Found at i:32858516 original size:21 final size:21
Alignment explanation
Indices: 32858459--32858506 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
32858449 GATTTAAGGT
* * *
32858459 TTAGGGGGTATGGGTTAAGGG
1 TTAGGGGTTAGGGGTTAAGAG
32858480 TTAGGGGTTAGGGGTTAAGAG
1 TTAGGGGTTAGGGGTTAAGAG
32858501 TTAGGG
1 TTAGGG
32858507 ATTTAGGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.50, T:0.29
Consensus pattern (21 bp):
TTAGGGGTTAGGGGTTAAGAG
Found at i:32858923 original size:18 final size:19
Alignment explanation
Indices: 32858900--32858945 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 19
32858890 AGATTATAAG
*
32858900 AAATAAAAAT-AAATACAA
1 AAATAAAAATGAAATAAAA
32858918 AAATAAAAATGAAATAAAA
1 AAATAAAAATGAAATAAAA
32858937 AAACTAAAA
1 AAA-TAAAA
32858946 TTTATAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 10 0.40
19 10 0.40
20 5 0.20
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.15
Consensus pattern (19 bp):
AAATAAAAATGAAATAAAA
Found at i:32861709 original size:168 final size:167
Alignment explanation
Indices: 32861410--32861714 Score: 378
Period size: 168 Copynumber: 1.8 Consensus size: 167
32861400 ATAATATGAT
* * **
32861410 CTTAATGGTGTAATTGTGAATTTCATTGAAAACTTTAATTTGTTAGAATTTGATCCTCTTAATTT
1 CTTAATGGTGTAAGTCTGAATTTCATTGAAAACTTTAATTTGTTAGAATTCCATCCTCTTAATTT
* * * ** * ** *
32861475 GCAAAAATTGGAAATTTGATCCTATTTTTGGTGCGTACATGCACTTGAACAATTGGTTTTTGCTA
66 ACAAAAATTGAAAATTTGAT-CGATTTTTGGTGAATACATGAACTTGAACAATTAATTTGTGCTA
32861540 ATTTGTTTTGATCTCAGATAGTTTAAAACTCTTATTTA
130 ATTTGTTTTGATCTCAGATAGTTTAAAACTCTTATTTA
* * *
32861578 CTTAATGGTGTAAGTCTGAATTTCATTGGAAACTTTAATTTGTTAGACTTCCATCCTCTTATTTT
1 CTTAATGGTGTAAGTCTGAATTTCATTGAAAACTTTAATTTGTTAGAATTCCATCCTCTTAATTT
* * * ***
32861643 ATAAAAATTGAAAATTTAGTAT-GGTTTTTGGTGAATATATGAACTTGAATTGTTAATTTGTGCT
66 ACAAAAATTGAAAATTT-G-ATCGATTTTTGGTGAATACATGAACTTGAACAATTAATTTGTGCT
32861707 AATTTGTT
129 AATTTGTT
32861715 GTATTTAAAA
Statistics
Matches: 113, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
168 110 0.97
169 1 0.01
170 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (167 bp):
CTTAATGGTGTAAGTCTGAATTTCATTGAAAACTTTAATTTGTTAGAATTCCATCCTCTTAATTT
ACAAAAATTGAAAATTTGATCGATTTTTGGTGAATACATGAACTTGAACAATTAATTTGTGCTAA
TTTGTTTTGATCTCAGATAGTTTAAAACTCTTATTTA
Found at i:32862026 original size:86 final size:86
Alignment explanation
Indices: 32861913--32862162 Score: 279
Period size: 86 Copynumber: 2.9 Consensus size: 86
32861903 TAAAAATTGA
* * * *
32861913 AAATTGAAAATTTAGTCTGCTTGTTGGTAAATGCATGAACTTGAACCATTTATTTTTGCTAATTT
1 AAATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATTT
* *
32861978 GTTGCATATAAGTTGTTATA-
66 GTTGCATATAAATCGTTATAG
* * *
32861998 AATATTGAAAAATTAGTCTGATTTTTGGTAAATACATGAACTTGAACCGTTGATTTTTGTTAATT
1 AA-ATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATT
32862063 TGTTGCATATAAATCGTTATAG
65 TGTTGCATATAAATCGTTATAG
* * * ** * ** *
32862085 AAATTGAAGATTTAGCCCT-ATTGCCGGTAAATATATGAACTATGAATAATTGATTTTTGTTAAT
1 AAATTGAAAAATTAG-TCTGATTGTTGGTAAATACATGAACT-TGAACCATTGATTTTTGCTAAT
* *
32862149 TTGTTTCACATAAA
64 TTGTTGCATATAAA
32862163 CTGTTGTAAG
Statistics
Matches: 140, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
85 2 0.01
86 103 0.74
87 35 0.25
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (86 bp):
AAATTGAAAAATTAGTCTGATTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAATTT
GTTGCATATAAATCGTTATAG
Found at i:32862218 original size:40 final size:40
Alignment explanation
Indices: 32862174--32862258 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
32862164 TGTTGTAAGA
* * *
32862174 TTGATTTGTGTTAATTTCTTGCATA-TAAATTATTGAACTG
1 TTGATTTGTGATAATTCCTTACATATTAAA-TATTGAACTG
* *
32862214 TTGATTTTTGATAATTCCTTACATATTAAATATTGAAGTG
1 TTGATTTGTGATAATTCCTTACATATTAAATATTGAACTG
32862254 TTGAT
1 TTGAT
32862259 ATTCAAGCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 35 0.90
41 4 0.10
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.49
Consensus pattern (40 bp):
TTGATTTGTGATAATTCCTTACATATTAAATATTGAACTG
Found at i:32863708 original size:42 final size:43
Alignment explanation
Indices: 32863660--32863867 Score: 283
Period size: 43 Copynumber: 4.8 Consensus size: 43
32863650 TTTTTGCGAG
32863660 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGT-GAAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAA
*
32863702 AAGCGCCGCTAAAGGTATTGATCTATAGCGGCGTTTGTGGAAAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGG-AAA
* * * * *
32863746 AAGTGTCGCTAAAGGTCTTAAGCTATAGCGGCATTTGTGGAAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAA
* * * *
32863789 AAGCGCCACTAAAGGTCTTGATCTATAGTGGCATTTGTGGAGA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAA
* * *
32863832 AAGCGCCGCTAAAAGTCATGGTCTATAGCGGCGTTT
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTT
32863868 TTATAAATAA
Statistics
Matches: 144, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 37 0.26
43 70 0.49
44 37 0.26
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAA
Found at i:32863815 original size:87 final size:86
Alignment explanation
Indices: 32863666--32863829 Score: 256
Period size: 87 Copynumber: 1.9 Consensus size: 86
32863656 CGAGAAGCGC
* * * *
32863666 CGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTATTGATCTATAGC
1 CGCTAAAGGTCTTAAGCTATAGCGGCATTTGTGAAAAAGCGCCACTAAAGGTATTGATCTATAGC
*
32863731 GGCGTTTGTGGAAAAAAGTGT
66 GGCATTTGTGGAAAAAAGTGT
*
32863752 CGCTAAAGGTCTTAAGCTATAGCGGCATTTGTGGAAAAAGCGCCACTAAAGGTCTTGATCTATAG
1 CGCTAAAGGTCTTAAGCTATAGCGGCATTTGT-GAAAAAGCGCCACTAAAGGTATTGATCTATAG
*
32863817 TGGCATTTGTGGA
65 CGGCATTTGTGGA
32863830 GAAAGCGCCG
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
86 29 0.41
87 41 0.59
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (86 bp):
CGCTAAAGGTCTTAAGCTATAGCGGCATTTGTGAAAAAGCGCCACTAAAGGTATTGATCTATAGC
GGCATTTGTGGAAAAAAGTGT
Found at i:32865700 original size:18 final size:18
Alignment explanation
Indices: 32865670--32865715 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
32865660 AATTTTAAAT
32865670 AATTATTTA-AATTATTTA
1 AATT-TTTATAATTATTTA
32865688 AATTTTTATAATTATTTA
1 AATTTTTATAATTATTTA
*
32865706 AAATTTTATA
1 AATTTTTATA
32865716 TTTTCAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AATTTTTATAATTATTTA
Found at i:32865725 original size:27 final size:26
Alignment explanation
Indices: 32865656--32865738 Score: 78
Period size: 26 Copynumber: 3.1 Consensus size: 26
32865646 TTCTATATTA
*
32865656 TTATAATTTTAAATAATTATTTAAATTAT
1 TTAT-ATTTT-AATAATTATTTAAAAT-T
* *
32865685 TTAAATTTTTATAATTATTTAAAATT
1 TTATATTTTAATAATTATTTAAAATT
* *
32865711 TTATATTTTCAATAAGT-TTTATAATT
1 TTATATTTT-AATAATTATTTAAAATT
32865737 TT
1 TT
32865739 TTGAACCACA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
26 19 0.41
27 19 0.41
28 5 0.11
29 3 0.07
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (26 bp):
TTATATTTTAATAATTATTTAAAATT
Found at i:32865739 original size:9 final size:9
Alignment explanation
Indices: 32865642--32865739 Score: 60
Period size: 9 Copynumber: 10.7 Consensus size: 9
32865632 AATATTTAAT
*
32865642 ATTTTTCTA
1 ATTTTTATA
*
32865651 TATTATTATA
1 -ATTTTTATA
*
32865661 ATTTTAAATA
1 ATTTT-TATA
32865671 ATTATTTA-A
1 ATT-TTTATA
32865680 ATTATTTA-A
1 ATT-TTTATA
32865689 ATTTTTATA
1 ATTTTTATA
32865698 ATTATTTA-A
1 ATT-TTTATA
*
32865707 AATTTTAT-
1 ATTTTTATA
*
32865715 ATTTTCAATA
1 ATTTT-TATA
*
32865725 AGTTTTATA
1 ATTTTTATA
32865734 ATTTTT
1 ATTTTT
32865740 TGAACCACAT
Statistics
Matches: 70, Mismatches: 11, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
8 12 0.17
9 34 0.49
10 22 0.31
11 2 0.03
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (9 bp):
ATTTTTATA
Found at i:32866563 original size:27 final size:28
Alignment explanation
Indices: 32866523--32866578 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
32866513 ATTTAAAATT
*
32866523 AATTTTAGTTTTTATAAT-GTAAAAATAA
1 AATTTTAGTATTTA-AATAGTAAAAATAA
*
32866551 AATTTTA-TATTTAAATAGTGAAAATAA
1 AATTTTAGTATTTAAATAGTAAAAATAA
32866578 A
1 A
32866579 TTAAAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 3 0.12
27 15 0.60
28 7 0.28
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (28 bp):
AATTTTAGTATTTAAATAGTAAAAATAA
Found at i:32866835 original size:38 final size:38
Alignment explanation
Indices: 32866778--32866851 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
32866768 GAATTAAAGA
* * *
32866778 AAAATGACTAAATCGTAAAAGTCGTAAAACTTAATCAT
1 AAAAGGACTAAATCATAAAAGTCATAAAACTTAATCAT
*
32866816 AAAAGGACTAAATCATAAAAGTTATAAAACTTAATC
1 AAAAGGACTAAATCATAAAAGTCATAAAACTTAATC
32866852 GTTATTGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.53, C:0.12, G:0.09, T:0.26
Consensus pattern (38 bp):
AAAAGGACTAAATCATAAAAGTCATAAAACTTAATCAT
Found at i:32873698 original size:18 final size:18
Alignment explanation
Indices: 32873666--32873713 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
32873656 TTTGCTATTA
* * *
32873666 GTTTTGGGCTAGGATTTG
1 GTTTTGGGTTTGGATTGG
32873684 GTTTTGGGTTTGGATTGG
1 GTTTTGGGTTTGGATTGG
*
32873702 GCTATTGGGTTT
1 G-TTTTGGGTTT
32873714 ATAATGGGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.08, C:0.04, G:0.40, T:0.48
Consensus pattern (18 bp):
GTTTTGGGTTTGGATTGG
Found at i:32874287 original size:182 final size:181
Alignment explanation
Indices: 32874034--32874393 Score: 499
Period size: 182 Copynumber: 2.0 Consensus size: 181
32874024 GGGGAACATA
*
32874034 TTTGCTATGATCTGCTCTACTACAACTCAAAGAGATAAGATCTGCAACTTATAGTTTCAACCTGT
1 TTTGCTATGATCTACTCTACTACAACTCAAAGAGATAAGATCTGCAACTTATAGTTTCAACCTGT
* * * *
32874099 CCCACTGCAAATTCAGGAAAATGAGATTTACTATCTTCGGTTTGCTCCACTTCAACTTCAGGAAG
66 CCCACTGCAAATTCAGGAAAATGAGAATTACTATCTTCAGTCTGCTCCACTGCAACTTCAGGAAG
* *
32874164 ATAAGACTTGTTATCTTTAGAGTGCCCC-TATGTAACTTCAGGGAGATAAGG
