Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 107 of 211
Found at i:33434990 original size:19 final size:20
Alignment explanation
Indices: 33434966--33435010 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
33434956 TAAACTAAAC
*
33434966 TAAGATTAAACTA-ATTATT
1 TAAGATTAAACTATATTAAT
33434985 TAAGATTAAACTATATTAAT
1 TAAGATTAAACTATATTAAT
33435005 TAAGAT
1 TAAGAT
33435011 ATAGATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (20 bp):
TAAGATTAAACTATATTAAT
Found at i:33435797 original size:22 final size:20
Alignment explanation
Indices: 33435756--33435797 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
33435746 CCATTGTTAA
*
33435756 GAAATTGATGAATTAGACTT
1 GAAATTGATGAATTAAACTT
33435776 GAAATTGATAGAAATTAAACTT
1 GAAATTGAT-G-AATTAAACTT
33435798 AGATAATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 1 0.05
22 9 0.47
ACGTcount: A:0.45, C:0.05, G:0.17, T:0.33
Consensus pattern (20 bp):
GAAATTGATGAATTAAACTT
Found at i:33450860 original size:22 final size:22
Alignment explanation
Indices: 33450835--33450876 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
33450825 AAACATTCAA
*
33450835 TTATATTGGCACAATCAATCAT
1 TTATATTGGCACAATAAATCAT
*
33450857 TTATATTGGCATAATAAATC
1 TTATATTGGCACAATAAATC
33450877 CTTCGAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (22 bp):
TTATATTGGCACAATAAATCAT
Found at i:33464074 original size:136 final size:136
Alignment explanation
Indices: 33463829--33464076 Score: 320
Period size: 136 Copynumber: 1.8 Consensus size: 136
33463819 TATTCACATG
* * *
33463829 AGCTATCGGTCGGAACGTAGCTACACGATGCTGCTCCACAAGCTGTCGAGTATCCAAAAGAAACG
1 AGCTATCGGTCAGAACGTAGCTACACGATGCTGCTCCACAAGCTATCGAGTATCCAAAACAAACG
* * * * *
33463894 TTGAAACTCGGCCATTGGTAGGACATTCAAGACCAGCACTCGAAACATGATAACCTGGGTCTGCT
66 TAGAAACTCAGCCACTAGTAGGACATTCAAGACCAGCACCCGAAACATGATAACCTGGGTCTGCT
33463959 CACACA
131 CACACA
* * * * ** *
33463965 AGCTGTCGGTCAGAACGTAGCTACATGGTGCTGCTCCTCAAGCTATCGAGTATCCGTAACAAATG
1 AGCTATCGGTCAGAACGTAGCTACACGATGCTGCTCCACAAGCTATCGAGTATCCAAAACAAACG
*
33464030 TCAG-AACTCAGCCACTAGTAGGACATTCAAGGA-CATCACCCGAAACA
66 T-AGAAACTCAGCCACTAGTAGGACATTCAA-GACCAGCACCCGAAACA
33464077 CGGTAAACCA
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
136 91 0.97
137 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (136 bp):
AGCTATCGGTCAGAACGTAGCTACACGATGCTGCTCCACAAGCTATCGAGTATCCAAAACAAACG
TAGAAACTCAGCCACTAGTAGGACATTCAAGACCAGCACCCGAAACATGATAACCTGGGTCTGCT
CACACA
Found at i:33467057 original size:8 final size:8
Alignment explanation
Indices: 33467044--33467068 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
33467034 ATTTGATTCA
33467044 TATTTGAT
1 TATTTGAT
33467052 TATTTGAT
1 TATTTGAT
33467060 TATTTGAT
1 TATTTGAT
33467068 T
1 T
33467069 TCTTGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (8 bp):
TATTTGAT
Found at i:33485469 original size:50 final size:50
Alignment explanation
Indices: 33485367--33485559 Score: 197
Period size: 50 Copynumber: 3.7 Consensus size: 50
33485357 GGGAATGAGA
**
33485367 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA-G--ATGAGAGG
* *
33485423 TTCCATGTCAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * **
33485473 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * *
33485523 TCTCATGTAAGACTATATCTAGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
33485560 GTACAGGAAA
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 79 0.68
52 1 0.01
53 3 0.03
56 34 0.29
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:33485836 original size:20 final size:20
Alignment explanation
Indices: 33485811--33485859 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
33485801 TGAGTTATTT
33485811 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
* *
33485831 AAGTAA-TAGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
33485851 AAG-AAGCAA
1 AAGTAAGCAA
33485860 AGACCATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.57, C:0.06, G:0.22, T:0.14
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:33487074 original size:19 final size:21
Alignment explanation
Indices: 33487042--33487084 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
33487032 GTTACAATTA
33487042 ATTTTTCTAAAAATATT-TTT
1 ATTTTTCTAAAAATATTATTT
*
33487062 ATTTTTCT-GAAATATTATTT
1 ATTTTTCTAAAAATATTATTT
33487082 ATT
1 ATT
33487085 GATTTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTTTTCTAAAAATATTATTT
Found at i:33490818 original size:19 final size:20
Alignment explanation
Indices: 33490784--33490823 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
33490774 ATTATTTGGA
33490784 TTTTTCATAAAAAATGTTTC
1 TTTTTCATAAAAAATGTTTC
*
33490804 TTTTTCA-AAATAATGTTTC
1 TTTTTCATAAAAAATGTTTC
33490823 T
1 T
33490824 AAATAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTTTCATAAAAAATGTTTC
Found at i:33493734 original size:20 final size:21
Alignment explanation
Indices: 33493706--33493745 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
33493696 ACTACATTAG
*
33493706 ACAATTAAATAAAT-TAATAC
1 ACAAATAAATAAATCTAATAC
33493726 ACAAATAAATAAATCTAATA
1 ACAAATAAATAAATCTAATA
33493746 TGTACAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (21 bp):
ACAAATAAATAAATCTAATAC
Found at i:33496097 original size:146 final size:148
Alignment explanation
Indices: 33495808--33496251 Score: 460
Period size: 146 Copynumber: 2.9 Consensus size: 148
33495798 TCTTTTAAAA
* * * * * *
33495808 AAATCATTACTTTTCTTAAAAATCAAATCTTTATTTTGAAATAGTTGAAAAAGATCAAAACTTTG
1 AAATCACTAATTTTCTTAAAGATCAAAACTTTATTTCGAAATAGTTGAAAAAAATCAAAACTTTG
*
33495873 TTTTAAAATTTTAAACTTTCCCTTTAAAATGACTAAAAAAACATATTTTTATTTTTAAAAATCTA
66 TTTTAAAA-TTTAAA-TTTTCCTTTAAAATGACT-AAAAAAC--ATTTTTATTTTTAAAAATCTA
33495938 AAC-TT-TC---TGTTTT-TTTT
126 AACTTTCTCTTTTGTTTTCTTTT
* * *
33495955 -AATCACTAATTTTCTTAAAGATCAAAGCTTTATTTCAAAATAGTTGAAAAAAATCAAAAATTTG
1 AAATCACTAATTTTCTTAAAGATCAAAACTTTATTTCGAAATAGTTGAAAAAAATCAAAACTTTG
*
33496019 TTTTAAAATTTAAATTTTTCTTTAAAATGAC-AAAAAA-ATTTGTTATTTTTAAAAATCTAAACT
66 TTTTAAAATTTAAATTTTCCTTTAAAATGACTAAAAAACATTT-TTATTTTTAAAAATCTAAACT
*
33496082 TTCTCTTTTTTTTTTTCTTTT
130 TTCTC--TTTTGTTTTCTTTT
*
33496103 AAAAAAAAT-ACTATTTTTCTTAAAGATCAAAACTTTTATTTCGAAATAGTTGACAAAAAAATCA
1 -----AAATCACTAATTTTCTTAAAGATCAAAAC-TTTATTTCGAAATAGTTG--AAAAAAATCA
* * * *
33496167 AAACTTTGTTTTTAAATTTTAAACTTTCCTTTAAAATGGCTTAAAAAATAGATTTTT-TTTTTAA
58 AAACTTTG-TTTTAAAATTTAAATTTTCCTTTAAAATGAC-T-AAAAA-ACATTTTTATTTTTAA
*
33496231 AAATTTAAACTTTCTCCTTTT
119 AAATCTAAACTTTCT-CTTTT
33496252 AAAAAAAACC
Statistics
Matches: 252, Mismatches: 20, Indels: 38
0.81 0.06 0.12
Matches are distributed among these distances:
139 4 0.02
140 20 0.08
141 2 0.01
142 8 0.03
144 15 0.06
145 6 0.02
146 64 0.25
147 5 0.02
148 4 0.02
153 22 0.09
154 20 0.08
156 17 0.07
157 27 0.11
159 4 0.02
160 26 0.10
161 4 0.02
162 4 0.02
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (148 bp):
AAATCACTAATTTTCTTAAAGATCAAAACTTTATTTCGAAATAGTTGAAAAAAATCAAAACTTTG
TTTTAAAATTTAAATTTTCCTTTAAAATGACTAAAAAACATTTTTATTTTTAAAAATCTAAACTT
TCTCTTTTGTTTTCTTTT
Found at i:33517608 original size:26 final size:26
Alignment explanation
Indices: 33517560--33517613 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
33517550 ACATAAGGTC
*
33517560 ATAACAGTCATTTATCTCCTGGGGGT
1 ATAACAGTCATTTATCTCATGGGGGT
*
33517586 ATAACAGTCATTT-TCCTTATGGGGGT
1 ATAACAGTCATTTAT-CTCATGGGGGT
33517612 AT
1 AT
33517614 TTCGATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37
Consensus pattern (26 bp):
ATAACAGTCATTTATCTCATGGGGGT
Found at i:33517642 original size:27 final size:27
Alignment explanation
Indices: 33517593--33517875 Score: 328
Period size: 27 Copynumber: 10.5 Consensus size: 27
33517583 GGTATAACAG
* *
33517593 TCATTTT-CCTTATGGGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
** * *
33517619 TCATTTTACCCTATAAAGGTATTTTGG
1 TCATTTTACCCTATAGGGGTATTTCGA
*
33517646 TCATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGA
*
33517673 TCATTTTACCCTATAGGGGTA-TTCCA
1 TCATTTTACCCTATAGGGGTATTTCGA
*
33517699 GTCATTTTACCCTATAGGGGTACTTCGA
1 -TCATTTTACCCTATAGGGGTATTTCGA
* *
33517727 TCATTTTATCCTATGGGGGTATTTC-A
1 TCATTTTACCCTATAGGGGTATTTCGA
* *
33517753 CTCATTTTACCCTAT-GAGAGTATTTCGG
1 -TCATTTTACCCTATAG-GGGTATTTCGA
*
33517781 TCATTTTACCCTAT-GAGGGTATTTCGG
1 TCATTTTACCCTATAG-GGGTATTTCGA
33517808 TCATTTTACCCTAT-GAGGGTATTTCTG-
1 TCATTTTACCCTATAG-GGGTATTTC-GA
*
33517835 TCATTTTATCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGA
33517862 TCATTTTACCCTAT
1 TCATTTTACCCTAT
33517876 TTTGAGGTCT
Statistics
Matches: 227, Mismatches: 21, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
26 13 0.06
27 208 0.92
28 6 0.03
ACGTcount: A:0.20, C:0.19, G:0.18, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGA
Found at i:33517711 original size:81 final size:80
Alignment explanation
Indices: 33517581--33517875 Score: 362
Period size: 81 Copynumber: 3.7 Consensus size: 80
33517571 TTATCTCCTG
** * * * *
33517581 GGGGTATAACAGTCATTTT-CCTTATGGGGGTATTTCGATCATTTTACCCTATAAAGGTATTTTG
1 GGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCG
33517645 GTCATTTTACCCTAT
66 GTCATTTTACCCTAT
* * * *
33517660 AGGGGTATTTCGGTCATTTTACCCTATAGGGGTA-TTCCAGTCATTTTACCCTATAGGGGTACTT
1 -GGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGA-TCATTTTACCCTATAAGGGTATTT
* *
33517724 CGATCATTTTATCCTAT
64 CGGTCATTTTACCCTAT
* * * *
33517741 GGGGGTATTTCACTCATTTTACCCTAT-GAGAGTATTTCGGTCATTTTACCCTATGAGGGTATTT
1 -GGGGTATTTCAGTCATTTTACCCTATAG-GGGTATTTCGATCATTTTACCCTATAAGGGTATTT
33517805 CGGTCATTTTACCCTAT
64 CGGTCATTTTACCCTAT
* *
33517822 GAGGGTATTTCTGTCATTTTATCCTATAGGGGTATTTCGATCATTTTACCCTAT
1 G-GGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTAT
33517876 TTTGAGGTCT
Statistics
Matches: 181, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
80 22 0.12
81 155 0.86
82 4 0.02
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.41
Consensus pattern (80 bp):
GGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCG
GTCATTTTACCCTAT
Found at i:33536805 original size:27 final size:27
Alignment explanation
Indices: 33536767--33537067 Score: 383
Period size: 27 Copynumber: 11.1 Consensus size: 27
33536757 ATTTATGAGT
* *
33536767 AAATTACCGAAATATCCTCGAAGGGTA
1 AAATTACTGAAATACCCTCGAAGGGTA
*
33536794 AAATTACTGAAATACCCTCAAAGGGTA
1 AAATTACTGAAATACCCTCGAAGGGTA
*
33536821 AAATTACCGAAATACCCTCGAAGGGTA
1 AAATTACTGAAATACCCTCGAAGGGTA
33536848 AAATTA-TCGAAATACCCTCGAAGGGTA
1 AAATTACT-GAAATACCCTCGAAGGGTA
* *
33536875 AAATTACTCAAATACCCTTGAAGGGTA
1 AAATTACTGAAATACCCTCGAAGGGTA
*
33536902 AAATTA-TCGAAATACCCTTGAAGGGTA
1 AAATTACT-GAAATACCCTCGAAGGGTA
* *
33536929 AAATTATTGAAATATCCTCGAAGGGTA
1 AAATTACTGAAATACCCTCGAAGGGTA
* *
33536956 AAATGATTGAAATACCCTCGAAGGGTA
1 AAATTACTGAAATACCCTCGAAGGGTA
* * * * *
33536983 AAATGACTGAAATACCTTTGAAAGTTA
1 AAATTACTGAAATACCCTCGAAGGGTA
* *
33537010 AAATGACTAAAATACCCTCGAAGGGTA
1 AAATTACTGAAATACCCTCGAAGGGTA
*
33537037 AAATGACTGAAATA-CCTCCGAAGGGTA
1 AAATTACTGAAATACCCT-CGAAGGGTA
33537064 AAAT
1 AAAT
33537068 GATAGAAATA
Statistics
Matches: 245, Mismatches: 24, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
26 4 0.02
27 239 0.98
28 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGAAGGGTA
Found at i:33537310 original size:26 final size:26
Alignment explanation
Indices: 33537270--33537369 Score: 121
Period size: 26 Copynumber: 3.8 Consensus size: 26
33537260 TTGCCACAAA
* *
33537270 TACTGTTACTAGCAGCTTTGCTGCGT
1 TACTATTACTGGCAGCTTTGCTGCGT
* * *
33537296 TACTAATT-CTGGCAGCTCTACTGTGT
1 TACT-ATTACTGGCAGCTTTGCTGCGT
*
33537322 TACTGTTACTGGCAGCTTTGCTGCGT
1 TACTATTACTGGCAGCTTTGCTGCGT
*
33537348 TATTATTACTGGCAGCTTTGCT
1 TACTATTACTGGCAGCTTTGCT
33537370 ACGATATTGG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
25 2 0.03
26 57 0.93
27 2 0.03
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGCTGCGT
Found at i:33537377 original size:26 final size:26
Alignment explanation
Indices: 33537327--33537377 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33537317 TGTGTTACTG
* *
33537327 TTACTGGCAGCTTTGCTGCGTTATTA
1 TTACTGGCAGCTTTGCTACGATATTA
33537353 TTACTGGCAGCTTTGCTACGATATT
1 TTACTGGCAGCTTTGCTACGATATT
33537378 GGTGTGTTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.41
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTACGATATTA
Found at i:33537537 original size:30 final size:28
Alignment explanation
Indices: 33537476--33537585 Score: 130
