Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 108 of 211
Found at i:33896293 original size:19 final size:19
Alignment explanation
Indices: 33896246--33896343 Score: 115
Period size: 19 Copynumber: 4.8 Consensus size: 19
33896236 AAATTAAATC
*
33896246 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
33896266 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
33896288 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
33896309 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
33896328 TCTAAGATTACATATC
1 TCTAAGATTACATATC
33896344 CTCGAAGATT
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
19 32 0.47
21 18 0.26
22 7 0.10
23 11 0.16
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:33896306 original size:21 final size:21
Alignment explanation
Indices: 33896280--33896342 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
33896270 CTAAGATTAC
33896280 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
33896301 ATATCATATCTAAGATTGC--
1 ATATCATATCTAAGATTGCAT
*
33896320 ATATCATATCTAAGATTACAT
1 ATATCATATCTAAGATTGCAT
33896341 AT
1 AT
33896343 CCTCGAAGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 18 0.46
21 21 0.54
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:33900997 original size:90 final size:88
Alignment explanation
Indices: 33900840--33901016 Score: 246
Period size: 90 Copynumber: 2.0 Consensus size: 88
33900830 ACAGATACAC
* * *
33900840 GGTGGATCAGCACACAGCACCACCCTTATATTCAATGATACTAGGTGGAATCAGCACATAGCAAC
1 GGTGGATCAGCACACAGCACCACCCTTATAATCAATGATACCAGGTGGAATCAGCACACAGCAAC
*
33900905 CACCTTCATAGTCAATGGTACCT
66 CACCTTCATAATCAATGGTACCT
* * * * *
33900928 GGTGGAATCAGCACACATCAATCACCTTTATAATCAATGATACCCGGTGGAATCAGCACACATCA
1 GGTGG-ATCAGCACACAGC-ACCACCCTTATAATCAATGATACCAGGTGGAATCAGCACACAGCA
*
33900993 ACCACTTTCATAATCAATGGTACC
64 ACCACCTTCATAATCAATGGTACC
33901017 CGGTACACGT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
88 5 0.06
89 12 0.16
90 60 0.78
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.23
Consensus pattern (88 bp):
GGTGGATCAGCACACAGCACCACCCTTATAATCAATGATACCAGGTGGAATCAGCACACAGCAAC
CACCTTCATAATCAATGGTACCT
Found at i:33901017 original size:45 final size:45
Alignment explanation
Indices: 33900833--33901020 Score: 204
Period size: 45 Copynumber: 4.2 Consensus size: 45
33900823 AATAATAACA
* *
33900833 GATACACGGTGG-ATCAGCACACAGC-ACCACCCTTATATTCAAT
1 GATACCCGGTGGAATCAGCACACAGCAACCACCCTTATAATCAAT
** * *
33900876 GATACTAGGTGGAATCAGCACATAGCAACCA-CCTTCATAGTCAAT
1 GATACCCGGTGGAATCAGCACACAGCAACCACCCTT-ATAATCAAT
* * * * *
33900921 GGTACCTGGTGGAATCAGCACACATCAATCACCTTTATAATCAAT
1 GATACCCGGTGGAATCAGCACACAGCAACCACCCTTATAATCAAT
* *
33900966 GATACCCGGTGGAATCAGCACACATCAACCA-CTTTCATAATCAAT
1 GATACCCGGTGGAATCAGCACACAGCAACCACCCTT-ATAATCAAT
*
33901011 GGTACCCGGT
1 GATACCCGGT
33901021 ACACGTAGTA
Statistics
Matches: 124, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
43 10 0.08
44 20 0.16
45 91 0.73
46 3 0.02
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (45 bp):
GATACCCGGTGGAATCAGCACACAGCAACCACCCTTATAATCAAT
Found at i:33907368 original size:28 final size:28
Alignment explanation
Indices: 33907311--33907488 Score: 269
Period size: 28 Copynumber: 6.5 Consensus size: 28
33907301 TAAATTGTGC
*
33907311 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
33907338 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
33907366 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
33907393 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
33907421 AGCACTAA--GTGCGAGTTTG-CTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
33907446 AGCACTAAGTGTGCGAG-TTGATGTATAT
1 AGCACTAAGTGTGCGAGTTTGA-CTATGT
*
33907474 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33907489 GACTTAATAT
Statistics
Matches: 141, Mismatches: 4, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
25 14 0.10
26 14 0.10
27 50 0.35
28 63 0.45
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:33907375 original size:55 final size:55
Alignment explanation
Indices: 33907311--33907488 Score: 265
Period size: 55 Copynumber: 3.3 Consensus size: 55
33907301 TAAATTGTGC
33907311 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
33907366 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
33907421 AGCACTAA--GTGCGAGTTTG-CTATGTAGCACTAAGTGTGCGAG-TTGATGTATAT
1 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGA-CTATGT
*
33907474 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33907489 GACTTAATAT
Statistics
Matches: 114, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
52 4 0.04
53 40 0.35
54 3 0.03
55 67 0.59
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:33913079 original size:20 final size:20
Alignment explanation
Indices: 33913054--33913105 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 20
33913044 GAGCTTGGTG
33913054 AAAGTAAAGATGCTGAACAA
1 AAAGTAAAGATGCTGAACAA
33913074 AAAGTATTAAAGATGCTGAACAA
1 AAAG---TAAAGATGCTGAACAA
33913097 AAAGTAAAG
1 AAAGTAAAG
33913106 GTAATCCGCG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
20 9 0.31
23 20 0.69
ACGTcount: A:0.56, C:0.08, G:0.19, T:0.17
Consensus pattern (20 bp):
AAAGTAAAGATGCTGAACAA
Found at i:33913086 original size:23 final size:23
Alignment explanation
Indices: 33913058--33913102 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
33913048 TTGGTGAAAG
33913058 TAAAGATGCTGAACAAAAAGTAT
1 TAAAGATGCTGAACAAAAAGTAT
33913081 TAAAGATGCTGAACAAAAAGTA
1 TAAAGATGCTGAACAAAAAGTA
33913103 AAGGTAATCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.53, C:0.09, G:0.18, T:0.20
Consensus pattern (23 bp):
TAAAGATGCTGAACAAAAAGTAT
Found at i:33915414 original size:27 final size:27
Alignment explanation
Indices: 33915381--33915531 Score: 248
Period size: 27 Copynumber: 5.6 Consensus size: 27
33915371 TAAATTGTGC
*
33915381 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33915408 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
33915435 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
33915462 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
33915490 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
33915517 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33915532 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
27 93 0.78
28 26 0.22
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:33915500 original size:82 final size:81
Alignment explanation
Indices: 33915381--33915531 Score: 248
Period size: 82 Copynumber: 1.9 Consensus size: 81
33915371 TAAATTGTGC
*
33915381 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTG
33915446 TGCGAGTTGACTATGT
66 TGCGAGTTGACTATGT
* * * *
33915462 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGT
33915527 GTGCG
65 GTGCG
33915532 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
81 16 0.25
82 48 0.75
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTAAGTG
TGCGAGTTGACTATGT
Found at i:33915520 original size:55 final size:54
Alignment explanation
Indices: 33915381--33915531 Score: 248
Period size: 55 Copynumber: 2.8 Consensus size: 54
33915371 TAAATTGTGC
*
33915381 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
33915435 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
* * *
33915490 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
33915532 GACTTAATAT
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
54 43 0.47
55 48 0.53
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:33918196 original size:24 final size:23
Alignment explanation
Indices: 33918169--33918218 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
33918159 CTATAACAAT
* *
33918169 ATGCAGAAAATTCTGCCAGTGAAA
1 ATGCAGAAAA-GCTGCCAGTAAAA
*
33918193 ATGCAGACAAGCTGCCAGTAAAA
1 ATGCAGAAAAGCTGCCAGTAAAA
33918216 ATG
1 ATG
33918219 TGATAAATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (23 bp):
ATGCAGAAAAGCTGCCAGTAAAA
Found at i:33920489 original size:19 final size:18
Alignment explanation
Indices: 33920465--33920500 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
33920455 AATTTAGCCC
*
33920465 TTTTTATTTTAATATTTTG
1 TTTTTAATTTAAT-TTTTG
33920484 TTTTTAATTTAATTTTT
1 TTTTTAATTTAATTTTT
33920501 ACATTCTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTTTAATTTAATTTTTG
Found at i:33934734 original size:24 final size:24
Alignment explanation
Indices: 33934681--33934734 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
33934671 TCAAACCATT
*
33934681 TACACATGGAAACTTCAGTTGGTA
1 TACACTTGGAAACTTCAGTTGGTA
*
33934705 TACACTTGGAAACTTCAGTTTGTA
1 TACACTTGGAAACTTCAGTTGGTA
33934729 TACACT
1 TACACT
33934735 CCTGGGCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (24 bp):
TACACTTGGAAACTTCAGTTGGTA
Found at i:33936389 original size:17 final size:17
Alignment explanation
Indices: 33936365--33936407 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
33936355 TAGATCTCTG
33936365 ACGAGCTTCCATACCAA
1 ACGAGCTTCCATACCAA
* *
33936382 ATGAGCTTCCATACCGA
1 ACGAGCTTCCATACCAA
33936399 ACGAGCTTC
1 ACGAGCTTC
33936408 TGATTATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (17 bp):
ACGAGCTTCCATACCAA
Found at i:33939453 original size:11 final size:11
Alignment explanation
Indices: 33939433--33939461 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
33939423 GCTTGGCATC
33939433 TTCC-TAGAAT
1 TTCCATAGAAT
33939443 TTCCATAGAAT
1 TTCCATAGAAT
33939454 TTCCATAG
1 TTCCATAG
33939462 CATTCAGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (11 bp):
TTCCATAGAAT
Found at i:33942557 original size:27 final size:25
Alignment explanation
Indices: 33942508--33942601 Score: 109
Period size: 25 Copynumber: 3.7 Consensus size: 25
33942498 CGGATACTCC
*
33942508 ACAGCTCGTGTGAGCAAGT-TGATTTT
1 ACAGCTCGTGTGAGC-ATTCTGA-TTT
33942534 CACAGCTCGTGTGAGCATTCTGATTT
1 -ACAGCTCGTGTGAGCATTCTGATTT
* *
33942560 AAAGCTTGTGTGAGCATTCTGATTT
1 ACAGCTCGTGTGAGCATTCTGATTT
* *
33942585 ACAACTCATGTGAGCAT
1 ACAGCTCGTGTGAGCAT
33942602 ACATGTACAA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
25 36 0.61
26 5 0.08
27 18 0.31
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATTCTGATTT
Found at i:33945902 original size:17 final size:17
Alignment explanation
Indices: 33945876--33945909 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
33945866 AACCAAAGTG