131 ATAAGACTTGTTATCTTCAGACTGCCCCAT-TGTAACTTCAGGGAGATAAGG
* * * * * *
32874215 TTTGCTATGATCTATTCTACTACAACTTCAGAGAGATAAGATCTGGAATTTATA-TATTTAATCT
1 TTTGCTATGATCTACTCTACTACAAC-TCAAAGAGATAAGATCTGCAACTTATAGT-TTCAACCT
* * * *
32874279 GTCCCACTGCAAATTCAGGGAAATGAGAATTATTATCTTCAGTCTGCTCCACTGCAACTTTAGGG
64 GTCCCACTGCAAATTCAGGAAAATGAGAATTACTATCTTCAGTCTGCTCCACTGCAACTTCAGGA
* * *
32874344 AGATAAGATTTGTTATCTTCAGTCTGCCCCATTTTAACTTCAGGGAGATA
129 AGATAAGACTTGTTATCTTCAGACTGCCCCATTGTAACTTCAGGGAGATA
32874394 GGACTTGTGA
Statistics
Matches: 156, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
181 25 0.16
182 130 0.83
183 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (181 bp):
TTTGCTATGATCTACTCTACTACAACTCAAAGAGATAAGATCTGCAACTTATAGTTTCAACCTGT
CCCACTGCAAATTCAGGAAAATGAGAATTACTATCTTCAGTCTGCTCCACTGCAACTTCAGGAAG
ATAAGACTTGTTATCTTCAGACTGCCCCATTGTAACTTCAGGGAGATAAGG
Found at i:32874551 original size:181 final size:181
Alignment explanation
Indices: 32874315--32875119 Score: 1160
Period size: 181 Copynumber: 4.4 Consensus size: 181
32874305 GAATTATTAT
* * * * * * * * * *
32874315 CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTTATCTTCAGTCTGCCCCATTTTA
1 CTTCAATCTGTTCCACTACAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCCACTGTA
* *
32874380 ACTTCAGGGAGATAGGACTTGTGACTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTTG
66 ACTTCAGGGAGATAAGACTTGTGATTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTTG
* * *
32874445 CTATGATTTGCTCTACTGCAACTTCAGAGATATAAGATTTGTAATTTATAG
131 CTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAG
* * * *
32874496 CTTCAATTTGTTCTATTACAACTTCAGAGAAATGAGATTTGCTATCTTCAGTCTGCTCCACTGTA
1 CTTCAATCTGTTCCACTACAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCCACTGTA
* * *
32874561 ACTTCAGAGAGATAAGACTTGTGATTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGGTTTG
66 ACTTCAGGGAGATAAGACTTGTGATTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTTG
*
32874626 CCATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAG
131 CTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAG
* *
32874677 CTTTAATCTGTTCCACTACAACTTCAGGGAAATGAGATTTGTTATCTTCAGTCTGCTCCACTGTA
1 CTTCAATCTGTTCCACTACAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCCACTGTA
* * * * * * *
32874742 ACTTCAGGGAAATGAGATTTGTTATTTCAACCTGCTCCACTGCAACTTTAGGGAGATAATGTTTG
66 ACTTCAGGGAGATAAGACTTGTGATTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTTG
* * * *
32874807 CTATGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTATAATTTATAA
131 CTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAG
* * * * *
32874858 CTTCCATCTATTCCATTACAACTTCAGGGAAATGAGATTTGATATCTTCAGTCTGCTCCACTGCA
1 CTTCAATCTGTTCCACTACAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCCACTGTA
* ** *
32874923 ACTTCAGGGAGATAAGACTTGTGATTTCAACATATTCCACTACAACTTCAGGGAGATAATGTTTG
66 ACTTCAGGGAGATAAGACTTGTGATTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTTG
32874988 CTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAG
131 CTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAG
** * * *
32875039 CTTCAATCTGTTCCACTGTAACTTTAGGGAAATGAGATTTGCTATCTTCAGTCTACTCCACTGCA
1 CTTCAATCTGTTCCACTACAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCCACTGTA
32875104 ACTTCAGGGAGATAAG
66 ACTTCAGGGAGATAAG
32875120 GTCTTTAATT
Statistics
Matches: 557, Mismatches: 67, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
181 557 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (181 bp):
CTTCAATCTGTTCCACTACAACTTCAGGGAAATGAGATTTGCTATCTTCAGTCTGCTCCACTGTA
ACTTCAGGGAGATAAGACTTGTGATTTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGTTTG
CTATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAG
Found at i:32874566 original size:45 final size:45
Alignment explanation
Indices: 32874274--32875119 Score: 327
Period size: 45 Copynumber: 18.7 Consensus size: 45
32874264 TTATATATTT
* * * * *
32874274 AATCTG-TCCCACTGCAAATTCAGGGAAATGAGAATTATTATCTTC
1 AATCTGCT-CCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * *
32874319 AGTCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * ** * * * * *
32874364 AGTCTGCCCCATTTTAACTTCAGGGAGATAGGACTTGTGA-CTTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * * * *
32874408 AACCTGCTCCACTACAACTTCAGGGAGATAAGGTTTGCTA---T-
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * *
32874449 GATTTGCTCTACTGCAACTTCAGAGATATAAGATTTGTAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTG----TTAT--CTTC
* * * * * * *
32874500 AATTTGTTCTATTACAACTTCAGAGAAATGAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * * *
32874545 AGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGTGAT-TTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * * * * *
32874589 AACCTGCTCCACTGCAACTTTAGGGAGATAAGGTTTG---CCAT-
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * * *
32874630 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGAT-T-T--GTTAT--CTTC
* * * *
32874681 AATCTGTTCCACTACAACTTCAGGGAAATGAGATTTGTTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * *
32874726 AGTCTGCTCCACTGTAACTTCAGGGAAATGAGATTTGTTAT-TTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * * *
32874770 AACCTGCTCCACTGCAACTTTAGGGAGATAATG-TTTGCTA---T-
1 AATCTGCTCCACTGCAACTTCAGAGAAATAA-GATTTGTTATCTTC
* * * * * *
32874811 GATCTACTCTACTGCAACTTCAGAGAGACAAGATCTATAATTTATAACTTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGAT-T-T--GTTAT--CTTC
* ** * * * * *
32874862 CATCTATTCCATTACAACTTCAGGGAAATGAGATTTGATATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * * *
32874907 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGAT-TTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
** * * * *
32874951 AA-CATATTCCACTACAACTTCAGGGAGATAATG-TTTGCTA---T-
1 AATC-TGCTCCACTGCAACTTCAGAGAAATAA-GATTTGTTATCTTC
* * * *
32874992 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGAT-T-T--GTTAT--CTTC
* * * * * *
32875043 AATCTGTTCCACTGTAACTTTAGGGAAATGAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
* * * *
32875088 AGTCTACTCCACTGCAACTTCAGGGAGATAAG
1 AATCTGCTCCACTGCAACTTCAGAGAAATAAG
32875120 GTCTTTAATT
Statistics
Matches: 598, Mismatches: 155, Indels: 96
0.70 0.18 0.11
Matches are distributed among these distances:
40 2 0.00
41 106 0.18
42 8 0.01
43 4 0.01
44 132 0.22
45 212 0.35
46 1 0.00
47 13 0.02
49 3 0.01
50 8 0.01
51 109 0.18
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGAGAAATAAGATTTGTTATCTTC
Found at i:32875930 original size:6 final size:6
Alignment explanation
Indices: 32875921--32875978 Score: 59
Period size: 6 Copynumber: 9.8 Consensus size: 6
32875911 TTGGCCTCTC
* *
32875921 CTTTTT CTTTTT -TTTTT C-TTTT CTTTCT CTTTCT CTTTTCTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT C-TTT-TT CTTTTT
32875969 CTTTTT -TTTT
1 CTTTTT CTTTT
32875979 ATGAAACATT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
5 14 0.30
6 24 0.52
7 6 0.13
8 2 0.04
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
CTTTTT
Found at i:32875936 original size:11 final size:11
Alignment explanation
Indices: 32875922--32875978 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
32875912 TGGCCTCTCC
32875922 TTTTTCTTTTT
1 TTTTTCTTTTT
*
32875933 TTTTTCTTTTC
1 TTTTTCTTTTT
* *
32875944 TTTCTCTTTCT
1 TTTTTCTTTTT
* *
32875955 CTTTTC--TTC
1 TTTTTCTTTTT
32875964 TTTTTCTTTTT
1 TTTTTCTTTTT
32875975 TTTT
1 TTTT
32875979 ATGAAACATT
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
9 6 0.18
11 28 0.82
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:32875969 original size:16 final size:16
Alignment explanation
Indices: 32875923--32875974 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
32875913 GGCCTCTCCT
* *
32875923 TTTTCTTTTTTTTTTC
1 TTTTCTTCTTTTTCTC
*
32875939 TTTTCTTTCTCTTTCTC
1 TTTTC-TTCTTTTTCTC
32875956 TTTTCTTCTTTTTCT-
1 TTTTCTTCTTTTTCTC
32875971 TTTT
1 TTTT
32875975 TTTTATGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
15 4 0.13
16 14 0.45
17 13 0.42
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTCTTCTTTTTCTC
Found at i:32878601 original size:75 final size:75
Alignment explanation
Indices: 32878476--32878720 Score: 445
Period size: 75 Copynumber: 3.3 Consensus size: 75
32878466 ACCCATTTGG
* *
32878476 GTTAAACCTACACAACAAATGAAAATTGCTCCTCTAAGCTATTCAGAAACAATAGTGTCTAGTAA
1 GTTAAACCTACACAACAAATGAAAATTGCTCGTCTAAGCTATTCATAAACAATAGTGTCTAGTAA
32878541 CCCCGTCCGA
66 CCCCGTCCGA
*
32878551 GTTAAACCTACACAACAAATGAAAATTGCTCGTCTAAGTTATTCATAAACAATAGTGTCTAGTAA
1 GTTAAACCTACACAACAAATGAAAATTGCTCGTCTAAGCTATTCATAAACAATAGTGTCTAGTAA
32878616 CCCCGTCCGA
66 CCCCGTCCGA
*
32878626 GTTAAATCTACACAACAAATGAAAATTGCTCGTCTAAGCTATTCATAAACAATAGTGTCTAGTAA
1 GTTAAACCTACACAACAAATGAAAATTGCTCGTCTAAGCTATTCATAAACAATAGTGTCTAGTAA
*
32878691 CCCCATCCGA
66 CCCCGTCCGA
32878701 GTTAAACCTACACAACAAAT
1 GTTAAACCTACACAACAAAT
32878721 AGCTTGGCCA
Statistics
Matches: 163, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 163 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (75 bp):
GTTAAACCTACACAACAAATGAAAATTGCTCGTCTAAGCTATTCATAAACAATAGTGTCTAGTAA
CCCCGTCCGA
Found at i:32886947 original size:18 final size:18
Alignment explanation
Indices: 32886926--32886972 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
32886916 ATATTAAAGG
*
32886926 TAAAAATGTGATTTTTAA
1 TAAAAATGTGATTTTAAA
*
32886944 TAAAAAT-TTATTTTAAA
1 TAAAAATGTGATTTTAAA
*
32886961 GACAAAATGTGA
1 TA-AAAATGTGA
32886973 AATTGATATC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 9 0.39
18 12 0.52
19 2 0.09
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (18 bp):
TAAAAATGTGATTTTAAA
Found at i:32887076 original size:9 final size:9
Alignment explanation
Indices: 32887054--32887115 Score: 51
Period size: 9 Copynumber: 7.0 Consensus size: 9
32887044 TAATAACGAT
32887054 TAAATAAT-