Period size: 30 Copynumber: 3.8 Consensus size: 28
33537466 TTGTACTGAA
*
33537476 TACTGTTTTGGGCTAAGGCCCACACTAT
1 TACTGTATTGGGCTAAGGCCCACACTAT
*
33537504 TACTGTATTGGGCTAAGGCCTACACTTTAT
1 TACTGTATTGGGCTAAGGCCCACAC--TAT
* *
33537534 TACTGTATTGGGCTATGGCCCACACACTAC
1 TACTGTATTGGGCTAAGG-CC-CACACTAT
* *
33537564 TACTGTATAGGGCTCAGGCCCA
1 TACTGTATTGGGCTAAGGCCCA
33537586 GACTGATTCT
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
28 25 0.36
29 2 0.03
30 37 0.53
31 2 0.03
32 4 0.06
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACACTAT
Found at i:33539597 original size:27 final size:26
Alignment explanation
Indices: 33539556--33539802 Score: 199
Period size: 27 Copynumber: 9.2 Consensus size: 26
33539546 ATTCATGAGG
* *
33539556 AAATTACCGAGATACCCTCAAAGGGTA
1 AAATTA-CGAAATACCCTCGAAGGGTA
* *
33539583 AAATTATCGAAATACCCTTGAAGGGTT
1 AAATTA-CGAAATACCCTCGAAGGGTA
* *
33539610 AAATTATTGAAATACCCACGAAGGGTA
1 AAATTA-CGAAATACCCTCGAAGGGTA
* *
33539637 AAATTACCAAAATACCCTCGAAGGGAA
1 AAATTA-CGAAATACCCTCGAAGGGTA
**
33539664 AAATTACTGAAATACTTTCGAAGGGTA
1 AAATTAC-GAAATACCCTCGAAGGGTA
* * *
33539691 AAATTACTAAAATACCCTCAAAAGGTA
1 AAATTAC-GAAATACCCTCGAAGGGTA
* *
33539718 CAATGATCGAAATACCCTCGAAGGGTA
1 AAATTA-CGAAATACCCTCGAAGGGTA
* * * *
33539745 AAATGACTAAAATACCCCCAAAGGGTA
1 AAATTAC-GAAATACCCTCGAAGGGTA
* * *
33539772 AAATGACCAAAATACCC-CTATAGGGTA
1 AAATTA-CGAAATACCCTCGA-AGGGTA
33539799 AAAT
1 AAAT
33539803 GACTGTTATA
Statistics
Matches: 182, Mismatches: 33, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.02
27 176 0.97
28 2 0.01
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (26 bp):
AAATTACGAAATACCCTCGAAGGGTA
Found at i:33539695 original size:81 final size:80
Alignment explanation
Indices: 33539556--33539788 Score: 234
Period size: 81 Copynumber: 2.9 Consensus size: 80
33539546 ATTCATGAGG
* * * * *
33539556 AAATTACCGAGATACCCTCAAAGGGTAAAATTA-TCGAAATACCCTTGAAGGGTTAAATTATTGA
1 AAATTACCGAAATACCCTCGAAGGGTAAAATTACT-GAAATA-CCTTGAAGGGTAAAATTACTAA
* *
33539620 AATACCCACGAAGGGTA
64 AATACCCACAAAAGGTA
* * *
33539637 AAATTACCAAAATACCCTCGAAGGGAAAAATTACTGAAATACTTTCGAAGGGTAAAATTACTAAA
1 AAATTACCGAAATACCCTCGAAGGGTAAAATTACTGAAATACCTT-GAAGGGTAAAATTACTAAA
*
33539702 ATACCCTCAAAAGGTA
65 ATACCCACAAAAGGTA
* * * * * *** * *
33539718 CAATGATCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCCCAAAGGGTAAAATGACCAAA
1 AAATTACCGAAATACCCTCGAAGGGTAAAATTACTGAAATA-CCTTGAAGGGTAAAATTACTAAA
33539783 ATACCC
65 ATACCC
33539789 CTATAGGGTA
Statistics
Matches: 125, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 3 0.02
81 120 0.96
82 2 0.02
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (80 bp):
AAATTACCGAAATACCCTCGAAGGGTAAAATTACTGAAATACCTTGAAGGGTAAAATTACTAAAA
TACCCACAAAAGGTA
Found at i:33539777 original size:54 final size:54
Alignment explanation
Indices: 33539567--33539802 Score: 235
Period size: 54 Copynumber: 4.4 Consensus size: 54
33539557 AATTACCGAG
* * ** * * *
33539567 ATACCCTCAAAGGGTAAAATTA-TCGAAATACCCTTGAAGGGTTAAATTATTGAA
1 ATACCCTCGAAGGGTAAAATTACT-AAAATACCCTCAAAGGGTAAAATGATCGAA
* * * * *
33539621 ATACCCACGAAGGGTAAAATTACCAAAATACCCTCGAAGGGAAAAATTA-CTGAA
1 ATACCCTCGAAGGGTAAAATTACTAAAATACCCTCAAAGGGTAAAATGATC-GAA
** * *
33539675 ATACTTTCGAAGGGTAAAATTACTAAAATACCCTCAAAAGGTACAATGATCGAA
1 ATACCCTCGAAGGGTAAAATTACTAAAATACCCTCAAAGGGTAAAATGATCGAA
* * * *
33539729 ATACCCTCGAAGGGTAAAATGACTAAAATACCCCCAAAGGGTAAAATGACCAAA
1 ATACCCTCGAAGGGTAAAATTACTAAAATACCCTCAAAGGGTAAAATGATCGAA
*
33539783 ATACCC-CTATAGGGTAAAAT
1 ATACCCTCGA-AGGGTAAAAT
33539803 GACTGTTATA
Statistics
Matches: 152, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
53 2 0.01
54 149 0.98
55 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (54 bp):
ATACCCTCGAAGGGTAAAATTACTAAAATACCCTCAAAGGGTAAAATGATCGAA
Found at i:33540036 original size:26 final size:26
Alignment explanation
Indices: 33539975--33540064 Score: 92
Period size: 26 Copynumber: 3.5 Consensus size: 26
33539965 CTGTTATTGG
* * **
33539975 CAGCTTTGCTACGTTACTGATT-CTGG
1 CAGCTTTGCTGCGTTA-TTATTACTAA
*
33540001 CAGCTCTGCTGCGTTATTATTACTAA
1 CAGCTTTGCTGCGTTATTATTACTAA
* * *
33540027 CAGTTTTGCTGTGTTATTATTACTAG
1 CAGCTTTGCTGCGTTATTATTACTAA
33540053 CAGCTTTGCTGC
1 CAGCTTTGCTGC
33540065 TATATTGGTG
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
25 4 0.08
26 48 0.92
ACGTcount: A:0.18, C:0.21, G:0.20, T:0.41
Consensus pattern (26 bp):
CAGCTTTGCTGCGTTATTATTACTAA
Found at i:33540239 original size:30 final size:29
Alignment explanation
Indices: 33540185--33540287 Score: 145
Period size: 30 Copynumber: 3.5 Consensus size: 29
33540175 TATTATTGTT
33540185 TTGGGCTAAGGCCCACA-TTGTTACTGTA
1 TTGGGCTAAGGCCCACACTTGTTACTGTA
33540213 TTGGGCTAAGGCCCACACTCTGTTACTGTA
1 TTGGGCTAAGGCCCACACT-TGTTACTGTA
* *
33540243 TTGGGCTATGGCCCACACATTGCTACTGTA
1 TTGGGCTAAGGCCCACAC-TTGTTACTGTA
* *
33540273 TAGGGCTCAGGCCCA
1 TTGGGCTAAGGCCCA
33540288 GACTGATGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 17 0.25
29 1 0.01
30 48 0.72
31 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.25, T:0.28
Consensus pattern (29 bp):
TTGGGCTAAGGCCCACACTTGTTACTGTA
Found at i:33540861 original size:39 final size:39
Alignment explanation
Indices: 33540818--33540895 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
33540808 AAGATTTTTT
* *
33540818 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTATGATATATGCTTAAATGTTAGGTGATTATA
* * *
33540857 TGAGTATTATGATATATGCTTGAGTGTTCGGTGATTATA
1 TGAGTATTATGATATATGCTTAAATGTTAGGTGATTATA
33540896 CATGTAAGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.28, C:0.04, G:0.23, T:0.45
Consensus pattern (39 bp):
TGAGTATTATGATATATGCTTAAATGTTAGGTGATTATA
Found at i:33543764 original size:12 final size:12
Alignment explanation
Indices: 33543747--33543778 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
33543737 GCTTGAATTA
33543747 AATTAATTATAG
1 AATTAATTATAG
33543759 AATTAATTATAG
1 AATTAATTATAG
33543771 AATTAATT
1 AATTAATT
33543779 TAATTCGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (12 bp):
AATTAATTATAG
Found at i:33548835 original size:43 final size:42
Alignment explanation
Indices: 33548788--33548884 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
33548778 CCAAACGTGA
* * *
33548788 TCTTACATGTAATCAAATAACGATGCCACTGTCCTAGACAAGG
1 TCTTACATGTAATCAAAT-ACGACGCCAATGTCCCAGACAAGG
* * * *
33548831 TCTTACACGTAATCATATATGACGCCAATGTCCCAGACATGG
1 TCTTACATGTAATCAAATACGACGCCAATGTCCCAGACAAGG
33548873 TCTTACATGTAA
1 TCTTACATGTAA
33548885 ATCTTAAACC
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
42 30 0.65
43 16 0.35
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (42 bp):
TCTTACATGTAATCAAATACGACGCCAATGTCCCAGACAAGG
Found at i:33549991 original size:13 final size:13
Alignment explanation
Indices: 33549973--33549997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33549963 ACAAACGATA
33549973 AAATTTTCACACG
1 AAATTTTCACACG
33549986 AAATTTTCACAC
1 AAATTTTCACAC
33549998 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:33552680 original size:19 final size:19
Alignment explanation
Indices: 33552656--33552734 Score: 61
Period size: 20 Copynumber: 4.1 Consensus size: 19
33552646 GTGTCTCTGT
33552656 TTACACTTCGATGCCTCTA
1 TTACACTTCGATGCCTCTA
* * *
33552675 TTACACTTTGGTGTCTCTA
1 TTACACTTCGATGCCTCTA
* * *
33552694 CTTGCAGTTCGATGCTTCTTA
1 -TTACACTTCGATGCCTC-TA
*
33552715 TTACACAATCG-TGCCTCTA
1 TTACAC-TTCGATGCCTCTA
33552734 T
1 T
33552735 CTTTACTTTG
Statistics
Matches: 44, Mismatches: 13, Indels: 6
0.70 0.21 0.10
Matches are distributed among these distances:
19 19 0.43
20 20 0.45
21 5 0.11
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.41
Consensus pattern (19 bp):
TTACACTTCGATGCCTCTA
Found at i:33555487 original size:25 final size:25
Alignment explanation
Indices: 33555459--33555515 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
33555449 AGCTCCTCTA
* * *
33555459 AGCTTAATAACGGTAAGCTCATGCG
1 AGCTGAATAACGATAAGCTCATACG
* *
33555484 AGCTGAGTATCGATAAGCTCATACG
1 AGCTGAATAACGATAAGCTCATACG
33555509 AGCTGAA
1 AGCTGAA
33555516 ATCGGTAACC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (25 bp):
AGCTGAATAACGATAAGCTCATACG
Found at i:33557278 original size:18 final size:17
Alignment explanation
Indices: 33557236--33557278 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
33557226 CGTGTAACCC
33557236 CTATTTTTGAAAATTTT
1 CTATTTTTGAAAATTTT
* *
33557253 CATGTTTTTCTAAAATTTT
1 C-TATTTTT-GAAAATTTT
33557272 CTATTTT
1 CTATTTT
33557279 ATTTTGATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.05
18 11 0.52
19 9 0.43
ACGTcount: A:0.26, C:0.09, G:0.05, T:0.60
Consensus pattern (17 bp):
CTATTTTTGAAAATTTT
Found at i:33557402 original size:25 final size:25
Alignment explanation
Indices: 33557374--33557423 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
33557364 AAATTGATTC
* *
33557374 GTTTATATAT-TTTTGTAATTTAGTT
1 GTTTATAT-TGTTTTGAAATTAAGTT
33557399 GTTTATATTGTTTTGAAATTAAGTT
1 GTTTATATTGTTTTGAAATTAAGTT
33557424 AAATGTTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (25 bp):
GTTTATATTGTTTTGAAATTAAGTT
Found at i:33559499 original size:16 final size:16
Alignment explanation
Indices: 33559478--33559509 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33559468 TAATTTGTTG
*
33559478 ATTTTTAGTTTAATTA
1 ATTTTTAGGTTAATTA
33559494 ATTTTTAGGTTAATTA
1 ATTTTTAGGTTAATTA
33559510 GATTATTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (16 bp):
ATTTTTAGGTTAATTA
Found at i:33570863 original size:36 final size:36
Alignment explanation
Indices: 33570816--33570887 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
33570806 TTTTGCGAGG
33570816 CATGATTAACCTAAACATAAGATGGAAACAAATATT
1 CATGATTAACCTAAACATAAGATGGAAACAAATATT
*
33570852 CATGATTAACCTGAACATAAGATGGAAACAAATATT
1 CATGATTAACCTAAACATAAGATGGAAACAAATATT
33570888 TTCTCAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (36 bp):
CATGATTAACCTAAACATAAGATGGAAACAAATATT
Found at i:33570939 original size:25 final size:25
Alignment explanation
Indices: 33570910--33570969 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
33570900 TTAATTAGTA
*
33570910 TAAAATATTAATAATTCAAT-AAAT
1 TAAAATATTAATAATTAAATAAAAT
33570934 TGAAAA-ATTAAATAATTAAATAAAAT
1 T-AAAATATT-AATAATTAAATAAAAT
33570960 TAAAAT-TTAA
1 TAAAATATTAA
33570970 GAGAAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
24 6 0.19
25 20 0.65
26 5 0.16
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
TAAAATATTAATAATTAAATAAAAT
Found at i:33570976 original size:18 final size:18
Alignment explanation
Indices: 33570937--33570978 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
33570927 AATAAATTGA
*
33570937 AAAATTAAATAATTAAAT
1 AAAATTAAATAATTAAAG
*
33570955 AAAATTAAA-ATTTAAGAG
1 AAAATTAAATAATTAA-AG
33570973 AAAATT
1 AAAATT
33570979 TGTCTTACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (18 bp):
AAAATTAAATAATTAAAG
Found at i:33581752 original size:50 final size:50
Alignment explanation
Indices: 33581649--33582037 Score: 444
Period size: 50 Copynumber: 7.7 Consensus size: 50
33581639 AATGAGATCC
*
33581649 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAGA-TA--AGAGGTCT
* * *
33581705 CATGTAAGACCATGTTTGGGACATGACATTGGCACCGAGATAAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCT
* *
33581755 CATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATAAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCT
33581805 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCT
* * *
33581855 CATGTAAGACCATGTCTAGGACATGGCATTAGCACCGAGATGAGAGGTC-
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCT
* * * * * ** *
33581904 CCTCGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAACTCC
1 CAT-GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCT
* * * * * * *
33581955 CATGTAAGACCATATATGGGATATGGCATTGGCAGTACAAGA-AACA--TCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCGAGATAAGAGGTCT
*
33582004 CATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
33582038 TGTTATTATC
Statistics
Matches: 292, Mismatches: 37, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
49 35 0.12
50 212 0.73
51 4 0.01
52 4 0.01
53 4 0.01
55 1 0.00
56 32 0.11
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCT
Found at i:33591439 original size:3 final size:3
Alignment explanation
Indices: 33591431--33591459 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
33591421 GGAGAGACCG
33591431 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
