Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 109 of 211
Found at i:34271580 original size:25 final size:25
Alignment explanation
Indices: 34271532--34271580 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
34271522 CATAATTTAA
* * *
34271532 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
34271557 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
34271581 ATATCTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:34275324 original size:50 final size:50
Alignment explanation
Indices: 34275208--34275386 Score: 180
Period size: 50 Copynumber: 3.5 Consensus size: 50
34275198 AGATCCCATG
* ** *
34275208 TAAGATCATGTCTGGGACATGGCGTTGGCATTATTGAGGTTATGAGAGGTCCCACG
1 TAAGACCATGTCTGGGACATGGCGTTGGC---ACCGA-G--ATGAGAGGTCCCACA
*
34275264 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCA
1 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCACA
* * ** *
34275314 TAAGACCATGTCTGGGACATGGC-ATGGACACCGATATGAGAACTCCCATA
1 TAAGACCATGTCTGGGACATGGCGTTGG-CACCGAGATGAGAGGTCCCACA
* *
34275364 TAAGACCATATCTGGGATATGGC
1 TAAGACCATGTCTGGGACATGGC
34275387 ATTAGCAGTA
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
49 3 0.03
50 74 0.68
52 1 0.01
53 3 0.03
56 28 0.26
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCACA
Found at i:34275422 original size:49 final size:49
Alignment explanation
Indices: 34275357--34275484 Score: 211
Period size: 49 Copynumber: 2.6 Consensus size: 49
34275347 ATATGAGAAC
*
34275357 TCCCATATAAGACCATATCTGGGATATGGCATTAGCAGTACAGGAAACA
1 TCCCATGTAAGACCATATCTGGGATATGGCATTAGCAGTACAGGAAACA
* *
34275406 TCCCATGTAAGACCATATCTGGGATATGACATTGGCAGTACAGGAAACA
1 TCCCATGTAAGACCATATCTGGGATATGGCATTAGCAGTACAGGAAACA
* *
34275455 TCCCATGTAAGACCATGTCTGGGACATGGC
1 TCCCATGTAAGACCATATCTGGGATATGGC
34275485 TTTGGCATGT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.23
Consensus pattern (49 bp):
TCCCATGTAAGACCATATCTGGGATATGGCATTAGCAGTACAGGAAACA
Found at i:34275490 original size:49 final size:49
Alignment explanation
Indices: 34275314--34275491 Score: 209
Period size: 49 Copynumber: 3.6 Consensus size: 49
34275304 AGGTCCCCCA
* * * *
34275314 TAAGACCATGTCTGGGACATGGCA-TGGACACCG-ATATGAGAAC-TCCCATA
1 TAAGACCATATCTGGGACATGGCATTGG-CA--GTACAGGA-AACATCCCATG
* *
34275364 TAAGACCATATCTGGGATATGGCATTAGCAGTACAGGAAACATCCCATG
1 TAAGACCATATCTGGGACATGGCATTGGCAGTACAGGAAACATCCCATG
* *
34275413 TAAGACCATATCTGGGATATGACATTGGCAGTACAGGAAACATCCCATG
1 TAAGACCATATCTGGGACATGGCATTGGCAGTACAGGAAACATCCCATG
* *
34275462 TAAGACCATGTCTGGGACATGGCTTTGGCA
1 TAAGACCATATCTGGGACATGGCATTGGCA
34275492 TGTTATTATC
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
48 4 0.04
49 83 0.73
50 24 0.21
51 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.22
Consensus pattern (49 bp):
TAAGACCATATCTGGGACATGGCATTGGCAGTACAGGAAACATCCCATG
Found at i:34276283 original size:17 final size:19
Alignment explanation
Indices: 34276261--34276297 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
34276251 AGGAAAAAGA
34276261 ATTAT-ATATTA-TGAGAT
1 ATTATAATATTAGTGAGAT
*
34276278 ATTATAATTTTAGTGAGAT
1 ATTATAATATTAGTGAGAT
34276297 A
1 A
34276298 GGGTCAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 5 0.29
18 5 0.29
19 7 0.41
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.46
Consensus pattern (19 bp):
ATTATAATATTAGTGAGAT
Found at i:34282903 original size:50 final size:51
Alignment explanation
Indices: 34282779--34283211 Score: 257
Period size: 50 Copynumber: 8.6 Consensus size: 51
34282769 GAGATCTCAT
* * *
34282779 GTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGTCCCAC
1 GTAAGACCATGTCTGGGACATGGCATTGGC---ATCGAGGATAAGAG-GTCCCAC
* *
34282834 GTAAGACCATGTCTAGGACATGGCATTGGCATCGA-GATAAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCATCGAGGATAAGAGGTCCCAC
* * * * * ** *
34282884 ATAAGACCATGTCTGGGACATGCCATTGGCACCGA-TATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCATCGAGGATAAGAGGTCCCAC
* * ** * *
34282934 GTAAGACCATATCTGGGATATGGCATTGGCAGTATAGGA-AACA--TCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCA-TCGAGGATAAGAGGTCCCAC
* * * ** * *
34282983 GTAAGACCATATCTAGGATATGGCATTGGCAGTATAGGA-AACA--TCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCA-TCGAGGATAAGAGGTCCCAC
* * * *
34283032 GTAAGACCATGTCTGGGACATGGCGTTCGCA-CTGA-GATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCATC-GAGGATAAGAGGTCCCAC
* * * * * ** * *
34283082 GTAATACCATGTCTGGGACGTGGCA-TGGACACCGA-TATGAGAACTCCAAT
1 GTAAGACCATGTCTGGGACATGGCATTGG-CATCGAGGATAAGAGGTCCCAC
* * ** * *
34283132 GTAAGACCATATCTGGGATATGGCATTGGCAGTATAGGA-AACA--TCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCA-TCGAGGATAAGAGGTCCCAC
* *
34283181 GTAAGACCATATCTGGGATATGGCATTGGCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCA
34283212 GTACTTGAAA
Statistics
Matches: 309, Mismatches: 58, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
47 2 0.01
48 3 0.01
49 118 0.38
50 135 0.44
51 16 0.05
52 6 0.02
55 29 0.09
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23
Consensus pattern (51 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCATCGAGGATAAGAGGTCCCAC
Found at i:34282993 original size:49 final size:49
Alignment explanation
Indices: 34282885--34283247 Score: 360
Period size: 49 Copynumber: 7.3 Consensus size: 49
34282875 AGGTCCCCCA
* * *
34282885 TAAGACCATGTCTGGGACATGCCATTGGCACCG-ATATGAGAAC-TCCCATG
1 TAAGACCATATCTGGGATATGGCATTGGCA--GTATATGA-AACATCCCATG
*
34282935 TAAGACCATATCTGGGATATGGCATTGGCAGTATAGGAAACATCCCATG
1 TAAGACCATATCTGGGATATGGCATTGGCAGTATATGAAACATCCCATG
* *
34282984 TAAGACCATATCTAGGATATGGCATTGGCAGTATAGGAAACATCCCATG
1 TAAGACCATATCTGGGATATGGCATTGGCAGTATATGAAACATCCCATG
* * * * * * * ** **
34283033 TAAGACCATGTCTGGGACATGGCGTTCGCACTGAGATGAGAGGTCCCCCG
1 TAAGACCATATCTGGGATATGGCATTGGCAGT-ATATGAAACATCCCATG
* * ** *
34283083 TAATACCATGTCTGGGACGTGGCA-TGGACACCG-ATATGAGAAC-TCCAATG
1 TAAGACCATATCTGGGATATGGCATTGG-CA--GTATATGA-AACATCCCATG
*
34283133 TAAGACCATATCTGGGATATGGCATTGGCAGTATAGGAAACATCCCATG
1 TAAGACCATATCTGGGATATGGCATTGGCAGTATATGAAACATCCCATG
* *
34283182 TAAGACCATATCTGGGATATGGCATTGGCAGTACT-TGAAACAACTCATG
1 TAAGACCATATCTGGGATATGGCATTGGCAGTA-TATGAAACATCCCATG
* *
34283231 TAAGATCATGTCTGGGA
1 TAAGACCATATCTGGGA
34283248 CATGACTTTG
Statistics
Matches: 262, Mismatches: 40, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
48 8 0.03
49 158 0.60
50 92 0.35
51 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (49 bp):
TAAGACCATATCTGGGATATGGCATTGGCAGTATATGAAACATCCCATG
Found at i:34283120 original size:198 final size:198
Alignment explanation
Indices: 34282828--34283251 Score: 665
Period size: 198 Copynumber: 2.1 Consensus size: 198
34282818 GTTATGAGAG
* * *
34282828 TCCCACGTAAGACCATGTCTAGGACATGGCATTGGCATCGAGATAAGAGGTCCCCCATAAGACCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCGAGATAAGAGGTCCCCCATAAGACCA
*
34282893 TGTCTGGGACATGCCATTGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGGGATATGGC
66 TGTCTGGGACATGCCATTGGCACCGATATGAGAACTCCAATGTAAGACCATATCTGGGATATGGC
34282958 ATTGGCAGTATAGGAAACATCCCATGTAAGACCATATCTAGGATATGGCATTGGCAGTA-TAGGA
131 ATTGGCAGTATAGGAAACATCCCATGTAAGACCATATCTAGGATATGGCATTGGCAGTACT-GGA
34283022 AACA
195 AACA
* * * *
34283026 TCCCATGTAAGACCATGTCTGGGACATGGCGTTCGCA-CTGAGATGAGAGGTCCCCCGTAATACC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATC-GAGATAAGAGGTCCCCCATAAGACC
* *
34283090 ATGTCTGGGACGTGGCA-TGGACACCGATATGAGAACTCCAATGTAAGACCATATCTGGGATATG
65 ATGTCTGGGACATGCCATTGG-CACCGATATGAGAACTCCAATGTAAGACCATATCTGGGATATG
* *
34283154 GCATTGGCAGTATAGGAAACATCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTACTTG
129 GCATTGGCAGTATAGGAAACATCCCATGTAAGACCATATCTAGGATATGGCATTGGCAGTACTGG
34283219 AAACA
194 AAACA
* * *
34283224 ACTCATGTAAGATCATGTCTGGGACATG
1 TCCCATGTAAGACCATGTCTGGGACATG
34283252 ACTTTGGCAT
Statistics
Matches: 208, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
197 4 0.02
198 203 0.98
199 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (198 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTCGCATCGAGATAAGAGGTCCCCCATAAGACCA
TGTCTGGGACATGCCATTGGCACCGATATGAGAACTCCAATGTAAGACCATATCTGGGATATGGC
ATTGGCAGTATAGGAAACATCCCATGTAAGACCATATCTAGGATATGGCATTGGCAGTACTGGAA
ACA
Found at i:34283175 original size:149 final size:148
Alignment explanation
Indices: 34282885--34283207 Score: 427
Period size: 149 Copynumber: 2.2 Consensus size: 148
34282875 AGGTCCCCCA
* * * *
34282885 TAAGACCATGTCTGGGACATGCCATTGGCACCGATATGAGAACTCCCATGTAAGACCATATCTGG
1 TAAGACCATGTCTGGGACATGGCATTCGCACCGAGATGAGAACTCCCACGTAAGACCATATCTGG
* *
34282950 GATATGGCATTGGCAGTATAGGAAACATCCCATGTAAGACCATATCTAGGATATGGCATTGGCAG
66 GACATGGCATTGGCAGTATAGGAAACATCCAATGTAAGACCATATCTAGGATATGGCATTGGCAG
34283015 TATAGGAAACATCCCATG
131 TATAGGAAACATCCCATG
* * ** * * *
34283033 TAAGACCATGTCTGGGACATGGCGTTCGCACTGAGATGAGAGGTCCCCCGTAATACCATGTCTGG
1 TAAGACCATGTCTGGGACATGGCATTCGCACCGAGATGAGAACTCCCACGTAAGACCATATCTGG
* * *
34283098 GACGTGGCA-TGGACACCG-ATATGAGAAC-TCCAATGTAAGACCATATCTGGGATATGGCATTG
66 GACATGGCATTGG-CA--GTATAGGA-AACATCCAATGTAAGACCATATCTAGGATATGGCATTG
34283160 GCAGTATAGGAAACATCCCATG
127 GCAGTATAGGAAACATCCCATG
* *
34283182 TAAGACCATATCTGGGATATGGCATT
1 TAAGACCATGTCTGGGACATGGCATT
34283208 GGCAGTACTT
Statistics
Matches: 152, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
147 3 0.02
148 63 0.41
149 82 0.54
150 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (148 bp):
TAAGACCATGTCTGGGACATGGCATTCGCACCGAGATGAGAACTCCCACGTAAGACCATATCTGG
GACATGGCATTGGCAGTATAGGAAACATCCAATGTAAGACCATATCTAGGATATGGCATTGGCAG
TATAGGAAACATCCCATG
Found at i:34285613 original size:25 final size:26
Alignment explanation
Indices: 34285585--34285637 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
34285575 GTATATTTGT
*
34285585 TTCCATGTAACTAATTCATAT-ACCA
1 TTCCATATAACTAATTCATATAACCA
* * *
34285610 TTCCGTATATCTATTTCATATAACCA
1 TTCCATATAACTAATTCATATAACCA
34285636 TT
1 TT
34285638 TCATTTTACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.42
Consensus pattern (26 bp):
TTCCATATAACTAATTCATATAACCA
Found at i:34302776 original size:25 final size:25
Alignment explanation
Indices: 34302748--34302839 Score: 78
Period size: 25 Copynumber: 3.7 Consensus size: 25
34302738 TCTGACCCAC