1 TAAATAATA
32887062 TAAATAATA
1 TAAATAATA
*
32887071 TAAATAGTA
1 TAAATAATA
32887080 T-AA-AATA
1 TAAATAATA
32887087 TAAAATTTAAT-
1 T-AAA--TAATA
*
32887098 TCAATAATA
1 TAAATAATA
32887107 TAAATAATA
1 TAAATAATA
32887116 GACATAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 13
0.72 0.07 0.22
Matches are distributed among these distances:
7 4 0.09
8 14 0.33
9 19 0.44
10 2 0.05
11 1 0.02
12 3 0.07
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (9 bp):
TAAATAATA
Found at i:32887285 original size:19 final size:19
Alignment explanation
Indices: 32887259--32887296 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
32887249 AGTAAAATTT
32887259 TTTAGGAG-AAATAAAAGA
1 TTTAGGAGAAAATAAAAGA
32887277 TTTAGGGAGAAAATAAAAGA
1 TTTA-GGAGAAAATAAAAGA
32887297 AAAAATTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (19 bp):
TTTAGGAGAAAATAAAAGA
Found at i:32889130 original size:12 final size:12
Alignment explanation
Indices: 32889115--32889199 Score: 89
Period size: 12 Copynumber: 6.8 Consensus size: 12
32889105 AGGTATAAAT
*
32889115 ATAATGATAGTA
1 ATAATAATAGTA
32889127 ATAATAATAGTA
1 ATAATAATAGTA
* *
32889139 GTAATAATACTA
1 ATAATAATAGTA
*
32889151 ACAATAATAGTAAA
1 ATAATAATAGT--A
32889165 GATAATAATAGTAA
1 -ATAATAATAGT-A
*
32889179 ATAATAATAATA
1 ATAATAATAGTA
32889191 ATAATAATA
1 ATAATAATA
32889200 AAATAAACAA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
12 39 0.63
13 10 0.16
14 3 0.05
15 10 0.16
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (12 bp):
ATAATAATAGTA
Found at i:32889217 original size:3 final size:3
Alignment explanation
Indices: 32889115--32889205 Score: 78
Period size: 3 Copynumber: 30.3 Consensus size: 3
32889105 AGGTATAAAT
* * * * * * *
32889115 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
32889163 A-A GATA ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA A-A ATA A
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
32889206 ACAAAATAAT
Statistics
Matches: 70, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
2 3 0.04
3 64 0.91
4 3 0.04
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:32890685 original size:40 final size:40
Alignment explanation
Indices: 32890626--32890707 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
32890616 GTTTCTTTTG
* * * *
32890626 TCTGCTCCGCTATTGCTTAGAGAGATGAGACTTGATGCGA
1 TCTGCTCCACTACTACTTAGAGAGATAAGACTTGATGCGA
* *
32890666 TCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTACTTAGAGAGATAAGACTTGATGCGA
32890706 TC
1 TC
32890708 CACTCTGCTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.30
Consensus pattern (40 bp):
TCTGCTCCACTACTACTTAGAGAGATAAGACTTGATGCGA
Found at i:32890776 original size:44 final size:44
Alignment explanation
Indices: 32890715--32891209 Score: 242
Period size: 44 Copynumber: 11.5 Consensus size: 44
32890705 ATCCACTCTG
* * * *
32890715 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCA
* ** * * * *
32890759 CTGTAACTTCAGGGAGATAGGATAGTGT-CTTCGATCTGCTCCG
1 CTGTAACTTCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCA
* *** *
32890802 CTGTAATTTCAGGGAGATAAGAT-CTCTGGCTTCGATCTGCTCCA
1 CTGTAACTTCAGGGAGATAAGATCCT-TTATTTTGATCTGCTCCA
* *** * **
32890846 CTGTAACCTCAGGGAGATAAGATCCGAAATTCTTTGGTCTATTCCA
1 CTGTAACTTCAGGGAGATAAGATCCTTTA-T-TTTGATCTGCTCCA
* * * *
32890892 CTGTAA-TCTCAGGGAGATAAGA-CC-TGA-TGTGATCTTCTCTA
1 CTGTAACT-TCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCA
*
32890933 CTGTAACTTCAGGGAGATAAGATCCTTTA-----ATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCA
* * * * *
32890972 TTGTAA-TCTCAAGGAGATAGGAT--TACTATCTTTGATCTGCTCCG
1 CTGTAACT-TCAGGGAGATAAGATCCT-TTAT-TTTGATCTGCTCCA
* * ** **
32891016 CTGTAA-TCTCAGGGAGATAAGAT--TTGA-TGTGATCCACTCTG
1 CTGTAACT-TCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCA
* * * *
32891057 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACTTCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCA
* ** * * *
32891101 CTGTAACTTCAGGGAGATAGGAT--AGTATCTTCGATCTACTCCG
1 CTGTAACTTCAGGGAGATAAGATCCTTTAT-TTTGATCTGCTCCA
* *** *
32891144 CTGTAATTTCAGGGAGATAAGAT-CTCTGGCTTCGATCTGCTCCA
1 CTGTAACTTCAGGGAGATAAGATCCT-TTATTTTGATCTGCTCCA
*
32891188 CTGTAA-TCTCAGGGAGACAAGA
1 CTGTAACT-TCAGGGAGATAAGA
32891210 CCTGTATAAT
Statistics
Matches: 343, Mismatches: 83, Indels: 50
0.72 0.17 0.11
Matches are distributed among these distances:
37 1 0.00
38 3 0.01
39 25 0.07
41 59 0.17
42 7 0.02
43 68 0.20
44 147 0.43
45 3 0.01
46 30 0.09
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (44 bp):
CTGTAACTTCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCA
Found at i:32890819 original size:87 final size:86
Alignment explanation
Indices: 32890704--32891209 Score: 349
Period size: 87 Copynumber: 5.9 Consensus size: 86
32890694 GACTTGATGT
* * * * * *
32890704 GATCCACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTC
1 GATCTACTCCGCTGTAATCTCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCACTGTAACTTC
*
32890769 AGGGAGATAGGATAGTGTCTTC
66 AGGGAGATAAGATAGT-TCTTC
* * *** * *
32890791 GATCTGCTCCGCTGTAATTTCAGGGAGATAAGAT-CTCTGGCTTCGATCTGCTCCACTGTAACCT
1 GATCTACTCCGCTGTAATCTCAGGGAGATAAGATCCT-TTATTTTGATCTGCTCCACTGTAACTT
* *
32890855 CAGGGAGATAAGATCCGAAATTCTTT
65 CAGGGAGATAAGAT----AGTTCTTC
* * * * * * *
32890881 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA-CC-TGA-TGTGATCTTCTCTACTGTAACTTC
1 GATCTACTCCGCTGTAATCTCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCACTGTAACTTC
* *
32890943 AGGGAGATAAG--A-TCCTTT
66 AGGGAGATAAGATAGTTCTTC
* ** ** * * * *
32890961 AATCCGCTCCATTGTAATCTCAAGGAGATAGGAT--TACTATCTTTGATCTGCTCCGCTGTAA-T
1 GATCTACTCCGCTGTAATCTCAGGGAGATAAGATCCT-TTAT-TTTGATCTGCTCCACTGTAACT
*
32891023 CTCAGGGAGATAAGAT--TTGATGT-
64 -TCAGGGAGATAAGATAGTT-CT-TC
* * * * * *
32891046 GATCCACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTC
1 GATCTACTCCGCTGTAATCTCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCACTGTAACTTC
*
32891111 AGGGAGATAGGATAGTATCTTC
66 AGGGAGATAAGATAGT-TCTTC
* *** *
32891133 GATCTACTCCGCTGTAATTTCAGGGAGATAAGAT-CTCTGGCTTCGATCTGCTCCACTGTAA-TC
1 GATCTACTCCGCTGTAATCTCAGGGAGATAAGATCCT-TTATTTTGATCTGCTCCACTGTAACT-
*
32891196 TCAGGGAGACAAGA
64 TCAGGGAGATAAGA
32891210 CCTGTATAAT
Statistics
Matches: 322, Mismatches: 72, Indels: 50
0.73 0.16 0.11
Matches are distributed among these distances:
80 30 0.09
81 2 0.01
82 1 0.00
83 29 0.09
84 1 0.00
85 57 0.18
86 11 0.03
87 153 0.48
88 3 0.01
90 33 0.10
91 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (86 bp):
GATCTACTCCGCTGTAATCTCAGGGAGATAAGATCCTTTATTTTGATCTGCTCCACTGTAACTTC
AGGGAGATAAGATAGTTCTTC
Found at i:32891037 original size:124 final size:124
Alignment explanation
Indices: 32890883--32891165 Score: 363
Period size: 124 Copynumber: 2.2 Consensus size: 124
32890873 AATTCTTTGG
* * ** * *
32890883 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGGGA
1 TCTACTCCGCTGTAATCTCAGGGAGATAAGACCTGATGTGATCCACTCTACTGTAACCTCAGAGA
* *
32890948 GATAAGATCC-TTTAATCCGCTCCATTGTAA-TCTCAAGGAGATAGGATTACTATCTTTGA
66 GATAAGATCCTTTTAATCCGCTCCACTGTAACT-TCAAGGAGATAGGA-TACTATCTTCGA
* ** *
32891007 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTGATGTGATCCACTCTGCTGTAACCTCAGAGA
1 TCTACTCCGCTGTAATCTCAGGGAGATAAGACCTGATGTGATCCACTCTACTGTAACCTCAGAGA
* *
32891072 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTATCTTCGA
66 GATAAGATCC----TTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGA
*
32891135 TCTACTCCGCTGTAATTTCAGGGAGATAAGA
1 TCTACTCCGCTGTAATCTCAGGGAGATAAGA
32891166 TCTCTGGCTT
Statistics
Matches: 137, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
124 65 0.47
128 39 0.28
129 32 0.23
130 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (124 bp):
TCTACTCCGCTGTAATCTCAGGGAGATAAGACCTGATGTGATCCACTCTACTGTAACCTCAGAGA
GATAAGATCCTTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATACTATCTTCGA
Found at i:32897158 original size:124 final size:125
Alignment explanation
Indices: 32896938--32897207 Score: 315
Period size: 124 Copynumber: 2.2 Consensus size: 125
32896928 TCATTCCACG
** * *
32896938 TGTAATCTCAGGGAGATAAGA-CCTGATGTGATCTTCTCTCTGTAACTTCAGGGAGATAAGATCC
1 TGTAATCTCAGGGAGATAAGATCCTGATGTGATCCACTCTCTGTAACCTCAGAGAGATAAGATCC
* *
32897002 TTTAATCCGCGTCCATTGTAAATCTCAAGGAGATAGGATTACTATCTT-TA-CTGCTCCGC
66 TTTAATCCGCGTCCATTGTAAATCTCAAGGAGATAGGA-TACTATCTTCGATCTACTCCGC
**
32897061 T-TAATCTCAGGGAGATAAGATTTTGATGTGATCCACTCTGCTGTAACCTCAGAGAGATAAGATC
1 TGTAATCTCAGGGAGATAAGATCCTGATGTGATCCACTCT-CTGTAACCTCAGAGAGATAAGATC
* * *
32897125 CTTATTTTAAT-CGC-TCCA-TGTAACT-TCAGGGAGATAGGATAGTATCTTCGATCTACTCCGC
65 C----TTTAATCCGCGTCCATTGTAAATCTCAAGGAGATAGGATACTATCTTCGATCTACTCCGC
*
32897186 TGTAATTTCA-GGAGATAAGATC
1 TGTAATCTCAGGGAGATAAGATC
32897208 TCTGCTTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
122 19 0.15
123 23 0.18
124 37 0.30
125 26 0.21
126 11 0.09
127 3 0.02
128 6 0.05
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (125 bp):
TGTAATCTCAGGGAGATAAGATCCTGATGTGATCCACTCTCTGTAACCTCAGAGAGATAAGATCC
TTTAATCCGCGTCCATTGTAAATCTCAAGGAGATAGGATACTATCTTCGATCTACTCCGC
Found at i:32899992 original size:12 final size:12
Alignment explanation
Indices: 32899977--32900069 Score: 89
Period size: 12 Copynumber: 7.6 Consensus size: 12
32899967 AGGTATAAAT
*
32899977 ATAATGATAGTA
1 ATAATAATAGTA
32899989 ATAATAATAGTA
1 ATAATAATAGTA
* *
32900001 GTAATAATACTA
1 ATAATAATAGTA
*
32900013 ACAATAATAGTAA
1 ATAATAATAGT-A
*
32900026 AGATATAATAGTAA
1 ATA-ATAATAGT-A
*
32900040 ATAATAATAATA
1 ATAATAATAGTA
*
32900052 ATAATAATAATA
1 ATAATAATAGTA
32900064 A-AATAA
1 ATAATAA
32900070 ACAAAATAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
11 5 0.07
12 43 0.61
13 10 0.14
14 12 0.17
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (12 bp):
ATAATAATAGTA
Found at i:32900081 original size:3 final size:3