33591460 GGAATCGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:33605301 original size:50 final size:50
Alignment explanation
Indices: 33605208--33605394 Score: 151
Period size: 50 Copynumber: 3.6 Consensus size: 50
33605198 TTTCCTGTAC
* * * * ** ** *
33605208 TGCCAATGCCATATCCCATATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATATCAG
* * * * *
33605258 TGCCCATGCCATGTCCTAGACATGGTCTTACGGG-GAACCTCTCATCTTAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACGGGAG-ACCTCTCATATCAG
* *
33605308 TGCCAACGCCATGTCCCAGACATGGTCTTACGTGAGACCTCTCATAACCTCAATAA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACGGGAGACCTCTCAT-A--TC---AG
*
33605364 TGCCAATGCCATGTCCCAGACATGGTCTTAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTAC
33605395 ATGGGATCTC
Statistics
Matches: 109, Mismatches: 20, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
49 1 0.01
50 75 0.69
51 1 0.01
53 1 0.01
56 31 0.28
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATATCAG
Found at i:33605369 original size:56 final size:50
Alignment explanation
Indices: 33605265--33605394 Score: 154
Period size: 50 Copynumber: 2.5 Consensus size: 50
33605255 CGGTGCCCAT
* * *
33605265 GCCATGTCCTAGACATGGTCTTACGGGGAACCTCTCATCTTAGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACGGAGAACCTCTCATCTTAATGCCAAC
*
33605315 GCCATGTCCCAGACATGGTCTTACGTGAG-ACCTCTCATAACCTCAATAATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACG-GAGAACCTCTCAT---CT---TAATGCCAAC
33605371 GCCATGTCCCAGACATGGTCTTAC
1 GCCATGTCCCAGACATGGTCTTAC
33605395 ATGGGATCTC
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
50 33 0.48
51 2 0.03
53 2 0.03
56 32 0.46
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACGGAGAACCTCTCATCTTAATGCCAAC
Found at i:33613174 original size:51 final size:51
Alignment explanation
Indices: 33613093--33613442 Score: 305
Period size: 51 Copynumber: 6.9 Consensus size: 51
33613083 TAAGGTATCG
* * *
33613093 ATGAACACGTGTGTAGTATTGTGTGAAGGCTACTACGTGTATCGATAAATA
1 ATGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA
* * *
33613144 ATGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATTGATAAATA
1 ATGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA
* * * * * * * *
33613195 ATGGTCACATGTGTAGTACTAAGTGAAAGCTACTATGTGTACCGAGAAGT-
1 ATGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA
* * * * *
33613245 TTTAGTCACGTGTGTAGTACTGTGTGAAGGCTACAACGTGTATCGATAAATG
1 ATGA-TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA
* * * * ** * *
33613297 ACGACCACATGTGTAGTACTAAGTGAAGGCTACTATATGTACCTA-AAAGCT-
1 ATGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA--TA
* * * * * *
33613348 TTGATCACGTGTGTAGTACTATGTGAAGGATATTACATG-AACCATAAA-A
1 ATGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA
* * *
33613397 CTTGATCACGTGTGTAATACTATGCGAAGGCTACTACGTGTATCGA
1 -ATGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
33613443 ATGATAAAAG
Statistics
Matches: 237, Mismatches: 54, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
50 41 0.17
51 194 0.82
52 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (51 bp):
ATGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA
Found at i:33613418 original size:50 final size:51
Alignment explanation
Indices: 33613306--33613433 Score: 161
Period size: 50 Copynumber: 2.5 Consensus size: 51
33613296 GACGACCACA
* * * *
33613306 TGTGTAGTACTAAGTGAAGGCTACTATATGTACCTAAAAGCTTTGATCACG
1 TGTGTAGTACTATGTGAAGGATACTACATGAACCTAAAAGCTTTGATCACG
*
33613357 TGTGTAGTACTATGTGAAGGATATTACATGAACCATAAAA-C-TTGATCACG
1 TGTGTAGTACTATGTGAAGGATACTACATGAACC-TAAAAGCTTTGATCACG
* * *
33613407 TGTGTAATACTATGCGAAGGCTACTAC
1 TGTGTAGTACTATGTGAAGGATACTAC
33613434 GTGTATCGAA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 32 0.48
51 30 0.45
52 5 0.07
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGATACTACATGAACCTAAAAGCTTTGATCACG
Found at i:33624745 original size:23 final size:23
Alignment explanation
Indices: 33624719--33624762 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
33624709 AGACAAGGAA
*
33624719 GGTGGGGGAAGGAGAAATAAGAT
1 GGTGAGGGAAGGAGAAATAAGAT
*
33624742 GGTGAGTGAAGGAGAAATAAG
1 GGTGAGGGAAGGAGAAATAAG
33624763 GTAGTGAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.45, T:0.14
Consensus pattern (23 bp):
GGTGAGGGAAGGAGAAATAAGAT
Found at i:33624769 original size:23 final size:23
Alignment explanation
Indices: 33624726--33624772 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
33624716 GAAGGTGGGG
*
33624726 GAAGGAGAAATAAGATGGTGAGT
1 GAAGGAGAAATAAGATAGTGAGT
*
33624749 GAAGGAGAAATAAGGTAGTGAGT
1 GAAGGAGAAATAAGATAGTGAGT
33624772 G
1 G
33624773 GGTAAGGGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (23 bp):
GAAGGAGAAATAAGATAGTGAGT
Found at i:33625878 original size:33 final size:33
Alignment explanation
Indices: 33625829--33625896 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
33625819 CACCATTCCA
33625829 TTAGCCTAAATCCTTTTTGTAGATTTAGTTTTG
1 TTAGCCTAAATCCTTTTTGTAGATTTAGTTTTG
* *
33625862 TTAGCCTAGATGCTTTTTGTAGATTTAGTTTTG
1 TTAGCCTAAATCCTTTTTGTAGATTTAGTTTTG
33625895 TT
1 TT
33625897 TTCTTACTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.19, C:0.10, G:0.18, T:0.53
Consensus pattern (33 bp):
TTAGCCTAAATCCTTTTTGTAGATTTAGTTTTG
Found at i:33640420 original size:22 final size:22
Alignment explanation
Indices: 33640392--33640433 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
33640382 TCTCCCATTG
*
33640392 TGTAACACCCCTAACCTGTATC
1 TGTAACACCCCTAACATGTATC
*
33640414 TGTAACACCCGTAACATGTA
1 TGTAACACCCCTAACATGTA
33640434 CCCGTCCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (22 bp):
TGTAACACCCCTAACATGTATC
Found at i:33642218 original size:21 final size:21
Alignment explanation
Indices: 33642151--33642227 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 21
33642141 ATGTCCCTGG
*
33642151 CTCACACGGGCGTGTGCCTCCTC
1 CTCACATGGGCGTGT--CTCCTC
* * *
33642174 C-CACATGGGCATGTGTTC-C
1 CTCACATGGGCGTGTCTCCTC
33642193 CTCACATGGGCGTGTCTCCTC
1 CTCACATGGGCGTGTCTCCTC
*
33642214 CTCACTTGGGCGTG
1 CTCACATGGGCGTG
33642228 ATGACCTCTA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
19 2 0.05
20 16 0.36
21 14 0.32
22 11 0.25
23 1 0.02
ACGTcount: A:0.10, C:0.36, G:0.27, T:0.26
Consensus pattern (21 bp):
CTCACATGGGCGTGTCTCCTC
Found at i:33669048 original size:50 final size:50
Alignment explanation
Indices: 33668973--33669213 Score: 245
Period size: 50 Copynumber: 4.9 Consensus size: 50
33668963 CATTTGGGTA
*
33668973 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGAT
* * *
33669023 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGAT
* ** * * *
33669073 AAGAGTTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGAT
* ** * * * ****
33669123 GAGAACTCCCATGTAGGACCATATCTGGG-TATGGCATTGGTTGTACAGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA-AGAT
** *
33669172 AA-ACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
33669214 TGTTATTATT
Statistics
Matches: 156, Mismatches: 33, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
48 22 0.14
49 19 0.12
50 115 0.74
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGAT
Found at i:33674008 original size:50 final size:50
Alignment explanation
Indices: 33673941--33674226 Score: 369
Period size: 50 Copynumber: 5.7 Consensus size: 50
33673931 TTTCTTGTAC
* * * ** *
33673941 TGCCAATGCCATATCCCAGATATGGTCTAACATGAGAATTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * ** * *
33673991 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * *
33674041 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
* * *
33674091 TGCCAATGCCAT-TCCCAAACATGGTCTTACATGAGACCTCTCATCTTGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
*
33674140 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCA-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCT-AGG
*
33674190 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGA
33674227 TTTCTTTACC
Statistics
Matches: 206, Mismatches: 28, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
49 46 0.22
50 160 0.78
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTAGG
Found at i:33674152 original size:99 final size:100
Alignment explanation
Indices: 33673941--33674226 Score: 396
Period size: 99 Copynumber: 2.9 Consensus size: 100
33673931 TTTCTTGTAC
* * * * ** * *
33673941 TGCCAATGCCATATCCCAGATATGGTCTAACATGAGAATTCTCATATAGGTGCCCATGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGGTGCCAATGCCATGTC
** * *
33674006 CCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
66 CCAAACATGGTCTTACATGAGACCTCTCATCTCGA
* *
33674041 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAATGCCAT-TC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGGTGCCAATGCCATGTC
*
33674105 CCAAACATGGTCTTACATGAGACCTCTCATCTTGA
66 CCAAACATGGTCTTACATGAGACCTCTCATCTCGA
*
33674140 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCA-GTGCCAACGCCATGT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AGGTGCCAATGCCATGT
*
33674204 CCCAGACATGGTCTTACATGAGA
65 CCCAAACATGGTCTTACATGAGA
33674227 TTTCTTTACC
Statistics
Matches: 165, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
99 90 0.55
100 75 0.45
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (100 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGGTGCCAATGCCATGTC
CCAAACATGGTCTTACATGAGACCTCTCATCTCGA
Found at i:33674163 original size:149 final size:150
Alignment explanation
Indices: 33673941--33674223 Score: 442
Period size: 149 Copynumber: 1.9 Consensus size: 150
33673931 TTTCTTGTAC
* * * * *
33673941 TGCCAATGCCATATCCCAGATATGGTCTAACATGAGAATTCTCATATAGGTGCCCATGCCATGTC
1 TGCCAATGCCATATCCCAAACATGGTCTAACATGAGAACTCTCATATAGATGCCAATGCCATGTC
* *
33674006 CCAAACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTA
66 CCAAACATGGTCTTACAGGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTA
33674071 CATGGGACCTCTCATCTTGG
131 CATGGGACCTCTCATCTTGG
* * * *
33674091 TGCCAATGCCAT-TCCCAAACATGGTCTTACATGAGACCTCTCATCTTGATGCCAATGCCATGTC
1 TGCCAATGCCATATCCCAAACATGGTCTAACATGAGAACTCTCATATAGATGCCAATGCCATGTC
* *
33674155 CCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTA
66 CCAAACATGGTCTTACAGGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTA
33674220 CATG
131 CATG
33674224 AGATTTCTTT
Statistics
Matches: 120, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
149 108 0.90
150 12 0.10
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (150 bp):
TGCCAATGCCATATCCCAAACATGGTCTAACATGAGAACTCTCATATAGATGCCAATGCCATGTC
CCAAACATGGTCTTACAGGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTA
CATGGGACCTCTCATCTTGG
Found at i:33678899 original size:50 final size:50
Alignment explanation
Indices: 33678824--33679114 Score: 327
Period size: 50 Copynumber: 5.8 Consensus size: 50
33678814 CATTTGGGTA
* *
33678824 AAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
33678874 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* *
33678924 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * *
33678974 GAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * * * * * *
33679024 GAGAACTCTCATGTAAGACCATATCTGGGATATGACTTTGCCAATAC-AGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGC-A-CCGAGAT
** * *
33679074 AA-ATATCTCATGTAAGACCATGTCTGGGACATGGCTTTGGC
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGC
33679115 TTGTTATTAT
Statistics
Matches: 206, Mismatches: 33, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
49 33 0.16
50 169 0.82
51 3 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:33685780 original size:22 final size:21
Alignment explanation
Indices: 33685755--33685797 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
33685745 AAAGGTCCAA
33685755 ATAATGAATATTAATTCATAAT
1 ATAATGAATATTAATT-ATAAT
* *
33685777 ATAATTAATTTTAATTATAAT
1 ATAATGAATATTAATTATAAT
33685798 CCAATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
ATAATGAATATTAATTATAAT
Found at i:33706078 original size:19 final size:19
Alignment explanation
Indices: 33706041--33706079 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33706031 TAAAAAATAG
*
33706041 AGAAATAATATTTTGGAAA
1 AGAAATAATATTTTAGAAA
33706060 AGAAA-AATATGTTTAGAAA
1 AGAAATAATAT-TTTAGAAA
33706079 A
1 A
33706080 AATAATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.28
Consensus pattern (19 bp):
AGAAATAATATTTTAGAAA
Found at i:33710666 original size:25 final size:25
Alignment explanation