33945876 ATTTCATTTAATTTTAT
1 ATTTCATTTAATTTTAT
* *
33945893 ATTTCCTTTATTTTTAT
1 ATTTCATTTAATTTTAT
33945910 TTTTATTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTCATTTAATTTTAT
Found at i:33948149 original size:24 final size:25
Alignment explanation
Indices: 33948103--33948149 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
33948093 AGGAATTTGG
*
33948103 CTAAATGAATTGATGATGGAAATGA
1 CTAAATGAATTGATGATGAAAATGA
* *
33948128 CTAAGTGAA-TGATGGTGAAAAT
1 CTAAATGAATTGATGATGAAAAT
33948150 TCGGCTAAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.43, C:0.04, G:0.26, T:0.28
Consensus pattern (25 bp):
CTAAATGAATTGATGATGAAAATGA
Found at i:33950782 original size:23 final size:23
Alignment explanation
Indices: 33950756--33950801 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
33950746 TAAAAAAAAT
33950756 TTGAGGCTTTCGCAAAATACTAA
1 TTGAGGCTTTCGCAAAATACTAA
*
33950779 TTGAGGTTTTCGCAAAATACTAA
1 TTGAGGCTTTCGCAAAATACTAA
33950802 CATTGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (23 bp):
TTGAGGCTTTCGCAAAATACTAA
Found at i:33951287 original size:18 final size:18
Alignment explanation
Indices: 33951266--33951300 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33951256 AAATTTTACT
33951266 TTTAGTTCAAGTTTTTAG
1 TTTAGTTCAAGTTTTTAG
* *
33951284 TTTATTTCATGTTTTTA
1 TTTAGTTCAAGTTTTTA
33951301 TTAATAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.06, G:0.11, T:0.63
Consensus pattern (18 bp):
TTTAGTTCAAGTTTTTAG
Found at i:33957043 original size:384 final size:384
Alignment explanation
Indices: 33956188--33957166 Score: 1168
Period size: 384 Copynumber: 2.5 Consensus size: 384
33956178 ATGAGAATGA
* ** ** *
33956188 GAGGTAAAAACTAGGTTAATTACTAGCTAATTGGTAAAACCCTAAATC-AGTAGTTAACAATAAA
1 GAGGTAATAACTAGGTTAATTACTAGCTAATTGGGGAAACCCTAAATCGA-TAGTTAATTATGAA
* * *
33956252 CACTAAAACGAGTTAGTATTTTGTTTGCTTATTCA--ATTATTTT-TTA--TTTTTTATTTTGCA
65 CATTGAAACGAGTTA-TTTTTTGTTTGCTTATTCATGATT-TTTTATTATTTTTTTTATTTTGCA
* * * * * *
33956312 TATTTTATTTCAGAATACTTATACTTATGATTTTTCATACTACGATTTCAATTGAGCACTATCTA
128 TATTTTATTTCAGAATATTTATACTTATGATTTTTCGTACTATGATTTCAATTGAGTATTGTCTA
* * * *
33956377 GACTTGTTAGTGTAGGAA-CTAGTCGGATTGGGTTGAGTGAAATTAAACCCTATGATTGACGACC
193 GACTTGTTAGTGTAGGAATCTAGCCGGATTAGGTTGAGTGAAATTAAACCCTAGGATTGACAACC
*
33956441 TTAGAAAGACATTTAGGTAGGTAGGCTGCGAGGATAACTCTACCATGCATCTCTAAAATTGTCCC
258 TTAGAAAGACATTTAGGTAGGTAGGC-GC--GGATAACTCTACCACGCATCTCTAAAATTGTCCC
* * * **
33956506 GATTTGAATTATGAAGTCACGATCTAATTAGTTTTTGTCGACTAGTTAGTCTAATTAAAGGTTGG
320 GATTTGAATTATGAAGTCACGATATAAGTAGTTCTTGTCGACTAGTTAGTCTAATTAAAGCCTGG
* *
33956571 GAGGTAATAACTAGGTTACTTTCTAGCTAATTGGGGAAACCCTAAATCGATAGTTAATTATGAAC
1 GAGGTAATAACTAGGTTAATTACTAGCTAATTGGGGAAACCCTAAATCGATAGTTAATTATGAAC
33956636 ATTGAAAC-ATGTTAGTTTTTTGTTTGCTTATTCAGTGATTTTTTATTATTTTTTCTTATTTTGC
66 ATTGAAACGA-GTTA-TTTTTTGTTTGCTTATTCA-TGATTTTTTATTATTTTTT-TTATTTTGC
* * **
33956700 GTGTTTTATTTCAGAATATTTATACTTATGATTTTTCGTACTATGATTTTGATTGAGTATTGTCT
127 ATATTTTATTTCAGAATATTTATACTTATGATTTTTCGTACTATGATTTCAATTGAGTATTGTCT
33956765 AGACTTGTTAGTGTAGGAATC-AGCCGGATTAGGTTGAGTGAAATTAAACCCTAGGATTGACAAC
192 AGACTTGTTAGTGTAGGAATCTAGCCGGATTAGGTTGAGTGAAATTAAACCCTAGGATTGACAAC
* * *
33956829 CTTAGAAA-ATCATTTAGGTAGGTAGGC-C-GATAACTCTATCGCGCATCTCTCAAATT-TCCCC
257 CTTAGAAAGA-CATTTAGGTAGGTAGGCGCGGATAACTCTACCACGCATCTCTAAAATTGT-CCC
* * *
33956890 GGTTTGAATTAT-AAGGTCGA-GATATAAGTAGTTCTTGTCGACTAGTTAGTCTAGTTCAAGCCT
320 GATTTGAATTATGAA-GTC-ACGATATAAGTAGTTCTTGTCGACTAGTTAGTCTAATTAAAGCCT
33956953 GG
383 GG
* * *
33956955 GAGGTAATAACTAGGTTAATTACAAGCTAATTGGGGAAACCCTGAATCGATTGTTAATTATGAAC
1 GAGGTAATAACTAGGTTAATTACTAGCTAATTGGGGAAACCCTAAATCGATAGTTAATTATGAAC
* * ** * * * *
33957020 ATTGAAGCGAGTTATTCTTTTGTTTTCTTATTCAATGATTTTCAATTGTTTATTTTGTTTT-CTT
66 ATTGAAACGAGTTATT-TTTTGTTTGCTTATTC-ATGATTTTTTATTATTTTTTTTATTTTGCAT
** * * *
33957084 ATTTTGTATGTTTTG--T-TTTGTACTTATGATTTTTCGTAATATGATTTCAATTAAGTATTGTC
129 A-TTT-TAT-TTCAGAATATTTATACTTATGATTTTTCGTACTATGATTTCAATTGAGTATTGTC
*
33957146 TATACTTGTTAGTGTAGGAAT
191 TAGACTTGTTAGTGTAGGAAT
33957167 TAATTGCTAG
Statistics
Matches: 517, Mismatches: 59, Indels: 41
0.84 0.10 0.07
Matches are distributed among these distances:
382 64 0.12
383 99 0.19
384 184 0.36
385 10 0.02
386 6 0.01
387 1 0.00
388 5 0.01
389 147 0.28
390 1 0.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (384 bp):
GAGGTAATAACTAGGTTAATTACTAGCTAATTGGGGAAACCCTAAATCGATAGTTAATTATGAAC
ATTGAAACGAGTTATTTTTTGTTTGCTTATTCATGATTTTTTATTATTTTTTTTATTTTGCATAT
TTTATTTCAGAATATTTATACTTATGATTTTTCGTACTATGATTTCAATTGAGTATTGTCTAGAC
TTGTTAGTGTAGGAATCTAGCCGGATTAGGTTGAGTGAAATTAAACCCTAGGATTGACAACCTTA
GAAAGACATTTAGGTAGGTAGGCGCGGATAACTCTACCACGCATCTCTAAAATTGTCCCGATTTG
AATTATGAAGTCACGATATAAGTAGTTCTTGTCGACTAGTTAGTCTAATTAAAGCCTGG
Found at i:33958930 original size:30 final size:30
Alignment explanation
Indices: 33958870--33958930 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
33958860 TAGACCGGAG
*
33958870 CAGTTGGATAGTCACTAACCCGTACCGAAC
1 CAGTTGGATAGTCACTAACCCGGACCGAAC
* *
33958900 CAGTTGGATAGTCACTAACTCGGACTGAAC
1 CAGTTGGATAGTCACTAACCCGGACCGAAC
33958930 C
1 C
33958931 GACAGTAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (30 bp):
CAGTTGGATAGTCACTAACCCGGACCGAAC
Found at i:33959284 original size:17 final size:16
Alignment explanation
Indices: 33959271--33959314 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
33959261 TTTTAATAAG
33959271 ATTTAATATTTAATTTA
1 ATTTAATATTTAA-TTA
*
33959288 ATCTAATATTTATATTA
1 ATTTAATATTTA-ATTA
33959305 ATTTAATATT
1 ATTTAATATT
33959315 AAAGTGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 23 0.96
18 1 0.04
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTTAATATTTAATTA
Found at i:33959287 original size:22 final size:20
Alignment explanation
Indices: 33959256--33959312 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
33959246 ATAAATATTC
*
33959256 TATTATTTTAATAAGATTTAA
1 TATTAATTTAATAAGATTT-A
*
33959277 TATTTAATTTAATCTAATATTTA
1 TA-TTAATTTAA--TAAGATTTA
33959300 TATTAATTTAATA
1 TATTAATTTAATA
33959313 TTAAAGTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
20 2 0.06
21 2 0.06
22 17 0.55
23 3 0.10
24 7 0.23
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
TATTAATTTAATAAGATTTA
Found at i:33963371 original size:29 final size:29
Alignment explanation
Indices: 33963296--33963372 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
33963286 TGCCGTCACC
*
33963296 ATCCTTTTTCATAATCAATACCCGAAGCT
1 ATCCTTTTTCATAATCGATACCCGAAGCT
* * *
33963325 ATCCCTTTTCATAATCGATAGCTGAAGCT
1 ATCCTTTTTCATAATCGATACCCGAAGCT
*
33963354 ATCCTTTTTCATATTCGAT
1 ATCCTTTTTCATAATCGAT
33963373 GATCGTCGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.39
Consensus pattern (29 bp):
ATCCTTTTTCATAATCGATACCCGAAGCT
Found at i:33965883 original size:14 final size:14
Alignment explanation
Indices: 33965860--33965889 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
33965850 CACCCCTCAT
*
33965860 TCACATCTCTTCTC
1 TCACAACTCTTCTC
33965874 TCACAACTCTTCTC
1 TCACAACTCTTCTC
33965888 TC
1 TC
33965890 CTCTCTCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:33968384 original size:22 final size:21
Alignment explanation
Indices: 33968359--33968402 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
33968349 TGATAAACTT
33968359 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
33968381 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
33968402 T
1 T
33968403 CAACTTAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:33979781 original size:17 final size:17
Alignment explanation
Indices: 33979759--33979791 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33979749 ATTAACTGCC
33979759 TTTTCTG-TTCTCTCCCT
1 TTTTCTGATTCT-TCCCT
33979776 TTTTCTGATTCTTCCC
1 TTTTCTGATTCTTCCC
33979792 ATCTTCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.03, C:0.33, G:0.06, T:0.58
Consensus pattern (17 bp):
TTTTCTGATTCTTCCCT
Found at i:33984241 original size:56 final size:50
Alignment explanation
Indices: 33984086--33984262 Score: 183
Period size: 50 Copynumber: 3.4 Consensus size: 50
33984076 CAATGTCATA
* ** * * * *
33984086 TCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACGCCATG
* ** *
33984136 TCCAAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACGCCATG
**
33984186 TCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATTCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCAT---CTC---GATGCCAACGCCATG
33984242 TCCCAGACATGGTCTTACATG
1 TCCCAGACATGGTCTTACATG
33984263 AGATCTCTTT
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
50 70 0.66
53 3 0.03
56 33 0.31
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAACGCCATG
Found at i:33985090 original size:28 final size:28
Alignment explanation
Indices: 33985049--33985102 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
33985039 TATGGCTTCC
*
33985049 TTCAAATTTTAGCAGCAAGCAAGGATGA
1 TTCAAATTTCAGCAGCAAGCAAGGATGA
33985077 TTCAAATTTCAGCAGCAAGCAAGGAT
1 TTCAAATTTCAGCAGCAAGCAAGGAT
33985103 AATGAACACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (28 bp):
TTCAAATTTCAGCAGCAAGCAAGGATGA
Found at i:33985606 original size:42 final size:42
Alignment explanation
Indices: 33985556--33985680 Score: 164
Period size: 42 Copynumber: 3.0 Consensus size: 42
33985546 TTGCTTTCAC
33985556 GTTGCTTCCTTTTTTTTCTGAACTTGGATGTTACTTTCCCAA
1 GTTGCTTCCTTTTTTTTCTGAACTTGGATGTTACTTTCCCAA
**
33985598 GTTGCTTCCTTTTTTGTT-TGAACTTGGATGTTGTTTTCCCAA
1 GTTGCTTCCTTTTTT-TTCTGAACTTGGATGTTACTTTCCCAA
* * * *
33985640 GTTGCTTCATTTTTTATCT-AGACATGGATGTTTCTTTCCCA
1 GTTGCTTCCTTTTTTTTCTGA-ACTTGGATGTTACTTTCCCA
33985681 TGTAACTTCC
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 2 0.03
42 69 0.95
43 2 0.03
ACGTcount: A:0.14, C:0.19, G:0.16, T:0.50
Consensus pattern (42 bp):
GTTGCTTCCTTTTTTTTCTGAACTTGGATGTTACTTTCCCAA
Found at i:33988180 original size:38 final size:38
Alignment explanation
Indices: 33988112--33988185 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
33988102 TGTGGTGGGG
* *
33988112 GAGTGTTGGAGCGATTTTATGAGGAAAATATGGGATCA
1 GAGTGTTGGAGCGACTTTATGAGGAAAATATAGGATCA
* *
33988150 GAGTGTTGGAGTGACTTTA-GAAGGATAATATAGGAT
1 GAGTGTTGGAGCGACTTTATG-AGGAAAATATAGGAT
33988186 TGTGGAGTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.32, C:0.04, G:0.34, T:0.30