Alignment explanation
Indices: 32899977--32900069 Score: 75
Period size: 3 Copynumber: 31.3 Consensus size: 3
32899967 AGGTATAAAT
* * * * * * *
32899977 ATA ATG ATA GTA ATA ATA ATA GTA GTA ATA ATA CTA ACA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
32900025 A-A GAT- ATA ATA GTAA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA -ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32900069 A
1 A
32900070 ACAAAATAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 10
0.75 0.15 0.11
Matches are distributed among these distances:
2 5 0.07
3 64 0.90
4 2 0.03
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:32903992 original size:153 final size:153
Alignment explanation
Indices: 32903808--32904916 Score: 1485
Period size: 153 Copynumber: 7.3 Consensus size: 153
32903798 TTAGTGTGTT
* * * * *
32903808 TTTTATTAAAAGTAATAAAATTCGGTAAAAAAATACGAATAAAGGGCCGAAAAAAGTTTTTTTTT
1 TTTT-TTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAGTGTTTTTTT
*
32903873 TAAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAA
65 TAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAA
32903938 ATAATAAAATTAGAAAATATTATA
130 ATAATAAAATTAGAAAATATTATA
*
32903962 TTTTTTAAAAGTAATAAAATCCGGGGAAAAAATACGAACAAAGGGCCGAAATAA-TGGTTTTTTT
1 TTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAGT-GTTTTTTT
* * * *
32904026 AAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAACATAATATATTAAAATAATATAAA
65 TAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAA
* *
32904091 ATAATAAAA-TACGAAAATAATATT
130 ATAATAAAATTA-GAAAATATTATA
* *
32904115 TTTTATTGAAAGTAATAAAATCC-GGAAAAAAATACGAATAAAGGGCCGAAATAAG-GATTTTTT
1 TTTT-TTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAGTG-TTTTTT
* * * *
32904178 TAAAATTTATTT-AAAAACACACTAAATGAATACATTTAAAACATAATGTATTAAAATAATGTAA
64 TTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAA
*
32904242 AATAATAAAATTAGAAAATAGTA-A
129 AATAATAAAATTAGAAAATATTATA
* * *
32904266 TTTTTTTAAAGTAATAAAATTCAGGGAAAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTTTT
1 TTTTTTAAAAGTAATAAAA-TCCGGGAAAAAAATACGAACAAAGGGCCGAAATAA-GTGTTTTTT
* * * * * *
32904331 TTAAATTTATTTAAAAAACATAGTAAATTAACATATTTCAAATATAATGTACTAAAATAATATAA
64 TTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAA
*
32904396 AATAATAAAATTAGAAAAAAAATTATA
129 AATAATAAAATTAG--AAAATATTATA
* * *
32904423 TTTTTTAAAAATAATAAAATTCGAGAAAAAAATACGAACAAAGGGCCGAAATAA-TGGTTTTTTT
1 TTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAGT-GTTTTTTT
* *
32904487 AAAATTTATTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAA
65 TAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAA
*
32904552 ATAATAAAATTAGAAAATAGTATA
130 ATAATAAAATTAGAAAATATTATA
* * * * * *
32904576 TTTTTTTAAAGTAATAGACTCTAGGGAAAAAAATACGAACAAATGGCCGAAATAAGGGTTTTTTT
1 TTTTTTAAAAGTAATAAAATC-CGGGAAAAAAATACGAACAAAGGGCCGAAATAAGTGTTTTTTT
* *
32904641 T-AATTTATTTAAAAAA-ACACTAAATTAATACATTTCAAACTTGATGTACTAAAATAATGTAAA
65 TAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAA
*
32904704 ATAATAAAATTAGAAAAATAATATA
130 ATAATAAAATTAG-AAAATATTATA
* ** * * *
32904729 TTTTTATTGAAAGTAATAAAATCCGGG-AAAAAATACGAACAAAATGCAGAAATAA-AG-ATTTT
1 -TTTT-TTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAGTGTTTTTT
* * *
32904791 TT-AATTTATTTAAAAAACACACTAAATTAATAAATTTAAAATATAATGTACTAAAATAATGTAA
64 TTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAA
32904855 AATAA-AAAA-TAGAAAATATTATA
129 AATAATAAAATTAGAAAATATTATA
*
32904878 TTTTTTAAAAGTAATAAAATCC-GAAAAAAAATACGAACA
1 TTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAACA
32904917 GATGACTAAA
Statistics
Matches: 850, Mismatches: 83, Indels: 51
0.86 0.08 0.05
Matches are distributed among these distances:
146 1 0.00
147 31 0.04
148 4 0.00
149 10 0.01
150 17 0.02
151 31 0.04
152 205 0.24
153 277 0.33
154 124 0.15
155 93 0.11
156 39 0.05
157 18 0.02
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.31
Consensus pattern (153 bp):
TTTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAACAAAGGGCCGAAATAAGTGTTTTTTTT
AAATTTATTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAA
TAATAAAATTAGAAAATATTATA
Found at i:32904484 original size:461 final size:461
Alignment explanation
Indices: 32903807--32904916 Score: 1658
Period size: 461 Copynumber: 2.4 Consensus size: 461
32903797 TTTAGTGTGT
* *
32903807 TTTTTATTAAAAGTAATAAAATTCGGTAAAAAAATACGAATAAAGGGCCGAAA-AAAGTTTTTTT
1 TTTTTATTAAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGTTTTTTT
* * *
32903871 TTTAAATTTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTA
66 TTTAAATTTATTTAAAAAACACACTAAATTAATAAATTTCAAATATAATGTACTAAAATAATGTA
* *
32903936 AAATAATAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGGGGAAAAAATACGAAC
131 AAATAATAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGAGAAAAAAATACGAAC
32904001 AAAGGGCCGAAATAATGGTTTTTTTAAAATTTATTTAAAAAACACACTAAATTAATACATTTCAA
196 AAAGGGCCGAAATAATGGTTTTTTTAAAATTTATTTAAAAAACACACTAAATTAATACATTTCAA
*
32904066 ACATAATATATTAAAATAATATAAAATAATAAAA-TACGAAAATAATAT-TTTTTATTGAAAGTA
261 ACATAATATACTAAAATAATATAAAATAATAAAATTA-GAAAATAATATATTTTT-TT-AAAGTA
*
32904129 ATAAAATC-CGGAAAAAAATACGAATAAAGGGCCGAAATAAGGATTTTTTTAAAATTTATTTAAA
323 ATAAAATCACGGAAAAAAATACGAACAAAGGGCCGAAATAAGGATTTTTTT-AAATTTATTTAAA
* *
32904193 AACACACTAAATGAATACATTTAAAACATAATGTATTAAAATAATGTAAAATAATAAAATTAG-A
387 AAAACACTAAATGAATACATTTAAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAA
*
32904257 AAATAGTA-A
452 AAATAATATA
*
32904266 TTTTT-TT-AAAGTAATAAAATTCAGGGAAAAAAATACGAACAAAGGGCCGAAATAAGGTTTTTT
1 TTTTTATTAAAAGTAATAAAATTC-GGGAAAAAAATACGAACAAAGGGCCGAAATAAAGTTTTTT
* * * * *
32904329 TTTTAAATTTATTTAAAAAACATAGTAAATTAACATATTTCAAATATAATGTACTAAAATAATAT
65 TTTTAAATTTATTTAAAAAACACACTAAATTAATAAATTTCAAATATAATGTACTAAAATAATGT
* * *
32904394 AAAATAATAAAATTAGAAAAAAAATTATATTTTTTAAAAATAATAAAATTCGAGAAAAAAATACG
130 AAAATAATAAAATTAG--AAAATATTATATTTTTTAAAAGTAATAAAATCCGAGAAAAAAATACG
*
32904459 AACAAAGGGCCGAAATAATGGTTTTTTTAAAATTTATTTAAAAAACACAGTAAATTAATACATTT
193 AACAAAGGGCCGAAATAATGGTTTTTTTAAAATTTATTTAAAAAACACACTAAATTAATACATTT
* * *
32904524 CAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTTAAAGTA
258 CAAACATAATATACTAAAATAATATAAAATAATAAAATTAGAAAATAATATATTTTTTTAAAGTA
* * * * * *
32904589 ATAGACTCTAGGGAAAAAAATACGAACAAATGGCCGAAATAAGGGTTTTTTTTAATTTATTTAAA
323 ATAAAATC-ACGGAAAAAAATACGAACAAAGGGCCGAAATAAGGATTTTTTTAAATTTATTTAAA
* * * *
32904654 AAAACACTAAATTAATACATTTCAAACTTGATGTACTAAAATAATGTAAAATAATAAAATTAGAA
387 AAAACACTAAATGAATACATTTAAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAA
32904719 AAATAATATA
452 AAATAATATA
* * ** * *
32904729 TTTTTATTGAAAGTAATAAAATCCGGG-AAAAAATACGAACAAAATGCAGAAATAAAG---ATTT
1 TTTTTATTAAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGTTTTTTT
*
32904790 TTT-AATTTATTTAAAAAACACACTAAATTAATAAATTTAAAATATAATGTACTAAAATAATGTA
66 TTTAAATTTATTTAAAAAACACACTAAATTAATAAATTTCAAATATAATGTACTAAAATAATGTA
32904854 AAATAA-AAAA-TAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGA-AAAAAAATACGAAC
131 AAATAATAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGAGAAAAAAATACGAAC
32904916 A
196 A
32904917 GATGACTAAA
Statistics
Matches: 590, Mismatches: 49, Indels: 29
0.88 0.07 0.04
Matches are distributed among these distances:
454 15 0.03
455 32 0.05
457 18 0.03
458 33 0.06
459 149 0.25
460 18 0.03
461 221 0.37
462 53 0.09
463 32 0.05
464 5 0.01
465 14 0.02
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.31
Consensus pattern (461 bp):
TTTTTATTAAAAGTAATAAAATTCGGGAAAAAAATACGAACAAAGGGCCGAAATAAAGTTTTTTT
TTTAAATTTATTTAAAAAACACACTAAATTAATAAATTTCAAATATAATGTACTAAAATAATGTA
AAATAATAAAATTAGAAAATATTATATTTTTTAAAAGTAATAAAATCCGAGAAAAAAATACGAAC
AAAGGGCCGAAATAATGGTTTTTTTAAAATTTATTTAAAAAACACACTAAATTAATACATTTCAA
ACATAATATACTAAAATAATATAAAATAATAAAATTAGAAAATAATATATTTTTTTAAAGTAATA
AAATCACGGAAAAAAATACGAACAAAGGGCCGAAATAAGGATTTTTTTAAATTTATTTAAAAAAA
CACTAAATGAATACATTTAAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAAAT
AATATA
Found at i:32905077 original size:19 final size:18
Alignment explanation
Indices: 32905045--32905088 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
32905035 AATAAAAAAA
*
32905045 ATTTATATTATTTTGATATT
1 ATTT-TATTATTTTG-TAAT
*
32905065 ATTTTATTTTTTTGTAAT
1 ATTTTATTATTTTGTAAT
32905083 ATTTTA
1 ATTTTA
32905089 GTAAAAATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.41
19 9 0.41
20 4 0.18
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
ATTTTATTATTTTGTAAT
Found at i:32918460 original size:23 final size:23
Alignment explanation
Indices: 32918417--32918459 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
32918407 TTCCTTTTTT
32918417 TTATTTTCATCACTTTTAAAATG
1 TTATTTTCATCACTTTTAAAATG
*
32918440 TTATTTT-ATTACTTTTAAAA
1 TTATTTTCATCACTTTTAAAA
32918460 AAATAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (23 bp):
TTATTTTCATCACTTTTAAAATG
Found at i:32919212 original size:27 final size:25
Alignment explanation
Indices: 32919197--32919254 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 25
32919187 AAAATATTTA
32919197 TAAAATAAAAATTAAATAATAAATT
1 TAAAATAAAAATTAAATAATAAATT
32919222 TAAAATAAAATAGGATTAAATAATAAATT
1 TAAAAT-AAA-A--ATTAAATAATAAATT
32919251 TAAA
1 TAAA
32919255 TTTTTTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.21
26 3 0.10
27 1 0.03
29 19 0.66
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (25 bp):
TAAAATAAAAATTAAATAATAAATT
Found at i:32933349 original size:16 final size:15
Alignment explanation
Indices: 32933308--32933350 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
32933298 CATAGAAAAC
32933308 AAAACAAACA-AATCA
1 AAAACAAA-ATAATCA
32933323 AAAACAAAATAATCA
1 AAAACAAAATAATCA
*
32933338 AAATATAAAATAA
1 AAA-ACAAAATAA
32933351 GAATAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 1 0.04