34302748 AGCTCGTATGAGCATACCGATTTAT
1 AGCTCGTATGAGCATACCGATTTAT
* * * *
34302773 AGCTCGTAAGAGCAAACCGATCTAC
1 AGCTCGTATGAGCATACCGATTTAT
* ** * *
34302798 AACTCG-AGTGAGCATTTCAATTAAT
1 AGCTCGTA-TGAGCATACCGATTTAT
*
34302823 AGCTTGTATGAGCATAC
1 AGCTCGTATGAGCATAC
34302840 ATGTACATGA
Statistics
Matches: 48, Mismatches: 17, Indels: 4
0.70 0.25 0.06
Matches are distributed among these distances:
24 1 0.02
25 46 0.96
26 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (25 bp):
AGCTCGTATGAGCATACCGATTTAT
Found at i:34303068 original size:31 final size:31
Alignment explanation
Indices: 34302999--34303068 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
34302989 GAATTACATA
*
34302999 GAAAT-GTTGTTACATGGTATATGGAAACTT
1 GAAATGGTTGATACATGGTATATGGAAACTT
*
34303029 GAATTGGTTGATACAT-GTATAT-GAAACTT
1 GAAATGGTTGATACATGGTATATGGAAACTT
34303058 GATCAATGGTT
1 GA--AATGGTT
34303069 ATGTTCATCT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 9 0.26
30 10 0.29
31 15 0.44
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (31 bp):
GAAATGGTTGATACATGGTATATGGAAACTT
Found at i:34315779 original size:51 final size:50
Alignment explanation
Indices: 34315721--34315908 Score: 193
Period size: 51 Copynumber: 3.7 Consensus size: 50
34315711 TACCCGGTTC
* * *
34315721 ACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATAG
1 ACATAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCCGGTAG
* * *
34315772 ACATAGTAGCTTGCACATAGTACTACACACGTGATCGA-AGCTATCCGGTACG
1 ACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCCGGTA-G
* * * *
34315824 -CATAATAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTAC
1 ACATAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCCGGTAG
* * *
34315873 ACGTAGTAGCCTGCACATAGCACTACATACGTGACC
1 ACATAGTAGCCTGCACATAGTACTACACACGTGACC
34315909 TAGCAACTTC
Statistics
Matches: 112, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
49 1 0.01
50 40 0.36
51 68 0.61
52 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
ACATAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCCGGTAG
Found at i:34326476 original size:17 final size:17
Alignment explanation
Indices: 34326454--34326486 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
34326444 AGGTTATAAA
34326454 TAAGCATGCACCTTCCG
1 TAAGCATGCACCTTCCG
34326471 TAAGCATGCACCTTCC
1 TAAGCATGCACCTTCC
34326487 AATTATTGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.36, G:0.15, T:0.24
Consensus pattern (17 bp):
TAAGCATGCACCTTCCG
Found at i:34327108 original size:11 final size:11
Alignment explanation
Indices: 34327094--34327127 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
34327084 CATGGTTGGT
34327094 TGATTCATGCA
1 TGATTCATGCA
34327105 TGATTTCATGCA
1 TGA-TTCATGCA
*
34327117 TGAATCATGCA
1 TGATTCATGCA
34327128 AGGGGTTGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (11 bp):
TGATTCATGCA
Found at i:34337415 original size:44 final size:45
Alignment explanation
Indices: 34337254--34337806 Score: 198
Period size: 44 Copynumber: 12.7 Consensus size: 45
34337244 GTTTTAATCC
* * ** ** * *
34337254 GCTCCACTGCAACTTTAGGGAGATAGGA-TTATCGGCTTTAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCT
* *
34337298 GCTCCACTGCAACTTCAGTGAGATAAGATTTGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCT
* * *
34337343 GCTCCACTGCAACTTTAAGGAGATAAGACTTG-CTTACTT-AGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT-CTTCAGTCT
* * *
34337387 GCTACACTGCAACTTCAGGGAGATAAGACTAG--A--TGC-GATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAG-TCT
* * * * * *
34337428 ACT-CTCTGCAACTTCAGAGAGATAAGA--T-CCAAGGT-TTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCC-A--TCTTCAGTCT
* ** * * * * *
34337471 ACTCCACTGCAACTTCAGAAAGATAGGATTATCGGC-T-TTAACT-T
1 GCTCCACTGCAACTTCAGGGAGATAAGACT-T-GCCATCTTCAGTCT
* **
34337515 GCTCCACTGTAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCT
* * *
34337560 GC-CTCATTGCCACTTCA-GGAGAATAAGACTTG--A--TGC-GATCT
1 GCTC-CACTGCAACTTCAGGGAG-ATAAGACTTGCCATCTTCAG-TCT
* * * * * *
34337601 GCT-CTCTGCAAATTCAGAGAGATAAGA--T-CCAAGGT-TTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCC-A--TCTTCAGTCT
* * * ** ** * **
34337644 ACTCCACTGCAACTTCAGGAAGATAGGA-TTATCGGCTTTAACCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCT
* *
34337688 TCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCT
* * ** *
34337733 GC-CTCACTGCAACTTCA-AGAGGATAAGACTTTCTTTCTT-AGTTT
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCATCTTCAGTCT
* *
34337777 GCTACACTGCAAGTTCAGGGAGATAAGACT
1 GCTCCACTGCAACTTCAGGGAGATAAGACT
34337807 AGATGCGATC
Statistics
Matches: 378, Mismatches: 90, Indels: 82
0.69 0.16 0.15
Matches are distributed among these distances:
38 1 0.00
40 42 0.11
41 15 0.04
42 2 0.01
43 14 0.04
44 194 0.51
45 107 0.28
46 1 0.00
47 1 0.00
49 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (45 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCT
Found at i:34337486 original size:173 final size:171
Alignment explanation
Indices: 34337290--34337762 Score: 616
Period size: 173 Copynumber: 2.7 Consensus size: 171
34337280 GATTATCGGC
** * * *
34337290 TTTAATCTGCTCCACTGCAACTTCAGTGAGATAAGATT-T-GCCATCTTCAGTCTGCTCCACTGC
1 TTTAATCCACTCCACTGCAACTTCAG-GAGATAGGATTATCGGC-T-TT-AATCTGCTCCACTGC
* * * *
34337353 AACTTTAAGGAGATAAGACTTG-CTTACTT-AGTCTG-CTACACTGCAACTTCAGGGAGATAAGA
62 AACTTCAGGGAGATAAGATTTGCCAT-CTTCAGTCTGCCT-CACTGCAACTTCA-GGAGATAAGA
*
34337415 CTAGATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCCAAGGT
124 CTAGATGCGATCTACTCTCTGCAAATTCAGAGAGATAAGATCCAAGGT
* *
34337463 TTTAATCCACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAA-CTTGCTCCACTGTAA
1 TTTAATCCACTCCACTGCAACTTCAG-GAGATAGGATTATCGGCTTTAATC-TGCTCCACTGCAA
* * * *
34337527 CTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCATTGCCACTTCAGGAGAATAAGACTTG
64 CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAG-ATAAGACTAG
*
34337592 ATGCGATCTGCTCTCTGCAAATTCAGAGAGATAAGATCCAAGGT
128 ATGCGATCTACTCTCTGCAAATTCAGAGAGATAAGATCCAAGGT
* *
34337636 TTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAACCTTCTCCACTGCAAC
1 TTTAATCCACTCCACTGCAACTTCAGG-AGATAGGATTATCGGCTTTAATCTGCTCCACTGCAAC
*
34337701 TTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACT
65 TTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGA-GATAAGACT
34337763 TTCTTTCTTA
Statistics
Matches: 265, Mismatches: 25, Indels: 20
0.85 0.08 0.06
Matches are distributed among these distances:
171 1 0.00
172 36 0.14
173 220 0.83
174 6 0.02
175 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (171 bp):
TTTAATCCACTCCACTGCAACTTCAGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACT
TCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGATAAGACTAGATG
CGATCTACTCTCTGCAAATTCAGAGAGATAAGATCCAAGGT
Found at i:34337561 original size:217 final size:217
Alignment explanation
Indices: 34337180--34337591 Score: 632
Period size: 217 Copynumber: 1.9 Consensus size: 217
34337170 ACTCCTCTAT
* * * * *
34337180 AACTTTAGGGAGATGAGACTAGATGTGATCTGCTCTCTGTAAATTCAGAGAGATAAGATCCAAGG
1 AACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAAATTCAGAGAGATAAGATCCAAGG
* * **
34337245 TTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAA
66 TTTTAATCCACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAA
*
34337310 CTTCAGTGAGATAAGATTTGCCATCTTCAGTCTG-CTCCACTGCAACTTTAAGGAG-ATAAGACT
131 CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCT-CACTGCAAC-TTAAGGAGAATAAGACT
34337373 TGCTTACTTAGTCTGCTACACTGC
194 TGCTTACTTAGTCTGCTACACTGC
*
34337397 AACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCCAAGG
1 AACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAAATTCAGAGAGATAAGATCCAAGG
*
34337462 TTTTAATCCACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAA-CTTGCTCCACTGTA
66 TTTTAATCCACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAATC-TGCTCCACTGCA
* * * *
34337526 ACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCATTGCCACTTCAGGAGAATAAGACTT
130 ACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTAAGGAGAATAAGACTT
34337591 G
195 G
34337592 ATGCGATCTG
Statistics
Matches: 176, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
216 8 0.05
217 166 0.94
218 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (217 bp):
AACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAAATTCAGAGAGATAAGATCCAAGG
TTTTAATCCACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAA
CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTAAGGAGAATAAGACTTG
CTTACTTAGTCTGCTACACTGC
Found at i:34337656 original size:217 final size:217
Alignment explanation
Indices: 34337223--34337885 Score: 678
Period size: 217 Copynumber: 3.1 Consensus size: 217
34337213 TCTCTGTAAA
* *
34337223 TTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTATCG
1 TTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCG
* *
34337288 GCTTTAATCTGCTCCACTGCAACTTCAGTGAGATAAGATTTGCCATCTTCAGTCTGCTCCACTGC
66 GCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTGCTACACTGC
* * * * * *
34337353 AACTTTAAGGAG-ATAAGACTTGCTTACTTAGTCTGCTACACTGCAACTTCAGGGAGATAAGA--
131 AAC-TTCAGGAGAATAAGACTTG-ATGC-GA-TCTGCT-CTCTGCAACTTCAGAGAGATAAGATC
* * *** * *
34337415 CTA-GATGCGATCTACT-CTCTGCAAC
191 CAAGGTTTTAATCCACTCCACTGCAAC
**
34337440 TTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGAAAGATAGGATTATCG
1 TTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCG
* * * *
34337505 GCTTTAA-CTTGCTCCACTGTAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCT-CATT
66 GCTTTAATC-TGCTCCACTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTG-CTACACT
* *
34337568 GCCACTTCAGGAGAATAAGACTTGATGCGATCTGCTCTCTGCAAATTCAGAGAGATAAGATCCAA
129 GCAACTTCAGGAGAATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAA
34337633 GGTTTTAATCCACTCCACTGCAAC
194 GGTTTTAATCCACTCCACTGCAAC
* * * * * *
34337657 TTCAG-GAAGATAGGAT-TATCGGCTTTAA-CCTTCTCCACTGCAACTTCAGGGAGATAAGATT-
1 TTCAGAG-AGATAAGATCCA-AGGTTTTAATCC-ACTCCACTGCAACTTCAGGGAGATAGGATTA
* * ** *
34337718 T-GCCATCTTCAGTCTGC-CTCACTGCAACTTCA-AGAGGATAAGACTTT-CTTTCTT-AGTTTG
63 TCGGC-T-TT-AATCTGCTC-CACTGCAACTTCAGAGA-GATAAGA-TTTGCCATCTTCAGTCTG
* * *
34337778 CTACACTGCAAGTTCAGG-GAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATA
122 CTACACTGCAACTTCAGGAGA-ATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA
*
34337842 AGATCCAAGGTTTTAATCCACCCCACTGCAAC
186 AGATCCAAGGTTTTAATCCACTCCACTGCAAC
34337874 TTCA-AGGAGATA
1 TTCAGA-GAGATA
34337886 GGATTACTGG
Statistics
Matches: 379, Mismatches: 46, Indels: 42
0.81 0.10 0.09
Matches are distributed among these distances:
213 21 0.06
214 6 0.02
215 5 0.01
216 28 0.07
217 285 0.75
218 30 0.08
219 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (217 bp):
TTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATCG
GCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTGCTACACTGC
AACTTCAGGAGAATAAGACTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGG
TTTTAATCCACTCCACTGCAAC
Found at i:34337763 original size:173 final size:173
Alignment explanation
Indices: 34337342--34337763 Score: 638
Period size: 173 Copynumber: 2.4 Consensus size: 173
34337332 ATCTTCAGTC
* * * *
34337342 TGCTCCACTGCAACTTTAAGGAGATAAGACTTG-CTTACTT-AGTCTG-CTACACTGCAACTTC-
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT-CTTCAGTCTGCCT-CACTGCAACTTCA
* * *
34337403 AGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
64 AGAG-GATAAGACTTGATGCGATCTACTCTCTGCAAATTCAGAGAGATAAGATCCAAGGTTTTAA
34337468 TCCACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAACT
128 TCCACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAACT
* * * * *
34337514 TGCTCCACTGTAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCATTGCCACTTCAGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAG
* *
34337579 AGAATAAGACTTGATGCGATCTGCTCTCTGCAAATTCAGAGAGATAAGATCCAAGGTTTTAATCC
66 AGGATAAGACTTGATGCGATCTACTCTCTGCAAATTCAGAGAGATAAGATCCAAGGTTTTAATCC
*
34337644 ACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAACCT
131 ACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAA-CT
34337688 T-CTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAG
34337752 AGGATAAGACTT
66 AGGATAAGACTT
34337764 TCTTTCTTAG
Statistics
Matches: 224, Mismatches: 21, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
172 31 0.14
173 186 0.83
174 7 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (173 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAG
AGGATAAGACTTGATGCGATCTACTCTCTGCAAATTCAGAGAGATAAGATCCAAGGTTTTAATCC
ACTCCACTGCAACTTCAGAAAGATAGGATTATCGGCTTTAACT
Found at i:34344655 original size:22 final size:22
Alignment explanation
Indices: 34344629--34344680 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
34344619 ATAAACTCTT
*
34344629 AACCCTTAACCCTTAACTCC-TA
1 AACCCTTAACCCATAA-TCCATA
* *
34344651 AACCCATAATCCATAATCCATA
1 AACCCTTAACCCATAATCCATA
34344673 AA-CCTTAA
1 AACCCTTAA
34344681 GATAGTAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.25
Consensus pattern (22 bp):
AACCCTTAACCCATAATCCATA
Found at i:34344805 original size:20 final size:21
Alignment explanation
Indices: 34344777--34344825 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
34344767 AAAACACTAG
*
34344777 TTAATCTAAACCCT-AAACCA
1 TTAACCTAAACCCTAAAACCA
34344797 TTAACCTAAACCCTAAAACCA
1 TTAACCTAAACCCTAAAACCA
*
34344818 TAAACCTA
1 TTAACCTA
34344826 TAAACCCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (21 bp):
TTAACCTAAACCCTAAAACCA
Found at i:34344881 original size:7 final size:7
Alignment explanation
Indices: 34344869--34344980 Score: 75
Period size: 7 Copynumber: 15.7 Consensus size: 7
34344859 CCCTAGCCTT
34344869 TAAACCA
1 TAAACCA
34344876 TAAACCA
1 TAAACCA
*
34344883 TAAATCA
1 TAAACCA
*
34344890 TAACCCA
1 TAAACCA
34344897 TAAACCCA
1 TAAA-CCA
*
34344905 TAATCCA
1 TAAACCA
*
34344912 TAAACCT
1 TAAACCA
***
34344919 TAAAATGG
1 T-AAACCA
34344927 TAACACC-
1 TAA-ACCA
*
34344934 TAAACCT
1 TAAACCA
34344941 TAAACTC-
1 TAAAC-CA
34344948 TAAACCA
1 TAAACCA
* *
34344955 TATACCC
1 TAAACCA
34344962 TAAACCA
1 TAAACCA
*
34344969 AAAACCA
1 TAAACCA
34344976 TAAAC
1 TAAAC
34344981 TATAGTGATA
Statistics
Matches: 81, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
6 4 0.05
7 65 0.80
8 12 0.15
ACGTcount: A:0.50, C:0.29, G:0.02, T:0.20
Consensus pattern (7 bp):
TAAACCA
Found at i:34345447 original size:41 final size:41
Alignment explanation
Indices: 34345320--34345483 Score: 170
Period size: 41 Copynumber: 4.0 Consensus size: 41
34345310 CGCTTAAAAT
* * *
34345320 AGAGCATTCGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCC
1 AGAGCATTAGCGGCACTTTTTCAAAAACGCCACTAAAG-CCC
* * * * ***
34345362 A-ATGCATCAACGGCACTTATTAAAAAACGCCACTAAA-AAT
1 AGA-GCATTAGCGGCACTTTTTCAAAAACGCCACTAAAGCCC
*
34345402 AGAGCATTAGCAGCACTTTTTCAAAAACGCCACTAAAGCCC
1 AGAGCATTAGCGGCACTTTTTCAAAAACGCCACTAAAGCCC
* * *
34345443 AGAGCATTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGCCC
1 AGAGCATTAGCGGCACTTTTTCAAAAACGCCACTAAAGCCC
34345484 TGAAAAGCTC
Statistics
Matches: 97, Mismatches: 22, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
40 30 0.31
41 39 0.40
42 28 0.29
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (41 bp):
AGAGCATTAGCGGCACTTTTTCAAAAACGCCACTAAAGCCC
Found at i:34351496 original size:19 final size:19
Alignment explanation
Indices: 34351437--34351497 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
34351427 ACTTATAAAA
*
34351437 TTATATCGATACCTATTTT
1 TTATATCGATACCAATTTT
* * **
34351456 TTTTATCAATACCCAA-AAT
1 TTATATCGATA-CCAATTTT
34351475 TTATATCGATACCAATTTT
1 TTATATCGATACCAATTTT
34351494 TTAT
1 TTAT
34351498 TTTGTTTTTC
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
18 4 0.13
19 24 0.77
20 3 0.10
ACGTcount: A:0.33, C:0.16, G:0.03, T:0.48
Consensus pattern (19 bp):
TTATATCGATACCAATTTT
Found at i:34354287 original size:24 final size:22
Alignment explanation
Indices: 34354266--34354310 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
34354256 TATAATAATT
34354266 TACTTTGTCTCTAATAAGATAA
1 TACTTTGTCTCTAATAAGATAA
* *
34354288 TACTTTGTGTCTAGTAAGA-AA
1 TACTTTGTCTCTAATAAGATAA
34354309 TA
1 TA
34354311 TAAATATGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (22 bp):
TACTTTGTCTCTAATAAGATAA
Found at i:34358466 original size:27 final size:27
Alignment explanation
Indices: 34358427--34358734 Score: 332
Period size: 27 Copynumber: 11.4 Consensus size: 27
34358417 TCCCAAAATA
* * *
34358427 GGTAAAATGACCAAAATACCCCCATAT
1 GGTAGAATGACCGAAATACCCCCATAG
* *
34358454 GGTAGAATAACC-ACAATACCCTCATAG
1 GGTAGAATGACCGA-AATACCCCCATAG
*
34358481 GGTAGAATGACCGAAATACCCCCACAG
1 GGTAGAATGACCGAAATACCCCCATAG
* * * *
34358508 GGTAAAATGACTGAAAAACCCTCATAG
1 GGTAGAATGACCGAAATACCCCCATAG
* *
34358535 AGTAGAATGACCGAAATACCCTCATAG
1 GGTAGAATGACCGAAATACCCCCATAG
*
34358562 GGTAGAATGATCGAAATACCCCCATAG
1 GGTAGAATGACCGAAATACCCCCATAG
* *
34358589 GGTAAAATGACCGAAATA-CCCTATAG
1 GGTAGAATGACCGAAATACCCCCATAG
* *
34358615 GGTAGAATGATCGAAATACCCCCGTAG
1 GGTAGAATGACCGAAATACCCCCATAG
* * * *
34358642 GGTAAAATAATCGAAATACCCCTATAG
1 GGTAGAATGACCGAAATACCCCCATAG
* *
34358669 GGTAGAATGACTGAAATACCTCCATAG
1 GGTAGAATGACCGAAATACCCCCATAG
* * * *
34358696 GGTAAAATCACTGGAATACCCTCCATAG
1 GGTAGAATGACCGAAATACCC-CCATAG
*
34358724 GGTAAAATGAC
1 GGTAGAATGAC
34358735 TGTTATACCC
Statistics
Matches: 236, Mismatches: 41, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
26 24 0.10
27 195 0.83
28 17 0.07
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (27 bp):
GGTAGAATGACCGAAATACCCCCATAG
Found at i:34361152 original size:27 final size:27
Alignment explanation
Indices: 34361125--34361532 Score: 462
Period size: 27 Copynumber: 15.2 Consensus size: 27
34361115 AAATAAGTAA
* *
34361125 AATGACCAAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAG
* * *
34361152 AATGATCGAAGTACCCCCATAGGGTAT
1 AATGACCGAAATACCCCCATAGGGTAG
*
34361179 AATGACCGAAATACCCCCATAGAGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
** *
34361206 AATGACAAAAATACCCCCATAAGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
*
34361233 AATGACCGAAATACCCCCATAAGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* * *
34361260 AATGACC-AAAAACCCGCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAG
*
34361286 AATAACCGAAATA-CCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
**
34361312 AATGACTAAAATA-CCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
** ** * *
34361338 AATGATTGAAATACCTTCATAGGATAA
1 AATGACCGAAATACCCCCATAGGGTAG
34361365 AATGACCGAAATACCCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* *
34361392 AATGACTGACATACCCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* * *
34361419 AATGACCAAAATACCCTCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAG
* * * * *
34361446 AATGACTGAAAGATCCTCATAAGGTAG
1 AATGACCGAAATACCCCCATAGGGTAG
* *
34361473 AATGACTGAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAG
* * *
34361500 AATGATCGAAATACACCCATAGGGTAA
1 AATGACCGAAATACCCCCATAGGGTAG
34361527 AATGAC
1 AATGAC
34361533 TGTTATACCC
Statistics
Matches: 320, Mismatches: 59, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 66 0.21
27 254 0.79
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.18
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAGGGTAG
Found at i:34362727 original size:6 final size:6
Alignment explanation
Indices: 34362716--34362806 Score: 69
Period size: 6 Copynumber: 15.5 Consensus size: 6
34362706 GATATATAAA
* * * *
34362716 TTTTAT TTTTAT CTTTA- TTTTAA ATTTAT TTTTA- TTTTAT TTTCAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * * * * * *
34362762 CTTTAT CTTTAA TTTTAA TTTTAA TTTTAA TTTTAT TCTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
34362807 ATTAGGGTGT
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
5 9 0.13
6 61 0.87
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAT
Found at i:34362737 original size:17 final size:16
Alignment explanation
Indices: 34362715--34362809 Score: 82
Period size: 17 Copynumber: 5.5 Consensus size: 16
34362705 AGATATATAA
34362715 ATTTTATTTTTATCTTT
1 ATTTTATTTTTAT-TTT
**
34362732 ATTTTAAATTTATTTTT
1 ATTTTATTTTTA-TTTT
*
34362749 ATTTTATTTTCATCTTT
1 ATTTTATTTTTAT-TTT
*
34362766 ATCTTTAATTTTAATTTT
1 AT-TTT-ATTTTTATTTT
*
34362784 AATTTTAATTTTATTCTT
1 -ATTTTATTTTTATT-TT
34362802 ATTTTATT
1 ATTTTATT
34362810 AGGGTGTAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
16 1 0.02
17 41 0.65
18 12 0.19
19 9 0.14
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTATTTTTATTTT
Found at i:34362743 original size:11 final size:11
Alignment explanation
Indices: 34362714--34362807 Score: 91
Period size: 12 Copynumber: 8.1 Consensus size: 11
34362704 CAGATATATA
34362714 AATTTTATTTT
1 AATTTTATTTT
*
34362725 TATCTTTATTTT
1 AAT-TTTATTTT
*
34362737 AAATTTATTTT
1 AATTTTATTTT
*
34362748 TATTTTATTTT
1 AATTTTATTTT
*
34362759 CATCTTTATCTTT
1 AAT-TTTAT-TTT
34362772 AATTTTAATTTT
1 AATTTT-ATTTT
34362784 AATTTTAATTTT
1 AATTTT-ATTTT
34362796 -ATTCTTATTTT
1 AATT-TTATTTT
34362807 A
1 A
34362808 TTAGGGTGTA
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
11 29 0.41
12 34 0.49
13 7 0.10
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (11 bp):
AATTTTATTTT
Found at i:34365013 original size:52 final size:52
Alignment explanation
Indices: 34364935--34365045 Score: 204
Period size: 52 Copynumber: 2.1 Consensus size: 52
34364925 TAGATTCATC
*
34364935 GTAATTGTTTTATATTCCTTAGAAATTAATCATGCATGATGGTTTAATCTCT
1 GTAATTGTTTTATATTCCTTAGAAATTAAGCATGCATGATGGTTTAATCTCT
34364987 GTAATTGTTTTATATTCCTTAGAAATTAAGCATGCATGATGGTTTAATCTCT
1 GTAATTGTTTTATATTCCTTAGAAATTAAGCATGCATGATGGTTTAATCTCT
*
34365039 ATAATTG
1 GTAATTG
34365046 GTTTGGTACT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (52 bp):
GTAATTGTTTTATATTCCTTAGAAATTAAGCATGCATGATGGTTTAATCTCT
Found at i:34377906 original size:26 final size:26
Alignment explanation
Indices: 34377868--34377935 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
34377858 TTTATATCAT
* *
34377868 TGCTCACATGAGCTGTGAAATGGGTC
1 TGCTCACACGAGCTGTGAAATGGGCC
*
34377894 TGCTCATACGAGCTGTGAAATGGGCC
1 TGCTCACACGAGCTGTGAAATGGGCC
34377920 TGCTCACACGAGCTGT
1 TGCTCACACGAGCTGT
34377936 AGGTCGGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (26 bp):
TGCTCACACGAGCTGTGAAATGGGCC
Found at i:34380549 original size:26 final size:26
Alignment explanation
Indices: 34380512--34380574 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
34380502 ACATATTTTC
* *
34380512 TCAAAATCTTACT-AGTGGAAAAATCT
1 TCAAAATTTTACTAAG-GGAAAAATCA
*
34380538 TCAAAATTTTACTAAGGGTAAAATCA
1 TCAAAATTTTACTAAGGGAAAAATCA
*
34380564 TCCAAATTTTA
1 TCAAAATTTTA
34380575 TTGGGGGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 30 0.94
27 2 0.06
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACTAAGGGAAAAATCA
Found at i:34382019 original size:14 final size:14
Alignment explanation
Indices: 34381997--34382035 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
34381987 ATGTTTTTAC
34381997 ACTTGTCTTAACTT
1 ACTTGTCTTAACTT
* *
34382011 ACTTATCTTATCTT
1 ACTTGTCTTAACTT
34382025 ATCTTGTCTTA
1 A-CTTGTCTTA
34382036 TTTTGTTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.54
Consensus pattern (14 bp):
ACTTGTCTTAACTT
Found at i:34387278 original size:24 final size:24
Alignment explanation
Indices: 34387246--34387292 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
34387236 CTAAATTTAT
*
34387246 AACACTTTCCTTTC-CTTTCTCTTC
1 AACACTTTCC-ATCACTTTCTCTTC
*
34387270 AACATTTTCCATCACTTTCTCTT
1 AACACTTTCCATCACTTTCTCTT
34387293 ATTTCCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.49
Consensus pattern (24 bp):
AACACTTTCCATCACTTTCTCTTC
Found at i:34412960 original size:22 final size:22
Alignment explanation
Indices: 34412924--34412968 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
34412914 TTGATATTCT
34412924 AGTTGGAATTGTAATGTGTCTAA
1 AGTTGGAATTGTAATGTGT-TAA
*
34412947 AGTTGGTA-TGTAATGTGTTAA
1 AGTTGGAATTGTAATGTGTTAA
34412968 A
1 A
34412969 CTTAATGTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 10 0.48
23 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.27, T:0.40
Consensus pattern (22 bp):
AGTTGGAATTGTAATGTGTTAA
Found at i:34417528 original size:27 final size:27
Alignment explanation
Indices: 34417497--34417585 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
34417487 GGGCATTCCA
*
34417497 TTTCATTTCATGATTTTCCACAAAGGC
1 TTTCATTTCATGATTATCCACAAAGGC
** *
34417524 TTTCATTTCATGATTCGCCCCAAAGGC
1 TTTCATTTCATGATTATCCACAAAGGC
*
34417551 TTTCATTTCATTATTCAT-CACAAAGGC
1 TTTCATTTCATGATT-ATCCACAAAGGC
*
34417578 TTCCATTT
1 TTTCATTT
34417586 TATTTCATTT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (27 bp):
TTTCATTTCATGATTATCCACAAAGGC
Found at i:34427562 original size:13 final size:13
Alignment explanation
Indices: 34427544--34427587 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
34427534 AAGATTATTT
34427544 ATTTAATGAATTA
1 ATTTAATGAATTA
*
34427557 ATTTAATTAATTA
1 ATTTAATGAATTA
34427570 GA-TTAACTGAATTA
1 -ATTTAA-TGAATTA
34427584 ATTT
1 ATTT
34427588 CTCAGTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (13 bp):
ATTTAATGAATTA
Found at i:34429685 original size:40 final size:40
Alignment explanation
Indices: 34429641--34429942 Score: 388
Period size: 40 Copynumber: 7.5 Consensus size: 40
34429631 AATTATTAAA
* * * *
34429641 TGATTGCACTTACATGTCCATGTTTGTACTTCGATACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
*
34429681 TGATTGCACTTACGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * ** *
34429721 TGATTGTACTTACGTGGCCCTGTTTGTACTTTAGTACCCT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
34429761 TGATTGCACTTATGTGCCTCTTTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
34429801 TGATTGCACTTACGTGCCCCTATTTGTACTTCGGTGCCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
34429841 TGATTGCACTTATGTGCCCCTGTTTATACTTCGGTACTCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* *
34429881 TAATTGCACTTACGTGCCCCTTTTTGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
34429921 TGGTTGAACTTCCGTGCCCCTG
1 TGATTGCACTTACGTGCCCCTG
34429943 GTTATACTCT
Statistics
Matches: 226, Mismatches: 36, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 226 1.00
ACGTcount: A:0.14, C:0.28, G:0.19, T:0.39
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:34429945 original size:20 final size:20
Alignment explanation
Indices: 34429677--34429942 Score: 120
Period size: 20 Copynumber: 13.3 Consensus size: 20
34429667 TACTTCGATA
*
34429677 CCCCTGATTGCACTTACGTG
1 CCCCTGATTGCACTTCCGTG
* * ** *
34429697 CCCCTGTTTGTACTTTGGTA
1 CCCCTGATTGCACTTCCGTG
* *
34429717 CCCCTGATTGTACTTACGTG
1 CCCCTGATTGCACTTCCGTG
* * * ** *
34429737 GCCCTGTTTGTACTTTAGTA
1 CCCCTGATTGCACTTCCGTG
* **
34429757 CCCTTGATTGCACTTATGTG
1 CCCCTGATTGCACTTCCGTG
* ** * ** *
34429777 CCTCTTTTTGTACTTTGGTA
1 CCCCTGATTGCACTTCCGTG
*
34429797 CCCCTGATTGCACTTACGTG
1 CCCCTGATTGCACTTCCGTG
* *
34429817 CCCCT-ATTTGTACTTCGGTG
1 CCCCTGA-TTGCACTTCCGTG
**
34429837 CCCCTGATTGCACTTATGTG
1 CCCCTGATTGCACTTCCGTG
* ** * *
34429857 CCCCTGTTTATACTTCGGTA
1 CCCCTGATTGCACTTCCGTG
* * *
34429877 CTCCTAATTGCACTTACGTG
1 CCCCTGATTGCACTTCCGTG
** * * *
34429897 CCCCTTTTTGTACTTCGGTA
1 CCCCTGATTGCACTTCCGTG
* *
34429917 CCCCTGGTTGAACTTCCGTG
1 CCCCTGATTGCACTTCCGTG
34429937 CCCCTG
1 CCCCTG
34429943 GTTATACTCT
Statistics
Matches: 176, Mismatches: 68, Indels: 4
0.71 0.27 0.02
Matches are distributed among these distances:
19 1 0.01
20 174 0.99
21 1 0.01
ACGTcount: A:0.13, C:0.30, G:0.19, T:0.38
Consensus pattern (20 bp):
CCCCTGATTGCACTTCCGTG
Found at i:34432749 original size:13 final size:13
Alignment explanation
Indices: 34432728--34432761 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
34432718 AATTCGTCTG
34432728 TTTATTTTTCTTTA
1 TTTATTTTTC-TTA
34432742 TTTATTTTTCTTA
1 TTTATTTTTCTTA
34432755 TTTATTT
1 TTTATTT
34432762 ATTTATAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTTTTCTTA
Found at i:34442634 original size:54 final size:54
Alignment explanation
Indices: 34442551--34442686 Score: 150
Period size: 54 Copynumber: 2.5 Consensus size: 54
34442541 CAACCAATGG
* * *
34442551 AGTCCATCAGGACACTAAACACGGAGTAGTTTG-CTGGGATAA-TAAACATGGGGT
1 AGTCCACCAGGACACTAAACACGGAGTAG-TCGACTGGGA-AACTAAACACGGGGT
* *
34442605 AGTCCACCGGGACACTAAACACGGGGTAGTCGACTGGGAAACTAAACACGGGGT
1 AGTCCACCAGGACACTAAACACGGAGTAGTCGACTGGGAAACTAAACACGGGGT
*** * *
34442659 AGTCCGTTAGGACACTAAGCACAGAGTA
1 AGTCCACCAGGACACTAAACACGGAGTA
34442687 CTCTGTTAGA
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
53 4 0.06
54 64 0.94
ACGTcount: A:0.33, C:0.21, G:0.29, T:0.18
Consensus pattern (54 bp):
AGTCCACCAGGACACTAAACACGGAGTAGTCGACTGGGAAACTAAACACGGGGT
Found at i:34442675 original size:27 final size:27
Alignment explanation
Indices: 34442559--34442771 Score: 117
Period size: 27 Copynumber: 7.9 Consensus size: 27
34442549 GGAGTCCATC
* **
34442559 AGGACACTAAACACGGAGTAGTTTGCT
1 AGGACACTAAACACGGGGTAGTCCGCT
* * * * * *
34442586 GGGATAATAAACATGGGGTAGTCCACC
1 AGGACACTAAACACGGGGTAGTCCGCT
*
34442613 GGGACACTAAACACGGGGTAGT-CGACT
1 AGGACACTAAACACGGGGTAGTCCG-CT
* * *
34442640 GGGAAACTAAACACGGGGTAGTCCGTT
1 AGGACACTAAACACGGGGTAGTCCGCT
* * * * * *
34442667 AGGACACTAAGCACAGAGTACTCTGTT
1 AGGACACTAAACACGGGGTAGTCCGCT
* **
34442694 A-GACTACTAAATACGACGTAGTCCG-T
1 AGGAC-ACTAAACACGGGGTAGTCCGCT
* * **
34442720 CGGTACACTAAATATAGGGTAGTCCGCT
1 AGG-ACACTAAACACGGGGTAGTCCGCT
* * *
34442748 ATGACATTAAACATGGGGTAGTCC
1 AGGACACTAAACACGGGGTAGTCC
34442772 ACCGAAACTA
Statistics
Matches: 140, Mismatches: 40, Indels: 12
0.73 0.21 0.06
Matches are distributed among these distances:
26 5 0.04
27 129 0.92
28 6 0.04
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (27 bp):
AGGACACTAAACACGGGGTAGTCCGCT
Found at i:34448621 original size:13 final size:13
Alignment explanation
Indices: 34448599--34448641 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
34448589 TGAATAATAG
34448599 AAAT-TAAATAAC
1 AAATATAAATAAC
*
34448611 TAATATAAATAAC
1 AAATATAAATAAC
34448624 AAATA-AAATAAAC
1 AAATATAAAT-AAC
34448637 AAATA
1 AAATA
34448642 ACTAAACCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
12 7 0.26
13 20 0.74
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (13 bp):
AAATATAAATAAC
Found at i:34450284 original size:23 final size:23
Alignment explanation
Indices: 34450253--34450304 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
34450243 CTTCATGATG
* *
34450253 TATTTTGTAAAGCCTGT-GTGGCA
1 TATTCTGTAAAGCCT-TCGTAGCA
34450276 TATTCTGTAAAGCCTTCGTAGCA
1 TATTCTGTAAAGCCTTCGTAGCA
34450299 TATTCT
1 TATTCT
34450305 TTAATACCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 25 0.96
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (23 bp):