Consensus pattern (38 bp):
GAGTGTTGGAGCGACTTTATGAGGAAAATATAGGATCA
Found at i:33997679 original size:16 final size:15
Alignment explanation
Indices: 33997650--33997683 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
33997640 TATTTAATTG
33997650 TCAAATTAAGTTAAT
1 TCAAATTAAGTTAAT
*
33997665 TCAATATTAATTTAAT
1 TCAA-ATTAAGTTAAT
33997681 TCA
1 TCA
33997684 TGTGATAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (15 bp):
TCAAATTAAGTTAAT
Found at i:34000441 original size:20 final size:20
Alignment explanation
Indices: 34000416--34000520 Score: 84
Period size: 20 Copynumber: 5.2 Consensus size: 20
34000406 TGTATGGGAG
*
34000416 TGCACTTCGGTGCCTCTGTT
1 TGCACTTCGGTGCCCCTGTT
* **
34000436 TGCACTTTGGTGCCCCCATT
1 TGCACTTCGGTGCCCCTGTT
* * * * * *
34000456 TTCACTTCAGTTCCTCTATA
1 TGCACTTCGGTGCCCCTGTT
* *
34000476 TACACTTCGGTGTCCCTGTT
1 TGCACTTCGGTGCCCCTGTT
* *
34000496 CGCACTACGGTGCCCCTGTT
1 TGCACTTCGGTGCCCCTGTT
34000516 TGCAC
1 TGCAC
34000521 ATTTATGCCC
Statistics
Matches: 62, Mismatches: 23, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.11, C:0.33, G:0.19, T:0.36
Consensus pattern (20 bp):
TGCACTTCGGTGCCCCTGTT
Found at i:34004134 original size:50 final size:50
Alignment explanation
Indices: 34003992--34004233 Score: 173
Period size: 50 Copynumber: 4.7 Consensus size: 50
34003982 GATAATAACA
* * ** * * *
34003992 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAT-CGG
* ** * * * **
34004041 TGTCAATACCATATCCCATATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATCGG
* * * ** *
34004091 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATCGG
* * *
34004141 TGCCAACGCCATGTCCTAAACATGGTCTTACATGGGACCTTTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
34004197 TGCCAATGCCATGTCCCAAACATGGTCTTAAATGGGA
1 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGA
34004234 TCTCATCACC
Statistics
Matches: 151, Mismatches: 34, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
48 1 0.01
49 36 0.24
50 77 0.51
53 2 0.01
56 35 0.23
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:34006788 original size:43 final size:43
Alignment explanation
Indices: 34006740--34006824 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
34006730 TACAAGTCGG
* * ** *
34006740 TTCAACAACGCAAGATTATTTTCTCCTCTTTTAAAATTCTTTT
1 TTCAACAACCCAAAATTACCTTCTACTCTTTTAAAATTCTTTT
*
34006783 TTCAACAACCCAAAATTACCTTCTACTCTTTTTAAATTCTTT
1 TTCAACAACCCAAAATTACCTTCTACTCTTTTAAAATTCTTT
34006825 ATTTTTTCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (43 bp):
TTCAACAACCCAAAATTACCTTCTACTCTTTTAAAATTCTTTT
Found at i:34007598 original size:3 final size:3
Alignment explanation
Indices: 34007592--34007620 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
34007582 TTTTTTCTCT
34007592 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
34007621 TTTCTTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:34016833 original size:26 final size:26
Alignment explanation
Indices: 34016804--34016857 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
34016794 ATGGAATCAA
*
34016804 CACATAGCGCTACACATATGACCTAG
1 CACATAGCACTACACATATGACCTAG
*
34016830 CACATAGTACTACACATATGACCTAG
1 CACATAGCACTACACATATGACCTAG
34016856 CA
1 CA
34016858 ACTTCACTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.37, C:0.30, G:0.13, T:0.20
Consensus pattern (26 bp):
CACATAGCACTACACATATGACCTAG
Found at i:34016835 original size:14 final size:14
Alignment explanation
Indices: 34016816--34016857 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
34016806 CATAGCGCTA
34016816 CACATATGACCTAG
1 CACATATGACCTAG
34016830 CACATA-GTA-CTA-
1 CACATATG-ACCTAG
34016842 CACATATGACCTAG
1 CACATATGACCTAG
34016856 CA
1 CA
34016858 ACTTCACTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
12 7 0.29
13 8 0.33
14 9 0.38
ACGTcount: A:0.38, C:0.29, G:0.12, T:0.21
Consensus pattern (14 bp):
CACATATGACCTAG
Found at i:34022574 original size:17 final size:17
Alignment explanation
Indices: 34022554--34022587 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34022544 CATGAACATG
34022554 AAAATGTAATGACAATA
1 AAAATGTAATGACAATA
34022571 AAAATGTAATGACAATA
1 AAAATGTAATGACAATA
34022588 TATACTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.24
Consensus pattern (17 bp):
AAAATGTAATGACAATA
Found at i:34032393 original size:20 final size:20
Alignment explanation
Indices: 34032368--34032409 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
34032358 TTGATATTGT
34032368 TCATCATAGGGTAGTACTCA
1 TCATCATAGGGTAGTACTCA
34032388 TCATCATAGGGTAGTACTCA
1 TCATCATAGGGTAGTACTCA
34032408 TC
1 TC
34032410 TTCCTCAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (20 bp):
TCATCATAGGGTAGTACTCA
Found at i:34033342 original size:20 final size:20
Alignment explanation
Indices: 34033317--34033354 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34033307 TCCCCCTTTA
34033317 TTAACATAAA-AATTTAAAAT
1 TTAACA-AAATAATTTAAAAT
34033337 TTAACAAAATAATTTAAA
1 TTAACAAAATAATTTAAA
34033355 CTAGAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
TTAACAAAATAATTTAAAAT
Found at i:34045044 original size:29 final size:29
Alignment explanation
Indices: 34045002--34045060 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
34044992 CACTTAGGTC
34045002 TCCTCATTAGGAGCTAGTCTACATTTTGT
1 TCCTCATTAGGAGCTAGTCTACATTTTGT
34045031 TCCTCATTAGGAGCTAGTCTACATTTTGT
1 TCCTCATTAGGAGCTAGTCTACATTTTGT
34045060 T
1 T
34045061 TTCACGTTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.42
Consensus pattern (29 bp):
TCCTCATTAGGAGCTAGTCTACATTTTGT
Found at i:34046421 original size:17 final size:17
Alignment explanation
Indices: 34046399--34046432 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
34046389 CACGAACATG
34046399 AAAATGTAATGACAATA
1 AAAATGTAATGACAATA
*
34046416 AAAATGTAATTACAATA
1 AAAATGTAATGACAATA
34046433 TATACTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAATGTAATGACAATA
Found at i:34046915 original size:18 final size:18
Alignment explanation
Indices: 34046889--34046941 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
34046879 TCAGCAACTT
* *
34046889 CTTCTTCTTTAGCAATAA
1 CTTCCTCTTTAGCAACAA
*
34046907 CTTTCTCTTCT-GCAACAA
1 CTTCCTCTT-TAGCAACAA
*
34046925 CTTCCTCTTTAACAACA
1 CTTCCTCTTTAGCAACA
34046942 GTGTCCTCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 1 0.04
18 26 0.93
19 1 0.04
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.40
Consensus pattern (18 bp):
CTTCCTCTTTAGCAACAA
Found at i:34052260 original size:22 final size:19
Alignment explanation
Indices: 34052229--34052275 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
34052219 AAAGATGATA
34052229 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
34052252 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
34052271 ATTAT
1 ATTAT
34052276 CAGCTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:34052271 original size:16 final size:15
Alignment explanation
Indices: 34052231--34052272 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
34052221 AGATGATAAT
34052231 TATTAATATATAATTA
1 TATTAAT-TATAATTA
34052247 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
34052263 TATTAATTAT
1 TATTAATTAT
34052273 TATCAGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:34060693 original size:22 final size:21
Alignment explanation
Indices: 34060668--34060711 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
34060658 TGATAAACTT
34060668 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
34060690 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
34060711 T
1 T
34060712 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:34070140 original size:17 final size:17
Alignment explanation
Indices: 34070118--34070151 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
34070108 CACGAACATG
*
34070118 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
34070135 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
34070152 TATACTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:34083848 original size:22 final size:22
Alignment explanation
Indices: 34083787--34083850 Score: 74
Period size: 24 Copynumber: 2.8 Consensus size: 22
34083777 TCATGTACCC
34083787 ACAACCAAAAATGCACATATAT
1 ACAACCAAAAATGCACATATAT
* ***
34083809 ACAAGCATGGATGAGCACATATAT
1 ACAACCAAAAAT--GCACATATAT
34083833 ACAACCAAAAATGCACAT
1 ACAACCAAAAATGCACAT
34083851 CAACCATGTT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
22 14 0.44
24 18 0.56
ACGTcount: A:0.50, C:0.22, G:0.11, T:0.17
Consensus pattern (22 bp):
ACAACCAAAAATGCACATATAT
Found at i:34084176 original size:25 final size:24
Alignment explanation
Indices: 34084136--34084217 Score: 83
Period size: 25 Copynumber: 3.3 Consensus size: 24
34084126 TCTTGTACGT
* *
34084136 GTATGCTCATATGAGCTGTGAATCG
1 GTATGCTCACACGAGCTGT-AATCG
*
34084161 GTATGCTCACTCGAGCTGTAGATCG
1 GTATGCTCACACGAGCTGTA-ATCG
* * *
34084186 GTATGCTCTCACAACCTGTAAATCG
1 GTATGCTCACACGAGCTGT-AATCG
34084211 GTATGCT
1 GTATGCT
34084218 AACATGAGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
24 1 0.02
25 46 0.96
26 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (24 bp):
GTATGCTCACACGAGCTGTAATCG
Found at i:34096509 original size:56 final size:50
Alignment explanation
Indices: 34096431--34096621 Score: 222
Period size: 50 Copynumber: 3.7 Consensus size: 50
34096421 GAGGATGAGA
34096431 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGGGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--T--GA-TATGAGAGG
* *
34096487 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGAGG
** * * **
34096537 TCCCCCGTAAGACCATGTGTGGGACATGGCGTTGGCACCT-ATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CTGATATGAGAGG
* *
34096587 TCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG
34096622 TAGTACAAGA
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
50 78 0.65
51 4 0.03
53 1 0.01
55 1 0.01
56 36 0.30
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATGAGAGG
Found at i:34102222 original size:101 final size:101
Alignment explanation
Indices: 34102113--34102360 Score: 390
Period size: 101 Copynumber: 2.5 Consensus size: 101
34102103 CATGGCCCTG
* ** * * *
34102113 CCATGGTCTTACATTTGTAGTGTCATAACCCAATTATGTTCTTATCATCAGAATGCCATAGC-CT
1 CCATGGTCTTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAACGCCATAGCAC-