15 16 0.64
16 8 0.32
ACGTcount: A:0.74, C:0.12, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAACAAAATAATCA
Found at i:32935548 original size:15 final size:15
Alignment explanation
Indices: 32935530--32935580 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
32935520 AGATTATTTA
*
32935530 TTATTATTATTAGTG
1 TTATTATTATTAATG
* *
32935545 TTATTATTACTAATA
1 TTATTATTATTAATG
*
32935560 TTATTATT-TATATTG
1 TTATTATTAT-TAATG
32935575 TTATTA
1 TTATTA
32935581 CACTAGTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (15 bp):
TTATTATTATTAATG
Found at i:32935883 original size:12 final size:12
Alignment explanation
Indices: 32935842--32935884 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
32935832 TATTTCAACT
32935842 TATATA-TATGTA
1 TATATATTAT-TA
*
32935854 TATATATTATCA
1 TATATATTATTA
32935866 TATATATTATTA
1 TATATATTATTA
*
32935878 TTTATAT
1 TATATAT
32935885 CAAGCTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
12 24 0.89
13 3 0.11
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (12 bp):
TATATATTATTA
Found at i:32938154 original size:25 final size:25
Alignment explanation
Indices: 32938108--32938158 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
32938098 ACATAAAAGG
* *
32938108 AACAAACTTAACTAATTGAAACTAA
1 AACAAACTGAAATAATTGAAACTAA
32938133 AACAAACTGAAATACATT-AAACTAA
1 AACAAACTGAAATA-ATTGAAACTAA
32938158 A
1 A
32938159 GTTAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 20 0.87
26 3 0.13
ACGTcount: A:0.59, C:0.16, G:0.04, T:0.22
Consensus pattern (25 bp):
AACAAACTGAAATAATTGAAACTAA
Found at i:32940418 original size:27 final size:27
Alignment explanation
Indices: 32940381--32940469 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
32940371 CCGTGAAGGA
32940381 TTTCTTTCATGTTATGCCACAAAAGCT
1 TTTCTTTCATGTTATGCCACAAAAGCT
* * *
32940408 TTTTTTTCATGTTATACCGCAAAAGCT
1 TTTCTTTCATGTTATGCCACAAAAGCT
* * * *
32940435 CTTCTTTCATGTTACGCCATAAAGGCT
1 TTTCTTTCATGTTATGCCACAAAAGCT
32940462 TTTCTTTC
1 TTTCTTTC
32940470 TTGACGTGCT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (27 bp):
TTTCTTTCATGTTATGCCACAAAAGCT
Found at i:32942597 original size:19 final size:19
Alignment explanation
Indices: 32942551--32942606 Score: 94
Period size: 21 Copynumber: 2.8 Consensus size: 19
32942541 AATCTTCAAG
32942551 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32942570 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
32942591 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
32942607 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.46
21 19 0.54
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:32942628 original size:23 final size:22
Alignment explanation
Indices: 32942551--32942629 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 22
32942541 AATCTTCAAG
*
32942551 GATATGCAATCTTAG-ATATGAT
1 GATATGCAATCTTAGAAGAT-AT
32942573 -ATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
32942591 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
32942613 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
32942630 GATTTAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
18 2 0.04
19 15 0.31
21 12 0.24
22 8 0.16
23 12 0.24
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:32942878 original size:23 final size:23
Alignment explanation
Indices: 32942834--32942878 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
32942824 TCTTATTTTG
* *
32942834 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
*
32942857 TTGATTTGTATATTATTGATTT
1 TTGATTTGTATATAATTGATTT
32942879 CAAATATCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:32943304 original size:21 final size:21
Alignment explanation
Indices: 32943263--32943311 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
32943253 GTTTCATAAT
*
32943263 TTTATA-TACATACTTATATA
1 TTTATATTACATACTTAAATA
32943283 TTTATATTACATA-TTAAAATA
1 TTTATATTACATACTT-AAATA
*
32943304 TGTATATT
1 TTTATATT
32943312 TATATTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (21 bp):
TTTATATTACATACTTAAATA
Found at i:32943329 original size:7 final size:8
Alignment explanation
Indices: 32943314--32943339 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
32943304 TGTATATTTA
32943314 TATTTTTT
1 TATTTTTT
32943322 TATTTTTT
1 TATTTTTT
32943330 TATTTTTT
1 TATTTTTT
32943338 TA
1 TA
32943340 ATTCATATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (8 bp):
TATTTTTT
Found at i:32943358 original size:25 final size:23
Alignment explanation
Indices: 32943330--32943387 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 23
32943320 TTTATTTTTT
32943330 TATTTTTTTAATTCATATACATATA
1 TATTTTTTTAA-T-ATATACATATA
*
32943355 TATTTTTCTT-ATATGTACATATA
1 TATTTTT-TTAATATATACATATA
*
32943378 TATATTTTTA
1 TATTTTTTTA
32943388 TATTTTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
22 2 0.07
23 16 0.55
24 1 0.03
25 8 0.28
26 2 0.07
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTTTTTTAATATATACATATA
Found at i:32943373 original size:23 final size:22
Alignment explanation
Indices: 32943347--32943390 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
32943337 TTAATTCATA
*
32943347 TACATATATATTTTTCTTATATG
1 TACATATATATATTT-TTATATG
32943370 TACATATATATATTTTTATAT
1 TACATATATATATTTTTATAT
32943391 TTTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (22 bp):
TACATATATATATTTTTATATG
Found at i:32947273 original size:9 final size:9
Alignment explanation
Indices: 32947261--32947289 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
32947251 CAAATAAATC
32947261 AAATTAAAA
1 AAATTAAAA
32947270 AAATTAAAA
1 AAATTAAAA
32947279 AAATTAAAA
1 AAATTAAAA
32947288 AA
1 AA
32947290 TGAAGAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAATTAAAA
Found at i:32949779 original size:45 final size:46
Alignment explanation
Indices: 32949712--32950740 Score: 1228
Period size: 45 Copynumber: 22.9 Consensus size: 46
32949702 CTGTAGAGAA
*
32949712 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAAAAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * *
32949758 -AAATCTTGTCTTCCTGTATTGGCA-TGAAGTAGATC--A-AAGAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
**
32949799 CAGGCCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG-ATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
*
32949844 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAG-ATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* *
32949889 CAGATCTTGTCTTCCTGTACTGGTAGCGAAGTAGATCGAAG-ATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
*
32949934 TAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG-ATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * *
32949979 TAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATCGAAG-ATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
*
32950024 CAGATCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAA-AATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* *
32950069 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAG-ATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * *
32950114 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * *
32950159 CAGATCTTATCTTCTTGTATTGGCAACGAAGTAGATCAAAG-ATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * *
32950204 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAA-TATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * *
32950249 CAGATCTTGTCTTCCCGTACTGTCAGCGAAGTAGATCAAAG-ATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * *
32950294 TAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* *
32950339 CAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATC-AA-ATATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA-ATAG
* * *
32950384 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * * *
32950429 TAGATCTTGTCTTCCTGTATTGACAGTGAAGTAGATCAAAG-ATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * *
32950474 CAGATCTTGTCTTCATGTACTGGCAGTGAAGTAGATCAAAG-ATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * * *
32950519 CAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAG-ATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * * *
32950564 TAGATCTTTTCTTCTTGTATTGGCAGCGAAGTAGATCAAAG-ATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * * * * *
32950609 CAGATCTGGGCTTCCTATATTGGTAGGGAAGTGGATCGAAG-ATAA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
*
32950654 CGGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA-AATAG
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
* * * *
32950699 TAGATCTTATCTTCCTGTATTGGCAGAGAAGTAGATTGAAGA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGA
32950741 CAGAAGTAAC
Statistics
Matches: 852, Mismatches: 116, Indels: 30
0.85 0.12 0.03
Matches are distributed among these distances:
41 4 0.00
42 22 0.03
43 10 0.01
44 12 0.01
45 801 0.94
46 3 0.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (46 bp):
CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAATAG
Found at i:32949927 original size:90 final size:90
Alignment explanation
Indices: 32949712--32950734 Score: 1352
Period size: 90 Copynumber: 11.4 Consensus size: 90
32949702 CTGTAGAGAA
* * *
32949712 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAAAAG-AAATCTTGTCTTCCTGTA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAG-ATAGCAGATCTTGTCTTCCTGTA
* *
32949776 TTGGCA-TGAAGTAGATC-AA-AGAG
65 TTGGCAGCGAAGTAGATCGAAGATAG
** *
32949799 CAGGCCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
*
32949864 TGGCAGTGAAGTAGATCGAAGATAG
66 TGGCAGCGAAGTAGATCGAAGATAG
* * * *
32949889 CAGATCTTGTCTTCCTGTACTGGTAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
32949954 TGGCAGCGAAGTAGATCGAAGATAG
66 TGGCAGCGAAGTAGATCGAAGATAG
* * * *
32949979 TAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* *