TATTCTGTAAAGCCTTCGTAGCA
Found at i:34458417 original size:20 final size:20
Alignment explanation
Indices: 34458381--34458419 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34458371 GTAGGTACAT
**
34458381 ATATTTTTATACGAGTATCG
1 ATATTTTTATAAAAGTATCG
34458401 ATATTTTTATAAAAGTATC
1 ATATTTTTATAAAAGTATC
34458420 AATAATTTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (20 bp):
ATATTTTTATAAAAGTATCG
Found at i:34465180 original size:22 final size:22
Alignment explanation
Indices: 34465155--34465228 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
34465145 TCTTTATGAT
34465155 ATTCTGTTAGCCTTTGTGGTGC
1 ATTCTGTTAGCCTTTGTGGTGC
* * *
34465177 ATTCTGATTTGGTCGTTGT-G-GC
1 ATTCTG--TTAGCCTTTGTGGTGC
* * *
34465199 AATCTGTTAGCCTTTTTGGTGT
1 ATTCTGTTAGCCTTTGTGGTGC
34465221 ATTCTGTT
1 ATTCTGTT
34465229 TGACCATTGT
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
20 7 0.18
21 1 0.03
22 21 0.55
23 1 0.03
24 8 0.21
ACGTcount: A:0.11, C:0.15, G:0.26, T:0.49
Consensus pattern (22 bp):
ATTCTGTTAGCCTTTGTGGTGC
Found at i:34465226 original size:44 final size:44
Alignment explanation
Indices: 34465104--34465230 Score: 141
Period size: 44 Copynumber: 2.9 Consensus size: 44
34465094 GATTCAACCT
* ** * *
34465104 TTGTGGAAATCTTTTAGCCTTTGTGGCATATTCTAATTTGGTCT
1 TTGTGGAAATCTGTTAGCCTTTGTGGTGTATTCTGATTTGGTCG
* * *
34465148 TTAT-GATATTCTGTTAGCCTTTGTGGTGCATTCTGATTTGGTCG
1 TTGTGGA-AATCTGTTAGCCTTTGTGGTGTATTCTGATTTGGTCG
* *
34465192 TTGTGGCAATCTGTTAGCCTTTTTGGTGTATTCTG-TTTG
1 TTGTGGAAATCTGTTAGCCTTTGTGGTGTATTCTGATTTG
34465231 ACCATTGTGG
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
43 6 0.09
44 61 0.90
45 1 0.01
ACGTcount: A:0.14, C:0.13, G:0.24, T:0.49
Consensus pattern (44 bp):
TTGTGGAAATCTGTTAGCCTTTGTGGTGTATTCTGATTTGGTCG
Found at i:34471166 original size:29 final size:29
Alignment explanation
Indices: 34471127--34471199 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
34471117 TACACAATAC
*
34471127 AAAGGCTTTCTTTTCCA-GAGATTTTCCAT
1 AAAGGCATTCTTTTCCAGGA-ATTTTCCAT
*
34471156 AAAGGCATTCTTTTCTAGGAATTTTCCAT
1 AAAGGCATTCTTTTCCAGGAATTTTCCAT
*
34471185 AAAGGCATTTTTTTC
1 AAAGGCATTCTTTTC
34471200 ATTTAGTACT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 38 0.95
30 2 0.05
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (29 bp):
AAAGGCATTCTTTTCCAGGAATTTTCCAT
Found at i:34471340 original size:59 final size:61
Alignment explanation
Indices: 34471270--34471384 Score: 157
Period size: 59 Copynumber: 1.9 Consensus size: 61
34471260 CAAAGATTTG
* * *
34471270 CCACAAAGGCTTTCCTTAT-CATATA-TTGCTACAAAGGCATT-C-TTTTCATTCGTTACTTA
1 CCACAAAGGCTTTCCTT-TCCATAGATTTGCCACAAAGGC-TTCCATTTTCATACGTTACTTA
34471329 CCACAAAGGCTTTCCTTTCCATAGATTTGCCACAAAGGCTTCCATTTTCATACGTT
1 CCACAAAGGCTTTCCTTTCCATAGATTTGCCACAAAGGCTTCCATTTTCATACGTT
34471385 TTCATGATAT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
58 1 0.02
59 24 0.49
60 13 0.27
61 11 0.22
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (61 bp):
CCACAAAGGCTTTCCTTTCCATAGATTTGCCACAAAGGCTTCCATTTTCATACGTTACTTA
Found at i:34471365 original size:29 final size:29
Alignment explanation
Indices: 34471222--34471369 Score: 140
Period size: 29 Copynumber: 5.1 Consensus size: 29
34471212 CTGCAAAAGA
* * *
34471222 TTTCCTTTCCAAATATTTGCCGCAAAGGC
1 TTTCCTTTCCATAGATTTGCCACAAAGGC
*
34471251 TTTCCTTTCCAAAGATTTGCCACAAAGGC
1 TTTCCTTTCCATAGATTTGCCACAAAGGC
* *
34471280 TTTCCTTAT-CATATA-TTGCTACAAAGGC
1 TTTCCTT-TCCATAGATTTGCCACAAAGGC
* * * * *
34471308 ATT-CTTTTCATTCGTTACTTACCACAAAGGC
1 TTTCCTTTCCA-TAG--ATTTGCCACAAAGGC
34471339 TTTCCTTTCCATAGATTTGCCACAAAGGC
1 TTTCCTTTCCATAGATTTGCCACAAAGGC
34471368 TT
1 TT
34471370 CCATTTTCAT
Statistics
Matches: 97, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
26 1 0.01
27 5 0.05
28 15 0.15
29 53 0.55
30 2 0.02
31 15 0.15
32 6 0.06
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (29 bp):
TTTCCTTTCCATAGATTTGCCACAAAGGC
Found at i:34471545 original size:50 final size:50
Alignment explanation
Indices: 34471491--34471585 Score: 118
Period size: 50 Copynumber: 1.9 Consensus size: 50
34471481 TAGATATTTT
* * * * *
34471491 CATATGATGTCATAACCCACCAGCTATGATCTTATACGATATGGTGTTCC
1 CATATGACGCCATAACCCACCAACTACGATCTTACACGATATGGTGTTCC
* * *
34471541 CATATGACGCCATAGCCCACCAATTACGGTCTTACACGATATGGT
1 CATATGACGCCATAACCCACCAACTACGATCTTACACGATATGGT
34471586 CCTTTCATTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 37 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (50 bp):
CATATGACGCCATAACCCACCAACTACGATCTTACACGATATGGTGTTCC
Found at i:34476808 original size:13 final size:13
Alignment explanation
Indices: 34476790--34476817 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34476780 GAAACTTGAA
34476790 TAAATAGGTCATT
1 TAAATAGGTCATT
34476803 TAAATAGGTCATT
1 TAAATAGGTCATT
34476816 TA
1 TA
34476818 GAGTTGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (13 bp):
TAAATAGGTCATT
Found at i:34487929 original size:12 final size:13
Alignment explanation
Indices: 34487912--34487970 Score: 59
Period size: 13 Copynumber: 4.5 Consensus size: 13
34487902 CTTCTCTATC
34487912 CATATAAAC-ATT
1 CATATAAACAATT
*
34487924 CATATACACAATT
1 CATATAAACAATT
*
34487937 CATAT-AACTATTT
1 CATATAAAC-AATT
*
34487950 CCATATAACCAATT
1 -CATATAAACAATT
34487964 CATATAA
1 CATATAA
34487971 TCATTATGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
12 10 0.26
13 18 0.47
14 8 0.21
15 2 0.05
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (13 bp):
CATATAAACAATT
Found at i:34488010 original size:13 final size:13
Alignment explanation
Indices: 34487921--34488010 Score: 69
Period size: 13 Copynumber: 6.8 Consensus size: 13
34487911 CCATATAAAC
34487921 ATTCATATACAC-A
1 ATTCATATA-ACTA
34487934 ATTCATATAACTA
1 ATTCATATAACTA
* *
34487947 TTTCCATATAACCA
1 ATT-CATATAACTA
*
34487961 ATTCATATAA-TC
1 ATTCATATAACTA
*
34487973 ATT-ATGTATATCTA
1 ATTCA--TATAACTA
*
34487987 TTTCTATATAACTA
1 ATTC-ATATAACTA
34488001 ATTCATATAA
1 ATTCATATAA
34488011 TCATTTTATA
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
11 1 0.02
12 5 0.08
13 29 0.48
14 24 0.40
16 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.01, T:0.41
Consensus pattern (13 bp):
ATTCATATAACTA
Found at i:34488023 original size:40 final size:40
Alignment explanation
Indices: 34487910--34488023 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
34487900 TACTTCTCTA
* * * *
34487910 TCCATATAAAC-ATTCATATACA-CAATTCATATAACTATT
1 TCCATATAACCAATTCATATA-ATCATTTTATATATCTATT
* *
34487949 TCCATATAACCAATTCATATAATCATTATGTATATCTATT
1 TCCATATAACCAATTCATATAATCATTTTATATATCTATT
* *
34487989 TCTATATAACTAATTCATATAATCATTTTATATAT
1 TCCATATAACCAATTCATATAATCATTTTATATAT
34488024 TCATTTTCCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 11 0.17
40 52 0.83
ACGTcount: A:0.40, C:0.17, G:0.01, T:0.42
Consensus pattern (40 bp):
TCCATATAACCAATTCATATAATCATTTTATATATCTATT
Found at i:34489681 original size:20 final size:20
Alignment explanation
Indices: 34489658--34489697 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
34489648 GGTTTTAAAG
34489658 TTAA-TTAAAATTTTGAAATA
1 TTAATTTAAAATTTT-AAATA
34489678 TTAATTTAAAATTTTAAATA
1 TTAATTTAAAATTTTAAATA
34489698 AGTTTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TTAATTTAAAATTTTAAATA
Found at i:34497457 original size:69 final size:71
Alignment explanation
Indices: 34497331--34497461 Score: 185
Period size: 69 Copynumber: 1.9 Consensus size: 71
34497321 GTTCTGGACA
* * *
34497331 TTGTTTTGATAGTCTGCTGGAAAATGTTATTTTAGTTTGTTAGTGAGTAGAAGATGAAACTGTTG
1 TTGTTTTGATAGTCTGCTGGAAAATGTTACTTGAGTTTGTTAGTCAGTAGAAGATGAAACTGTTG
34497396 TGGCAG
66 TGGCAG
* ** *
34497402 TTGTTTTGATTGTCTGCTGGAACTTGTT-CTTGA-TTTGTTAGTCAGTAGAATATGAAACTG
1 TTGTTTTGATAGTCTGCTGGAAAATGTTACTTGAGTTTGTTAGTCAGTAGAAGATGAAACTG
34497462 GAACTTTATT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
69 25 0.47
70 3 0.06
71 25 0.47
ACGTcount: A:0.24, C:0.08, G:0.26, T:0.43
Consensus pattern (71 bp):
TTGTTTTGATAGTCTGCTGGAAAATGTTACTTGAGTTTGTTAGTCAGTAGAAGATGAAACTGTTG
TGGCAG
Found at i:34498783 original size:33 final size:33
Alignment explanation
Indices: 34498675--34498790 Score: 171
Period size: 33 Copynumber: 3.5 Consensus size: 33
34498665 CAATGTATAC
*
34498675 TTAGATCAATTATACATACACCAACAATTAATT
1 TTAGGTCAATTATACATACACCAACAATTAATT
* * * *
34498708 TTAGGGT-AAATAAAAATAAACCAACAATTAATT
1 TTA-GGTCAATTATACATACACCAACAATTAATT
34498741 TTAGGTCAATTATACATACACCAACAATTAATT
1 TTAGGTCAATTATACATACACCAACAATTAATT
34498774 TTAGGTCAATTATACAT
1 TTAGGTCAATTATACAT
34498791 GCTTTATAAT
Statistics
Matches: 72, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
32 3 0.04
33 67 0.93
34 2 0.03
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.33
Consensus pattern (33 bp):
TTAGGTCAATTATACATACACCAACAATTAATT
Found at i:34501984 original size:92 final size:92
Alignment explanation
Indices: 34501827--34502020 Score: 277
Period size: 92 Copynumber: 2.1 Consensus size: 92
34501817 TTGATTTTAG
* * *
34501827 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
34501892 ATTTAAT-ATTAATTATTTTAAATTGTA
66 ATGTAATAATT-ATTATTTTAAATTATA
*
34501919 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATT
1 TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATT
34501982 ATATGTAATAATTATTATTTTAAATTATA
64 ATATGTAATAATTATTATTTTAAATTATA
*
34502011 CAAATTCATA
1 TAAATTCATA
34502021 AAATATAATT
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
90 1 0.01
91 29 0.32
92 59 0.64
93 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (92 bp):
TAAATTCATATAAGAACAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:34501998 original size:24 final size:25
Alignment explanation
Indices: 34501963--34502010 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
34501953 TTATGAAATT
34501963 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
34501987 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
34502011 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:34502206 original size:15 final size:15
Alignment explanation
Indices: 34502171--34502222 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
34502161 TTAAGAATTT
*
34502171 TATTAAATTAT-ATA
1 TATTTAATTATAATA