Indices: 33710638--33710692 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
33710628 ACTCTGATGG
* *
33710638 GCTTAGTGATACTTAGCTCGTATGA
1 GCTTAGTGATACTCAGCTCGTAGGA
* * *
33710663 GCTTATTGTTAGTCAGCTCGTAGGA
1 GCTTAGTGATACTCAGCTCGTAGGA
33710688 GCTTA
1 GCTTA
33710693 CCATTTATCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.36
Consensus pattern (25 bp):
GCTTAGTGATACTCAGCTCGTAGGA
Found at i:33714428 original size:27 final size:27
Alignment explanation
Indices: 33714394--33714571 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
33714384 TAAATTGTAC
*
33714394 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
33714421 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
33714447 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
33714475 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
33714502 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
33714530 GGCACTAAGTGTGC-AAGTTGATTATAT
1 AGCACTAAGTGTGCGAA-TTGACTATGT
*
33714557 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33714572 GACTTAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
27 104 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:33726325 original size:50 final size:50
Alignment explanation
Indices: 33726250--33726377 Score: 159
Period size: 50 Copynumber: 2.6 Consensus size: 50
33726240 TTTGGGTAAG
* * *
33726250 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGA
1 GAGGTCCCATGTAAGACCAAGTCTGGGACATGGCATGGGCACCGAGATGA
** *
33726300 GAGGTCCCCCGTAAGACCAAGTCTGGGACATGGCATGGGCACCGATATGA
1 GAGGTCCCATGTAAGACCAAGTCTGGGACATGGCATGGGCACCGAGATGA
** *
33726350 GAACTCCCTTGTAAGACCATA-TCTGGGA
1 GAGGTCCCATGTAAGACCA-AGTCTGGGA
33726378 TATGACATTA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
50 66 0.99
51 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
GAGGTCCCATGTAAGACCAAGTCTGGGACATGGCATGGGCACCGAGATGA
Found at i:33733533 original size:32 final size:32
Alignment explanation
Indices: 33733484--33733552 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
33733474 TCATTTTAAA
*
33733484 ATTCGTCATCTCCTAATCTAGCAGTTTAAAAT
1 ATTCATCATCTCCTAATCTAGCAGTTTAAAAT
* *
33733516 ATTCATCATCTCTTAATCTAGCAGTTTGAAAT
1 ATTCATCATCTCCTAATCTAGCAGTTTAAAAT
33733548 ATTCA
1 ATTCA
33733553 AGGAAAAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (32 bp):
ATTCATCATCTCCTAATCTAGCAGTTTAAAAT
Found at i:33734054 original size:26 final size:26
Alignment explanation
Indices: 33734025--33734075 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
33734015 ACACACCAAT
* *
33734025 ATCGCAACAAAGTTGCCAGTAATAGA
1 ATCGCAACAAAGCTGCCACTAATAGA
33734051 ATCGCAACAAAGCTGCCACTAATAG
1 ATCGCAACAAAGCTGCCACTAATAG
33734076 TATATGTGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (26 bp):
ATCGCAACAAAGCTGCCACTAATAGA
Found at i:33734316 original size:27 final size:27
Alignment explanation
Indices: 33734286--33734619 Score: 319
Period size: 27 Copynumber: 12.4 Consensus size: 27
33734276 GGTATAAAAA
* *
33734286 TCATTTTACCCTATAGGGGTATTTCAG
1 TCATTTTACCCTATCGGGGTATTTCGG
*
33734313 TCATTTTACCCT-TCGAGGGTATTTTGG
1 TCATTTTACCCTATCG-GGGTATTTCGG
* *
33734340 TCATTTTA-CCTTTCGAGGGTATTTCAG
1 TCATTTTACCCTATCG-GGGTATTTCGG
33734367 TCATTTTACCCTA-CGGGGTATTTCGG
1 TCATTTTACCCTATCGGGGTATTTCGG
*
33734393 TCATTTTACCCT-TTGGAGGTATTTCGG
1 TCATTTTACCCTATCGG-GGTATTTCGG
*
33734420 TCATTTTACCCTAT-GAGGGTATTTTGG
1 TCATTTTACCCTATCG-GGGTATTTCGG
*
33734447 TCATTTTACCCT-TCGAGGGTATTTCGA
1 TCATTTTACCCTATCG-GGGTATTTCGG
* * * *
33734474 TCCTTTTATCCTATGGGGGTAATTT-AG
1 TCATTTTACCCTATCGGGGT-ATTTCGG
*
33734501 TCATTTTACCCTATAGGGGTAATTT-GG
1 TCATTTTACCCTATCGGGGT-ATTTCGG
* * *
33734528 TCATTTTACCCTGTGGGGGTAATTCGG
1 TCATTTTACCCTATCGGGGTATTTCGG
* *
33734555 TCATTTTACCCT-TTGAGGGTATTTTGG
1 TCATTTTACCCTATCG-GGGTATTTCGG
* * *
33734582 TCATTTTACCCT-TCGAGAGTATTTTGA
1 TCATTTTACCCTATCG-GGGTATTTCGG
*
33734609 TAATTTTACCC
1 TCATTTTACCC
33734620 ATGAATCGCA
Statistics
Matches: 265, Mismatches: 30, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
26 35 0.13
27 219 0.83
28 11 0.04
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATCGGGGTATTTCGG
Found at i:33734509 original size:81 final size:82
Alignment explanation
Indices: 33734286--33734619 Score: 371
Period size: 81 Copynumber: 4.1 Consensus size: 82
33734276 GGTATAAAAA
* * *
33734286 TCATTTTACCCTATAGGGGTATTTC-AGTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTA-C
1 TCATTTTACCCTATCGGGGTATTTCGA-TCATTTTACCCTTTGAGGGTAATTTGGTCATTTTACC
* **
33734349 CTTTCGAGGGTATTTCAG
65 CTATCGAGGGTATTTTGG
*
33734367 TCATTTTACCCTA-CGGGGTATTTCGGTCATTTTACCCTTTG-GAGGT-ATTTCGGTCATTTTAC
1 TCATTTTACCCTATCGGGGTATTTCGATCATTTTACCCTTTGAG-GGTAATTT-GGTCATTTTAC
33734429 CCTAT-GAGGGTATTTTGG
64 CCTATCGAGGGTATTTTGG
* * * * *
33734447 TCATTTTACCCT-TCGAGGGTATTTCGATCCTTTTATCCTATGGGGGTAATTTAGTCATTTTACC
1 TCATTTTACCCTATCG-GGGTATTTCGATCATTTTACCCTTTGAGGGTAATTTGGTCATTTTACC
* *
33734511 CTATAG-GGGTAATTTGG
65 CTATCGAGGGTATTTTGG
* * * * *
33734528 TCATTTTACCCTGTGGGGGTAATTCGGTCATTTTACCCTTTGAGGGTATTTTGGTCATTTTACCC
1 TCATTTTACCCTATCGGGGTATTTCGATCATTTTACCCTTTGAGGGTAATTTGGTCATTTTACCC
* *
33734593 T-TCGAGAGTATTTTGA
66 TATCGAGGGTATTTTGG
*
33734609 TAATTTTACCC
1 TCATTTTACCC
33734620 ATGAATCGCA
Statistics
Matches: 215, Mismatches: 27, Indels: 22
0.81 0.10 0.08
Matches are distributed among these distances:
79 4 0.02
80 64 0.30
81 139 0.65
82 8 0.04
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (82 bp):
TCATTTTACCCTATCGGGGTATTTCGATCATTTTACCCTTTGAGGGTAATTTGGTCATTTTACCC
TATCGAGGGTATTTTGG
Found at i:33736588 original size:68 final size:70
Alignment explanation
Indices: 33736450--33736593 Score: 177
Period size: 68 Copynumber: 2.1 Consensus size: 70
33736440 CTTAAAATCG
* * *
33736450 AATGCATATACTCTATAAACATGAATCGCCGAACGCATATATACATATATGCATGAAAAATATTA
1 AATGTATATACACTATAAACATGAATAGCCGAACGCATATATACA-ATATGCATGAAAAATATTA
33736515 GAACCA
65 GAACCA
* * * *
33736521 AATGTATATACACTTTAAACAT-ATTAGCCGAATGCATATATAC-ATATGC-TTAACAAATATTA
1 AATGTATATACACTATAAACATGAATAGCCGAACGCATATATACAATATGCATGAA-AAATATTA
*
33736583 TAACCA
65 GAACCA
33736589 AATGT
1 AATGT
33736594 GTACATGTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
67 3 0.05
68 24 0.38
70 18 0.28
71 19 0.30
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (70 bp):
AATGTATATACACTATAAACATGAATAGCCGAACGCATATATACAATATGCATGAAAAATATTAG
AACCA
Found at i:33736992 original size:41 final size:41
Alignment explanation
Indices: 33736951--33737090 Score: 190
Period size: 41 Copynumber: 3.4 Consensus size: 41
33736941 ACAACTAGCT
* * * *
33736951 TGCTAGATGAAAAGTCTGAAATATTTCACTGGCATCAAGCT
1 TGCTAGATGTAAAGTCTGAAACATTTCACCGGCATCAAGCC
*
33736992 TGCTAGATGTAAAGTCTGAAACATTTCACCAGCATCAAGCC
1 TGCTAGATGTAAAGTCTGAAACATTTCACCGGCATCAAGCC
* * *
33737033 TGCTAGACGTAAAGTCTAAAACATTTCGCCGGCATCAAGCC
1 TGCTAGATGTAAAGTCTGAAACATTTCACCGGCATCAAGCC
**
33737074 TGCTAGACATAAAGTCT
1 TGCTAGATGTAAAGTCT
33737091 AAATTATCTC
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 89 1.00
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (41 bp):
TGCTAGATGTAAAGTCTGAAACATTTCACCGGCATCAAGCC
Found at i:33737692 original size:6 final size:6
Alignment explanation
Indices: 33737681--33737787 Score: 196
Period size: 6 Copynumber: 17.7 Consensus size: 6
33737671 AAATACACAT
*
33737681 ATATAC ATATAC ATATAC AATATAA ATATAC ATATAC ATATAC ATATAC
1 ATATAC ATATAC ATATAC -ATATAC ATATAC ATATAC ATATAC ATATAC
33737730 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC
33737778 ATATAC ATAT
1 ATATAC ATAT
33737788 CTTTGATTAA
Statistics
Matches: 98, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
6 93 0.95
7 5 0.05
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (6 bp):
ATATAC
Found at i:33745202 original size:41 final size:41
Alignment explanation
Indices: 33745157--33745303 Score: 215
Period size: 41 Copynumber: 3.6 Consensus size: 41
33745147 ACCAGCAATT
* * *
33745157 AGCCTGCTAGACGTAAAGCCTAAAATATTTC-CCTGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACC-GGCATCA
* *
33745198 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGTATTA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
* *
33745239 AGCTTGCTAGACGTAAAGTTTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
33745280 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
33745304 TTATCTCATT
Statistics
Matches: 94, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
41 92 0.98
42 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:33747086 original size:69 final size:70
Alignment explanation
Indices: 33746960--33747121 Score: 186
Period size: 69 Copynumber: 2.3 Consensus size: 70
33746950 AAGGCTTATG
* * * *
33746960 CGGCGTTTTTGGGAAAGCACCACAAAAAAAAATCCCAACGGCATCGTTTTCTGAGCTTTCATGGA
1 CGGCGTTTTTGAGAAAGCGCCGCAAAAAAAAAGCCCAACGGCATCGTTTTCTGAGCTTTCATGGA
33747025 TTTAA
66 TTTAA
* *
33747030 CGGCGTTTTTGAGAAAGCGCCGC-AAAAAAAAGCCCAACGG--TGCTGTTTTCTTAGCTTTCGTG
1 CGGCGTTTTTGAGAAAGCGCCGCAAAAAAAAAGCCCAACGGCAT-C-GTTTTCTGAGCTTTCATG
*
33747092 GATTTAG
64 GATTTAA
* * * *
33747099 CAGTGTTTTTAATAAAGCGCCGC
1 CGGCGTTTTTGAGAAAGCGCCGC
33747122 TAATGCTTAG
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
67 1 0.01
68 1 0.01
69 57 0.72
70 20 0.25
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (70 bp):
CGGCGTTTTTGAGAAAGCGCCGCAAAAAAAAAGCCCAACGGCATCGTTTTCTGAGCTTTCATGGA
TTTAA
Found at i:33747310 original size:217 final size:223
Alignment explanation
Indices: 33747025--33747452 Score: 627
Period size: 221 Copynumber: 1.9 Consensus size: 223
33747015 CTTTCATGGA
** *
33747025 TTTAACGGCGTTTTTGAGAAAGCGCCGCAAAAAAAAGCCCAACGGTGCTGTTTTCTTAGCTTTCG
1 TTTAACGGCGTTTTTGAGAAAGCGCCGCAAAAAAAAGCCCAACGGTGCCATTTTCTGAGCTTTCG
* * *
33747090 TGGATTTAGCAGTGTTTTTAATAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCATTTTTGGGAA
66 TGGATTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCATTTTTCGGAA
* * *
33747155 A-AC-GC-CACAAAAAAAATCCCAACGGCGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCATTT
131 ACACTGCAAACAAAAAAAAGCCCAACGGCGCCGTTTTCTGAGCTTTCAGGGATTTAGCGACATTT
33747217 TTAGGAAAGCGCCGCTAATGCTCAGGGC
196 TTAGGAAAGCGCCGCTAATGCTCAGGGC
* *
33747245 TTTAGCGGCGTTTTTTG-GAAAGCG-C-CAAAAAAAAGCCCAATGGTGCCATTTT-TGAGCTTTC
1 TTTAACGGCG-TTTTTGAGAAAGCGCCGCAAAAAAAAGCCCAACGGTGCCATTTTCTGAGCTTTC
* * * *
33747306 GTGGATTTAGCGGCGTTTTTAAGAAAGTGTCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTCGGA
65 GTGGATTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCATTTTTCGGA
* * *
33747371 AAGCACTTCAAACAAAAATAAGCCCAACGGCGCCGTTTTCTGAGCTTTCAGGGATTTAGCGACGT
130 AA-CACTGCAAACAAAAAAAAGCCCAACGGCGCCGTTTTCTGAGCTTTCAGGGATTTAGCGACAT
33747436 TTTTAGGAAAGCGCCGC
194 TTTTAGGAAAGCGCCGC
33747453 AAAAAAAACT
Statistics
Matches: 185, Mismatches: 18, Indels: 9
0.87 0.08 0.04
Matches are distributed among these distances:
217 68 0.37
218 24 0.13
219 3 0.02
220 17 0.09
221 73 0.39
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (223 bp):
TTTAACGGCGTTTTTGAGAAAGCGCCGCAAAAAAAAGCCCAACGGTGCCATTTTCTGAGCTTTCG
TGGATTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCATTTTTCGGAA
ACACTGCAAACAAAAAAAAGCCCAACGGCGCCGTTTTCTGAGCTTTCAGGGATTTAGCGACATTT
TTAGGAAAGCGCCGCTAATGCTCAGGGC
Found at i:33747351 original size:107 final size:110
Alignment explanation
Indices: 33747025--33747452 Score: 517
Period size: 110 Copynumber: 3.9 Consensus size: 110
33747015 CTTTCATGGA
* * * * *
33747025 TTTAACGGCG-TTTTTGAGAAAGCGCCGCAAAAAAAAGCCCAACGGTGCTGTTTTCTTAGCTTTC
1 TTTAGCGGCGTTTTTTG-GAAAGCGCCTCAAAAAAAAGCCCAACGGCGCCGTTTTCTGAGCTTTC
* * *
33747089 -GTGGATTTAGCAGTGTTTTTAATAAAGCGCCGCTAATGCTTAGGGC
65 AG-GGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGC
* * * * *
33747135 TTTAGCGGCATTTTTGGGAAAACGCCACAAAAAAAATCCCAACGGCGCCGTTTTCTGAGCTTTCA
1 TTTAGCGGCGTTTTTTGGAAAGCGCCTCAAAAAAAAGCCCAACGGCGCCGTTTTCTGAGCTTTCA
* * *
33747200 GGGATTTAGCGGCATTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
66 GGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGC
* * *
33747245 TTTAGCGGCGTTTTTTGGAAAGCG-C-CAAAAAAAAGCCCAATGGTGCCATTTT-TGAGCTTTC-
1 TTTAGCGGCGTTTTTTGGAAAGCGCCTCAAAAAAAAGCCCAACGGCGCCGTTTTCTGAGCTTTCA
* *
33747306 GTGGATTTAGCGGCGTTTTTAAGAAAGTGTCGCTAATGCTTAGGGC
66 G-GGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGC
* * *
33747352 TTTAGCGGCGTTTTTCGGAAAGCACTTCAAACAAAAATAAGCCCAACGGCGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTTGGAAAGCGCCTC--A-AAAAA-AAGCCCAACGGCGCCGTTTTCTGAGCT
* *
33747417 TTCAGGGATTTAGCGACGTTTTTAGGAAAGCGCCGC