32950044 TGGCAGCAAAGTAGATCGAAAATAG
66 TGGCAGCGAAGTAGATCGAAGATAG
* *
32950069 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* *
32950134 TGGTAGCGAAGTAGATCGAAGATAA
66 TGGCAGCGAAGTAGATCGAAGATAG
* * * *
32950159 CAGATCTTATCTTCTTGTATTGGCAACGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* * *
32950224 TGGTAGCGAAGTAGATCGAATATAA
66 TGGCAGCGAAGTAGATCGAAGATAG
* * * * *
32950249 CAGATCTTGTCTTCCCGTACTGTCAGCGAAGTAGATCAAAGATAGTAGATCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* *
32950314 TGGTAGCGAAGTAGATCGAAGATAA
66 TGGCAGCGAAGTAGATCGAAGATAG
* * * *
32950339 CAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATCAAATATAGCAGATCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* *
32950404 TGGTAGCGAAGTAGATCGAAGATAA
66 TGGCAGCGAAGTAGATCGAAGATAG
* * * * * *
32950429 TAGATCTTGTCTTCCTGTATTGACAGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCATGTAC
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* *
32950494 TGGCAGTGAAGTAGATCAAAGATAG
66 TGGCAGCGAAGTAGATCGAAGATAG
* * * ** * *
32950519 CAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAATAGATCTTTTCTTCTTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
* *
32950584 TGGCAGCGAAGTAGATCAAAGATAA
66 TGGCAGCGAAGTAGATCGAAGATAG
* * * * * * * * *
32950609 CAGATCTGGGCTTCCTATATTGGTAGGGAAGTGGATCGAAGATAACGGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
*
32950674 TGGCAGCGAAGTAGATCGAAAATAG
66 TGGCAGCGAAGTAGATCGAAGATAG
* * *
32950699 TAGATCTTATCTTCCTGTATTGGCAGAGAAGTAGAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGAT
32950735 TGAAGACAGA
Statistics
Matches: 841, Mismatches: 91, Indels: 5
0.90 0.10 0.01
Matches are distributed among these distances:
86 3 0.00
87 62 0.07
88 11 0.01
89 2 0.00
90 763 0.91
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (90 bp):
CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTGTAT
TGGCAGCGAAGTAGATCGAAGATAG
Found at i:32949996 original size:135 final size:135
Alignment explanation
Indices: 32949712--32950740 Score: 1355
Period size: 135 Copynumber: 7.6 Consensus size: 135
32949702 CTGTAGAGAA
* *
32949712 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGAAAAG-AAATCTTGTCTTCCTGTA
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAG-ATAGTAGATCTTGTCTTCCTGTA
* * **
32949776 TTGGCA-TGAAGTAGATC-AA-AGAGCAGGCCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGA
65 TTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGA
32949838 AGATAG
130 AGATAG
* * *
32949844 CAGATCTTGTCTTCCTGTATTGGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAC
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
* *
32949909 TGGTAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
66 TGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
32949974 GATAG
131 GATAG
* * * *
32949979 TAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
* * * *
32950044 TGGCAGCAAAGTAGATCGAAAATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAA
66 TGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
32950109 GATAG
131 GATAG
* * ** * *
32950114 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAACAGATCTTATCTTCTTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
* * * *
32950179 TGGCAACGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAA
66 TGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
* *
32950244 TATAA
131 GATAG
* * * * *
32950249 CAGATCTTGTCTTCCCGTACTGTCAGCGAAGTAGATCAAAGATAGTAGATCTTGTCTTCCTATAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
* * * * *
32950314 TGGTAGCGAAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATCAAA
66 TGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
*
32950379 TATAG
131 GATAG
* * *
32950384 CAGATCTTGTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATAATAGATCTTGTCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
* * * * * * * *
32950449 TGACAGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCATGTACTGGCAGTGAAGTAGATCAAA
66 TGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
32950514 GATAG
131 GATAG
* * * * * * *
32950519 CAGATCTTGTCTTCCTATATTGGTAGTGAAGTAGATCAAAGATAATAGATCTTTTCTTCTTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
* * * * * * * *
32950584 TGGCAGCGAAGTAGATCAAAGATAACAGATCTGGGCTTCCTATATTGGTAGGGAAGTGGATCGAA
66 TGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
*
32950649 GATAA
131 GATAG
* * *
32950654 CGGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAAATAGTAGATCTTATCTTCCTGTAT
1 CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
* *
32950719 TGGCAGAGAAGTAGATTGAAGA
66 TGGCAGCGAAGTAGATCGAAGA
32950741 CAGAAGTAAC
Statistics
Matches: 791, Mismatches: 102, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
131 3 0.00
132 61 0.08
133 10 0.01
134 2 0.00
135 715 0.90
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (135 bp):
CAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGTAGATCTTGTCTTCCTGTAT
TGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAA
GATAG
Found at i:32950891 original size:44 final size:44
Alignment explanation
Indices: 32950835--32950953 Score: 148
Period size: 44 Copynumber: 2.7 Consensus size: 44
32950825 CAGATCGCAT
* * * *
32950835 CCAGTCTCATCTCCTTGAGGTTGCAGTGGAGCAAATTGAATAAG
1 CCAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAAATTGAAGAAA
** *
32950879 CCAGTCTTATCTCCCTGAGGTTGCAGTGGAATAGATTGAAGAAA
1 CCAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAAATTGAAGAAA
* * *
32950923 CCAATCCTATCTCCCTGAAGTTGCAGTGGAG
1 CCAGTCTTATCTCCCTGAGGTTGCAGTGGAG
32950954 TGGATCAGAA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (44 bp):
CCAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAAATTGAAGAAA
Found at i:32951540 original size:19 final size:19
Alignment explanation
Indices: 32951494--32951549 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
32951484 AATCTTCAAG
*
32951494 GATATGCAATCTTACATAT
1 GATATGCAATCTTAGATAT
32951513 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
32951534 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
32951550 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 16 0.47
21 18 0.53
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:32951575 original size:22 final size:22
Alignment explanation
Indices: 32951494--32951572 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 22
32951484 AATCTTCAAG
* *
32951494 GATATGCAATCTTA-CATATGAT
1 GATATGCAATCTTAGAAGAT-AT
32951516 -ATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
32951534 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
32951556 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
32951573 GATTTAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
18 2 0.04
19 15 0.31
21 12 0.24
22 8 0.16
23 12 0.24
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:32952297 original size:23 final size:22
Alignment explanation
Indices: 32952268--32952311 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
32952258 ATAATTCACA
*
32952268 TACATATATATTTTTCTTATATG
1 TACATATATATATTT-TTATATG
32952291 TACATATATATATTTTTATAT
1 TACATATATATATTTTTATAT
32952312 TTTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (22 bp):
TACATATATATATTTTTATATG
Found at i:32957623 original size:32 final size:32
Alignment explanation
Indices: 32957586--32957718 Score: 143
Period size: 32 Copynumber: 4.2 Consensus size: 32
32957576 TGAATTTAAA
*
32957586 TGTATATGTTTTATACATTGCCGAATTTGATT
1 TGTATATGTTATATACATTGCCGAATTTGATT
32957618 TGTATATGGTT-TATACATTGCCGAATTTGATT
1 TGTATAT-GTTATATACATTGCCGAATTTGATT
* *
32957650 TGTATATAG--ATATACAGTACCGAA-TTGATT
1 TGTATAT-GTTATATACATTGCCGAATTTGATT
* *
32957680 TG--TATGTAGATATACATTGCTGAATTTGATT
1 TGTATATGT-TATATACATTGCCGAATTTGATT
*
32957711 CGTATATG
1 TGTATATG
32957719 GATATATATT
Statistics
Matches: 86, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
27 1 0.01
28 3 0.03
30 20 0.23
31 19 0.22
32 36 0.42
33 7 0.08
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (32 bp):
TGTATATGTTATATACATTGCCGAATTTGATT
Found at i:32957708 original size:61 final size:63
Alignment explanation
Indices: 32957597--32957724 Score: 170
Period size: 61 Copynumber: 2.1 Consensus size: 63
32957587 GTATATGTTT
* * * * *
32957597 TATACATTGCCGAATTTGATTTGTATATGGTTTATACATTGCCGAATTTGATTTGTATATAGA
1 TATACAGTACCGAATTTGATTTGTATATAGTATATACATTGCCGAATTTGATTCGTATATAGA
* * *
32957660 TATACAGTACCGAA-TTGATTTGTATGTAG-ATATACATTGCTGAATTTGATTCGTATATGGA
1 TATACAGTACCGAATTTGATTTGTATATAGTATATACATTGCCGAATTTGATTCGTATATAGA
32957721 TATA
1 TATA
32957725 TATTGTTGAA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
61 32 0.56
62 13 0.23
63 12 0.21
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.42
Consensus pattern (63 bp):
TATACAGTACCGAATTTGATTTGTATATAGTATATACATTGCCGAATTTGATTCGTATATAGA
Found at i:32957736 original size:31 final size:31
Alignment explanation
Indices: 32957597--32957729 Score: 169
Period size: 31 Copynumber: 4.3 Consensus size: 31
32957587 GTATATGTTT
* *
32957597 TATACATTGCCGAATTTGATTTGTATATGGTT
1 TATACATTGCCGAATTTGATTTGTATATAG-A
32957629 TATACATTGCCGAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * *
32957660 TATACAGTACCGAA-TTGATTTGTATGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * *
32957690 TATACATTGCTGAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
32957721 TATATATTG
1 TATACATTG
32957730 TTGAATTGAT
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
30 26 0.30
31 33 0.38
32 29 0.33
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:32957752 original size:31 final size:31
Alignment explanation
Indices: 32957597--32957752 Score: 133
Period size: 31 Copynumber: 5.0 Consensus size: 31
32957587 GTATATGTTT
* *
32957597 TATACATTGCCGAATTTGATTT-GTATATGGTT
1 TATACATTGCTGAA-TTGATTTCGTATATGG-A
* *
32957629 TATACATTGCCGAATTTGATTT-GTATATAGA