34502185 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
34502199 TATTTAATAATAAT-
1 TATTTAATTATAATA
34502213 TATGTTAATT
1 TAT-TTAATT
34502223 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:34502253 original size:120 final size:120
Alignment explanation
Indices: 34502051--34502458 Score: 716
Period size: 120 Copynumber: 3.4 Consensus size: 120
34502041 TTATTTTAAA
* *
34502051 TTTATTAAATCATATATTTTAA-TAAAATATATTTAATATTAATTAT-TTCAAATTT-TA-TTTA
1 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATTTTA
*
34502112 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAAT
64 CAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAAT
*
34502169 TTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACA
1 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
34502234 GTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAAT
66 GTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAAT
34502289 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
1 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
*
34502354 GCATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAAT
66 GTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAAT
*
34502409 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAATTATGTT
1 TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
34502459 TAAATATGAT
Statistics
Matches: 279, Mismatches: 7, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
118 26 0.09
119 24 0.09
120 229 0.82
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
GTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAAT
Found at i:34502280 original size:66 final size:65
Alignment explanation
Indices: 34502204--34502401 Score: 197
Period size: 66 Copynumber: 3.2 Consensus size: 65
34502194 TAATATATTT
34502204 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATAATAATTATGTTAATTTATATTTTACAG-ATCATATATTATGATTTGAGTAAATTCATATAA
34502269 G
65 G
* * * * *
34502270 AATATTAATTAT-TAAGAATTT-TA--TTA-A-AT--TATA-TAT--TTTAATTAAAAT-ATAT-
1 AATAATAATTATGT--TAATTTATATTTTACAGATCATATATTATGATTTGAGTAAATTCATATA
**
34502322 TT
64 AG
34502324 AATAATAATTATGTTAATTTATATTTTACAGCATCATATATTATGATTTGAGTAAATTCATATAA
1 AATAATAATTATGTTAATTTATATTTTACAG-ATCATATATTATGATTTGAGTAAATTCATATAA
34502389 G
65 G
*
34502390 AATATTAATTAT
1 AATAATAATTAT
34502402 TAAGAATTTT
Statistics
Matches: 101, Mismatches: 15, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
53 5 0.05
54 13 0.13
55 5 0.05
56 12 0.12
57 1 0.01
58 3 0.03
59 6 0.06
61 6 0.06
62 3 0.03
63 1 0.01
64 12 0.12
65 5 0.05
66 24 0.24
67 5 0.05
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.47
Consensus pattern (65 bp):
AATAATAATTATGTTAATTTATATTTTACAGATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:34502315 original size:18 final size:17
Alignment explanation
Indices: 34502287--34502321 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
34502277 ATTATTAAGA
*
34502287 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
34502304 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
34502322 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:34502435 original size:18 final size:17
Alignment explanation
Indices: 34502407--34502441 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
34502397 ATTATTAAGA
*
34502407 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
34502424 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
34502442 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:34502441 original size:16 final size:16
Alignment explanation
Indices: 34502407--34502461 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
34502397 ATTATTAAGA
34502407 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
34502424 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
34502440 A-TTTAATAAAAAT-T
1 ATTTTAATTAAAATAT
34502454 ATGTTTAA
1 AT-TTTAA
34502462 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:34503990 original size:45 final size:45
Alignment explanation
Indices: 34503926--34504113 Score: 247
Period size: 45 Copynumber: 4.2 Consensus size: 45
34503916 TACTACGTGT
* * * *
34503926 ACCGGGTACCAATGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
1 ACCGGGTATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
*
34503971 ACCGGGTATCATTGATTATAAAGGTGGTTGCTGTGTGCTGATTCC
1 ACCGGGTATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
* *
34504016 ACCGGGTA-CTATTGATTATTAAGGTGGTTGCTATGTTCTGATTCC
1 ACCGGGTATC-ATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
* * *
34504061 ACCGAGTATCATTGACTATAAGGGTGG-TGCTATGTGCTGA-TCC
1 ACCGGGTATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
*
34504104 ACCGTGTATC
1 ACCGGGTATC
34504114 TGTTATTATT
Statistics
Matches: 129, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
43 12 0.09
44 13 0.10
45 103 0.80
46 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (45 bp):
ACCGGGTATCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCC
Found at i:34508628 original size:37 final size:37
Alignment explanation
Indices: 34508578--34508652 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
34508568 AATTTCAATA
34508578 TTACTTCAAACAAATTTTGATTACAAATATAATTACC
1 TTACTTCAAACAAATTTTGATTACAAATATAATTACC
34508615 TTACTTCAAACAAATTTTGATTACAAATATAATTACC
1 TTACTTCAAACAAATTTTGATTACAAATATAATTACC
34508652 T
1 T
34508653 AACATGATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.39
Consensus pattern (37 bp):
TTACTTCAAACAAATTTTGATTACAAATATAATTACC
Found at i:34508638 original size:20 final size:20
Alignment explanation
Indices: 34508577--34508638 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
34508567 AAATTTCAAT
34508577 ATTACTTCAAACAAATTTTG
1 ATTACTTCAAACAAATTTTG
* **
34508597 ATTA---CAAATATAA-TTAC
1 ATTACTTCAAACA-AATTTTG
*
34508614 CTTACTTCAAACAAATTTTG
1 ATTACTTCAAACAAATTTTG
34508634 ATTAC
1 ATTAC
34508639 AAATATAATT
Statistics
Matches: 29, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
17 10 0.34
18 2 0.07
19 2 0.07
20 15 0.52
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (20 bp):
ATTACTTCAAACAAATTTTG
Found at i:34517296 original size:19 final size:19
Alignment explanation
Indices: 34517272--34517310 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
34517262 TTCTTGAAAC
34517272 TATACTTGTCTTGTGGTTA
1 TATACTTGTCTTGTGGTTA
34517291 TATACTTGTCTTGTGGTTA
1 TATACTTGTCTTGTGGTTA
34517310 T
1 T
34517311 GTGAACATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.10, G:0.21, T:0.54
Consensus pattern (19 bp):
TATACTTGTCTTGTGGTTA
Found at i:34532814 original size:51 final size:50
Alignment explanation
Indices: 34532738--34532922 Score: 194
Period size: 51 Copynumber: 3.7 Consensus size: 50
34532728 CTGGTTCACA
* * * *
34532738 TAGTAGCCTGCACTTAGTACTACACATGTGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCCGGTACACG
* * * * * * *
34532789 TAGTAACCTACACATAGTACTACACACATGATCGA-AGCTAACCGGTACACA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCCGGTACACG
* * *
34532840 TAGTAGCTTGCACATAGTACTACACATGTGACC-TATCATTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCCGGTACACG
34532890 TAGTAGCCTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
34532923 TAGCAACTTC
Statistics
Matches: 107, Mismatches: 23, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
49 1 0.01
50 43 0.40
51 61 0.57
52 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCCGGTACACG
Found at i:34532858 original size:102 final size:101
Alignment explanation
Indices: 34532734--34532916 Score: 278
Period size: 102 Copynumber: 1.8 Consensus size: 101
34532724 ATATCTGGTT
* *
34532734 CACATAGTAGCCTGCACTTAGTACTACACATGTGACCATTTTCA-TCCGATACACGTAGTAACCT
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACC--TATCATTCCGATACACGTAGTAACCT
34532798 ACACATAGTACTACACACATGATCGAAGCTAACCGGTA
64 ACACATAGTACTACACACATGATCGAAGCTAACCGGTA
* * * * *
34532836 CACATAGTAGCTTGCACATAGTACTACACATGTGACCTATCATTCTGGTACACGTAGTAGCCTGC
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCCGATACACGTAGTAACCTAC
34532901 ACATAGTACTACACAC
66 ACATAGTACTACACAC
34532917 GTGACCTAGC
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 34 0.47
102 35 0.48
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (101 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCCGATACACGTAGTAACCTAC
ACATAGTACTACACACATGATCGAAGCTAACCGGTA
Found at i:34547670 original size:69 final size:69
Alignment explanation
Indices: 34547559--34547696 Score: 276
Period size: 69 Copynumber: 2.0 Consensus size: 69
34547549 CTTAATTACC
34547559 TATTTACCCTTTTAAAACATTAATAATTACACTTATACCAAGCCAAGTACATCCACTATGACTAT
1 TATTTACCCTTTTAAAACATTAATAATTACACTTATACCAAGCCAAGTACATCCACTATGACTAT
34547624 TATT
66 TATT
34547628 TATTTACCCTTTTAAAACATTAATAATTACACTTATACCAAGCCAAGTACATCCACTATGACTAT
1 TATTTACCCTTTTAAAACATTAATAATTACACTTATACCAAGCCAAGTACATCCACTATGACTAT
34547693 TATT
66 TATT
34547697 GGTCCAATTA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (69 bp):
TATTTACCCTTTTAAAACATTAATAATTACACTTATACCAAGCCAAGTACATCCACTATGACTAT
TATT
Found at i:34553203 original size:17 final size:17
Alignment explanation
Indices: 34553181--34553240 Score: 120
Period size: 17 Copynumber: 3.5 Consensus size: 17
34553171 GATACAGGGG
34553181 ACACACGACCGTGTGTC
1 ACACACGACCGTGTGTC
34553198 ACACACGACCGTGTGTC
1 ACACACGACCGTGTGTC
34553215 ACACACGACCGTGTGTC
1 ACACACGACCGTGTGTC
34553232 ACACACGAC
1 ACACACGAC
34553241 TGAGACACAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 43 1.00
ACGTcount: A:0.27, C:0.37, G:0.22, T:0.15
Consensus pattern (17 bp):
ACACACGACCGTGTGTC
Found at i:34581515 original size:26 final size:26
Alignment explanation
Indices: 34581451--34581516 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
34581441 AATTCTGACC
34581451 CACAACTCGTGTGAGCAGACCCATTT
1 CACAACTCGTGTGAGCAGACCCATTT
* * * * *
34581477 CATAGCTCATGTGAGCATACCTATTT
1 CACAACTCGTGTGAGCAGACCCATTT
34581503 CACAACTCGTGTGA
1 CACAACTCGTGTGA
34581517 ACAACTATGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
CACAACTCGTGTGAGCAGACCCATTT
Found at i:34588273 original size:24 final size:24
Alignment explanation
Indices: 34588246--34588319 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
34588236 GCTGCTGATT
*
34588246 TTTAAAAGATGTATAATGCTCTCC
1 TTTAAATGATGTATAATGCTCTCC