* *
34102177 AGCTATGGTCTTACATATAAACACTGCCATGGTCCAA
65 AGCTATGGTCTTACATATAAACACTACCATAGTCCAA
*
34102214 CCATGGTCTTACGTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAACGCCATAGCACA
1 CCATGGTCTTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAACGCCATAGCACA
*
34102279 GCTATGGTCTTACATATAAACACTACCATAGTCTAA
66 GCTATGGTCTTACATATAAACACTACCATAGTCCAA
34102315 CCATGGTCTTACGTTCATAGTGCCATAACCCAATTATGGTCTTATC
1 CCATGGTCTTACGTTCATAGTGCCATAACCCAATTATGGTCTTATC
34102361 CGCCAATTCA
Statistics
Matches: 135, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
101 134 0.99
102 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (101 bp):
CCATGGTCTTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAACGCCATAGCACA
GCTATGGTCTTACATATAAACACTACCATAGTCCAA
Found at i:34109386 original size:27 final size:26
Alignment explanation
Indices: 34109344--34109428 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 26
34109334 AATACATCAA
*
34109344 GAAAGAAAAGCCTTTGTGGATAAATAT
1 GAAAGGAAAGCCTTTGTGGA-AAATAT
* *
34109371 GAAAGGAAAGCTTTTGATGCAAAATAT
1 GAAAGGAAAGCCTTTG-TGGAAAATAT
*
34109398 GAAAGGAAAGCCTCTGTGGAGAAATAT
1 GAAAGGAAAGCCTTTGTGGA-AAATAT
34109425 GAAA
1 GAAA
34109429 TGATGACTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.06
27 44 0.88
28 3 0.06
ACGTcount: A:0.45, C:0.08, G:0.25, T:0.22
Consensus pattern (26 bp):
GAAAGGAAAGCCTTTGTGGAAAATAT
Found at i:34116988 original size:10 final size:10
Alignment explanation
Indices: 34116973--34116997 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
34116963 GAATCTATCG
34116973 AAAATAAATC
1 AAAATAAATC
34116983 AAAATAAATC
1 AAAATAAATC
34116993 AAAAT
1 AAAAT
34116998 TTATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAAATC
Found at i:34121718 original size:26 final size:26
Alignment explanation
Indices: 34121679--34121739 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
34121669 TATCTACAAT
34121679 AGTTTCA-AATATCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
** *
34121704 AGTTTCAGAATATCATTGCATGTATC
1 AGTTTCAGAATATCATAACATATATC
*
34121730 AGATTCAGAA
1 AGTTTCAGAA
34121740 CACTTATAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 7 0.23
26 24 0.77
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.34
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Found at i:34131775 original size:10 final size:10
Alignment explanation
Indices: 34131752--34131799 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
34131742 GAATCTATCG
* *
34131752 AAAATAAATC
1 AAAATTAATT
34131762 AAAATTAATT
1 AAAATTAATT
*
34131772 AAAATTTATCAT
1 AAAATTAAT--T
34131784 AAAATTAATT
1 AAAATTAATT
34131794 AAAATT
1 AAAATT
34131800 CAAAATTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 23 0.72
12 9 0.28
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:34137448 original size:17 final size:17
Alignment explanation
Indices: 34137426--34137464 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
34137416 TTCGCTAGTT
* *
34137426 TTGGTTCACCGCGTGTG
1 TTGGTTCACCGCATGCG
*
34137443 TTGGTTCAGCGCATGCG
1 TTGGTTCACCGCATGCG
34137460 TTGGT
1 TTGGT
34137465 CAGTGGTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.08, C:0.21, G:0.36, T:0.36
Consensus pattern (17 bp):
TTGGTTCACCGCATGCG
Found at i:34140332 original size:40 final size:40
Alignment explanation
Indices: 34140234--34140496 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
34140224 TCCTCGTTCA
* * * * *
34140234 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
34140273 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
34140313 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
34140353 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
34140393 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
34140433 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
34140473 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
34140497 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:34148041 original size:27 final size:27
Alignment explanation
Indices: 34148010--34148160 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
34148000 TAAATTGTAC
34148010 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
34148037 TGCACTAAGTGTGCGAAATGA--ATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34148062 GATGCACTAAGTGTGCGAATTGACCATGC
1 -A-GCACTAAGTGTGCGATTTGACTATGT
*
34148091 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34148119 AGCACTAAGTGTGCGATTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34148146 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34148161 GACTCAATAT
Statistics
Matches: 105, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
25 4 0.04
27 75 0.71
28 23 0.22
29 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34148151 original size:82 final size:81
Alignment explanation
Indices: 34148011--34148160 Score: 221
Period size: 82 Copynumber: 1.8 Consensus size: 81
34148001 AAATTGTACA
* *
34148011 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
34148076 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
34148092 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTAT-ATAGCACTGAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGT
34148156 GTGCG
64 GTGCG
34148161 GACTCAATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.28
82 44 0.72
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34154421 original size:27 final size:28
Alignment explanation
Indices: 34154348--34154425 Score: 101
Period size: 27 Copynumber: 2.9 Consensus size: 28
34154338 GTTAAATGAC
34154348 CGAAATACCCTCGAT-GGGTAAAATTAT
1 CGAAATACCCTCGATAGGGTAAAATTAT
*
34154375 CGAAATACCCCCGA-AGGGTAAAATTA-
1 CGAAATACCCTCGATAGGGTAAAATTAT
*
34154401 CTGAAATACCCTC-ATATGGTAAAAT
1 C-GAAATACCCTCGATAGGGTAAAAT
34154426 GAATGTTATA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
26 2 0.04
27 43 0.96
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (28 bp):
CGAAATACCCTCGATAGGGTAAAATTAT
Found at i:34155820 original size:33 final size:33
Alignment explanation
Indices: 34155783--34155864 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
34155773 ATTGCCATGG
* * *
34155783 CCCAACCATGGTCTT-TCATTCATAGTGTCATAA
1 CCCAACTATGGTCTTATCA-TCAGAATGTCATAA
* *
34155816 CCCAATTATGGTCTTATCATCAGAATGTCATAG
1 CCCAACTATGGTCTTATCATCAGAATGTCATAA
*
34155849 CCCAGCTATGGTCTTA
1 CCCAACTATGGTCTTA
34155865 CTTATAAATA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
33 38 0.93
34 3 0.07
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.33
Consensus pattern (33 bp):
CCCAACTATGGTCTTATCATCAGAATGTCATAA
Found at i:34155918 original size:101 final size:101
Alignment explanation
Indices: 34155775--34156000 Score: 319
Period size: 101 Copynumber: 2.2 Consensus size: 101
34155765 ACACATGCAT
* * * * *
34155775 TGCCATGGCCCAACCATGGTCTTTCATTCATAGTGTCATAACCCAATTATGGTCTTATCATCAGA
1 TGCCATGGTCCAACCATGGTCTTACATTCAAAGTGCCATAACCCAATTATGGTCTTATCATCAAA
* *
34155840 ATGTCATAGCC-CAGCTATGGTCTTACTTATAAATAC
66 ATGTCATA-CCACAGCTATGGTCTTACATATAAACAC
* * * * *
34155876 TGCCATGGTCCAACCATGGTCTTACGTTCAAAGTGCCATAACCTAGTTATGGTCTTTTCATTAAA
1 TGCCATGGTCCAACCATGGTCTTACATTCAAAGTGCCATAACCCAATTATGGTCTTATCATCAAA
*
34155941 ATGTCATACCACAGCTATGGTCTTACATATAAACAT
66 ATGTCATACCACAGCTATGGTCTTACATATAAACAC
34155977 TGCCATGGTCCAACCATGGTCTTA
1 TGCCATGGTCCAACCATGGTCTTA
34156001 TCCTTCAATT
Statistics
Matches: 111, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 2 0.02
101 109 0.98
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
TGCCATGGTCCAACCATGGTCTTACATTCAAAGTGCCATAACCCAATTATGGTCTTATCATCAAA
ATGTCATACCACAGCTATGGTCTTACATATAAACAC
Found at i:34159751 original size:101 final size:101
Alignment explanation
Indices: 34159628--34159840 Score: 302
Period size: 101 Copynumber: 2.1 Consensus size: 101
34159618 CATGGCTCAG
* * ** * * *
34159628 CCATGATCTTACATTCGTAGTGCCATAACCCAGTTATGGTCT-TATCATCAGAATGTCATAGCCC
1 CCATGGTCTTACACTCAAAGTGCCATAACCCAGTTATGGTATAT-TAATCAAAATGTCATAGCCC
* *
34159692 AACTATGGTCTTACTTATAAATATTGCAATGGTCCAA
65 AACTATGATCTTACATATAAATATTGCAATGGTCCAA
* *
34159729 CCATGGTCTTACACTCAAAGTGCCATAACCTAGTTATGGTATATTAATTAAAATGTCATAGCCCA
1 CCATGGTCTTACACTCAAAGTGCCATAACCCAGTTATGGTATATTAATCAAAATGTCATAGCCCA
*
34159794 ACTATGATCTTACATATAAATATTGCCATGGTCCAA
66 ACTATGATCTTACATATAAATATTGCAATGGTCCAA
34159830 CCATGGTCTTA
1 CCATGGTCTTA
34159841 TCCGTCAATT
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
101 98 0.99
102 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.32
Consensus pattern (101 bp):
CCATGGTCTTACACTCAAAGTGCCATAACCCAGTTATGGTATATTAATCAAAATGTCATAGCCCA
ACTATGATCTTACATATAAATATTGCAATGGTCCAA
Found at i:34162708 original size:15 final size:15
Alignment explanation
Indices: 34162688--34162717 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34162678 CCTATAGAAA
*
34162688 TTAAATACAACTAAG
1 TTAAATAAAACTAAG
34162703 TTAAATAAAACTAAG
1 TTAAATAAAACTAAG
34162718 AAAACAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.27
Consensus pattern (15 bp):
TTAAATAAAACTAAG
Found at i:34164566 original size:79 final size:79
Alignment explanation
Indices: 34164435--34164593 Score: 318
Period size: 79 Copynumber: 2.0 Consensus size: 79
34164425 TTATGAAAGT
34164435 AAGTTTAAACACTTTGGTGAAAAAAATATTTGGATTTGGGAAATGATTAAAAACTAAAAAACAAA
1 AAGTTTAAACACTTTGGTGAAAAAAATATTTGGATTTGGGAAATGATTAAAAACTAAAAAACAAA
34164500 GTAAAATAAAATAA
66 GTAAAATAAAATAA
34164514 AAGTTTAAACACTTTGGTGAAAAAAATATTTGGATTTGGGAAATGATTAAAAACTAAAAAACAAA
1 AAGTTTAAACACTTTGGTGAAAAAAATATTTGGATTTGGGAAATGATTAAAAACTAAAAAACAAA
34164579 GTAAAATAAAATAA
66 GTAAAATAAAATAA
34164593 A
1 A
34164594 GTTCTAATGC
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.26
Consensus pattern (79 bp):
AAGTTTAAACACTTTGGTGAAAAAAATATTTGGATTTGGGAAATGATTAAAAACTAAAAAACAAA
GTAAAATAAAATAA
Found at i:34164955 original size:191 final size:191
Alignment explanation
Indices: 34164629--34165015 Score: 711
Period size: 191 Copynumber: 2.0 Consensus size: 191
34164619 GATTATAATT
34164629 AAGATGATATAATTGTGTTGGATTAATTACATTTCCTTACCTTAGAATCATTAAACTTATGCTTA
1 AAGATGATATAATTGTGTTGGATTAATTACATTTCCTTACCTTAGAATCATTAAACTTATGCTTA
* *
34164694 TACTTATTACTAATAAATCACGGCAACTCGGTAATTTGCTAACTTATGAACATATTTACAAATCA
66 TACTTATTACTAATAAATCACGGCAACTCGATAATTTGCTAACTTATGAACATATTTACAAATAA