1 TATACATTGCTGAA-TTGATTTCGTATATGGA
* * * * *
32957660 TATACAGTACCGAATTGATTT-GTATGTAGA
1 TATACATTGCTGAATTGATTTCGTATATGGA
32957690 TATACATTGCTGAATTTGA-TTCGTATATGGA
1 TATACATTGCTGAA-TTGATTTCGTATATGGA
* *
32957721 TATATATTGTTGAATTGATTTCAGTAT-TGGA
1 TATACATTGCTGAATTGATTTC-GTATATGGA
32957752 T
1 T
32957753 GACTGGTTTC
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
30 32 0.30
31 43 0.40
32 33 0.31
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (31 bp):
TATACATTGCTGAATTGATTTCGTATATGGA
Found at i:32957921 original size:43 final size:43
Alignment explanation
Indices: 32957860--32958007 Score: 215
Period size: 43 Copynumber: 3.4 Consensus size: 43
32957850 TTCGAGGTGT
* *
32957860 GATTTCGTGTAAGACCATAGCTGGACTATTGGCATCGATTTGA
1 GATTTCATGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
* *
32957903 GATTTCATGTGAGACCATAGCTGGGTTATTGGCATCGATTTGA
1 GATTTCATGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
* * **
32957946 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCTATACGA
1 GATTTCATGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
32957989 GATTTCCATGTAAGACCAT
1 GATTT-CATGTAAGACCAT
32958008 GTCTGGGACA
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
43 81 0.87
44 12 0.13
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTTCATGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
Found at i:32974987 original size:6 final size:6
Alignment explanation
Indices: 32974978--32975003 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
32974968 TTCACCCTCT
32974978 TCGTCA TCGTCA TCGTCA TCGTCA TC
1 TCGTCA TCGTCA TCGTCA TCGTCA TC
32975004 ATCTTCATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.35
Consensus pattern (6 bp):
TCGTCA
Found at i:32978911 original size:13 final size:12
Alignment explanation
Indices: 32978890--32978927 Score: 58
Period size: 13 Copynumber: 3.0 Consensus size: 12
32978880 TGAAATACTT
32978890 TTTAAAAAAAAA
1 TTTAAAAAAAAA
32978902 TTTGAAAAAAAAA
1 TTT-AAAAAAAAA
32978915 TTTAAAATAAAAA
1 TTTAAAA-AAAAA
32978928 CAATTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 7 0.29
13 17 0.71
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (12 bp):
TTTAAAAAAAAA
Found at i:32979924 original size:9 final size:9
Alignment explanation
Indices: 32979904--32979955 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
32979894 AAAATTATAC
32979904 TTTTTCAATA
1 TTTTT-AATA
*
32979914 ATTTTAATA
1 TTTTTAATA
*
32979923 ATTTTAA-A
1 TTTTTAATA
32979931 TTTTTAA-A
1 TTTTTAATA
*
32979939 TTTTTTATA
1 TTTTTAATA
32979948 TTTTTAAT
1 TTTTTAAT
32979956 TTCTTTAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
8 14 0.38
9 19 0.51
10 4 0.11
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (9 bp):
TTTTTAATA
Found at i:32979989 original size:17 final size:17
Alignment explanation
Indices: 32979913--32979990 Score: 75
Period size: 17 Copynumber: 4.6 Consensus size: 17
32979903 CTTTTTCAAT
**
32979913 AATTTTAATAATTTTAA
1 AATTTTAATTTTTTTAA
* * *
32979930 ATTTTTAAATTTTTTAT
1 AATTTTAATTTTTTTAA
* *
32979947 ATTTTTAATTTCTTTAA
1 AATTTTAATTTTTTTAA
**
32979964 AACATTAATTTTTTTAA
1 AATTTTAATTTTTTTAA
32979981 AATTTTAATT
1 AATTTTAATT
32979991 CAATGTTGTC
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 47 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (17 bp):
AATTTTAATTTTTTTAA
Found at i:32981302 original size:3 final size:3
Alignment explanation
Indices: 32981294--32981336 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
32981284 GATCAAGAAC
32981294 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
32981337 ATCAATCATG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:32981674 original size:35 final size:39
Alignment explanation
Indices: 32981621--32981697 Score: 99
Period size: 37 Copynumber: 2.1 Consensus size: 39
32981611 TGAAACATAG
*
32981621 AAAATATATAAAAGTATGT-GTATATATATAT-TTATAA
1 AAAATATATAAAAATATGTAGTATATATATATATTATAA
*
32981658 AAAAT-TA-AAAAATATGTACGTATATGTATATATTATAA
1 AAAATATATAAAAATATGTA-GTATATATATATATTATAA
32981696 AA
1 AA
32981698 TGTATGTATG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
35 9 0.26
36 2 0.06
37 16 0.46
38 8 0.23
ACGTcount: A:0.53, C:0.01, G:0.08, T:0.38
Consensus pattern (39 bp):
AAAATATATAAAAATATGTAGTATATATATATATTATAA
Found at i:32982274 original size:17 final size:17
Alignment explanation
Indices: 32982252--32982312 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
32982242 ATTACAAAAT
32982252 CATATCTTCTAAGATTG
1 CATATCTTCTAAGATTG
* *
32982269 CATATCAT-AATAGATTG
1 CATATCTTCTA-AGATTG
32982286 CATATATCATATCTAAGATTG
1 C--ATATC-T-TCTAAGATTG
32982307 CATATC
1 CATATC
32982313 CTTGAAGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
16 1 0.03
17 14 0.41
19 10 0.29
21 8 0.24
22 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (17 bp):
CATATCTTCTAAGATTG
Found at i:32982306 original size:21 final size:21
Alignment explanation
Indices: 32982259--32982311 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
32982249 AATCATATCT
32982259 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
*
32982278 -AT-AGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
32982297 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
32982312 CCTTGAAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 7 0.25
18 1 0.04
19 8 0.29
20 1 0.04
21 11 0.39
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:32982312 original size:19 final size:19
Alignment explanation
Indices: 32982259--32982312 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
32982249 AATCATATCT
32982259 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
32982278 -AT-AGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
32982297 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
32982313 CTTGAAGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
17 7 0.24
18 1 0.03
19 13 0.45
20 1 0.03
21 7 0.24
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32983143 original size:44 final size:44
Alignment explanation
Indices: 32983095--32983645 Score: 323
Period size: 44 Copynumber: 12.5 Consensus size: 44
32983085 TTTTGATCTG
* * * ** *
32983095 CTCCACTACTGCTTAGGGATATAAGATCTGTAATTTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* *
32983139 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACTTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* **** * ** *
32983183 CTCCACTGCTGCTCAGGGAGATAAG-GCTAGTGGCTTAAATTTT
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* * ** * *
32983226 CTTTCCTACTAC--CT-TGGGAAGATAAGAT-TCACCGTCTTCAATCTG
1 C--TCC-ACTGCTGCTCAGGG-AGATAAGATCT-ACAATCTTCAACCTA
** * * * ** **
32983271 CTCCACTATTGCTTAGGGAGATAAAATATGTAAT-TTCCTGCCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTT-CAACCTA
**
32983315 CTCCACTATTGCTCAGGGAGATAAGAT-TCACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
32983359 TTCCACTGCTGAC-CAGGGAGATAGGAT-TCACCATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* *
32983403 TTCCACTGCTGAC-CAGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* *
32983447 TTCCACTGCTGAC-CAGGGAGATAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* **
32983491 TTCCACTATTGAC-CAGGGAGATAAGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* *
32983535 TTCCACTGCTGAC-CAGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* * *
32983579 TTCCACTACT-TTCCAGGGAGATAAGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTGCT-CAGGGAGATAAGATC-TACAATCTTCAACCTA
* *
32983623 TTCCACTGCT-TTCCAGGGAGATA
1 CTCCACTGCTGCT-CAGGGAGATA
32983646 GAACTAGTAT
Statistics
Matches: 429, Mismatches: 58, Indels: 40
0.81 0.11 0.08
Matches are distributed among these distances:
42 4 0.01
43 21 0.05
44 378 0.88
45 22 0.05
46 4 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
Found at i:32983160 original size:176 final size:176
Alignment explanation
Indices: 32982977--32983381 Score: 535
Period size: 176 Copynumber: 2.3 Consensus size: 176
32982967 ACCGCAACTT
* ** * *
32982977 AGGGAGATAAAATCTGTAATTTTCAACCTACTCCACTACTACTCAGGGAGATAAAGCTAGTGGCT
1 AGGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAAGCTAGTGGCT
** * **
32983042 TAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTTTCCGTTTTTGATCTGCTCCACTACTGC
66 TAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCAATCTGCTCCACTACTGC
* * * * *
32983107 TTAGGGATATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
131 TTAGGGAGATAAAATATGTAATTTCCAACCTACTCCACTACTGCTC
* * * *
32983153 AGGGAGATAAGGTCTACAATCTTCAACTTACTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCT
1 AGGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAAGCTAGTGGCT
* * * *
32983218 TAAATTTTCTTTCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCAATCTGCTCCACTATTGC
66 TAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCAATCTGCTCCACTACTGC
** *
32983283 TTAGGGAGATAAAATATGTAATTTCCTGCCTACTCCACTATTGCTC
131 TTAGGGAGATAAAATATGTAATTTCCAACCTACTCCACTACTGCTC
*
32983329 AGGGAGATAAGAT-TCACAATCTTCAACCTATTCCACTGCTGAC-CAGGGAGATA
1 AGGGAGATAAGATCT-ACAATCTTCAACCTACTCCACTGCT-ACTCAGGGAGATA
32983382 GGATTCACCA
Statistics
Matches: 197, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
175 1 0.01
176 195 0.99
177 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (176 bp):
AGGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAAGCTAGTGGCT
TAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCAATCTGCTCCACTACTGC
TTAGGGAGATAAAATATGTAATTTCCAACCTACTCCACTACTGCTC
Found at i:32983377 original size:88 final size:87
Alignment explanation
Indices: 32983311--32983646 Score: 491
Period size: 88 Copynumber: 3.8 Consensus size: 87
32983301 TAATTTCCTG
*
32983311 CCTACTCCACTATTG-CTCAGGGAGATAAGA-TTCACAATCTTCAACCTATTCCACTGCTGACCA
1 CCTATTCCACTATTGAC-CAGGGAGATAAGACTT-ACAATCTTCAACCTATTCCACTGCTGACCA
32983374 GGGAGATAGG-ATTCACCATCTTCAA