34588270 TTTAAATGATG--TAATAG--CTCC
1 TTTAAATGATGTATAAT-GCTCTCC
*
34588291 TTTAAATGATGTATAATTCTCTCC
1 TTTAAATGATGTATAATGCTCTCC
34588315 TTTAA
1 TTTAA
34588320 TTAATGTAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
21 15 0.35
22 4 0.09
23 5 0.12
24 19 0.44
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (24 bp):
TTTAAATGATGTATAATGCTCTCC
Found at i:34588313 original size:45 final size:45
Alignment explanation
Indices: 34588246--34588337 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
34588236 GCTGCTGATT
* * *
34588246 TTTAAAAGATGTATAATGCTCTCCTTTAAATGATGTAATAGCTCC
1 TTTAAAAGATGTATAATGCTCTCCTTTAAATAATGTAACAGCCCC
* * *
34588291 TTTAAATGATGTATAATTCTCTCCTTTAATTAATGTAACAGCCCC
1 TTTAAAAGATGTATAATGCTCTCCTTTAAATAATGTAACAGCCCC
34588336 TT
1 TT
34588338 GTATGTAACC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (45 bp):
TTTAAAAGATGTATAATGCTCTCCTTTAAATAATGTAACAGCCCC
Found at i:34588586 original size:40 final size:40
Alignment explanation
Indices: 34588539--34588664 Score: 243
Period size: 40 Copynumber: 3.1 Consensus size: 40
34588529 GTTTAATAAA
*
34588539 AATAAAGTCCAACAACTCAATTATTAACTAAGATGAGTTT
1 AATAAAGTCCAGCAACTCAATTATTAACTAAGATGAGTTT
34588579 AATAAAGTCCAGCAACTCAATTATTAACTAAGATGAGTTT
1 AATAAAGTCCAGCAACTCAATTATTAACTAAGATGAGTTT
34588619 AATAAAGTCCAGCAACTCAATTATTAACTAAGATGAGTTT
1 AATAAAGTCCAGCAACTCAATTATTAACTAAGATGAGTTT
34588659 AATAAA
1 AATAAA
34588665 ATTAAAGTTC
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.29
Consensus pattern (40 bp):
AATAAAGTCCAGCAACTCAATTATTAACTAAGATGAGTTT
Found at i:34606140 original size:50 final size:48
Alignment explanation
Indices: 34606055--34606153 Score: 108
Period size: 50 Copynumber: 2.0 Consensus size: 48
34606045 CTAAAGAAAG
** * *
34606055 AAAGGGACCAAAGTGAAAACCCACAAAGGGAGCTTTGATTCTCAAAAAA
1 AAAGGGACCAAAGTGAAAACCCACAAAAAGAGCTTTAAGTC-CAAAAAA
* * * *
34606104 AAAGGAGACCAAGGTGAAAACTCGCAAAAAGCGCTTTAAGTCCAAAAAA
1 AAAGG-GACCAAAGTGAAAACCCACAAAAAGAGCTTTAAGTCCAAAAAA
34606153 A
1 A
34606154 TAATAAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
49 13 0.32
50 28 0.68
ACGTcount: A:0.48, C:0.18, G:0.20, T:0.13
Consensus pattern (48 bp):
AAAGGGACCAAAGTGAAAACCCACAAAAAGAGCTTTAAGTCCAAAAAA
Found at i:34606192 original size:20 final size:20
Alignment explanation
Indices: 34606149--34606192 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
34606139 TTAAGTCCAA
* * *
34606149 AAAAATAATAAAAATAAACC
1 AAAAATAAGAAAAAAAAAAC
*
34606169 AAAAATAAGAAAAAAAAAAG
1 AAAAATAAGAAAAAAAAAAC
34606189 AAAA
1 AAAA
34606193 GAAAATGGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.82, C:0.05, G:0.05, T:0.09
Consensus pattern (20 bp):
AAAAATAAGAAAAAAAAAAC
Found at i:34607581 original size:88 final size:88
Alignment explanation
Indices: 34607432--34607818 Score: 537
Period size: 88 Copynumber: 4.4 Consensus size: 88
34607422 AACCATAAAT
** * * **
34607432 CTTATCTCCCTGAGCAATAGTGGAGTAGGTTAAAAATAGCAGATCTTGTATTCCTGTATTGGTTG
1 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAG
*
34607497 CGAAGTAGATCAAAGACCTCAGC
66 CGAAGTAGATCGAAGACCTCAGC
* *
34607520 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTGTCTTCTTGTATTGGCAG
1 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAG
* * *
34607585 CGAAGTGGGTCGAATACCTCAGC
66 CGAAGTAGATCGAAGACCTCAGC
* *
34607608 CTTA--TCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAA
1 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAG
* *
34607671 CGAAGTAGATTGAAGATAC-CAGC
66 CGAAGTAGATCGAAGA-CCTCAGC
* * * * *
34607694 CTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGTAGATCTTGTCTTCTTGTACTGGCAG
1 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAG
34607759 CGAAGTAGATCGAAGACCTCAGC
66 CGAAGTAGATCGAAGACCTCAGC
* *
34607782 GTTATCTCCCTGAGCAGCAGTGGGGTAGGTTGAAAAT
1 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT
34607819 GTGATTTTTG
Statistics
Matches: 261, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
86 74 0.28
87 2 0.01
88 185 0.71
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (88 bp):
CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAG
CGAAGTAGATCGAAGACCTCAGC
Found at i:34607732 original size:174 final size:175
Alignment explanation
Indices: 34607432--34607818 Score: 571
Period size: 174 Copynumber: 2.2 Consensus size: 175
34607422 AACCATAAAT
* * ***
34607432 CTTATCTCCCTGAGCAATAGTGGAGTAGGTTAAAAATAGCAGATCTTGTATTCCTGTATTGGTTG
1 CTTA-CTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTATTCCTGTATTGGCAA
* *
34607497 CGAAGTAGATCAAAGACCTCAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAG
65 CGAAGTAGATCAAAGAACTCAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGTAG
* * * *
34607562 ATCTTGTCTTCTTGTATTGGCAGCGAAGTGGGTCGAATACCTCAGC
130 ATCTTGTCTTCTTGTACTGGCAGCGAAGTAGATCGAAGACCTCAGC
*
34607608 CTTA-TCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAAC
1 CTTACTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTATTCCTGTATTGGCAAC
** *
34607672 GAAGTAGATTGAAGATAC-CAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGTAG
66 GAAGTAGATCAAAGA-ACTCAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGTAG
34607736 ATCTTGTCTTCTTGTACTGGCAGCGAAGTAGATCGAAGACCTCAGC
130 ATCTTGTCTTCTTGTACTGGCAGCGAAGTAGATCGAAGACCTCAGC
* * *
34607782 GTTATCTCCCTGAGCAGCAGTGGGGTAGGTTGAAAAT
1 CTTA-CTCCCTGAGCAGTAGTGGAGTAGGTTGAAAAT
34607819 GTGATTTTTG
Statistics
Matches: 190, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
174 156 0.82
175 1 0.01
176 33 0.17
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (175 bp):
CTTACTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTGTATTCCTGTATTGGCAAC
GAAGTAGATCAAAGAACTCAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGTAGA
TCTTGTCTTCTTGTACTGGCAGCGAAGTAGATCGAAGACCTCAGC
Found at i:34607742 original size:44 final size:44
Alignment explanation
Indices: 34607524--34607744 Score: 126
Period size: 43 Copynumber: 5.1 Consensus size: 44
34607514 CTCAGCCTTA
*
34607524 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGTAGATCTTG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTG
* * *** * * * * * ** * *
34607568 TCTTCTTGTATTGGCAGCGAAGTGGGTCG--AATACCTCAGCCT-
1 TCTCCCTG-AGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTG
* *
34607610 TATCCCTGAGCAGTAGTGGAGTAGGTTGAAAATAGCAGATCTTG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTG
* *** ** * * * * *
34607654 TCTTCCTGTATTGGCAACGAAGTAGATTGAAGATACCAG-CCTTG
1 TCTCCCTG-AGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTG
* *
34607698 TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAAATAGTAGATCTTG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTG
34607742 TCT
1 TCT
34607745 TCTTGTACTG
Statistics
Matches: 114, Mismatches: 57, Indels: 12
0.62 0.31 0.07
Matches are distributed among these distances:
41 12 0.11
42 5 0.04
43 34 0.30
44 30 0.26
45 33 0.29
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (44 bp):
TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTG
Found at i:34608229 original size:50 final size:51
Alignment explanation
Indices: 34608111--34608233 Score: 194
Period size: 50 Copynumber: 2.4 Consensus size: 51
34608101 GTCGCATGTC
* * *
34608111 TAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTTTATCACGTGTG
1 TAGTACTATGTGCAGGCTACTATGCGAACCGGAAAGCTTTGATCACGTGTG
*
34608162 TAGTACTATGTGCAGGCTACTATGTGAACCGGAAAG-TTTGATCACGTGTG
1 TAGTACTATGTGCAGGCTACTATGCGAACCGGAAAGCTTTGATCACGTGTG
*
34608212 TAGTACTATGTGAAGGCTACTA
1 TAGTACTATGTGCAGGCTACTA
34608234 CGTGTATCGA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 34 0.51
51 33 0.49
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (51 bp):
TAGTACTATGTGCAGGCTACTATGCGAACCGGAAAGCTTTGATCACGTGTG
Found at i:34615109 original size:41 final size:40
Alignment explanation
Indices: 34615047--34615297 Score: 270
Period size: 41 Copynumber: 6.2 Consensus size: 40
34615037 GATAATTATA
* *
34615047 CCTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACA
1 CCTGAATTGCACATACATGCCCCTG-TTGTACTTCGGTACC
* *
34615088 CTTGAATTGCACATA-ACTGCCCCTGTTGTACTTTGGTACCC
1 CCTGAATTGCACATACA-TGCCCCTGTTGTACTTCGGTA-CC
* * * * *
34615129 CCTAAATTACACATACATGCCTCTGTTTGTACTTCAGTACT
1 CCTGAATTGCACATACATGCCCCTG-TTGTACTTCGGTACC
* * * *
34615170 CCTAAATTGCACATACATACCCCTGTTGTTCTTTGGTACC
1 CCTGAATTGCACATACATGCCCCTGTTGTACTTCGGTACC
* * *
34615210 TCTGAATTGTATATACATGCCCCTGTTGTACTTCGGTACC
1 CCTGAATTGCACATACATGCCCCTGTTGTACTTCGGTACC
* * **
34615250 CCTGAATTGCACATGCGTGCCCCTGTTTGTACTTCAATACC
1 CCTGAATTGCACATACATGCCCCTG-TTGTACTTCGGTACC
34615291 CCTGAAT
1 CCTGAAT
34615298 AGCATTTATG
Statistics
Matches: 173, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
40 76 0.44
41 85 0.49
42 12 0.07
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.34
Consensus pattern (40 bp):
CCTGAATTGCACATACATGCCCCTGTTGTACTTCGGTACC
Found at i:34615233 original size:40 final size:40
Alignment explanation
Indices: 34615048--34615284 Score: 246
Period size: 40 Copynumber: 5.8 Consensus size: 40
34615038 ATAATTATAC
*
34615048 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACACT
1 CTGAATTGCACATACATGCCCCTG-TTGTACTTCGGTAC-CT
* *
34615090 -TGAATTGCACATA-ACTGCCCCTGTTGTACTTTGGTACCCC
1 CTGAATTGCACATACA-TGCCCCTGTTGTACTTCGGTA-CCT
* * * *
34615130 CTAAATTACACATACATGCCTCTGTTTGTACTTCAGTA-CT
1 CTGAATTGCACATACATGCCCCTG-TTGTACTTCGGTACCT
* * * *
34615170 CCTAAATTGCACATACATACCCCTGTTGTTCTTTGGTACCT
1 -CTGAATTGCACATACATGCCCCTGTTGTACTTCGGTACCT
* * *
34615211 CTGAATTGTATATACATGCCCCTGTTGTACTTCGGTACCC
1 CTGAATTGCACATACATGCCCCTGTTGTACTTCGGTACCT
* *
34615251 CTGAATTGCACATGCGTGCCCCTGTTTGTACTTC
1 CTGAATTGCACATACATGCCCCTG-TTGTACTTC
34615285 AATACCCCTG
Statistics
Matches: 161, Mismatches: 26, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
40 77 0.48
41 72 0.45
42 12 0.07
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (40 bp):
CTGAATTGCACATACATGCCCCTGTTGTACTTCGGTACCT
Found at i:34616656 original size:39 final size:40
Alignment explanation
Indices: 34616587--34616673 Score: 113
Period size: 39 Copynumber: 2.2 Consensus size: 40
34616577 GCGTTATACT
* * *
34616587 TTCTGTTCGGCGTGATTCGAGTGGATCAGCTCTTACGAGC
1 TTCTGTTCGGCATGATTCGAGTGGACCAGCTCTTACAAGC
* * *
34616627 TTCTGTT-GGCATGTTTCGGGTGGACCAGCTCTTATAAGC