***
34164759 AAAATCCATTCATCTCTTGTACATATTCCTATGTCAATTCGACCGATAAAATTTTTTTATA
131 AAAATCCATTCATCTCTTGTACATATTCCTATGTCAATTCGACCGATAAAATAGATTTATA
*
34164820 AAGATGATATAATTGTGTTGGATTAATTACATTTCCTTATCTTAGAATCATTAAACTTATGCTTA
1 AAGATGATATAATTGTGTTGGATTAATTACATTTCCTTACCTTAGAATCATTAAACTTATGCTTA
34164885 TACTTATTACTAATAAATCACGGCAACTCGATAATTTGCTAACTTATGAACATATTTACAAATAA
66 TACTTATTACTAATAAATCACGGCAACTCGATAATTTGCTAACTTATGAACATATTTACAAATAA
*
34164950 AAAATCCATTCATCTCTTGTACATATTCCTATGTCAATTCGACCGTTAAAATAGATTTATA
131 AAAATCCATTCATCTCTTGTACATATTCCTATGTCAATTCGACCGATAAAATAGATTTATA
34165011 AAGAT
1 AAGAT
34165016 AAACATGTTA
Statistics
Matches: 189, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
191 189 1.00
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (191 bp):
AAGATGATATAATTGTGTTGGATTAATTACATTTCCTTACCTTAGAATCATTAAACTTATGCTTA
TACTTATTACTAATAAATCACGGCAACTCGATAATTTGCTAACTTATGAACATATTTACAAATAA
AAAATCCATTCATCTCTTGTACATATTCCTATGTCAATTCGACCGATAAAATAGATTTATA
Found at i:34165762 original size:14 final size:14
Alignment explanation
Indices: 34165743--34165772 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
34165733 AGTGAGAGAG
*
34165743 GAGAGAAGAGTTGT
1 GAGAGAAGAGATGT
34165757 GAGAGAAGAGATGT
1 GAGAGAAGAGATGT
34165771 GA
1 GA
34165773 ATGAGGGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.43, T:0.17
Consensus pattern (14 bp):
GAGAGAAGAGATGT
Found at i:34166095 original size:14 final size:15
Alignment explanation
Indices: 34166076--34166115 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
34166066 TGGCTGGTTT
*
34166076 GGTTC-ACTAGATTC
1 GGTTCAACTAGATGC
34166090 GGTTCAACTA-ATGC
1 GGTTCAACTAGATGC
34166104 GGTTCAACTAGA
1 GGTTCAACTAGA
34166116 CCATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (15 bp):
GGTTCAACTAGATGC
Found at i:34167905 original size:36 final size:35
Alignment explanation
Indices: 34167787--34167914 Score: 193
Period size: 35 Copynumber: 3.6 Consensus size: 35
34167777 ACTCTCTGTT
*
34167787 TTGGTGTGTTTTAGATGGATTAGCTCTTATGAGCA
1 TTGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
* * *
34167822 TTAGTGTGTTTCAGATGGGTTAACTCTTATGAGCA
1 TTGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
*
34167857 TTGGTGTGTTTCAGATGGATTAGCTCTTATAAGCA
1 TTGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
*
34167892 TATGGTGTGTTTCAGTTGGATTA
1 T-TGGTGTGTTTCAGATGGATTA
34167915 TCAATATACT
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
35 63 0.76
36 20 0.24
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTCAGATGGATTAGCTCTTATGAGCA
Found at i:34171615 original size:74 final size:73
Alignment explanation
Indices: 34171420--34171635 Score: 301
Period size: 75 Copynumber: 2.9 Consensus size: 73
34171410 TCCCTTAGTG
*
34171420 TTTCCCCAAATCAGTTCCCCTCCCCGAAAT-CCTAA-GATTTTCCCAAATCCCTTTCTTTTTTCC
1 TTTCCCCAAATCA-TTCCCCTCCCCGAAATCCCTAACTATTTTCCCAAATCCCTTTCTTTTTTCC
*
34171483 CCAATTTCT
65 CCAACTTCT
* *
34171492 TTTCCCCAAATCAATTCCCCTCCCCGAAATCCCTAAGCTTTTTTCCCAAATCCCTTTGTTTTTTC
1 TTTCCCCAAATC-ATTCCCCTCCCCGAAATCCCTAA-CTATTTTCCCAAATCCCTTTCTTTTTTC
34171557 CCCAACTTCT
64 CCCAACTTCT
* * * *
34171567 TTTCCCCAAATCATTCTCCTCCGCTAAATCCCTAACTATTTTCCCCAAATCCCTTACTTTCTTTC
1 TTTCCCCAAATCATTCCCCTCCCCGAAATCCCTAACTATTTT-CCCAAATCCCTTTCTTT-TTTC
34171632 CCCA
64 CCCA
34171636 TCTGCTGCAT
Statistics
Matches: 128, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
72 28 0.22
73 12 0.09
74 35 0.27
75 53 0.41
ACGTcount: A:0.21, C:0.39, G:0.03, T:0.37
Consensus pattern (73 bp):
TTTCCCCAAATCATTCCCCTCCCCGAAATCCCTAACTATTTTCCCAAATCCCTTTCTTTTTTCCC
CAACTTCT
Found at i:34171618 original size:21 final size:22
Alignment explanation
Indices: 34171592--34171635 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
34171582 CTCCTCCGCT
34171592 AAATCCCTAACTAT-TTTCCCC
1 AAATCCCTAACTATCTTTCCCC
* *
34171613 AAATCCCTTACTTTCTTTCCCC
1 AAATCCCTAACTATCTTTCCCC
34171635 A
1 A
34171636 TCTGCTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.25, C:0.39, G:0.00, T:0.36
Consensus pattern (22 bp):
AAATCCCTAACTATCTTTCCCC
Found at i:34176277 original size:43 final size:42
Alignment explanation
Indices: 34176229--34176389 Score: 191
Period size: 43 Copynumber: 3.8 Consensus size: 42
34176219 CAAATGCCAT
*
34176229 TAAAGAACATGATCTATAGCGGCGCTTCTCATAAAAACGCAGC
1 TAAAGAACATGATCTTTAGCGGCGCTTCTCATAAAAACGC-GC
* * *
34176272 TAAAGAACATGATCTTTAGCGGTGCTTCACATAAAAACGTCGT
1 TAAAGAACATGATCTTTAGCGGCGCTTCTCATAAAAACG-CGC
* *
34176315 TAAAGAACATGATCTTTAGCGGCGCTT-TTACTAAAAATGCCGC
1 TAAAGAACATGATCTTTAGCGGCGCTTCTCA-TAAAAACG-CGC
* *
34176358 TAAAGATCAT-ATTCCTTAGCGGCGCTTCTCAT
1 TAAAGAACATGA-TCTTTAGCGGCGCTTCTCAT
34176390 TTTCTATAGT
Statistics
Matches: 101, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
42 2 0.02
43 96 0.95
44 3 0.03
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (42 bp):
TAAAGAACATGATCTTTAGCGGCGCTTCTCATAAAAACGCGC
Found at i:34176335 original size:86 final size:86
Alignment explanation
Indices: 34176228--34176385 Score: 221
Period size: 86 Copynumber: 1.8 Consensus size: 86
34176218 ACAAATGCCA
*
34176228 TTAAAGAACATGATCTATAGCGGCGCTTCTCA-TAAAAACGCAGCTAAAGAACATGA-TCTTTAG
1 TTAAAGAACATGATCTATAGCGGCGCTT-TCACTAAAAACGCAGCTAAAGAACAT-ATTCCTTAG
*
34176291 CGGTGCTTCACATAAAAACGTCG
64 CGGCGCTTCACATAAAAACGTCG
* * * * *
34176314 TTAAAGAACATGATCTTTAGCGGCGCTTTTACTAAAAATGCCGCTAAAGATCATATTCCTTAGCG
1 TTAAAGAACATGATCTATAGCGGCGCTTTCACTAAAAACGCAGCTAAAGAACATATTCCTTAGCG
34176379 GCGCTTC
66 GCGCTTC
34176386 TCATTTTCTA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
85 3 0.05
86 60 0.95
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (86 bp):
TTAAAGAACATGATCTATAGCGGCGCTTTCACTAAAAACGCAGCTAAAGAACATATTCCTTAGCG
GCGCTTCACATAAAAACGTCG
Found at i:34179242 original size:18 final size:18
Alignment explanation
Indices: 34179219--34179260 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
34179209 CACTTCTATG
*
34179219 ACACCTCTTTTC-TCTGGT
1 ACACCTCCTTTCTTC-GGT
34179237 ACACCTCCTTTCTTCGGT
1 ACACCTCCTTTCTTCGGT
34179255 ACACCT
1 ACACCT
34179261 TATACAAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.14, C:0.38, G:0.10, T:0.38
Consensus pattern (18 bp):
ACACCTCCTTTCTTCGGT
Found at i:34182213 original size:15 final size:15
Alignment explanation
Indices: 34182193--34182222 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
34182183 CCTGTAGAAA
*
34182193 TTAAATACAACTAAG
1 TTAAATAAAACTAAG
34182208 TTAAATAAAACTAAG
1 TTAAATAAAACTAAG
34182223 AAAACAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.27
Consensus pattern (15 bp):
TTAAATAAAACTAAG
Found at i:34183483 original size:14 final size:14
Alignment explanation
Indices: 34183464--34183491 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
34183454 CCACAATAAT
34183464 TCATATCATTTGCA
1 TCATATCATTTGCA
34183478 TCATATCATTTGCA
1 TCATATCATTTGCA
34183492 ATTTTCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
TCATATCATTTGCA
Found at i:34185058 original size:45 final size:45
Alignment explanation
Indices: 34184994--34185082 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
34184984 AACAGATACT
* *
34184994 TGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 TGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
34185039 TGGTGGAATCAGCACATAGCAACCACCTTACTAATTAATGATGT
1 TGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
34185083 TCGGTTCACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (45 bp):
TGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:34185159 original size:51 final size:50
Alignment explanation
Indices: 34185101--34185279 Score: 189
Period size: 51 Copynumber: 3.5 Consensus size: 50
34185091 CATAGTAGTG
* * * *
34185101 TGCACATAGTACTATACATGTGACCATTACCATCCGATACACGTAGCAGCC
1 TGCACATAGTACTACACACGTGACCA-TACCATCCGGTACACGTAGTAGCC
* * * * ** *
34185152 TGCACATAGTACTACACACGTGATCGAAACTATCTGGTATGCATAGTAGCC
1 TGCACATAGTACTACACACGTGA-CCATACCATCCGGTACACGTAGTAGCC
* * * *
34185203 TACACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCATACCA-TCCGGTACACGTAGTAGCC
34185253 TGCACATAGTACTACACACGTGACCAT
1 TGCACATAGTACTACACACGTGACCAT
34185280 CACTTTCACT
Statistics
Matches: 100, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
49 2 0.02
50 38 0.38
51 58 0.58
52 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
TGCACATAGTACTACACACGTGACCATACCATCCGGTACACGTAGTAGCC
Found at i:34185298 original size:101 final size:101
Alignment explanation
Indices: 34185103--34185309 Score: 247
Period size: 101 Copynumber: 2.0 Consensus size: 101
34185093 TAGTAGTGTG
* *
34185103 CACATAGTACTATACATGTGACCATTACCATCCGATACACGTAGCAGCCTGCACATAGTACTACA
1 CACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGCAGCCTGCACATAGTACTACA
* ** *
34185168 CACGTGATCGAAACTATCTGGTATGCATAGTAGCCTA
65 CACGTGATCCAAACTATCACGTATACATAGTAGCCTA
* * *
34185205 CACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGCACATAGTACTACA
1 CACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGCAGCCTGCACATAGTACTACA
* * * * *
34185269 CACGTGA-CCATCACTTTCACTTTTACATAGTGGCCTA
65 CACGTGATCCA-AACTATCACGTATACATAGTAGCCTA
34185306 CACA
1 CACA
34185310 CAATCTGTGC
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
100 6 0.07
101 62 0.70
102 21 0.24
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (101 bp):
CACATAGTACTACACATGCGACCATACCATCCGATACACGTAGCAGCCTGCACATAGTACTACAC
ACGTGATCCAAACTATCACGTATACATAGTAGCCTA
Found at i:34190443 original size:51 final size:50
Alignment explanation
Indices: 34190384--34190570 Score: 214
Period size: 51 Copynumber: 3.7 Consensus size: 50
34190374 TCGGTTCAAA
* * *
34190384 TAGTAGCCTACACATAGTACTATACATGTGACCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCGATACACG
* * * * * * *
34190435 TAGTAGCCTTCACATAGTACTACACACGTGATCGAAACTATCTGATACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCCGATACACG
* * * *
34190486 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCCGATACACG
34190536 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
34190571 CACTTTCACT
Statistics
Matches: 111, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
49 2 0.02
50 39 0.35
51 68 0.61
52 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCGATACACG
Found at i:34190559 original size:101 final size:101
Alignment explanation