64 GGGAGATAGGAATTCA--ATCTTCAA
** *
32983399 CCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGG
1 CCTATTCCACTATTGACCAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGG
* *
32983464 GAGATAGGACTCACAATCTTCAA
66 GAGATAGGAAT-TCAATCTTCAA
32983487 CCTATTCCACTATTGACCAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGG
1 CCTATTCCACTATTGACCAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGG
*
32983552 GAGATAGGACTTACAATCTTCAA
66 GAGATAGGAATT-CAATCTTCAA
* **
32983575 CCTATTCCACTACTT-TCCAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTTTCCAG
1 CCTATTCCACTA-TTGACCAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
32983639 GGAGATAG
65 GGAGATAG
32983647 AACTAGTATC
Statistics
Matches: 229, Mismatches: 13, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
88 221 0.97
89 6 0.03
90 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (87 bp):
CCTATTCCACTATTGACCAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGG
GAGATAGGAATTCAATCTTCAA
Found at i:32983381 original size:132 final size:131
Alignment explanation
Indices: 32983311--32983645 Score: 503
Period size: 132 Copynumber: 2.5 Consensus size: 131
32983301 TAATTTCCTG
*
32983311 CCTACTCCACTATTGCTCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGG
1 CCTATTCCACTATTGC-CAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGG
*
32983376 GAGATAGGATTCACCATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTC
65 GAGATAAGATTCACCATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTC
32983441 AA
130 AA
** * * **
32983443 CCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTATTGACCAGG
1 CCTATTCCACTATTG-CCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGG
*
32983508 GAGATAAGACTT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTT
65 GAGATAAGA-TTCACCATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTT
32983572 CAA
129 CAA
* **
32983575 CCTATTCCACTACTTTCCAGGGAGATAAGACTT-ACAATCTTCAACCTATTCCACTGCTTTCCAG
1 CCTATTCCACTA-TTGCCAGGGAGATAAGA-TTCACAATCTTCAACCTATTCCACTGCTGACCAG
32983639 GGAGATA
64 GGAGATA
32983646 GAACTAGTAT
Statistics
Matches: 181, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
132 176 0.97
133 5 0.03
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (131 bp):
CCTATTCCACTATTGCCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGG
AGATAAGATTCACCATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCA
A
Found at i:32986721 original size:9 final size:9
Alignment explanation
Indices: 32986702--32986734 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
32986692 ATGCAAAGCT
32986702 AATGC-ATG
1 AATGCAATG
32986710 AATGCAATG
1 AATGCAATG
*
32986719 AATGCCATG
1 AATGCAATG
32986728 AATGCAA
1 AATGCAA
32986735 AAGAAGAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.21
Consensus pattern (9 bp):
AATGCAATG
Found at i:32995655 original size:111 final size:111
Alignment explanation
Indices: 32995450--32995660 Score: 314
Period size: 111 Copynumber: 1.9 Consensus size: 111
32995440 CTACTCAGTG
32995450 CTGCTCACACAAGCAGTCAGGTATCCGTAACATATGCCGGTATACCCAGCCACTGGTAGAACTTA
1 CTGCTCACACAAGCAGTCAGGTATCCGTAACATATGCCGGTATACCCAGCCACTGGTAGAACTTA
* *
32995515 AGACCAGCACCCGAATTCACATTAATCACAGTTTCGCATCACGGGC
66 AGACCAGCACCCGAATCCACATTAATCACAATTTCGCATCACGGGC
* * * *
32995561 CTGCTCATACAAGCTGTCAGGTATTCGTAACATATGCCGGTATACCTAGCCACTGGTAGAACTTA
1 CTGCTCACACAAGCAGTCAGGTATCCGTAACATATGCCGGTATACCCAGCCACTGGTAGAACTTA
* * * * * *
32995626 TGATCAGCGCTCGAATCCACTTTATTCACAATTTC
66 AGACCAGCACCCGAATCCACATTAATCACAATTTC
32995661 ACATAGATCT
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
111 88 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (111 bp):
CTGCTCACACAAGCAGTCAGGTATCCGTAACATATGCCGGTATACCCAGCCACTGGTAGAACTTA
AGACCAGCACCCGAATCCACATTAATCACAATTTCGCATCACGGGC
Found at i:33001655 original size:151 final size:151
Alignment explanation
Indices: 33001378--33001680 Score: 428
Period size: 151 Copynumber: 2.0 Consensus size: 151
33001368 CTATTCACTT
* * * * ** *
33001378 TCACGGGTCTGCTCATACAAGCTGTCAGTCTTTTGTTACTACTCAGTGCTGCTCACACAAGCTGT
1 TCACGGGCCTGCTCACACAAGCTGACAGTCATCCGTTACTACTCAGTGCTACTCACACAAGCTGT
* ** * * *
33001443 CAGGTATCCGCGGCATATGCCGGTATACCCAGCCACTGGTAGAACTTAAGACTAGCACCCGAATT
66 CAGGTATCCACAACATATACCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAATC
33001508 CACTTTAATCACAGA-TTCACA
131 CACTTTAATCACA-ATTTCACA
*
33001529 TCACGGGCCTGCTCACACAAGCTGACAGTCATCCGTTACTACTCAGTGCTACTCACACAAGTTGT
1 TCACGGGCCTGCTCACACAAGCTGACAGTCATCCGTTACTACTCAGTGCTACTCACACAAGCTGT
* * *
33001594 CAGGTATCTACAACATATACCGGTATACCCAGCCACTGGTAGAACTTATGACCAGCGCCCGAATC
66 CAGGTATCCACAACATATACCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAATC
*
33001659 CACTTTATTCACAATTTCACA
131 CACTTTAATCACAATTTCACA
33001680 T
1 T
33001681 AGATCTCTAA
Statistics
Matches: 133, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
150 1 0.01
151 132 0.99
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (151 bp):
TCACGGGCCTGCTCACACAAGCTGACAGTCATCCGTTACTACTCAGTGCTACTCACACAAGCTGT
CAGGTATCCACAACATATACCGGTATACCCAGCCACTGGTAGAACTTAAGACCAGCACCCGAATC
CACTTTAATCACAATTTCACA
Found at i:33008472 original size:41 final size:42
Alignment explanation
Indices: 33008423--33008531 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
33008413 TCGATGCCTT
*
33008423 TGTCCCAAATAGGGTCTTACACGAATCAT-ATACAG-TGCCAA
1 TGTCCCAAACAGGGTCTTACACGAATC-TCATACAGATGCCAA
* * **
33008464 TGTCCCAAACATGGTCTAACACGTAATCTCATATTGATGCCAA
1 TGTCCCAAACAGGGTCTTACACG-AATCTCATACAGATGCCAA
* *
33008507 TGTCCCAGACAGTGTCTTACACGAA
1 TGTCCCAAACAGGGTCTTACACGAA
33008532 ATCACACCTC
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
41 21 0.38
42 10 0.18
43 25 0.45
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
TGTCCCAAACAGGGTCTTACACGAATCTCATACAGATGCCAA
Found at i:33008529 original size:43 final size:43
Alignment explanation
Indices: 33008393--33008534 Score: 121
Period size: 43 Copynumber: 3.3 Consensus size: 43
33008383 CTCAGATATG
* * * * ** * *
33008393 GTCTTACATGTTATCACATATCGATGCCTTTGTCCCAAATAGG
1 GTCTTACACGTAATCTCATATAGATGCCAATGTCCCAAACAGT
*
33008436 GTCTTACACG-AA--TCATATACAGTGCCAATGTCCCAAACA-T
1 GTCTTACACGTAATCTCATATAGA-TGCCAATGTCCCAAACAGT
* * *
33008476 GGTCTAACACGTAATCTCATATTGATGCCAATGTCCCAGACAGT
1 -GTCTTACACGTAATCTCATATAGATGCCAATGTCCCAAACAGT
*
33008520 GTCTTACACGAAATC
1 GTCTTACACGTAATC
33008535 ACACCTCGAA
Statistics
Matches: 78, Mismatches: 15, Indels: 12
0.74 0.14 0.11
Matches are distributed among these distances:
40 6 0.08
41 23 0.29
42 3 0.04
43 38 0.49
44 8 0.10
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
GTCTTACACGTAATCTCATATAGATGCCAATGTCCCAAACAGT
Found at i:33010903 original size:20 final size:19
Alignment explanation
Indices: 33010866--33010914 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
33010856 AACACAGTTG
**
33010866 CACATCACATGTCACATTAA
1 CACATCACATCACACATT-A
* *
33010886 CACATCACATCACTCATTC
1 CACATCACATCACACATTA
33010905 CACATCACAT
1 CACATCACAT
33010915 AGTCACAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.37, C:0.37, G:0.02, T:0.24
Consensus pattern (19 bp):
CACATCACATCACACATTA
Found at i:33019693 original size:17 final size:17
Alignment explanation
Indices: 33019673--33019734 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
33019663 ATTGCATGAT
33019673 AGATAGTATCATCTGGC
1 AGATAGTATCATCTGGC
33019690 AGATAGTATCA-CTTGGC
1 AGATAGTATCATC-TGGC
*
33019707 -GAATAGTATC-TCCTGGT
1 AG-ATAGTATCAT-CTGGC
*
33019724 GGATAGTATCA
1 AGATAGTATCA
33019735 CCTAGCGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
16 2 0.05
17 34 0.89
18 2 0.05
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (17 bp):
AGATAGTATCATCTGGC
Found at i:33019713 original size:34 final size:34
Alignment explanation
Indices: 33019675--33019745 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
33019665 TGCATGATAG
* *
33019675 ATAGTATCAT-CTGGCAGATAGTATCACTTGGCGA
1 ATAGTATC-TCCTGGCAGATAGTATCACCTAGCGA
**
33019709 ATAGTATCTCCTGGTGGATAGTATCACCTAGCGA
1 ATAGTATCTCCTGGCAGATAGTATCACCTAGCGA
33019743 ATA
1 ATA
33019746 CAATTCACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 1 0.03
34 31 0.97
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (34 bp):
ATAGTATCTCCTGGCAGATAGTATCACCTAGCGA
Found at i:33020536 original size:17 final size:17
Alignment explanation
Indices: 33020480--33020536 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
33020470 AACCACACTA
33020480 TATATGCGAACCTATGC
1 TATATGCGAACCTATGC
* * *
33020497 TATGTGTGAA-CTATGT
1 TATATGCGAACCTATGC
* *
33020513 TGTTATGCGAACCTATAC
1 T-ATATGCGAACCTATGC
33020531 TATATG
1 TATATG
33020537 TGCAAACCCT
Statistics
Matches: 29, Mismatches: 9, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
16 6 0.21
17 18 0.62
18 5 0.17
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (17 bp):
TATATGCGAACCTATGC
Found at i:33032355 original size:24 final size:24
Alignment explanation
Indices: 33032319--33032365 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
33032309 GACACTGACC
*
33032319 TTTTCATTGATATCTTTTTCAACA
1 TTTTCATTGATATCCTTTTCAACA
*
33032343 TTTTCATTTATATCCTTTTCAAC
1 TTTTCATTGATATCCTTTTCAAC
33032366 CTTCTTCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTTCATTGATATCCTTTTCAACA
Found at i:33032527 original size:40 final size:40
Alignment explanation
Indices: 33032472--33032557 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 40
33032462 GCGCTAGATG
**
33032472 GATAAACCGACGATATCAAATGTGTGCCCAGCACTAGTCA
1 GATAAACCGACGATATCAAATGTGTGCCCAAAACTAGTCA
* * *
33032512 GATAAACTGACGATATCAAATGTGTTCCCAAAACTAGTCC
1 GATAAACCGACGATATCAAATGTGTGCCCAAAACTAGTCA
33032552 GATAAA
1 GATAAA
33032558 TCAACAATGT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (40 bp):
GATAAACCGACGATATCAAATGTGTGCCCAAAACTAGTCA
Done.