62 TTCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGC
33747453 AAAAAAAACT
Statistics
Matches: 270, Mismatches: 37, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
106 1 0.00
107 70 0.26
108 23 0.09
109 2 0.01
110 108 0.40
111 7 0.03
112 5 0.02
113 17 0.06
114 36 0.13
115 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (110 bp):
TTTAGCGGCGTTTTTTGGAAAGCGCCTCAAAAAAAAGCCCAACGGCGCCGTTTTCTGAGCTTTCA
GGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGC
Found at i:33747471 original size:73 final size:73
Alignment explanation
Indices: 33747347--33747525 Score: 218
Period size: 73 Copynumber: 2.5 Consensus size: 73
33747337 GCTAATGCTT
* * * ** *
33747347 AGGGCTTTAGCGGCGTTTTTCGGAAAGCACTTCAAACAAAAATAAGCCCAACGGCGCCGTTTTCT
1 AGGGATTTAGCGACGTTTTTAGGAAAGCACCGCAAACAAAAATAAGCCCAACAGCGCCGTTTTCT
33747412 GAGCTTTC
66 GAGCTTTC
* * *
33747420 AGGGATTTAGCGACGTTTTTAGGAAAGCGCCGCAAA-AAAAACTAAGCCCAACAGTGCCGTTTTT
1 AGGGATTTAGCGACGTTTTTAGGAAAGCACCGCAAACAAAAA-TAAGCCCAACAGCGCCGTTTTC
*
33747484 TGAGCTTTT
65 TGAGCTTTC
* *
33747493 GGGGATTTAGC-AGCATTTTTAGGAAAGCACCGC
1 AGGGATTTAGCGA-CGTTTTTAGGAAAGCACCGC
33747526 TAATGCTCAG
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
72 6 0.07
73 85 0.93
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (73 bp):
AGGGATTTAGCGACGTTTTTAGGAAAGCACCGCAAACAAAAATAAGCCCAACAGCGCCGTTTTCT
GAGCTTTC
Found at i:33747543 original size:114 final size:114
Alignment explanation
Indices: 33747418--33747769 Score: 431
Period size: 114 Copynumber: 3.1 Consensus size: 114
33747408 TTCTGAGCTT
*
33747418 TCAGGGATTTAGCGACGTTTTTAGGAAAGCGCCGCAAAAAAAACTAAGCCCAACAGTGCCGTTTT
1 TCAGGGATTTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAAACTAAGCCCAACAGTGCCGTTTT
* * * *
33747483 TTGAGCTTTTGGGGATTTAGCAGCATTTTTAGGAAAGCACCGCTAATGC
66 CTGAGCTTTCGGGGATTTAGCAGCATTTTTAAGAAAGCGCCGCTAATGC
* * * * * *
33747532 TCAGGGCTTTAGCGGC-ATTTTCGAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGGTGCCATTT
1 TCAGGGATTTAGCGGCGTTTTTAG-GAAAGCGCCGCAAAAAAAACTAAGCCCAACAGTGCCGTTT
** *
33747595 TCTGAGCTTTCAAGGATTTAGCAGCATTTTTAAGAAAGCGCCGCTAATGT
65 TCTGAGCTTTCGGGGATTTAGCAGCATTTTTAAGAAAGCGCCGCTAATGC
* * * * * *
33747645 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCACCACAACAAAAACTAAGCCCAACTGCT-CCGTTT
1 TCAGGGATTTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAAACTAAGCCCAACAG-TGCCGTTT
* * ** * *
33747709 TCCGAGCTTTCGGGGATTTAGCGGTGTTTTTAAGATAGTGCCGCTAATGC
65 TCTGAGCTTTCGGGGATTTAGCAGCATTTTTAAGAAAGCGCCGCTAATGC
33747759 TCAGGGATTTA
1 TCAGGGATTTA
33747770 AAATAATTTA
Statistics
Matches: 202, Mismatches: 32, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
113 98 0.49
114 103 0.51
115 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (114 bp):
TCAGGGATTTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAAACTAAGCCCAACAGTGCCGTTTT
CTGAGCTTTCGGGGATTTAGCAGCATTTTTAAGAAAGCGCCGCTAATGC
Found at i:33747617 original size:113 final size:113
Alignment explanation
Indices: 33747442--33747769 Score: 415
Period size: 113 Copynumber: 2.9 Consensus size: 113
33747432 ACGTTTTTAG
* * *
33747442 GAAAGCGCCGCAAAAAAAACTAAGCCCAACAGTGCCGTTTTTTGAGCTTTTGGGGATTTAGCAGC
1 GAAAGCGCCGC-AAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCGGGGATTTAGCAGC
* *
33747507 ATTTTTAGGAAAGCACCGCTAATGCTCAGGGCTTTAGCGGCATTTTCGA
65 ATTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTCGA
* * **
33747556 GAAAGCGCCGCAAAAAACCTAAGCCCAACGGTGCCATTTTCTGAGCTTTCAAGGATTTAGCAGCA
1 GAAAGCGCCGCAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCGGGGATTTAGCAGCA
* * * *
33747621 TTTTTAAGAAAGCGCCGCTAATGTTCAGGGCTTTAGCGGCGTTTTTGG
66 TTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTCGA
* * * * *
33747669 GAAAGCACCACAACAAAAACTAAGCCCAACTGCT-CCGTTTTCCGAGCTTTCGGGGATTTAGCGG
1 GAAAGCGCCGCAA-AAAAACTAAGCCCAAC-GGTGCCGTTTTCTGAGCTTTCGGGGATTTAGCAG
** * * *
33747733 TGTTTTTAAGATAGTGCCGCTAATGCTCAGGGATTTA
64 CATTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTA
33747770 AAATAATTTA
Statistics
Matches: 184, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
113 100 0.54
114 82 0.45
115 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (113 bp):
GAAAGCGCCGCAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCGGGGATTTAGCAGCA
TTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTCGA
Found at i:33747634 original size:186 final size:187
Alignment explanation
Indices: 33747293--33747638 Score: 473
Period size: 187 Copynumber: 1.9 Consensus size: 187
33747283 AATGGTGCCA
* * * *** *
33747293 TTTTTGAGCTTTCGTGGATTTAGCGGCGTTTTTAAGAAAGTGTCGCTAATGCTTAGGGCTTTAGC
1 TTTTTGAGCTTTCGGGGATTTAGCAGCATTTTTAAGAAAGCACCGCTAATGCTCAGGGCTTTAGC
* ** * *
33747358 GGCGTTTTTCGGAAAGCACTTCAAACAAAAATAAGCCCAACGGCGCCGTTTTCTGAGCTTTCAGG
66 GGCGATTTTCGGAAAGCACCGCAAACAAAAATAAGCCCAACGGCGCCATTTTCTGAGCTTTCAAG
* *
33747423 GATTTAGCGACGTTTTTAGGAAAGCGCCGCAAAAAAAACTAAGCCCAACAGTGCCGT
131 GATTTAGCGACATTTTTAAGAAAGCGCCGCAAAAAAAACTAAGCCCAACAGTGCCGT
* *
33747480 TTTTTGAGCTTTTGGGGATTTAGCAGCATTTTTAGGAAAGCACCGCTAATGCTCAGGGCTTTAGC
1 TTTTTGAGCTTTCGGGGATTTAGCAGCATTTTTAAGAAAGCACCGCTAATGCTCAGGGCTTTAGC
* ** *
33747545 GGC-ATTTTCGAGAAAGCGCCGCAAA-AAACCTAAGCCCAACGGTGCCATTTTCTGAGCTTTCAA
66 GGCGATTTTCG-GAAAGCACCGCAAACAAAAATAAGCCCAACGGCGCCATTTTCTGAGCTTTCAA
33747608 GGATTTAGC-AGCATTTTTAAGAAAGCGCCGC
130 GGATTTAGCGA-CATTTTTAAGAAAGCGCCGC
33747639 TAATGTTCAG
Statistics
Matches: 137, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
185 1 0.01
186 66 0.48
187 70 0.51
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (187 bp):
TTTTTGAGCTTTCGGGGATTTAGCAGCATTTTTAAGAAAGCACCGCTAATGCTCAGGGCTTTAGC
GGCGATTTTCGGAAAGCACCGCAAACAAAAATAAGCCCAACGGCGCCATTTTCTGAGCTTTCAAG
GATTTAGCGACATTTTTAAGAAAGCGCCGCAAAAAAAACTAAGCCCAACAGTGCCGT
Found at i:33748047 original size:16 final size:15
Alignment explanation
Indices: 33748026--33748077 Score: 61
Period size: 16 Copynumber: 3.5 Consensus size: 15
33748016 GGTGTTATGC
33748026 TTTAGGGGTTAGGGG
1 TTTAGGGGTTAGGGG
*
33748041 ATTTAGGGGTCAGGGG
1 -TTTAGGGGTTAGGGG
* *
33748057 -TTAGGGATTTGGGG
1 TTTAGGGGTTAGGGG
33748071 TTTAGGG
1 TTTAGGG
33748078 TTTCAACAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
14 11 0.35
15 6 0.19
16 14 0.45
ACGTcount: A:0.15, C:0.02, G:0.50, T:0.33
Consensus pattern (15 bp):
TTTAGGGGTTAGGGG
Found at i:33748066 original size:22 final size:22
Alignment explanation
Indices: 33748029--33748071 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
33748019 GTTATGCTTT
33748029 AGGGGTTAGGGGATTTAGGGGTC
1 AGGGGTTAGGGGATTT-GGGGTC
33748052 AGGGGTTA-GGGATTTGGGGT
1 AGGGGTTAGGGGATTTGGGGT
33748072 TTAGGGTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 5 0.25
22 7 0.35
23 8 0.40
ACGTcount: A:0.16, C:0.02, G:0.53, T:0.28
Consensus pattern (22 bp):
AGGGGTTAGGGGATTTGGGGTC
Found at i:33748492 original size:20 final size:18
Alignment explanation
Indices: 33748449--33748484 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
33748439 AAATATAAGA
33748449 AAAATAAAATAAAAAAAT
1 AAAATAAAATAAAAAAAT
*
33748467 ATAAATGAAATAAAAAAA
1 A-AAATAAAATAAAAAAA
33748485 ACTAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 1 0.06
19 15 0.94
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (18 bp):
AAAATAAAATAAAAAAAT
Found at i:33763775 original size:6 final size:6
Alignment explanation
Indices: 33763764--33763790 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
33763754 TAACTGGTGA
33763764 GTGTAT GTGTAT GTGTAT GTGTAT GTG
1 GTGTAT GTGTAT GTGTAT GTGTAT GTG
33763791 AAGTATCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.37, T:0.48
Consensus pattern (6 bp):
GTGTAT
Found at i:33764724 original size:21 final size:19
Alignment explanation
Indices: 33764700--33764741 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
33764690 ACTTTTTCAA
33764700 TCATCCCTCATCCATCATCTC
1 TCATCCCTC-T-CATCATCTC
*
33764721 TCATCCCTCTCATCCTCTC
1 TCATCCCTCTCATCATCTC
33764740 TC
1 TC
33764742 TCAACTCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
20 1 0.05
21 9 0.45
ACGTcount: A:0.14, C:0.50, G:0.00, T:0.36
Consensus pattern (19 bp):
TCATCCCTCTCATCATCTC
Found at i:33773237 original size:106 final size:106
Alignment explanation
Indices: 33773044--33773776 Score: 1027
Period size: 106 Copynumber: 6.9 Consensus size: 106
33773034 TGGATTGAGA
* ** * * * *
33773044 TTTATAAGGATATTCGGATATTTGGTCGAACGAGAAATCGAAACCCAACATGTTAGGGCACGTTT
1 TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAACTCGAAACCCAGCACGTTAGGGCACGTTT
* * * * *
33773109 TCTCAAATTTTCAAACGCAAAATATTACTTTACTTTGAAAT
66 CCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
33773150 TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAACTCGAAACCCAGCACGTTAGGGCACGTTT
1 TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAACTCGAAACCCAGCACGTTAGGGCACGTTT
* * *
33773215 CCTCGAATTTCCAAACGTAAAATATCGCCTTACTTTGAAAA
66 CCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
* * * * * *
33773256 TTTAAAAGGATATTTAGATTTTTTGTCGAATGAGAACTCAAAACCCAGCACGTTAGGGCACATTT
1 TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAACTCGAAACCCAGCACGTTAGGGCACGTTT
* * **
33773321 CCTCGAATTTCTAAACACAAAATATTGCCTTACTTCAAAAT
66 CCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
* * * *
33773362 TTTAAATGGATATTTGGCTATTTGGTCGAACGAGAAATTGAAACCCAGCACGTTAGGGCACGTTT
1 TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAACTCGAAACCCAGCACGTTAGGGCACGTTT
* * *
33773427 TCTCGAATTTCCAAACGTAAAATATTGCTTTACTTTGAAAT
66 CCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
* *
33773468 TTTAAAAGGATATTTAGCTATTTGGTTGAACGAGAACTCGAAGCCCAGCACGTTAGGGCACGTTT
1 TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAACTCGAAACCCAGCACGTTAGGGCACGTTT
* *
33773533 CCTCAAATTTCCAAACGCAAAATATCGCCTTACTTTGAAAT
66 CCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
* * *
33773574 ATTAAAAGGATATTTAGCTATTTGGTCGAATGAGAACTCGAAACCCAGCACGTTAGGGTACGTTT
1 TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAACTCGAAACCCAGCACGTTAGGGCACGTTT
** * * *
33773639 CCTCGAATTTCTGAATGCAAAATATTACCTTCCTTTGAAAT
66 CCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
* * *
33773680 TTTAAGAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGCTT
1 TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAACTCGAAACCCAGCACGTTAGGGCACG-TT
33773745 T-CTCGAATTTCCAAACGCAAAATATTGCCTTA
65 TCCTCGAATTTCCAAACGCAAAATATTGCCTTA
33773777 TTTTAAAACT
Statistics
Matches: 547, Mismatches: 79, Indels: 2
0.87 0.13 0.00
Matches are distributed among these distances:
106 544 0.99
107 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (106 bp):
TTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAACTCGAAACCCAGCACGTTAGGGCACGTTT
CCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAAT
Found at i:33773628 original size:318 final size:318
Alignment explanation
Indices: 33773050--33773772 Score: 1171
Period size: 318 Copynumber: 2.3 Consensus size: 318
33773040 GAGATTTATA
* * * * *
33773050 AGGATATTCGGATATTTGGTCGAACGAGAAATCGAAACCCAACATGTTAGGGCACGTTTTCTCAA
1 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
* *
33773115 ATTTTCAAACGCAAAATATTACTTTACTTTGAAATTTTAAAAGGATATTTAGCTATTTGGTCGAA
66 ATTTCCAAACGCAAAATATTGCTTTACTTTGAAATTTTAAAAGGATATTTAGCTATTTGGTCGAA
* *
33773180 CGAGAACTCGAAACCCAGCACGTTAGGGCACGTTTCCTCGAATTTCCAAACGTAAAATATCGCCT
131 CGAGAACTCGAAACCCAGCACGTTAGGGCACGTTTCCTCAAATTTCCAAACGCAAAATATCGCCT
* *
33773245 TACTTTGAAAATTTAAAAGGATATTTAGATTTTTTGTCGAATGAGAACTCAAAACCCAGCACGTT
196 TACTTTGAAAATTTAAAAGGATATTTAGATATTTGGTCGAATGAGAACTCAAAACCCAGCACGTT
*
33773310 AGGGCACATTTCCTCGAATTTCTAAACACAAAATATTGCCTTACTTCAAAATTTTAA-
261 AGGGCACATTTCCTCGAATTTCTAAACACAAAATATTACCTTACTTCAAAATTTTAAG
*
33773367 ATGGATATTTGGCTATTTGGTCGAACGAGAAATTGAAACCCAGCACGTTAGGGCACGTTTTCTCG
1 A-GGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCG
* *
33773432 AATTTCCAAACGTAAAATATTGCTTTACTTTGAAATTTTAAAAGGATATTTAGCTATTTGGTTGA
65 AATTTCCAAACGCAAAATATTGCTTTACTTTGAAATTTTAAAAGGATATTTAGCTATTTGGTCGA
*
33773497 ACGAGAACTCGAAGCCCAGCACGTTAGGGCACGTTTCCTCAAATTTCCAAACGCAAAATATCGCC
130 ACGAGAACTCGAAACCCAGCACGTTAGGGCACGTTTCCTCAAATTTCCAAACGCAAAATATCGCC
* *
33773562 TTACTTTG-AAATATTAAAAGGATATTTAGCTATTTGGTCGAATGAGAACTCGAAACCCAGCACG
195 TTACTTTGAAAAT-TTAAAAGGATATTTAGATATTTGGTCGAATGAGAACTCAAAACCCAGCACG
* * * ** * **
33773626 TTAGGGTACGTTTCCTCGAATTTCTGAATGCAAAATATTACCTTCCTTTGAAATTTTAAG
259 TTAGGGCACATTTCCTCGAATTTCTAAACACAAAATATTACCTTACTTCAAAATTTTAAG
*