Indices: 34190383--34190566 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 101
34190373 TTCGGTTCAA
* * *
34190383 ATAGTAGCCTACACATAGTACTATACATGTGACCATTACCATCCGATACACGTAGTAGCCTTCAC
1 ATAGTAGCCTACACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTGCAC
34190448 ATAGTACTACACACGTGATCGAAACTATCTGATACGC
65 ATAGTACTACACACGTGATCGAAACTATCTGATACGC
* * *
34190485 ATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGCAC
1 ATAGTAGCCTACACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTGCAC
34190549 ATAGTACTACACACGTGA
65 ATAGTACTACACACGTGA
34190567 CCATCACTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.53
102 31 0.41
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (101 bp):
ATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTGCACA
TAGTACTACACACGTGATCGAAACTATCTGATACGC
Found at i:34193569 original size:39 final size:39
Alignment explanation
Indices: 34193515--34193594 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
34193505 GTTCTAAATG
34193515 TAAGTTTTCTTACTCAATTGTACTTTAATTTGCAAATAA
1 TAAGTTTTCTTACTCAATTGTACTTTAATTTGCAAATAA
34193554 TAAGTTTTCTTACTCAATTGTACTTTAATTTGCAAATAA
1 TAAGTTTTCTTACTCAATTGTACTTTAATTTGCAAATAA
34193593 TA
1 TA
34193595 CATTTATGAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.46
Consensus pattern (39 bp):
TAAGTTTTCTTACTCAATTGTACTTTAATTTGCAAATAA
Found at i:34196932 original size:37 final size:38
Alignment explanation
Indices: 34196891--34196978 Score: 153
Period size: 37 Copynumber: 2.3 Consensus size: 38
34196881 GATGTCGTTT
34196891 GAATGTTTTGTTAGCTAAAAATATAT-ATATAAAAAA-A
1 GAATGTTTTGTTAGCTAAAAATATATAATA-AAAAAAGA
34196928 GAATGTTTTGTTAGCTAAAAATATATAATAAAAAAAGA
1 GAATGTTTTGTTAGCTAAAAATATATAATAAAAAAAGA
34196966 GAATGTTTTGTTA
1 GAATGTTTTGTTA
34196979 ATTAGGATTC
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
37 32 0.65
38 17 0.35
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (38 bp):
GAATGTTTTGTTAGCTAAAAATATATAATAAAAAAAGA
Found at i:34197825 original size:9 final size:9
Alignment explanation
Indices: 34197805--34197862 Score: 89
Period size: 9 Copynumber: 6.4 Consensus size: 9
34197795 TTTGGTTAAA
*
34197805 AATTAACTG
1 AATTAACCG
*
34197814 AATTACCCG
1 AATTAACCG
34197823 AATTAACCG
1 AATTAACCG
*
34197832 AATTACCCG
1 AATTAACCG
34197841 AATTAACCG
1 AATTAACCG
34197850 AATTAACCG
1 AATTAACCG
34197859 AATT
1 AATT
34197863 GAATCACTAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:34197828 original size:18 final size:18
Alignment explanation
Indices: 34197805--34197862 Score: 98
Period size: 18 Copynumber: 3.2 Consensus size: 18
34197795 TTTGGTTAAA
*
34197805 AATTAACTGAATTACCCG
1 AATTAACCGAATTACCCG
34197823 AATTAACCGAATTACCCG
1 AATTAACCGAATTACCCG
*
34197841 AATTAACCGAATTAACCG
1 AATTAACCGAATTACCCG
34197859 AATT
1 AATT
34197863 GAATCACTAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.26
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:34197981 original size:13 final size:13
Alignment explanation
Indices: 34197965--34197989 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34197955 AATTTTTATG
34197965 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
34197978 ATTGGGTTGGGT
1 ATTGGGTTGGGT
34197990 TGAATACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:34201085 original size:20 final size:20
Alignment explanation
Indices: 34201060--34201100 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
34201050 TGTGGGATGG
34201060 TGTTGAAATAGGTAGAGAAA
1 TGTTGAAATAGGTAGAGAAA
34201080 TGTTGAAATAGGTAGAGAAA
1 TGTTGAAATAGGTAGAGAAA
34201100 T
1 T
34201101 AACTCTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.29, T:0.27
Consensus pattern (20 bp):
TGTTGAAATAGGTAGAGAAA
Found at i:34201507 original size:83 final size:84
Alignment explanation
Indices: 34201368--34201530 Score: 267
Period size: 83 Copynumber: 2.0 Consensus size: 84
34201358 TTTATGTGAA
*
34201368 AAACGCCGCTATAGAACATGACCTTTAACGGCGCTTTACCCACAAACGCCGCTAAAGATCATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAACGGCGCTTTACCCACAAACGCCGCTAAAGATCATGAC
*
34201433 CTTTAG-CGCTTTTATCAC
66 CTTTAGTAGCTTTTATCAC
* *
34201451 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTA-TCACAAACGCCGCTAAAGATCATGA
1 AAACGCCGCTAAAGAACATGACCTTTAACGGCGC-TTTACCCACAAACGCCGCTAAAGATCATGA
34201515 CCTTTAGTAGCTTTTA
65 CCTTTAGTAGCTTTTA
34201531 AAAATATTAA
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
83 63 0.85
84 11 0.15
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (84 bp):
AAACGCCGCTAAAGAACATGACCTTTAACGGCGCTTTACCCACAAACGCCGCTAAAGATCATGAC
CTTTAGTAGCTTTTATCAC
Found at i:34201521 original size:43 final size:43
Alignment explanation
Indices: 34201368--34201521 Score: 226
Period size: 43 Copynumber: 3.7 Consensus size: 43
34201358 TTTATGTGAA
* * *
34201368 AAACGCCGCTATAGAACATGACCTTTAACGGCGC-TTTACCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTA-TCAC
*
34201411 AAACGCCGCTAAAGATCATGACCTTTA---GCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAC
34201451 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAC
*
34201494 AAACGCCGCTAAAGATCATGACCTTTAG
1 AAACGCCGCTAAAGAACATGACCTTTAG
34201522 TAGCTTTTAA
Statistics
Matches: 102, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
40 33 0.32
41 4 0.04
43 65 0.64
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAC
Found at i:34201561 original size:16 final size:16
Alignment explanation
Indices: 34201542--34201575 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
34201532 AAATATTAAA
*
34201542 TATTAAAATCAAACAT
1 TATTAAAATCAAAAAT
*
34201558 TATTAATATCAAAAAT
1 TATTAAAATCAAAAAT
34201574 TA
1 TA
34201576 ATTAGTATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATCAAAAAT
Found at i:34203527 original size:110 final size:106
Alignment explanation
Indices: 34203381--34203867 Score: 545
Period size: 112 Copynumber: 4.4 Consensus size: 106
34203371 TACGAAAAAG
* *
34203381 AAAAAAAAATTTT-GGTGCTGGCTTGTCAATGACCGGCACCCAATGGTAAAAAAAATTTTTTACT
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAAT-GTAAAAAAAA--TTTT-CT
* * * *
34203445 TTTTTTTTCGTGTCAGAATCAGATATAATTATACGAAAAAAATAA
62 TTTTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
* *
34203490 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTAAAAAAAAATTTC
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCA-CC----CAATGTAAAAAAAATTTTC
*
34203555 TTTTTTTTTCATGTTAGAGTCAGATATAAATATACG-AAAAAATTA
61 TTTTTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
*
34203600 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAATTT
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCA-CC----C-AA-TGTAAAAAAAATTT
34203665 TCTTTGTTTTTTCATGTCAGAGTCAGATATAAATATAC-AAAAAAATT-
59 TCTTT-TTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
* * * * *
34203712 AAAAAAAAATTTTAGGTGCTGGTCTGTCAATGGCCGACACCCAGTACAAATTTTTTTAAAAAAA-
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCA-CC----C-AA---TGTAAAAAAAAT
* *
34203776 TTTC-TTTTTTTTCGTGTCAGAGTCAGATATAAATATATGAAAAAAATTA
57 TTTCTTTTTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
34203825 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCA
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCA
34203868 GTACAAATTA
Statistics
Matches: 344, Mismatches: 20, Indels: 30
0.87 0.05 0.08
Matches are distributed among these distances:
107 1 0.00
108 1 0.00
109 13 0.04
110 78 0.23
111 67 0.19
112 81 0.24
113 79 0.23
114 20 0.06
115 4 0.01
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (106 bp):
AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAATGTAAAAAAAATTTTCTTTTT
TTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
Found at i:34203701 original size:113 final size:113
Alignment explanation
Indices: 34203381--34203889 Score: 697
Period size: 113 Copynumber: 4.6 Consensus size: 113
34203371 TACGAAAAAG
* * **
34203381 AAAAAAAAATTTT-GGTGCTGGCTTGTCAATGACCGGCA-CC----C-AATGGTAAAAAAAATTT
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAA--T
* * * *
34203439 TTTACTTTTTTTTTCGTGTCAGAATCAGATATAATTATACGAAAAAAATAA
64 TTT-CTTTTTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
*
34203490 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAC-AA-TTTAAAAAAAAATT
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAATTT
*
34203553 TCTTTTTTTTTCATGTTAGAGTCAGATATAAATATACG-AAAAAATTA
66 TCTTTTTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
34203600 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAATTT
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAATTT
34203665 TCTTTGTTTTTTCATGTCAGAGTCAGATATAAATATAC-AAAAAAATT-
66 TCTTT-TTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
* * * *
34203712 AAAAAAAAATTTTAGGTGCTGGTCTGTCAATGGCCGACACCCAGTACAAATTTTTTTAAAAAAA-
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAA--TTTTAAAAAAAAT
* *
34203776 TTTC-TTTTTTTTCGTGTCAGAGTCAGATATAAATATATGAAAAAAATTA
64 TTTCTTTTTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
*
34203825 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAA-TTAAAAGAAAAATT
1 AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAA-AAAAATT
34203889 T
65 T
34203890 CGTGTCAGAG
Statistics
Matches: 361, Mismatches: 23, Indels: 29
0.87 0.06 0.07
Matches are distributed among these distances:
109 13 0.04
110 82 0.23
111 72 0.20
112 81 0.22
113 90 0.25
114 20 0.06
115 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (113 bp):
AAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAAATTTTAAAAAAAATTT
TCTTTTTTTTTCATGTCAGAGTCAGATATAAATATACGAAAAAAATTA
Found at i:34203891 original size:102 final size:102
Alignment explanation
Indices: 34203674--34203933 Score: 310
Period size: 113 Copynumber: 2.5 Consensus size: 102
34203664 TTCTTTGTTT
* * *
34203674 TTTCATGTCAGAGTCAGATATAAATATACAAAAAAATT-AAAAAAAAATTTTAGGTGCTGGTCTG
1 TTTCGTGTCAGAGTCAGATATAAATATAGAAAAAAATTAAAAAAAAAATTTTAGGTGCTGGCCTG
**
34203738 TCAATGGCCGACACCCAGTACAAATTTTTTTAAAAAAATTTCTTTTT
66 TCAATGGCCGACACCCAGTACAAA----TTTAAAAAAA------TAA
*
34203785 TTTCGTGTCAGAGTCAGATATAAATATATGAAAAAAATTAAAAAAAAAATTTTGGGTGCTGGCCT
1 TTTCGTGTCAGAGTCAGATATAAATATA-GAAAAAAATTAAAAAAAAAATTTTAGGTGCTGGCCT
*
34203850 GTCAATGGCCGGCACCCAGTACAAA-TTAAAAGAAA-AA
65 GTCAATGGCCGACACCCAGTACAAATTTAAAA-AAATAA
*
34203887 TTTCGTGTCAGAGTCAGATACAAATATACGAAAAAAATTAAAAAAAA
1 TTTCGTGTCAGAGTCAGATATAAATATA-GAAAAAAATTAAAAAAAA
34203934 GTAACTTTTT