33773686 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGCTTTCTCGA
1 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
33773751 ATTTCCAAACGCAAAATATTGC
66 ATTTCCAAACGCAAAATATTGC
33773773 CTTATTTTAA
Statistics
Matches: 374, Mismatches: 29, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
317 5 0.01
318 368 0.98
319 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.31
Consensus pattern (318 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGA
ATTTCCAAACGCAAAATATTGCTTTACTTTGAAATTTTAAAAGGATATTTAGCTATTTGGTCGAA
CGAGAACTCGAAACCCAGCACGTTAGGGCACGTTTCCTCAAATTTCCAAACGCAAAATATCGCCT
TACTTTGAAAATTTAAAAGGATATTTAGATATTTGGTCGAATGAGAACTCAAAACCCAGCACGTT
AGGGCACATTTCCTCGAATTTCTAAACACAAAATATTACCTTACTTCAAAATTTTAAG
Found at i:33774300 original size:17 final size:16
Alignment explanation
Indices: 33774277--33774317 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
33774267 AAAACTGATT
*
33774277 TAAAAAAAAAAAGAAAA
1 TAAAAAAAATAA-AAAA
33774294 TAGAAAAAAATAAAAAA
1 TA-AAAAAAATAAAAAA
33774311 TAAAAAA
1 TAAAAAA
33774318 TTATGAGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 5 0.23
17 8 0.36
18 9 0.41
ACGTcount: A:0.85, C:0.00, G:0.05, T:0.10
Consensus pattern (16 bp):
TAAAAAAAATAAAAAA
Found at i:33775828 original size:44 final size:41
Alignment explanation
Indices: 33775778--33776327 Score: 399
Period size: 44 Copynumber: 12.9 Consensus size: 41
33775768 TTTAATCCGA
* *
33775778 TCCACTGTAACTTCAGGGAGATAGGATTGGTTTCTACTGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTA---TCTGC
* * * *
33775822 TCCACTGCAACTTCAGGGAGATAAG-CTGGATGCGATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTATCTGC
* * * *
33775862 TCTACTGCAACTTCAGAGAGATAAGATCTGTGTTTTTAATCCGC
1 TCCACTGCAACTTCAGGGAGATAAGAT-TG-GTTTCT-ATCTGC
* *
33775906 TCCACTGCAACTTTAGGGAGATAGGATTGGTTTCT-TCTGTCTAC
1 TCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTATCTG----C
* * *** *
33775950 TCCACTGCAACTTCAGAGAGATAAGACTGGAAGCGATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTATCTGC
* * * *
33775991 TCTACTGCAACTTCAGAGAGATAAGATCTGTGTTTTTAATCCGC
1 TCCACTGCAACTTCAGGGAGATAAGAT-TG-GTTTCT-ATCTGC
* * * *
33776035 TCCATTGCAATTTCAGGGAGATAGGATTGGTTTCTTCTGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTGG--T-TTCTATCTGC
* *** *
33776079 TCCACTGCAACTTCAGGGAGATAAGACTGGAAGCGATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTATCTGC
* * * *
33776120 TCTACTGCAACTTTAGAGAGATAAGATCTGTGGTTT-TAATCCGC
1 TCCACTGCAACTTCAGGGAGATAAGA--T-TGGTTTCT-ATCTGC
*
33776164 TCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTTCTGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTGG--T-TTCTATCTGC
* * * * * * *
33776208 TCCACTACAACTTCAAGAAGATAAGACTGGATGCGATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTATCTGC
* * *
33776249 TCCACTGCAACTTCAGAGAGTTAAGATCTGTGGTTT-TAATCCGC
1 TCCACTGCAACTTCAGGGAGATAAGA--T-TGGTTTCT-ATCTGC
33776293 TCCACTGCAACTTCAGGGAGAT-AGCATTGGTTTCT
1 TCCACTGCAACTTCAGGGAGATAAG-ATTGGTTTCT
33776328 TTTGATCTGT
Statistics
Matches: 390, Mismatches: 87, Indels: 60
0.73 0.16 0.11
Matches are distributed among these distances:
40 31 0.08
41 92 0.24
42 13 0.03
43 16 0.04
44 230 0.59
45 8 0.02
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (41 bp):
TCCACTGCAACTTCAGGGAGATAAGATTGGTTTCTATCTGC
Found at i:33776044 original size:85 final size:84
Alignment explanation
Indices: 33775817--33776315 Score: 332
Period size: 85 Copynumber: 5.8 Consensus size: 84
33775807 GTTTCTACTG
* * *** * *
33775817 TCTGCTCCACTGCAACTTCAGGGAGATAAG--CTGG-ATGCGATCTGCTCTACTGCAACTTCAGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGGTTTTTAATCCGCTCCACTGCAACTTCAGA
* ***
33775879 GAGATAAGATCTGTGTTTTTAA
66 GAGATAAGA-CTG-G-ATGCGA
* * * * ** **
33775901 TCCGCTCCACTGCAACTTTAGGGAGATAGGAT-TGGTTTCTTCTGTCTACTCCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGGTTT-TT-AATCCGCTCCACTGCAACTTCA
*
33775965 GAGAGATAAGACTGGAAGCGA
64 GAGAGATAAGACTGGATGCGA
* * *
33775986 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGTTTTTAATCCGCTCCATTGCAATTTCAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTG-GTTTTTAATCCGCTCCACTGCAACTTCAG
* * * * *
33776051 GGAGATAGGATTGGTTTCTTCTG-
65 AGAGATAAGACTGG---ATGC-GA
* ***** * * *
33776074 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGG-AAGCGATCTGCTCTACTGCAACTTTAGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGGTTTTTAATCCGCTCCACTGCAACTTCAGA
* ***
33776137 GAGATAAGATCTGTGGTTTTAA
66 GAGATAAGA-C--TGGATGCGA
* * ** * *
33776159 TCCGCTCCACTGCAACTTCAGGGAGATAAGAT-TGGTTTCTTCTGTCTGCTCCACTACAACTTCA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGGTTT-TT-AATCCGCTCCACTGCAACTTCA
33776223 -AGAAGATAAGACTGGATGCGA
64 GAG-AGATAAGACTGGATGCGA
* *
33776244 TCTGCTCCACTGCAACTTCAGAGAGTTAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTG-GTTTTTAATCCGCTCCACTGCAACTTCAG
*
33776309 GGAGATA
65 AGAGATA
33776316 GCATTGGTTT
Statistics
Matches: 319, Mismatches: 73, Indels: 45
0.73 0.17 0.10
Matches are distributed among these distances:
84 27 0.08
85 176 0.55
86 12 0.04
87 16 0.05
88 87 0.27
89 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGGTTTTTAATCCGCTCCACTGCAACTTCAGA
GAGATAAGACTGGATGCGA
Found at i:33776044 original size:129 final size:129
Alignment explanation
Indices: 33775738--33776328 Score: 934
Period size: 129 Copynumber: 4.6 Consensus size: 129
33775728 ATCTAATCTG
* * * * * * * *
33775738 CTGCAACTCCATAGGGATGAGATTTGTGGCTTTAATCCGATCCACTGTAACTTCAGGGAGATAGG
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGG
* * *
33775803 ATTGGTTTCTACTGTCTGCTCCACTGCAACTTCAGGGAGATAAG-CTGGATGCGATCTGCTCTA
66 ATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGAAGCGATCTGCTCTA
* *
33775866 CTGCAACTTCAGAGAGATAAGATCTGTGTTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGG
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGG
*
33775931 ATTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGAGAGATAAGACTGGAAGCGATCTGCTCTA
66 ATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGAAGCGATCTGCTCTA
* * *
33775995 CTGCAACTTCAGAGAGATAAGATCTGTGTTTTTAATCCGCTCCATTGCAATTTCAGGGAGATAGG
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGG
*
33776060 ATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGAAGCGATCTGCTCTA
66 ATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGAAGCGATCTGCTCTA
* *
33776124 CTGCAACTTTAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAG
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGG
* * *
33776189 ATTGGTTTCTTCTGTCTGCTCCACTACAACTTCA-AGAAGATAAGACTGGATGCGATCTGCTCCA
66 ATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGAG-AGATAAGACTGGAAGCGATCTGCTCTA
* *
33776253 CTGCAACTTCAGAGAGTTAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGC
1 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGG
33776318 ATTGGTTTCTT
66 ATTGGTTTCTT
33776329 TTGATCTGTC
Statistics
Matches: 429, Mismatches: 32, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
128 97 0.23
129 332 0.77
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (129 bp):
CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGG
ATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGGAAGCGATCTGCTCTA
Found at i:33787754 original size:106 final size:106
Alignment explanation
Indices: 33787567--33787973 Score: 568
Period size: 106 Copynumber: 3.9 Consensus size: 106
33787557 TAGATTTATG
** * * *
33787567 AGGATATTGGGCTATTTGATCGAACGAGAAATCGAAACCCAACACGTTAGGGCACGTTTTCTCGA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
* *
33787632 ATTTTCAAAC-TCAAAATATTGCTTTACTTTGAAATTTTAAA
66 ATTTCCAAACGT-AAAATATTGCCTTACTTTGAAATTTTAAA
* * * * *
33787673 ATGATATTTAGCTATTTGGTCGAATGAGAACTCGAAACCCGGCACGTTAGGGCACGTTTCCTCAA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
*
33787738 ATTTCCAAACGTAAAATATTGCCATACTTTGAAATTTTAAA
66 ATTTCCAAACGTAAAATATTGCCTTACTTTGAAATTTTAAA
* *
33787779 AGGATATTTAGCTA-TTGGTCGAACGAGAACTTGAAA-CCAGCACGTTAGGGCACGTTTCCTCGA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
* *
33787842 ATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTATAAA
66 ATTTCCAAACGTAAAATATTGCCTTACTTTGAAATTTTAAA
* * *
33787883 AGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTTGA
1 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
* * * *
33787948 ATTTCTAAATGCAAAATAATGCCTTA
66 ATTTCCAAACGTAAAATATTGCCTTA
33787974 TTTTAAAACT
Statistics
Matches: 269, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
104 76 0.28
105 40 0.15
106 152 0.57
107 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (106 bp):
AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTCCTCGA
ATTTCCAAACGTAAAATATTGCCTTACTTTGAAATTTTAAA
Found at i:33792708 original size:14 final size:15
Alignment explanation
Indices: 33792666--33792709 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
33792656 TCAATCATCC
33792666 CTCATCCATC-ATCT
1 CTCATCCATCTATCT
*
33792680 CTCATCCTTCTTATCT
1 CTCATCCATC-TATCT
33792696 CTCATCC-TCTATCT
1 CTCATCCATCTATCT
33792710 TCACTCTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 14 0.52
15 2 0.07
16 11 0.41
ACGTcount: A:0.16, C:0.41, G:0.00, T:0.43
Consensus pattern (15 bp):
CTCATCCATCTATCT
Found at i:33793858 original size:23 final size:23
Alignment explanation
Indices: 33793832--33794018 Score: 168
Period size: 23 Copynumber: 8.2 Consensus size: 23
33793822 ATATGTCCTA
33793832 TGATGCCTTTTTGGCATATTCTG
1 TGATGCCTTTTTGGCATATTCTG
*
33793855 TGATGCCTTTGTT-GCATATTTTG
1 TGATGCCTTT-TTGGCATATTCTG
* *
33793878 TAATGCCTTTTTGTCATATTCTG
1 TGATGCCTTTTTGGCATATTCTG
*
33793901 TGATGCCTTTGTT-GCATATTTTG
1 TGATGCCTTT-TTGGCATATTCTG
* *
33793924 TGAT--CTGTTTGTGGCATATTTTT
1 TGATGCCT-TTT-TGGCATATTCTG
* * *
33793947 TTATGCCTTTGTGGCGTATTCTG
1 TGATGCCTTTTTGGCATATTCTG
** *
33793970 TGATGCCTTCATGGCGTATTCTG
1 TGATGCCTTTTTGGCATATTCTG
** *
33793993 TGATGCCTTCATAGCATATT-TG
1 TGATGCCTTTTTGGCATATTCTG
33794015 TGAT
1 TGAT
33794019 ATCATTCTGG
Statistics
Matches: 138, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
21 3 0.02
22 11 0.08
23 116 0.84
24 6 0.04
25 2 0.01
ACGTcount: A:0.14, C:0.16, G:0.21, T:0.49
Consensus pattern (23 bp):
TGATGCCTTTTTGGCATATTCTG
Found at i:33793901 original size:46 final size:46
Alignment explanation
Indices: 33793832--33794018 Score: 209
Period size: 46 Copynumber: 4.1 Consensus size: 46
33793822 ATATGTCCTA
33793832 TGATGCCTTTTTGGCATATTCTGTGATGCCTTTGTTGCATATTTTG
1 TGATGCCTTTTTGGCATATTCTGTGATGCCTTTGTTGCATATTTTG
* *
33793878 TAATGCCTTTTTGTCATATTCTGTGATGCCTTTGTTGCATATTTTG
1 TGATGCCTTTTTGGCATATTCTGTGATGCCTTTGTTGCATATTTTG
* * * * * *
33793924 TGAT--CTGTTTGTGGCATATTTTTTTATGCCTTTGTGGCGTATTCTG
1 TGATGCCT-TTT-TGGCATATTCTGTGATGCCTTTGTTGCATATTTTG
** * ** *
33793970 TGATGCCTTCATGGCGTATTCTGTGATGCCTTCATAGCATA-TTTG
1 TGATGCCTTTTTGGCATATTCTGTGATGCCTTTGTTGCATATTTTG
33794015 TGAT
1 TGAT
33794019 ATCATTCTGG
Statistics
Matches: 116, Mismatches: 21, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
44 2 0.02
45 10 0.09
46 101 0.87
47 1 0.01
48 2 0.02
ACGTcount: A:0.14, C:0.16, G:0.21, T:0.49
Consensus pattern (46 bp):
TGATGCCTTTTTGGCATATTCTGTGATGCCTTTGTTGCATATTTTG
Found at i:33793943 original size:69 final size:69
Alignment explanation
Indices: 33793832--33794001 Score: 209
Period size: 69 Copynumber: 2.5 Consensus size: 69
33793822 ATATGTCCTA
* * *
33793832 TGATGCCTTTTTGGCATATTCTGTGATGCCTTTGTTGCATATTTTGTAATGCCTTTTTGTCATAT
1 TGATGCCTTTTTGGCATATTCTGTGATGCCTTTGTGGCATATTTTGTAATGCCTTTGTGGCATAT
33793897 TCTG
66 TCTG
* * * * *
33793901 TGATGCCTTTGTT-GCATATTTTGTGAT-CTGTTTGTGGCATATTTTTTTATGCCTTTGTGGCGT
1 TGATGCCTTT-TTGGCATATTCTGTGATGC-CTTTGTGGCATATTTTGTAATGCCTTTGTGGCAT
33793964 ATTCTG
64 ATTCTG
** *
33793970 TGATGCCTTCATGGCGTATTCTGTGATGCCTT
1 TGATGCCTTTTTGGCATATTCTGTGATGCCTT
33794002 CATAGCATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
68 2 0.02
69 79 0.94
70 3 0.04
ACGTcount: A:0.13, C:0.16, G:0.22, T:0.49
Consensus pattern (69 bp):
TGATGCCTTTTTGGCATATTCTGTGATGCCTTTGTGGCATATTTTGTAATGCCTTTGTGGCATAT
TCTG
Found at i:33801013 original size:35 final size:35
Alignment explanation
Indices: 33800962--33801032 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
33800952 TTTTCCTACA
33800962 CTCTGTACATGCCAATCAACCACCAACCAAGTCCT
1 CTCTGTACATGCCAATCAACCACCAACCAAGTCCT
*
33800997 CTCTGTACATGTCAATCAACCACCAACCAAGTCCT
1 CTCTGTACATGCCAATCAACCACCAACCAAGTCCT
33801032 C
1 C
33801033 CCCAAAGGCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.39, G:0.08, T:0.21
Consensus pattern (35 bp):
CTCTGTACATGCCAATCAACCACCAACCAAGTCCT