Statistics
Matches: 137, Mismatches: 9, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
102 45 0.33
108 6 0.04
109 3 0.02
111 27 0.20
112 9 0.07
113 47 0.34
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (102 bp):
TTTCGTGTCAGAGTCAGATATAAATATAGAAAAAAATTAAAAAAAAAATTTTAGGTGCTGGCCTG
TCAATGGCCGACACCCAGTACAAATTTAAAAAAATAA
Found at i:34204208 original size:19 final size:18
Alignment explanation
Indices: 34204182--34204222 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
34204172 TTAGTGATTG
*
34204182 TTTTTAAATTTAAATTAT
1 TTTTTAAATATAAATTAT
*
34204200 TTTTATAAATATAATTTAT
1 TTTT-TAAATATAAATTAT
34204219 TTTT
1 TTTT
34204223 GGATTAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTAAATATAAATTAT
Found at i:34205693 original size:193 final size:195
Alignment explanation
Indices: 34205241--34205705 Score: 475
Period size: 193 Copynumber: 2.4 Consensus size: 195
34205231 ACAAATTCTC
* * * ** *
34205241 AATGAATATCAATGACTTAAACCAAATAAAAGGTCCCAAACTTAGTCTATTATGTTCATTAACAT
1 AATGAAAACCAATGACTTAAACC-CATAAAAAAT-TCAAACTTAGTCTA-TATGTTCATTAACAT
* * *
34205306 CATA-A-AAAAACACCAATTACATCCTAATAACAATTTCAACTCCAAAGTTGACTAAAGAAGAAG
63 CA-ACATAAAAACACCAATTACATCCTAATAACAATTCCAACCCCAAAGTT-ACTAAAGAAAAAG
* * ** *
34205369 CTTTGCAGGATATGAAAACATAAGTGCATTTCCATTCAAGTAAATTGTTGTGTTGTAATCACAAA
126 CATTGCAGGATATCAAAACATAAGTGCATTTCCATTCAAGTAAATAATAGTGTTGTAATCACAAA
*
34205434 GTTCA
191 GTCCA
* *
34205439 AATGAAAACCAATGACTTGAACCCATAAAAAATTC-AACTTAGTCTAT-TGTATTCGTTAACATC
1 AATGAAAACCAATGACTTAAACCCATAAAAAATTCAAACTTAGTCTATATG--TTCATTAACATC
* * **
34205502 AACATAAAAACATCAATTACTTCCTAATAACAATTCCAACCCCAAAGTT-C-AATTAAAAAGCAT
64 AACATAAAAACACCAATTACATCCTAATAACAATTCCAACCCCAAAGTTACTAAAGAAAAAGCAT
* *
34205565 TGCAGGATA-CACAAATGCA-AA-TGTATTTCCATTCAAGT-AATAATAGTGTTTTAATCACAAA
129 TGCAGGATATCA-AAA--CATAAGTGCATTTCCATTCAAGTAAATAATAGTGTTGTAATCACAAA
34205626 GCTCCA
191 G-TCCA
* * * * * *
34205632 AATGAAAACC-ATGACTTAAACCCATTATAGATTACAAACTTAGTCCATATGCTCATTAACATAA
1 AATGAAAACCAATGACTTAAACCCATAAAAAATT-CAAACTTAGTCTATATGTTCATTAACATCA
34205696 ACATTAAAAA
65 ACA-TAAAAA
34205706 AACATAAAAT
Statistics
Matches: 224, Mismatches: 31, Indels: 28
0.79 0.11 0.10
Matches are distributed among these distances:
192 40 0.18
193 66 0.29
194 22 0.10
195 28 0.12
196 41 0.18
197 7 0.03
198 20 0.09
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.28
Consensus pattern (195 bp):
AATGAAAACCAATGACTTAAACCCATAAAAAATTCAAACTTAGTCTATATGTTCATTAACATCAA
CATAAAAACACCAATTACATCCTAATAACAATTCCAACCCCAAAGTTACTAAAGAAAAAGCATTG
CAGGATATCAAAACATAAGTGCATTTCCATTCAAGTAAATAATAGTGTTGTAATCACAAAGTCCA
Found at i:34207127 original size:7 final size:7
Alignment explanation
Indices: 34207115--34207268 Score: 80
Period size: 7 Copynumber: 21.6 Consensus size: 7
34207105 CTAATGAATA
34207115 TAAACCC
1 TAAACCC
34207122 TAAACCAC
1 TAAACC-C
*
34207130 TAACCCC
1 TAAACCC
* *
34207137 T-ATCCTT
1 TAAACC-C
34207144 TAAACCC
1 TAAACCC
* *
34207151 TAAATCA
1 TAAACCC
*
34207158 TAAACCA
1 TAAACCC
**
34207165 TAAACTA
1 TAAACCC
34207172 TAAACTCC
1 TAAAC-CC
*
34207180 -AAACTCT
1 TAAAC-CC
*
34207187 TAACCCC
1 TAAACCC
*
34207194 TAACCCC
1 TAAACCC
*
34207201 TAAACCT
1 TAAACCC
34207208 TAAACCC
1 TAAACCC
34207215 T-AACCC
1 TAAACCC
*
34207221 TTAAACCA
1 -TAAACCC
34207229 TAAACCC
1 TAAACCC
*
34207236 TAATCCC
1 TAAACCC
34207243 TAAACCC
1 TAAACCC
* *
34207250 ATAATCCA
1 -TAAACCC
*
34207258 TAAACCT
1 TAAACCC
34207265 TAAA
1 TAAA
34207269 ATAGTAACTC
Statistics
Matches: 114, Mismatches: 25, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
6 8 0.07
7 85 0.75
8 21 0.18
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (7 bp):
TAAACCC
Found at i:34207168 original size:21 final size:20
Alignment explanation
Indices: 34207144--34207325 Score: 73
Period size: 21 Copynumber: 8.6 Consensus size: 20
34207134 CCCTATCCTT
*
34207144 TAAACCCTAAATCATAAACCA
1 TAAACCCTAAA-CCTAAACCA
** * *
34207165 TAAACTATAAACTCCAAACTCT
1 TAAACCCTAAAC-CTAAAC-CA
* * *
34207187 TAACCCCTAACCCCTAAACCT
1 TAAACCCTAA-ACCTAAACCA
*
34207208 TAAACCCTAACCCTTAAACCA
1 TAAACCCTAAACC-TAAACCA
*
34207229 TAAACCCTAATCCCTAAACCCA
1 TAAACCCTAA-ACCTAAA-CCA
* *
34207251 TAATCCATAAACCTTAAA--A
1 TAAACCCTAAACC-TAAACCA
* *
34207270 TAGTAACTCCT-AACTTTAAACCT
1 TA--AAC-CCTAAAC-CTAAACCA
* * *
34207293 TAAATCATATACCCTAAACCA
1 TAAACCCTA-AACCTAAACCA
34207314 TAAACCCTAAAC
1 TAAACCCTAAAC
34207326 TATAATGATA
Statistics
Matches: 119, Mismatches: 27, Indels: 31
0.67 0.15 0.18
Matches are distributed among these distances:
19 3 0.03
20 8 0.07
21 70 0.59
22 35 0.29
23 3 0.03
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.23
Consensus pattern (20 bp):
TAAACCCTAAACCTAAACCA
Found at i:34207325 original size:14 final size:14
Alignment explanation
Indices: 34207114--34207330 Score: 113
Period size: 14 Copynumber: 15.3 Consensus size: 14
34207104 ACTAATGAAT
34207114 ATAAACCCTAAACC
1 ATAAACCCTAAACC
* *
34207128 ACTAACCCCT-ATCC
1 A-TAAACCCTAAACC
* *
34207142 TTTAAACCCTAAATC
1 -ATAAACCCTAAACC
* *
34207157 ATAAACCATAAACT
1 ATAAACCCTAAACC
34207171 ATAAACTCC-AAACTC
1 ATAAAC-CCTAAAC-C
* * *
34207186 TTAACCCCTAACCC
1 ATAAACCCTAAACC
* *
34207200 CTAAACCTTAAACC
1 ATAAACCCTAAACC
*
34207214 CT-AACCCTTAAACC
1 ATAAACCC-TAAACC
*
34207228 ATAAACCCTAATCC
1 ATAAACCCTAAACC
* *
34207242 CTAAACCCATAATCC
1 ATAAACCC-TAAACC
*
34207257 ATAAACCTTAAA--
1 ATAAACCCTAAACC
*
34207269 ATAGTAACTCCT-AACT
1 ATA--AAC-CCTAAACC
* * *
34207285 TTAAACCTTAAATC
1 ATAAACCCTAAACC
*
34207299 ATATACCCTAAACC
1 ATAAACCCTAAACC
*
34207313 ATAAACCCTAAACT
1 ATAAACCCTAAACC
34207327 ATAA
1 ATAA
34207331 TGATAATTAA
Statistics
Matches: 151, Mismatches: 37, Indels: 30
0.69 0.17 0.14
Matches are distributed among these distances:
12 3 0.02
13 6 0.04
14 104 0.69
15 36 0.24
16 2 0.01
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.24
Consensus pattern (14 bp):
ATAAACCCTAAACC
Found at i:34207679 original size:40 final size:40
Alignment explanation
Indices: 34207616--34207939 Score: 234
Period size: 40 Copynumber: 8.2 Consensus size: 40
34207606 TTTTTTGAGA
* *
34207616 CGTTTTTCAAAAAGTGCCGCTAATGCTCGACCTATAGCGG
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
*
34207656 CGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGG
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
* * * *
34207696 CATTTTGACAAAAAACGCCGCTAATGCTCGATCTATAGCAG
1 CGTTTT-TCAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
* * *
34207737 TGTTTTTCAAAAAGCGACGCTAATGC-C-A-CTA-A--AG
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
* ** ** ** * * *
34207771 C--TTATCATAAAA-CGAAGGCATTGTGCTTAAGTTTTTTGCGG
1 CGTTTTTCA-AAAAGCG-CCGC-TAATGCTCGA-TCTATAGCGG
* * *
34207812 CGTTTTTTCAAAAAGCGCCGTTAATGCTCAATCTACAGCGG
1 CG-TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
* * * **
34207853 CTTTTTTTAAAAAGCGCCGCTAATGCTCGTTCTATATTGG
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
* * * **
34207893 CATTTTTCAAAAAGCACCGCTAATGCTCAATCTATATTGG
1 CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
34207933 CGTTTTT
1 CGTTTTT
34207940 TGTCAAAACG
Statistics
Matches: 221, Mismatches: 48, Indels: 30
0.74 0.16 0.10
Matches are distributed among these distances:
32 7 0.03
33 7 0.03
34 6 0.03
36 2 0.01
37 3 0.01
38 2 0.01
39 1 0.00
40 131 0.59
41 43 0.19
42 7 0.03
43 5 0.02
44 7 0.03
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (40 bp):
CGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGG
Found at i:34207867 original size:197 final size:196
Alignment explanation
Indices: 34207492--34207928 Score: 576
Period size: 197 Copynumber: 2.2 Consensus size: 196
34207482 CAAATATTTT
* * *
34207492 TCTATAGCGGCGTTTTTCAAAAAGCG-C-CTAATGCTCGATCTATAGCGGCGTTTTTTAAAAAGC
1 TCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCAGCGTTTTTCAAAAAGC
* * * *
34207555 GTCACTAATGCCACTAAAGTTCAACATAAAACGATGGCGTTGTGCTTAATTTTTTTTGAGACGTT
66 GACACTAATGCCACTAAAGTTCAACATAAAACGAAGGCATTGTGCTTAATGTTTTTTGAGACGTT
* * *
34207620 TTTCAAAAAGTGCCGCTAATGCTCGACCTATAGCGGCGTTTTTCAAAAAGCGCCACTAATGCTCG
131 TTTCAAAAAGCGCCGCTAATGCTCAACCTACAGCGGCGTTTTTCAAAAAGCGCCACTAATGCTCG
34207685 A
196 A
* * *
34207686 TCTATAGCGGCATTTTGACAAAAAACGCCGCTAATGCTCGATCTATAGCAGTGTTTTTCAAAAAG
1 TCTATAGCGGCATTTT-TCAAAAAGCGCCGCTAATGCTCGATCTATAGCAGCGTTTTTCAAAAAG
* * * *
34207751 CGACGCTAATGCCACTAAAGCTT-ATCATAAAACGAAGGCATTGTGCTTAA-GTTTTTTGCGGCG
65 CGACACTAATGCCACTAAAG-TTCAACATAAAACGAAGGCATTGTGCTTAATGTTTTTTGAGACG
* * * * *
34207814 TTTTTTCAAAAAGCGCCGTTAATGCTCAATCTACAGCGGCTTTTTTTAAAAAGCGCCGCTAATGC
129 -TTTTTCAAAAAGCGCCGCTAATGCTCAACCTACAGCGGCGTTTTTCAAAAAGCGCCACTAATGC
*
34207879 TCGT
193 TCGA
** * *
34207883 TCTATATTGGCATTTTTCAAAAAGCACCGCTAATGCTCAATCTATA
1 TCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
34207929 TTGGCGTTTT
Statistics
Matches: 209, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
194 15 0.07
195 8 0.04
196 37 0.18
197 147 0.70
198 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (196 bp):
TCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCAGCGTTTTTCAAAAAGC
GACACTAATGCCACTAAAGTTCAACATAAAACGAAGGCATTGTGCTTAATGTTTTTTGAGACGTT
TTTCAAAAAGCGCCGCTAATGCTCAACCTACAGCGGCGTTTTTCAAAAAGCGCCACTAATGCTCG
A
Found at i:34208696 original size:14 final size:13
Alignment explanation
Indices: 34208675--34208711 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
34208665 AAATTAACTA
*
34208675 ATAATTATAAGTT
1 ATAATTATAAATT
34208688 ATAAATTATAAATT
1 AT-AATTATAAATT
34208702 ATAATTATAA
1 ATAATTATAA
34208712 TCATAAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (13 bp):
ATAATTATAAATT
Found at i:34208709 original size:6 final size:6
Alignment explanation
Indices: 34208675--34208717 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
34208665 AAATTAACTA
*
34208675 ATAATT ATAAGTT ATAAATT ATAAATT ATAATT ATAATC ATAA
1 ATAATT ATAA-TT AT-AATT AT-AATT ATAATT ATAATT ATAA
34208718 AAACTTTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
6 17 0.50
7 15 0.44
8 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (6 bp):
ATAATT
Found at i:34213315 original size:84 final size:84
Alignment explanation
Indices: 34213174--34213334 Score: 304
Period size: 84 Copynumber: 1.9 Consensus size: 84
34213164 GTGAAGAAGG
34213174 TGAAAATAACGGACGAGATTAAACGTGTGGAGCACAAAAAGAGGGATAAGGAGAGGGGCCATAAT