Found at i:33803781 original size:40 final size:40
Alignment explanation
Indices: 33803732--33804022 Score: 334
Period size: 40 Copynumber: 7.3 Consensus size: 40
33803722 AAGCACACAG
* *
33803732 GTGCTCCTATTCGTACTTCGGTACCCCTGAATGCACATTC
1 GTGCCCCTATTTGTACTTCGGTACCCCTGAATGCACATTC
* *
33803772 GTGCCCCTATTTGTACTTCAGTACCCCTGAATACACATTC
1 GTGCCCCTATTTGTACTTCGGTACCCCTGAATGCACATTC
* * *
33803812 GTGCCCCTGTTTGTACTTCAGTACCCCTGAATGTACATTC
1 GTGCCCCTATTTGTACTTCGGTACCCCTGAATGCACATTC
* * *
33803852 GTGCCCCTGTTTGTACATCGGTACCCCTAAATGCACATTC
1 GTGCCCCTATTTGTACTTCGGTACCCCTGAATGCACATTC
* * * * *
33803892 GTG-CCCTTTTTTTACTTTGGTACTCTTGAATGCACATAT-
1 GTGCCCCTATTTGTACTTCGGTACCCCTGAATGCACAT-TC
* ** ** **
33803931 GAGCCATTGCTTGTACTTCAATACCCCTGAATGCACATTC
1 GTGCCCCTATTTGTACTTCGGTACCCCTGAATGCACATTC
* * *
33803971 GTGCCCCTGTTTGTACTTTGGTACCCCTAAATGCACATTC
1 GTGCCCCTATTTGTACTTCGGTACCCCTGAATGCACATTC
33804011 GTGCCCCTATTT
1 GTGCCCCTATTT
33804023 TAGTGATCAA
Statistics
Matches: 210, Mismatches: 38, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
39 30 0.14
40 180 0.86
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (40 bp):
GTGCCCCTATTTGTACTTCGGTACCCCTGAATGCACATTC
Found at i:33803798 original size:20 final size:19
Alignment explanation
Indices: 33803737--33803880 Score: 60
Period size: 20 Copynumber: 7.2 Consensus size: 19
33803727 CACAGGTGCT
*
33803737 CCTATTCGTACTTCGGTACC
1 CCTATTTGTACTTC-GTACC
* * *
33803757 CCTGA-ATGCACATTCGTGCC
1 CCT-ATTTGTAC-TTCGTACC
33803777 CCTATTTGTACTTCAGTACC
1 CCTATTTGTACTTC-GTACC
* ** *
33803797 CCTGA-ATACACATTCGTGCC
1 CCT-ATTTGTAC-TTCGTACC
*
33803817 CCTGTTTGTACTTCAGTACC
1 CCTATTTGTACTTC-GTACC
* *
33803837 CCTGA-ATGTACATTCGTGCC
1 CCT-ATTTGTAC-TTCGTACC
* *
33803857 CCTGTTTGTACATCGGTACC
1 CCTATTTGTACTTC-GTACC
33803877 CCTA
1 CCTA
33803881 AATGCACATT
Statistics
Matches: 88, Mismatches: 24, Indels: 24
0.65 0.18 0.18
Matches are distributed among these distances:
19 9 0.10
20 68 0.77
21 11 0.12
ACGTcount: A:0.19, C:0.33, G:0.16, T:0.33
Consensus pattern (19 bp):
CCTATTTGTACTTCGTACC
Found at i:33803979 original size:20 final size:20
Alignment explanation
Indices: 33803954--33804018 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
33803944 TACTTCAATA
33803954 CCCCTGAATGCACATTCGTG
1 CCCCTGAATGCACATTCGTG
** * * * *
33803974 CCCCTGTTTGTACTTTGGTA
1 CCCCTGAATGCACATTCGTG
*
33803994 CCCCTAAATGCACATTCGTG
1 CCCCTGAATGCACATTCGTG
33804014 CCCCT
1 CCCCT
33804019 ATTTTAGTGA
Statistics
Matches: 32, Mismatches: 13, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.17, C:0.35, G:0.17, T:0.31
Consensus pattern (20 bp):
CCCCTGAATGCACATTCGTG
Found at i:33804024 original size:119 final size:119
Alignment explanation
Indices: 33803744--33804024 Score: 393
Period size: 119 Copynumber: 2.4 Consensus size: 119
33803734 GCTCCTATTC
*
33803744 GTACTTCGGTACCCCTGAATGCACATTCGTGCCCCTATTTGTACTTCAGTACCCCTGAATACACA
1 GTACTTCGGTACCCCTAAATGCACATTCGTGCCCCTATTT-TACTTCAGTACCCCTGAATACACA
* * * * *
33803809 TTCGTGCCCCTGTTTGTACTTCAGTACCCCTGAATGTACATTCGTGCCCCTGTTT
65 TTCGAGCCACTGCTTGTACTTCAATACCCCTGAATGCACATTCGTGCCCCTGTTT
* * * ** * * *
33803864 GTACATCGGTACCCCTAAATGCACATTCGTGCCCTTTTTTTACTTTGGTACTCTTGAATGCACAT
1 GTACTTCGGTACCCCTAAATGCACATTCGTGCCCCTATTTTACTTCAGTACCCCTGAATACACAT
*
33803929 AT-GAGCCATTGCTTGTACTTCAATACCCCTGAATGCACATTCGTGCCCCTGTTT
66 -TCGAGCCACTGCTTGTACTTCAATACCCCTGAATGCACATTCGTGCCCCTGTTT
*
33803983 GTACTTTGGTACCCCTAAATGCACATTCGTGCCCCTATTTTA
1 GTACTTCGGTACCCCTAAATGCACATTCGTGCCCCTATTTTA
33804025 GTGATCAAAT
Statistics
Matches: 141, Mismatches: 19, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
119 104 0.74
120 37 0.26
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.35
Consensus pattern (119 bp):
GTACTTCGGTACCCCTAAATGCACATTCGTGCCCCTATTTTACTTCAGTACCCCTGAATACACAT
TCGAGCCACTGCTTGTACTTCAATACCCCTGAATGCACATTCGTGCCCCTGTTT
Found at i:33808693 original size:20 final size:20
Alignment explanation
Indices: 33808668--33808720 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
33808658 CATATACATG
33808668 CCCCTGTTTGTAC-TTCAGTA
1 CCCCTGTTTGTACATTC-GTA
** * *
33808688 CCCCTGAATGCACATTCGTG
1 CCCCTGTTTGTACATTCGTA
33808708 CCCCTGTTTGTAC
1 CCCCTGTTTGTAC
33808721 CTTGTTACCC
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.15, C:0.34, G:0.17, T:0.34
Consensus pattern (20 bp):
CCCCTGTTTGTACATTCGTA
Found at i:33808817 original size:39 final size:40
Alignment explanation
Indices: 33808666--33808880 Score: 143
Period size: 40 Copynumber: 5.4 Consensus size: 40
33808656 TCCATATACA
* *
33808666 TGCCCCTGTTTGTACTTCAG-TACCCCTGAATGCACATTCG
1 TGCCCCTCTTTGTACTT-AGATACCCCTAAATGCACATTCG
* * * * *
33808706 TGCCCCTGTTTGTACCTT-GTTACCCTTGAAA-GCTCATTTG
1 TGCCCCTCTTTGTA-CTTAGATACCCCT-AAATGCACATTCG
* * * *** * *
33808746 TGCCCTTGTTTTTACTTCAG-TACTGTTGAATGCCCATTC-
1 TGCCCCTCTTTGTACTT-AGATACCCCTAAATGCACATTCG
**
33808785 TTTCCCTCTTTGTACTTAGATACCCCTAAATGCACATTCG
1 TGCCCCTCTTTGTACTTAGATACCCCTAAATGCACATTCG
* * * * * *
33808825 TGCCCCTGTTTGTACTTCGGTACCCCTAAGTGCATATACG
1 TGCCCCTCTTTGTACTTAGATACCCCTAAATGCACATTCG
*
33808865 TGCCCCTGTTTGTACT
1 TGCCCCTCTTTGTACT
33808881 CCTGAAGGTA
Statistics
Matches: 138, Mismatches: 29, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 98 0.71
41 6 0.04
ACGTcount: A:0.17, C:0.29, G:0.16, T:0.38
Consensus pattern (40 bp):
TGCCCCTCTTTGTACTTAGATACCCCTAAATGCACATTCG
Found at i:33808841 original size:79 final size:80
Alignment explanation
Indices: 33808666--33808879 Score: 220
Period size: 79 Copynumber: 2.7 Consensus size: 80
33808656 TCCATATACA
* *
33808666 TGCCCCTGTTTGTACTTCAGTACCCCTGAATGCACATTCGTGCCCCTGTTTGTACCTTGTTACCC
1 TGCCCCTGTTTGTACTTCAGTACCCCTGAATGCACATTCGTGCCCCTCTTTGTACCTTGATACCC
* * *
33808731 TTGAAAGCTCATTTG
66 CTGAAAGCACATTCG
* * *** * **
33808746 TGCCCTTGTTTTTACTTCAGTACTGTTGAATGCCCATTC-TTTCCCTCTTTGTA-CTTAGATACC
1 TGCCCCTGTTTGTACTTCAGTACCCCTGAATGCACATTCGTGCCCCTCTTTGTACCTT-GATACC
33808809 CCT-AAATGCACATTCG
65 CCTGAAA-GCACATTCG
* * * *
33808825 TGCCCCTGTTTGTACTTCGGTACCCCT-AAGTGCATATACGTGCCCCTGTTTGTAC
1 TGCCCCTGTTTGTACTTCAGTACCCCTGAA-TGCACATTCGTGCCCCTCTTTGTAC
33808880 TCCTGAAGGT
Statistics
Matches: 104, Mismatches: 25, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
78 8 0.08
79 52 0.50
80 44 0.42
ACGTcount: A:0.17, C:0.29, G:0.16, T:0.37
Consensus pattern (80 bp):
TGCCCCTGTTTGTACTTCAGTACCCCTGAATGCACATTCGTGCCCCTCTTTGTACCTTGATACCC
CTGAAAGCACATTCG
Found at i:33820302 original size:21 final size:20
Alignment explanation
Indices: 33820271--33820322 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
33820261 TATTTTGCAT
33820271 AAATTAAAAATAAAGTAATA
1 AAATTAAAAATAAAGTAATA
33820291 AAATTCAAAAATAAAGTAA-A
1 AAATT-AAAAATAAAGTAATA
33820311 AACATATAAAAA
1 AA-AT-TAAAAA
33820323 CACTAGAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.28
21 20 0.69
22 1 0.03
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.21
Consensus pattern (20 bp):
AAATTAAAAATAAAGTAATA
Found at i:33830129 original size:51 final size:50
Alignment explanation
Indices: 33830049--33830237 Score: 184
Period size: 51 Copynumber: 3.7 Consensus size: 50
33830039 ATACCCGGTT
* * *
33830049 CACATAGTAGCCTGCATATAGTACTACACATGTGACCATTTTCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCCGATA
* * * * * *
33830100 CACGTAGTAGCCTACACATAGTACTACACACGTGATCGA-AGCTATTCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCCGATA
* * * * **
33830151 CGCATAGTAGCCTTCACATAGTACTACATATGAAACC-TATCATTCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCCGATA
*
33830201 CACCTAGTAGCCTGCACATAGTACTACACACGTGACC
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC
33830238 TAGCAACTTC
Statistics
Matches: 107, Mismatches: 27, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
49 1 0.01
50 39 0.36
51 65 0.61
52 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCCGATA
Found at i:33830227 original size:101 final size:101
Alignment explanation
Indices: 33830051--33830235 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 101
33830041 ACCCGGTTCA
* ** * *
33830051 CATAGTAGCCTGCATATAGTACTACACATGTGACCATTTTCATCCGATACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGAAACCA-TATCATCCGATACACCTAGTAGCCTACA
33830116 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
65 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
* * *
33830153 CATAGTAGCCTTCACATAGTACTACATATGAAACC-TATCATTCCGATACACCTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGAAACCATATCA-TCCGATACACCTAGTAGCCTACA
33830217 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
33830236 CCTAGCAACT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.54
102 30 0.41
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGAAACCATATCATCCGATACACCTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAGCTATTCGGTACG
Found at i:33846017 original size:18 final size:18
Alignment explanation
Indices: 33845994--33846031 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
33845984 GGGGTGTTCC
33845994 AAAGGTTCACTTA-AAGAA
1 AAAGGTTCA-TTACAAGAA
*
33846012 AAAGGTTTATTACAAGAA
1 AAAGGTTCATTACAAGAA
33846030 AA
1 AA
33846032 CCGAGATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.53, C:0.08, G:0.16, T:0.24
Consensus pattern (18 bp):
AAAGGTTCATTACAAGAA
Found at i:33849201 original size:40 final size:37
Alignment explanation
Indices: 33849153--33849263 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 37
33849143 CATTTGGAAA
33849153 AAAAACGCCGCTACAAATCGAGCATTAGCGGCGCTTTAC
1 AAAAACGCCGCTA-AAATCGAGCATTAGCGGCGC-TTAC
* *
33849192 ATAAAACGCCGCTAAAGATCAAGCATTAGCGGCGCTTCC
1 A-AAAACGCCGCTAAA-ATCGAGCATTAGCGGCGCTTAC
33849231 AAGAAAGCGCCGCTAAAAAT-GAGCATTAGCGGC
1 AA-AAA-CGCCGCT-AAAATCGAGCATTAGCGGC
33849264 ATTTTTTGGA
Statistics
Matches: 64, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
38 1 0.02
39 22 0.34
40 38 0.59
41 3 0.05
ACGTcount: A:0.35, C:0.26, G:0.23, T:0.16
Consensus pattern (37 bp):
AAAAACGCCGCTAAAATCGAGCATTAGCGGCGCTTAC
Found at i:33849394 original size:41 final size:41
Alignment explanation
Indices: 33849337--33849632 Score: 349
Period size: 41 Copynumber: 7.2 Consensus size: 41
33849327 TGTTAGTGAT
*
33849337 GTTTTTGAAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
1 GTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
* * * *
33849378 GTTTTTCAAGTAGCGCCGCTAATGCTCGGGGTTTTAGCAGC
1 GTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
* * * * *
33849419 GTTTGTGAAGAAGCGCCACAAATGCTCGGGGATTTAACGGC
1 GTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
* * *
33849460 GTTTTTGAAGAAGCGCCGCTAATGCTTGGGGCTTTAACAGC
1 GTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
* * * *
33849501 GTTTTTGAAGAAGCGCCACTAATGCTCGGAGCTTTGGTGGC
1 GTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
* * * * *
33849542 TTTTTTGAAAAAGCGACGCTAATGCTCTGGACTTTAGCGGC
1 GTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
* * * *
33849583 GTTTTTGAAAAAGCACTGCTAATGCTCGGGGGTTTAGCGGC
1 GTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
*
33849624 GATTTTGAA
1 GTTTTTGAA
33849633 AAAGTGCCAC
Statistics
Matches: 212, Mismatches: 43, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 212 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (41 bp):
GTTTTTGAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGC
Found at i:33850062 original size:14 final size:15
Alignment explanation
Indices: 33850027--33850066 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
33850017 TAGTGTAAGG
*
33850027 TTTAGGGAGTATGGA
1 TTTAGGGATTATGGA
33850042 TTTAGGGATTATGGA
1 TTTAGGGATTATGGA
33850057 -TTAGGGATTA
1 TTTAGGGATTA
33850067 CGATTTAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 10 0.42
15 14 0.58
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.38
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:33850112 original size:34 final size:34
Alignment explanation
Indices: 33850074--33850145 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
33850064 TTACGATTTA
*
33850074 AGGGTTGGGATTTAAGGTTTAAGGGTTAGGGGTT
1 AGGGTTGAGATTTAAGGTTTAAGGGTTAGGGGTT
33850108 AGGGTTGAGATTTAAGGTTTAAGGGTTAGGGGTT
1 AGGGTTGAGATTTAAGGTTTAAGGGTTAGGGGTT
33850142 AGGG
1 AGGG
33850146 GTTAGAGGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.33
Consensus pattern (34 bp):
AGGGTTGAGATTTAAGGTTTAAGGGTTAGGGGTT
Found at i:33850113 original size:21 final size:21
Alignment explanation
Indices: 33850043--33850113 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
33850033 GAGTATGGAT
* * *
33850043 TTAGGGATTATGGATTAGGGA
1 TTAGGGTTTAAGGGTTAGGGA
* *
33850064 TTACGATTTAAGGGTT-GGGA
1 TTAGGGTTTAAGGGTTAGGGA
* *
33850084 TTTAAGGTTTAAGGGTTAGGGG
1 -TTAGGGTTTAAGGGTTAGGGA
33850106 TTAGGGTT
1 TTAGGGTT
33850114 GAGATTTAAG
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
20 4 0.10
21 32 0.82
22 3 0.08
ACGTcount: A:0.24, C:0.01, G:0.38, T:0.37
Consensus pattern (21 bp):
TTAGGGTTTAAGGGTTAGGGA
Found at i:33850193 original size:15 final size:16
Alignment explanation
Indices: 33850175--33850205 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
33850165 GGGTTAAGAG
33850175 TTAGGGATTTA-GGGT
1 TTAGGGATTTATGGGT
33850190 TTAGGGATTTATGGGT
1 TTAGGGATTTATGGGT
33850206 CGAGTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.19, C:0.00, G:0.39, T:0.42
Consensus pattern (16 bp):
TTAGGGATTTATGGGT
Found at i:33850217 original size:27 final size:27
Alignment explanation
Indices: 33850183--33850244 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
33850173 AGTTAGGGAT
*
33850183 TTAGGGTTTAGGGATTTATGGGTCGAG
1 TTAGGGTTTAGGGATTTAGGGGTCGAG
* *
33850210 TTAGGGTTTTGGGATTTAGGGGTCGGG
1 TTAGGGTTTAGGGATTTAGGGGTCGAG
33850237 TTAGGGTT
1 TTAGGGTT
33850245 AAGGTTTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.15, C:0.03, G:0.44, T:0.39
Consensus pattern (27 bp):
TTAGGGTTTAGGGATTTAGGGGTCGAG
Found at i:33850259 original size:7 final size:7
Alignment explanation
Indices: 33850084--33850264 Score: 54
Period size: 7 Copynumber: 25.3 Consensus size: 7
33850074 AGGGTTGGGA
*
33850084 TTTAAGG
1 TTTAGGG
33850091 TTTAAGGG
1 TTT-AGGG
33850099 -TTAGGG
1 TTTAGGG
*
33850105 GTTAGGG
1 TTTAGGG
* *
33850112 TTGA-GA
1 TTTAGGG
*
33850118 TTTAAGG
1 TTTAGGG
33850125 TTTAAGGG
1 TTT-AGGG
33850133 -TTAGGG
1 TTTAGGG
*
33850139 GTTAGGG
1 TTTAGGG
*
33850146 GTTAGAGG
1 TTTAG-GG
*
33850154 -ATAGAGG
1 TTTAG-GG
*
33850161 TTAAGGG
1 TTTAGGG
* *
33850168 TTAAGAG
1 TTTAGGG
33850175 -TTAGGG
1 TTTAGGG
33850181 ATTTAGGG
1 -TTTAGGG
33850189 TTTAGGG
1 TTTAGGG
33850196 ATTTATGGG
1 -TTTA-GGG
33850205 TCGAGTTAGGG
1 T----TTAGGG
*
33850216 TTTTGGG
1 TTTAGGG
33850223 ATTTAGGG
1 -TTTAGGG
* *
33850231 -GTCGGG
1 TTTAGGG
33850237 -TTAGGG
1 TTTAGGG
*
33850243 -TTAAGG
1 TTTAGGG
33850249 TTTAGGG
1 TTTAGGG
*
33850256 TTTAAGG
1 TTTAGGG
33850263 TT
1 TT
33850265 AGATTAGTTA
Statistics
Matches: 135, Mismatches: 22, Indels: 34
0.71 0.12 0.18
Matches are distributed among these distances:
6 29 0.21
7 69 0.51
8 27 0.20
9 3 0.02
11 4 0.03
12 3 0.02
ACGTcount: A:0.22, C:0.01, G:0.41, T:0.35
Consensus pattern (7 bp):
TTTAGGG
Found at i:33854539 original size:43 final size:42
Alignment explanation
Indices: 33854482--33854711 Score: 187
Period size: 43 Copynumber: 5.4 Consensus size: 42
33854472 TAAAAGAATT
* * *
33854482 TTTTTAGCGACGTTTGT-GAAAAAGCGTCGCTAAAAGTCATT
1 TTTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAAGTCATA
* *
33854523 TCTTTATAGCGGCGTTTGTA-ATAGAAGCGCCGCTAAAATTCACTA
1 T-TTT-TAGCGGCGTTTGTAGA-AAAAGCGCCGCTAAAAGTCA-TA
* * * * *
33854568 TTTTTAGCGGCGTTTGTGGCAAAAGCACAGCTAAAGGTCATGA
1 TTTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAAGTCAT-A
* * * * *
33854611 TCTTTAGCGGCGTTTGTAGTAGAAGCGCCGCTAAAGGCCATGA
1 TTTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAAGTCAT-A
* * * *
33854654 TCTTTAGCAGCGTTTGTAGTAGAAA-CGCCGCTAAAGGTCATGA
1 TTTTTAGCGGCGTTTGTAG-AAAAAGCGCCGCTAAAAGTCAT-A
*
33854697 TCTTTAGCGGCGTTT
1 TTTTTAGCGGCGTTT
33854712 TTTCACATAA
Statistics
Matches: 156, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 127 0.81
44 22 0.14
45 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (42 bp):
TTTTTAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAAGTCATA
Found at i:33854602 original size:87 final size:85
Alignment explanation
Indices: 33854482--33854711 Score: 236
Period size: 86 Copynumber: 2.7 Consensus size: 85
33854472 TAAAAGAATT
* *
33854482 TTTTTAGCGACGTTTGTGAAAAAGCGTCGCTAAAAGTCAT-TTCTTTATAGCGGCGTTTGTAATA
1 TTTTTAGCGACGTTTGTGAAAAAGCGACGCTAAAAGTCATGATC-TT-TAGCGGCGTTTGTAATA
33854546 GAAGCGCCGCTAAAATTCACTA
64 GAAGCGCCGCTAAAATTCACTA
* * * *
33854568 TTTTTAGCGGCGTTTGTGGCAAAAGC-ACAGCTAAAGGTCATGATCTTTAGCGGCGTTTGTAGTA
1 TTTTTAGCGACGTTTGT-GAAAAAGCGAC-GCTAAAAGTCATGATCTTTAGCGGCGTTTGTAATA
***
33854632 GAAGCGCCGCTAAAGGCCA-TGA
64 GAAGCGCCGCTAAAATTCACT-A
* * * *
33854654 TCTTTAGC-AGCGTTTGTAGTAGAAA-CGCCGCTAAAGGTCATGATCTTTAGCGGCGTTT
1 TTTTTAGCGA-CGTTTGT-G-AAAAAGCGACGCTAAAAGTCATGATCTTTAGCGGCGTTT
33854712 TTTCACATAA
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
85 1 0.01
86 95 0.78
87 24 0.20
88 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (85 bp):
TTTTTAGCGACGTTTGTGAAAAAGCGACGCTAAAAGTCATGATCTTTAGCGGCGTTTGTAATAGA
AGCGCCGCTAAAATTCACTA
Found at i:33868074 original size:50 final size:51
Alignment explanation
Indices: 33867970--33868155 Score: 151
Period size: 50 Copynumber: 3.6 Consensus size: 51
33867960 GATGAGACCA
** *
33867970 CATGTAAGACCATGTCTGGGACATGACATTGGCATTATTGAGGTTATGAAAGGTCT
1 CATGTAAGACCATGTCTGGGACATGACATTGG---TACCGAGG--ATGAGAGGTCT
* *
33868026 CATGTAAGACCATGTCTGGGACATGGCATTGGTACCGA-GATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGACATTGGTACCGAGGATGAGAGGTCT
** * * * * * * **
33868076 CCCGTAAGACCATCTCTTGGACATGGCATGGGCACCGATG-TGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGACATTGGTACCGAGGATGAGAGGTCT
* * *
33868126 CATGTAAGACCGTATCTGGGATATGACATT
1 CATGTAAGACCATGTCTGGGACATGACATT
33868156 TGCAGTACAG
Statistics
Matches: 107, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
50 70 0.65
51 1 0.01
52 1 0.01
53 4 0.04
56 31 0.29
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (51 bp):
CATGTAAGACCATGTCTGGGACATGACATTGGTACCGAGGATGAGAGGTCT
Found at i:33875635 original size:50 final size:50
Alignment explanation
Indices: 33875484--33875675 Score: 145
Period size: 50 Copynumber: 3.7 Consensus size: 50
33875474 GGGATGAGAC
* ** *
33875484 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAAAGGT
1 CCCACGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA---TATGAGAGGT
* * * *
33875540 CCCACATAAGACCATGTCTAGGATATGG-AGTTGGTACC-ATGATGAGAGGT
1 CCCACGTAAGACCATGTCTGGGACATGGCA-TTGGCACCGAT-ATGAGAGGT
* * **
33875590 CCCCCGTAAGACCATGTCTGGGACATGGCATAGGCACCGATATGAGAACT
1 CCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGGT
** * * *
33875640 CTTATGTAAGACCATATCTGGGACATGGCTTTGGCA
1 CCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
33875676 TTTTATTATC
Statistics
Matches: 109, Mismatches: 23, Indels: 14
0.75 0.16 0.10
Matches are distributed among these distances:
49 1 0.01
50 74 0.68
51 3 0.03
52 1 0.01
53 1 0.01
55 1 0.01
56 28 0.26
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (50 bp):
CCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGGT
Found at i:33875903 original size:20 final size:20
Alignment explanation
Indices: 33875878--33875916 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
33875868 TGAGTTATTT
33875878 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
33875898 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
33875917 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:33881919 original size:42 final size:42
Alignment explanation
Indices: 33881860--33881947 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
33881850 TTTTATGGTT
*
33881860 TAATCTTTTAAAAAAAATCTAACAATGGTTTCACTTTTGCAA
1 TAATCTTTTAAAAAAAATCTAACAATGGTCTCACTTTTGCAA
33881902 TAATCTTTTAAAAAAAATCTAACAATGGTCTCACTTTTGCAA
1 TAATCTTTTAAAAAAAATCTAACAATGGTCTCACTTTTGCAA
33881944 TAAT
1 TAAT
33881948 GTGTAGACAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.38
Consensus pattern (42 bp):
TAATCTTTTAAAAAAAATCTAACAATGGTCTCACTTTTGCAA
Found at i:33884237 original size:22 final size:22
Alignment explanation
Indices: 33884209--33884254 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
33884199 TAATCGTACG
33884209 TACAATTTGAAAAGTGAAGATT
1 TACAATTTGAAAAGTGAAGATT
33884231 TACAATTTGAAAAGTGAAGATT
1 TACAATTTGAAAAGTGAAGATT
33884253 TA
1 TA
33884255 GTTTTAGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.33
Consensus pattern (22 bp):
TACAATTTGAAAAGTGAAGATT
Found at i:33892311 original size:23 final size:23
Alignment explanation
Indices: 33892284--33892382 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
33892274 AGTGTTATTG
*
33892284 ATCAGTGGTAGCTTCGACTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
33892307 TTCAGTGGTTGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
33892330 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
33892353 TTCAGTGGTAGCTTCGGTTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
33892376 ATCAGTG
1 ATCAGTG
33892383 TGGCACTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 68 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.34
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:33892351 original size:46 final size:46
Alignment explanation
Indices: 33892284--33892382 Score: 171
Period size: 46 Copynumber: 2.2 Consensus size: 46
33892274 AGTGTTATTG
*
33892284 ATCAGTGGTAGCTTCGACTACATTTCAGTGGTTGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGACTACATTTCAGTGGTAGCTTCGGCTACAT
* *
33892330 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGTTACAT
1 ATCAGTGGTAGCTTCGACTACATTTCAGTGGTAGCTTCGGCTACAT
33892376 ATCAGTG
1 ATCAGTG
33892383 TGGCACTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.34
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGACTACATTTCAGTGGTAGCTTCGGCTACAT
Found at i:33894313 original size:45 final size:44
Alignment explanation
Indices: 33894237--33894408 Score: 197
Period size: 45 Copynumber: 3.9 Consensus size: 44
33894227 ACAGATACAC
* *
33894237 GGTGG-ATCAGCACACAGC-ACCACCCTT-ATAGTCAATGATTCT
1 GGTGGAATCAGCACACAGCAACCA-CCTTCATAATCAATGATACT
* * *
33894279 AGGTGGAATCAGCACATAGCAACCACCTTCATAGTCAATGGTACCT
1 -GGTGGAATCAGCACACAGCAACCACCTTCATAATCAATGATA-CT
* * *
33894325 GGTGGAATCAGCACACATCAACCACCTTTATAATCAATGATACCC
1 GGTGGAATCAGCACACAGCAACCACCTTCATAATCAATGATA-CT
* *
33894370 GGTGGAATCAGCACACATCAACCACTTTCATAATCAATG
1 GGTGGAATCAGCACACAGCAACCACCTTCATAATCAATG
33894409 GTACCCGGTA
Statistics
Matches: 114, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
43 5 0.04
44 16 0.14
45 91 0.80
46 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (44 bp):
GGTGGAATCAGCACACAGCAACCACCTTCATAATCAATGATACT
Found at i:33894394 original size:90 final size:88
Alignment explanation
Indices: 33894237--33894413 Score: 246
Period size: 90 Copynumber: 2.0 Consensus size: 88
33894227 ACAGATACAC
* * * *
33894237 GGTGGATCAGCACACAGCACCACCCTTATAGTCAATGATTCTAGGTGGAATCAGCACATAGCAAC
1 GGTGGATCAGCACACAGCACCACCCTTATAATCAATGATACCAGGTGGAATCAGCACACAGCAAC
*
33894302 CACCTTCATAGTCAATGGTACCT
66 CACCTTCATAATCAATGGTACCT
* * * *
33894325 GGTGGAATCAGCACACATCAACCACCTTTATAATCAATGATACCCGGTGGAATCAGCACACATCA
1 GGTGG-ATCAGCACACAGC-ACCACCCTTATAATCAATGATACCAGGTGGAATCAGCACACAGCA
*
33894390 ACCACTTTCATAATCAATGGTACC
64 ACCACCTTCATAATCAATGGTACC
33894414 CGGTACACGT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 5 0.06
89 12 0.16
90 60 0.78
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (88 bp):
GGTGGATCAGCACACAGCACCACCCTTATAATCAATGATACCAGGTGGAATCAGCACACAGCAAC
CACCTTCATAATCAATGGTACCT
Found at i:33894414 original size:45 final size:45
Alignment explanation
Indices: 33894280--33894417 Score: 206
Period size: 45 Copynumber: 3.1 Consensus size: 45
33894270 AATGATTCTA
* * * * *
33894280 GGTGGAATCAGCACATAGCAACCACCTTCATAGTCAATGGTACCT
1 GGTGGAATCAGCACACATCAACCACTTTCATAATCAATGGTACCC
*
33894325 GGTGGAATCAGCACACATCAACCACCTTT-ATAATCAATGATACCC
1 GGTGGAATCAGCACACATCAACCA-CTTTCATAATCAATGGTACCC
33894370 GGTGGAATCAGCACACATCAACCACTTTCATAATCAATGGTACCC
1 GGTGGAATCAGCACACATCAACCACTTTCATAATCAATGGTACCC
33894415 GGT
1 GGT
33894418 ACACGTAGTA
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
44 4 0.05
45 77 0.92
46 3 0.04
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (45 bp):
GGTGGAATCAGCACACATCAACCACTTTCATAATCAATGGTACCC
Found at i:33896276 original size:23 final size:22
Alignment explanation
Indices: 33896233--33896290 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
33896223 AAAGGGTATC
* *
33896233 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
33896254 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
33896277 TACATATCATATCT
1 TACAAATCATATCT
33896291 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Done.