1 TGAAAATAACGGACGAGATTAAACGTGTGGAGCACAAAAAGAGGGATAAGGAGAGGGGCCATAAT
34213239 AAGTATAATATGTATAATA
66 AAGTATAATATGTATAATA
* *
34213258 TGAAAATAACGGAGGAGATTAAACGTGTGGAGCACGAAAAGAGGGATAAGGAGAGGGGCCATAAT
1 TGAAAATAACGGACGAGATTAAACGTGTGGAGCACAAAAAGAGGGATAAGGAGAGGGGCCATAAT
34213323 AAGTATAATATG
66 AAGTATAATATG
34213335 GATTCGGGTC
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
84 75 1.00
ACGTcount: A:0.44, C:0.08, G:0.30, T:0.18
Consensus pattern (84 bp):
TGAAAATAACGGACGAGATTAAACGTGTGGAGCACAAAAAGAGGGATAAGGAGAGGGGCCATAAT
AAGTATAATATGTATAATA
Found at i:34215557 original size:41 final size:42
Alignment explanation
Indices: 34215478--34215560 Score: 107
Period size: 41 Copynumber: 2.0 Consensus size: 42
34215468 ATCCTAGAAA
* *
34215478 AAAAATAATTTAAAAAGAGGAGAAAATAATATTGGGTTGTTG
1 AAAAATAATTTAAAAAGAGGAGAAAATAATAATAGGTTGTTG
* *
34215520 AAAAA-AATTTAAAATGAGGAGAAGATAA-ACATAGGTTGTTG
1 AAAAATAATTTAAAAAGAGGAGAAAATAATA-ATAGGTTGTTG
34215561 GATTTACCCA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 1 0.03
41 30 0.83
42 5 0.14
ACGTcount: A:0.51, C:0.01, G:0.22, T:0.27
Consensus pattern (42 bp):
AAAAATAATTTAAAAAGAGGAGAAAATAATAATAGGTTGTTG
Found at i:34220456 original size:6 final size:6
Alignment explanation
Indices: 34220430--34220481 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
34220420 CTAATTTTAT
* * * *
34220430 AAAAGA AAAA-A AATAATA AAAAGA AAAATA AAAAGA AGAAGA AGAAGA
1 AAAAGA AAAAGA AA-AAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
34220478 AAAA
1 AAAA
34220482 TAAATAAGTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
5 3 0.08
6 33 0.85
7 3 0.08
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (6 bp):
AAAAGA
Found at i:34220458 original size:15 final size:15
Alignment explanation
Indices: 34220430--34220469 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
34220420 CTAATTTTAT
*
34220430 AAAAGAAAAAAAATA
1 AAAAGAAGAAAAATA
34220445 ATAAA-AAGAAAAATA
1 A-AAAGAAGAAAAATA
34220460 AAAAGAAGAA
1 AAAAGAAGAA
34220470 GAAGAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 3 0.14
15 16 0.73
16 3 0.14
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.07
Consensus pattern (15 bp):
AAAAGAAGAAAAATA
Found at i:34244029 original size:35 final size:35
Alignment explanation
Indices: 34243990--34244059 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
34243980 TAAAATGCTT
***
34243990 ATGTTCAAGCTCTTAAAGTGTGCAAACTAGTTTAA
1 ATGTTCAAGCTCTTAAAGTGCAAAAACTAGTTTAA
**
34244025 ATGTTTGAGCTCTTAAAGTGCAAAAACTAGTTTAA
1 ATGTTCAAGCTCTTAAAGTGCAAAAACTAGTTTAA
34244060 TATACTACAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (35 bp):
ATGTTCAAGCTCTTAAAGTGCAAAAACTAGTTTAA
Found at i:34248841 original size:25 final size:25
Alignment explanation
Indices: 34248813--34248880 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
34248803 GTTGTAGATT
*
34248813 GGTATGCTCTCATAAGCTATAAATC
1 GGTATGCTCTCACAAGCTATAAATC
* * *
34248838 GGTATGCTCTTACGAGTTATAAATC
1 GGTATGCTCTCACAAGCTATAAATC
* *
34248863 AGTATGCTCTCACGAGCT
1 GGTATGCTCTCACAAGCT
34248881 GTGGAGTATC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (25 bp):
GGTATGCTCTCACAAGCTATAAATC
Found at i:34249152 original size:16 final size:17
Alignment explanation
Indices: 34249120--34249153 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
34249110 CTATACGGAT
*
34249120 AAATTTAATTCAATTCA
1 AAATATAATTCAATTCA
34249137 AAATATAATT-AATTCA
1 AAATATAATTCAATTCA
34249153 A
1 A
34249154 TTTAATCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATATAATTCAATTCA
Found at i:34251879 original size:61 final size:61
Alignment explanation
Indices: 34251814--34252074 Score: 301
Period size: 61 Copynumber: 4.3 Consensus size: 61
34251804 ACCTTCCCTA
* * *
34251814 AGTTTTTCCATAAAGGTGTTCCTTAACATTCAATACTCACCACAAAGGCTTTCATGTCCAG
1 AGTTTTTCCACAAAGGCGTTCCTTAACATTCAATACTCACCACAAAGGCTTTCCTGTCCAG
* * * * * *
34251875 AGTTTTGCCACAAAGGCGTTCCTTAACATTCAGTACTCGCCACAAAGGCTTTCCTATCTAT
1 AGTTTTTCCACAAAGGCGTTCCTTAACATTCAATACTCACCACAAAGGCTTTCCTGTCCAG
* ** * *
34251936 AGGTTTTCCACAAAAACATTCCTTAACATTCAATACTCACCGCAAAGGCTTTCCTG-CCTAG
1 AGTTTTTCCACAAAGGCGTTCCTTAACATTCAATACTCACCACAAAGGCTTTCCTGTCC-AG
* * * * *
34251997 A-TTTTTGCCACAAAAGTGTTCCTTAACATTCAGTACTCATCACAAAGGCTTTCTTGTCCAG
1 AGTTTTT-CCACAAAGGCGTTCCTTAACATTCAATACTCACCACAAAGGCTTTCCTGTCCAG
* *
34252058 ATTTTTTCCATAAAGGC
1 AGTTTTTCCACAAAGGC
34252075 TTTCTTGTCC
Statistics
Matches: 165, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
60 5 0.03
61 153 0.93
62 7 0.04
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (61 bp):
AGTTTTTCCACAAAGGCGTTCCTTAACATTCAATACTCACCACAAAGGCTTTCCTGTCCAG
Found at i:34252065 original size:122 final size:122
Alignment explanation
Indices: 34251832--34252067 Score: 339
Period size: 122 Copynumber: 1.9 Consensus size: 122
34251822 CATAAAGGTG
*
34251832 TTCCTTAACATTCAATACTCACCACAAAGGCTTTCATGTCCAGAGTTTTGCCACAAAGGCGTTCC
1 TTCCTTAACATTCAATACTCACCACAAAGGCTTTCATGTCCAGAGTTTTGCCACAAAAGCGTTCC
* * *
34251897 TTAACATTCAGTACTCGCCACAAAGGCTTTCCTATCTATAGGTTTTCCACAAAAACA
66 TTAACATTCAGTACTCACCACAAAGGCTTTCCTATCCAGAGGTTTTCCACAAAAACA
* * * *
34251954 TTCCTTAACATTCAATACTCACCGCAAAGGCTTTCCTG-CCTAGATTTTTGCCACAAAAGTGTTC
1 TTCCTTAACATTCAATACTCACCACAAAGGCTTTCATGTCC-AGAGTTTTGCCACAAAAGCGTTC
* * * **
34252018 CTTAACATTCAGTACTCATCACAAAGGCTTTCTTGTCCAGATTTTTTCCA
65 CTTAACATTCAGTACTCACCACAAAGGCTTTCCTATCCAGAGGTTTTCCA
34252068 TAAAGGCTTT
Statistics
Matches: 100, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
121 2 0.02
122 98 0.98
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (122 bp):
TTCCTTAACATTCAATACTCACCACAAAGGCTTTCATGTCCAGAGTTTTGCCACAAAAGCGTTCC
TTAACATTCAGTACTCACCACAAAGGCTTTCCTATCCAGAGGTTTTCCACAAAAACA
Found at i:34253543 original size:20 final size:20
Alignment explanation
Indices: 34253518--34253557 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
34253508 ATATGGGTTA
34253518 GAACACTTACCATTTCATTT
1 GAACACTTACCATTTCATTT
34253538 GAACACTTACCATTTCATTT
1 GAACACTTACCATTTCATTT
34253558 CCTTTCCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (20 bp):
GAACACTTACCATTTCATTT
Found at i:34253619 original size:21 final size:23
Alignment explanation
Indices: 34253575--34253619 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
34253565 TTTACATCAT
34253575 TGCTCACACGAGCTGTGAATGGGTC
1 TGCTCACACGAGC-GT-AATGGGTC
34253600 TGCTCACACGAGC-T-ATGGGT
1 TGCTCACACGAGCGTAATGGGT
34253620 TAGAATGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.30
23 1 0.05
25 13 0.65
ACGTcount: A:0.20, C:0.24, G:0.31, T:0.24
Consensus pattern (23 bp):
TGCTCACACGAGCGTAATGGGTC
Found at i:34256113 original size:341 final size:341
Alignment explanation
Indices: 34255484--34256163 Score: 1279
Period size: 341 Copynumber: 2.0 Consensus size: 341
34255474 CTGTCACTAC
* *
34255484 AATCATGAATGTTTTTATCCGTATCATTTCTAATCGGGTCTTCGTTTACAGTAGTATTTTCAACA
1 AATCATGAATGCTTTTATCCGTATCATTTCTAATAGGGTCTTCGTTTACAGTAGTATTTTCAACA
* *
34255549 GGACCAAGGCGGCTATCCGTTGATTTACTTAGCCCACATCTGTATTCTAATTCTCCCTTAGACAA
66 GGACCAAGGCGGCTATCCATTGATTTACTTAGCCCACATATGTATTCTAATTCTCCCTTAGACAA
* * *
34255614 GACCAAATTGAACCATGATTTTTCCATAGAGCTTTTTTGCTTGTATTTTCATGAAAGTGCAGTAG
131 GACCAAATTGAACCATGATTTTTCCATAGAGCTTTTTTGCTTGTATTTCCATGAAAGTACAATAG
*
34255679 ATGAATAGTCATTCGATGAAAAATCAATTGAATATTTTATTTTCTATCAGAATATGCATACTAGA
196 ATGAATAGTCATTCGATGAAAAATCAATTGAATATTTTATTTTCTATCAGAATACGCATACTAGA
*
34255744 TACAATCACTAGGGTTATTAATGAACAGTGAGTGAATATTGAAAGAAACGATTCTCTTTTGTGAG
261 TACAATCACTAGGGTTATTAACGAACAGTGAGTGAATATTGAAAGAAACGATTCTCTTTTGTGAG
34255809 AACCTAGAGTAGCAAT
326 AACCTAGAGTAGCAAT
34255825 AATCATGAATGCTTTTATCCGTATCATTTCTAATAGGGTCTTCGTTTACAGTAGTATTTTCAACA
1 AATCATGAATGCTTTTATCCGTATCATTTCTAATAGGGTCTTCGTTTACAGTAGTATTTTCAACA
34255890 GGACCAAGGCGGCTATCCATTGATTTACTTAGCCCACATATGTATTCTAATTCTCCCTTAGACAA
66 GGACCAAGGCGGCTATCCATTGATTTACTTAGCCCACATATGTATTCTAATTCTCCCTTAGACAA
34255955 GACCAAATTGAACCATGATTTTTCCATAGAGCTTTTTTGCTTGTATTTCCATGAAAGTACAATAG
131 GACCAAATTGAACCATGATTTTTCCATAGAGCTTTTTTGCTTGTATTTCCATGAAAGTACAATAG
34256020 ATGAATAGTCATTCGATGAAAAATCAATTGAATATTTTATTTTCTATCAGAATACGCATACTAGA
196 ATGAATAGTCATTCGATGAAAAATCAATTGAATATTTTATTTTCTATCAGAATACGCATACTAGA
34256085 TACAATCACTAGGGTTATTAACGAACAGTGAGTGAATATTGAAAGAAACGATTCTCTTTTGTGAG
261 TACAATCACTAGGGTTATTAACGAACAGTGAGTGAATATTGAAAGAAACGATTCTCTTTTGTGAG
34256150 AACCTAGAGTAGCA
326 AACCTAGAGTAGCA
34256164 GTTCATTATA
Statistics
Matches: 330, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
341 330 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (341 bp):
AATCATGAATGCTTTTATCCGTATCATTTCTAATAGGGTCTTCGTTTACAGTAGTATTTTCAACA
GGACCAAGGCGGCTATCCATTGATTTACTTAGCCCACATATGTATTCTAATTCTCCCTTAGACAA
GACCAAATTGAACCATGATTTTTCCATAGAGCTTTTTTGCTTGTATTTCCATGAAAGTACAATAG
ATGAATAGTCATTCGATGAAAAATCAATTGAATATTTTATTTTCTATCAGAATACGCATACTAGA
TACAATCACTAGGGTTATTAACGAACAGTGAGTGAATATTGAAAGAAACGATTCTCTTTTGTGAG
AACCTAGAGTAGCAAT
Found at i:34261728 original size:29 final size:30
Alignment explanation
Indices: 34261684--34261744 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
34261674 GAGAGGTGGG
*
34261684 ATGGGAAGGGAATAAAAGTTTTAGG-GAAAA
1 ATGGGAAGGGAATAAAAATTTT-GGAGAAAA
*
34261714 ATGGG-AGGGAGTAAAAATTTTGGAGAAAA
1 ATGGGAAGGGAATAAAAATTTTGGAGAAAA
34261743 AT
1 AT
34261745 AAAAGGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 2 0.07
29 21 0.75
30 5 0.18
ACGTcount: A:0.46, C:0.00, G:0.33, T:0.21
Consensus pattern (30 bp):
ATGGGAAGGGAATAAAAATTTTGGAGAAAA
Found at i:34265147 original size:25 final size:26
Alignment explanation
Indices: 34265099--34265152 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
34265089 CATAATTGAA
* *
34265099 ATGAAAGAGATTGATTTTGTATAT-T
1 ATGAAAGAGATTGATTATGAATATAT
* *
34265124 ATGAAATATATTGATTATGAATATAT
1 ATGAAAGAGATTGATTATGAATATAT
34265150 ATG
1 ATG
34265153 TATTGAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.43
Consensus pattern (26 bp):
ATGAAAGAGATTGATTATGAATATAT
Found at i:34270720 original size:3 final size:3
Alignment explanation
Indices: 34270712--34270750 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
34270702 TGTATTTTAT
*
34270712 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
34270751 GTGCATTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Done.