1 TTCTGTTCGGCATGATTCGAGTGGACCAGCTCTTACAAGC
34616666 TTCTGTTC
1 TTCTGTTC
34616674 AGCTCTTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
39 33 0.82
40 7 0.17
ACGTcount: A:0.14, C:0.22, G:0.28, T:0.37
Consensus pattern (40 bp):
TTCTGTTCGGCATGATTCGAGTGGACCAGCTCTTACAAGC
Found at i:34616678 original size:21 final size:21
Alignment explanation
Indices: 34616652--34616693 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
34616642 TCGGGTGGAC
34616652 CAGCTCTTATAAGCTTCTGTT
1 CAGCTCTTATAAGCTTCTGTT
34616673 CAGCTCTTATAAGCTTCTGTT
1 CAGCTCTTATAAGCTTCTGTT
34616694 TGGCCTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (21 bp):
CAGCTCTTATAAGCTTCTGTT
Found at i:34616728 original size:61 final size:60
Alignment explanation
Indices: 34616612--34616733 Score: 163
Period size: 61 Copynumber: 2.0 Consensus size: 60
34616602 TTCGAGTGGA
* *
34616612 TCAGCTCTTACGAGCTTCTGTTGGCATGTTTCGGGTGGACCAGCTCTTATAAGCTTCTGT
1 TCAGCTCTTACAAGCTTCTGTTGGCATGTTTCGAGTGGACCAGCTCTTATAAGCTTCTGT
* * * * * *
34616672 TCAGCTCTTATAAGCTTCTGTTTGGCCTGTTTCGATTGGATCATCTCTTATGAGCTTCTGT
1 TCAGCTCTTACAAGCTTCTG-TTGGCATGTTTCGAGTGGACCAGCTCTTATAAGCTTCTGT
34616733 T
1 T
34616734 TGGTGTGTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
60 18 0.34
61 35 0.66
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.41
Consensus pattern (60 bp):
TCAGCTCTTACAAGCTTCTGTTGGCATGTTTCGAGTGGACCAGCTCTTATAAGCTTCTGT
Found at i:34616778 original size:40 final size:39
Alignment explanation
Indices: 34616672--34616788 Score: 164
Period size: 40 Copynumber: 2.9 Consensus size: 39
34616662 AAGCTTCTGT
* *
34616672 TCAGCTCTTATAAGCTTCTGTTTGGCCTGT-TTCGATTGGA
1 TCAGCTCTTATGAGCTTCTGTTTGG--TGTGTTCGGTTGGA
*
34616712 TCATCTCTTATGAGCTTCTGTTTGGTGTGTTCCGGTTGGA
1 TCAGCTCTTATGAGCTTCTGTTTGGTGTGTT-CGGTTGGA
*
34616752 TCAGCTCTTATGAGCTTCTGTCTGGTGTGTTCGGTTG
1 TCAGCTCTTATGAGCTTCTGTTTGGTGTGTTCGGTTG
34616789 ATCTGATGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
38 3 0.04
39 8 0.11
40 59 0.84
ACGTcount: A:0.11, C:0.19, G:0.26, T:0.44
Consensus pattern (39 bp):
TCAGCTCTTATGAGCTTCTGTTTGGTGTGTTCGGTTGGA
Found at i:34625232 original size:13 final size:14
Alignment explanation
Indices: 34625204--34625234 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
34625194 CTTTGTTTTG
34625204 ATTATTTTACTTAA
1 ATTATTTTACTTAA
34625218 ATTATTTTA-TTAA
1 ATTATTTTACTTAA
34625231 ATTA
1 ATTA
34625235 CCTCTATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTATTTTACTTAA
Found at i:34628046 original size:3 final size:3
Alignment explanation
Indices: 34628040--34628065 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
34628030 CACGAAATTA
34628040 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
34628066 GGTGCCAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:34633358 original size:27 final size:27
Alignment explanation
Indices: 34633340--34633642 Score: 178
Period size: 27 Copynumber: 11.3 Consensus size: 27
34633330 TATAATAGTT
*
34633340 ATTTTACCCTATGGGGGTATTTCAATC
1 ATTTTACCCTATGGGGGTATATCAATC
* * **
34633367 ATTTTACCCTATGGGGTTATTTCGGTC
1 ATTTTACCCTATGGGGGTATATCAATC
* ** * * *
34633394 ATTCTACCCTATAAGAGTATTTCGATC
1 ATTTTACCCTATGGGGGTATATCAATC
* **
34633421 ATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATATCAATC
* * * *
34633448 ATTTTACCCTATGGGGATATTTCGATT
1 ATTTTACCCTATGGGGGTATATCAATC
* *
34633475 ATTTTACCCTAT-GGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATATCAATC
* * * **
34633501 ATTTTACCTTATGGTGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATATCAATC
** * * ** *
34633528 -TTTTTTCTTATGGGGGTATTTCGGTT
1 ATTTTACCCTATGGGGGTATATCAATC
* * * **
34633554 ATTTTACCATATAGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATATCAATC
* * * ** *
34633581 ATTTTACCCTATAGAGGTATTTCGTTT
1 ATTTTACCCTATGGGGGTATATCAATC
* * *
34633608 ATTTTACCCTATAGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATATCAATC
34633635 ATTTTACC
1 ATTTTACC
34633643 TATTTTGGGG
Statistics
Matches: 236, Mismatches: 38, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 45 0.19
27 191 0.81
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATATCAATC
Found at i:34633414 original size:54 final size:53
Alignment explanation
Indices: 34633340--34633642 Score: 369
Period size: 54 Copynumber: 5.7 Consensus size: 53
34633330 TATAATAGTT
* *
34633340 ATTTTACCCTATGGGGGTATTTCAATCATTTTACCCTATGGGGTTATTTCGGTC
1 ATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGGGG-TATTTCGGTC
* * *
34633394 ATTCTACCCTATAAGAGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTAT-GGGGTATTTCGGTC
* *
34633448 ATTTTACCCTAT-GGGGATATTTCGATTATTTTACCCTATGGGGTATTTCGATC
1 ATTTTACCCTATAGGGG-TATTTCGATCATTTTACCCTATGGGGTATTTCGGTC
* * ** * *
34633501 ATTTTACCTTAT-GGTGGTATTTCGGTC-TTTTTTCTTATGGGGGTATTTCGGTT
1 ATTTTACCCTATAGG-GGTATTTCGATCATTTTACCCTAT-GGGGTATTTCGGTC
* * * * *
34633554 ATTTTACCATATAGGGGTATTTCGGTCATTTTACCCTATAGAGGTATTTCGTTT
1 ATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTAT-GGGGTATTTCGGTC
34633608 ATTTTACCCTATAGGGGTATTTCGATCATTTTACC
1 ATTTTACCCTATAGGGGTATTTCGATCATTTTACC
34633643 TATTTTGGGG
Statistics
Matches: 216, Mismatches: 27, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
52 8 0.04
53 71 0.33
54 133 0.62
55 4 0.02
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.44
Consensus pattern (53 bp):
ATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGGGGTATTTCGGTC
Found at i:34633450 original size:81 final size:80
Alignment explanation
Indices: 34633340--34633642 Score: 376
Period size: 81 Copynumber: 3.8 Consensus size: 80
34633330 TATAATAGTT
** * *
34633340 ATTTTACCCTATGGGGGTATTTCAATCATTTTACCCTATGGGGTTATTTCGGTCATTCTACCCTA
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGG-TATTTCGATCATTTTACCCTA
* *
34633405 TAAGAGTATTTCGATC
65 TAGGGGTATTTCGATC
*
34633421 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGATATTTCGATTATTTTACCCTA
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGG-TATTTCGATCATTTTACCCTA
34633486 T-GGGGTATTTCGATC
65 TAGGGGTATTTCGATC
* * ** * * * *
34633501 ATTTTACCTTATGGTGGTATTTCGGTC-TTTTTTCTTATGGGGGTATTTCGGTTATTTTACCATA
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGATCATTTTACCCTA
*
34633565 TAGGGGTATTTCGGTC
65 TAGGGGTATTTCGATC
* * * *
34633581 ATTTTACCCTATAGAGGTATTTCGTTTATTTTACCCTATAGGGGTATTTCGATCATTTTACC
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGATCATTTTACC
34633643 TATTTTGGGG
Statistics
Matches: 192, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
79 28 0.15
80 76 0.40
81 88 0.46
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.44
Consensus pattern (80 bp):
ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCGATCATTTTACCCTAT
AGGGGTATTTCGATC
Found at i:34638001 original size:20 final size:20
Alignment explanation
Indices: 34637948--34637997 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
34637938 TTTATGTCTC
34637948 AATGTTATATATTATAAAAAT
1 AATGTTATAT-TTATAAAAAT
*
34637969 AAT-ATACTTATTTATAAAAA-
1 AATGTTA--TATTTATAAAAAT
34637989 AATGTTATA
1 AATGTTATA
34637998 ATTTTTTATC
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
19 2 0.08
20 5 0.21
21 14 0.58
22 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (20 bp):
AATGTTATATTTATAAAAAT
Found at i:34638264 original size:40 final size:40
Alignment explanation
Indices: 34638160--34638264 Score: 117
Period size: 39 Copynumber: 2.6 Consensus size: 40
34638150 GTTTGGACAA
34638160 AAAACGCAGCTAAAAATCA-AGCATTAGCGGCACTTTTAGG
1 AAAACGCAGCTAAAAAT-AGAGCATTAGCGGCACTTTTAGG
* * * * *
34638200 AAAACACGGCT-AAAATAGAGCATTAGTGGCGCTTTT-TG
1 AAAACGCAGCTAAAAATAGAGCATTAGCGGCACTTTTAGG
*
34638238 AGAAACGCTGCTAAAAATAGAGCATTA
1 A-AAACGCAGCTAAAAATAGAGCATTA
34638265 TCGGTGTTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
38 3 0.05
39 29 0.53
40 23 0.42
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (40 bp):
AAAACGCAGCTAAAAATAGAGCATTAGCGGCACTTTTAGG
Found at i:34638796 original size:14 final size:14
Alignment explanation
Indices: 34638779--34638827 Score: 71
Period size: 14 Copynumber: 3.4 Consensus size: 14
34638769 TATGATTTAT
*
34638779 GGTTTAAGGGTTAG
1 GGTTTAGGGGTTAG
34638793 GGTTTAGGGGTTAG
1 GGTTTAGGGGTTAG
*
34638807 GGGTTAGGGGTTTAG
1 GGTTTAGGGG-TTAG
34638822 GGTTTA
1 GGTTTA
34638828 TTATTTACGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
14 22 0.71
15 9 0.29
ACGTcount: A:0.16, C:0.00, G:0.47, T:0.37
Consensus pattern (14 bp):
GGTTTAGGGGTTAG
Found at i:34638798 original size:21 final size:22
Alignment explanation
Indices: 34638774--34638827 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
34638764 GAGATTATGA
*
34638774 TTTATGGTTTAAGGGTTA-GGG
1 TTTAGGGTTTAAGGGTTAGGGG
* *
34638795 TTTAGGGGTTAGGGGTTAGGGG
1 TTTAGGGTTTAAGGGTTAGGGG
34638817 TTTAGGGTTTA
1 TTTAGGGTTTA
34638828 TTATTTACGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.41
Consensus pattern (22 bp):
TTTAGGGTTTAAGGGTTAGGGG
Found at i:34638799 original size:7 final size:7
Alignment explanation
Indices: 34638774--34638856 Score: 60
Period size: 7 Copynumber: 11.7 Consensus size: 7
34638764 GAGATTATGA
*
34638774 TTTATGG
1 TTTAGGG
34638781 TTTAAGGG
1 TTT-AGGG
34638789 -TTAGGG
1 TTTAGGG
34638795 TTTAGGG
1 TTTAGGG
*
34638802 GTTAGGG
1 TTTAGGG
*
34638809 GTTAGGGG
1 TTTA-GGG
34638817 TTTAGGG
1 TTTAGGG
***
34638824 TTTATTA
1 TTTAGGG
* *
34638831 TTTACGT
1 TTTAGGG
*
34638838 TTTAAGG
1 TTTAGGG
34638845 TTTAGGG
1 TTTAGGG
34638852 TTTAG
1 TTTAG
34638857 AAGATAAAGA
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
6 4 0.07
7 48 0.79
8 9 0.15
ACGTcount: A:0.18, C:0.01, G:0.36, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:34643207 original size:233 final size:233
Alignment explanation
Indices: 34642790--34643251 Score: 852
Period size: 233 Copynumber: 2.0 Consensus size: 233
34642780 AATCCTTTTA
34642790 TTTTCACATGTTGCCATGCTAAACTAGCAGCCCGCTTATCTTAATTTTGCAGTCACTACTCAGAG
1 TTTTCACATGTTGCCATGCTAAACTAGCAGCCCGCTTATCTTAATTTTGCAGTCACTACTCAGAG
*
34642855 ATAGGTTCTTGCATGAAAGACCTGTTGAAGAGGAGAGACCACCTTCAGTGGTAGTGAGTGAATTA
66 ATAGGTTCTTGCATGAAAGACCTGTTGAAGAGGAGAGACCACCTTCAGTGGCAGTGAGTGAATTA
* * *
34642920 AATTAATTAAGTCACAACTCATAAGTAAAATATCCATTAGCCCGTTACTTTATTAGAATGTGTTA
131 AATCAATTAAGTCACAACTCAGAAGTAAAATATCCATTAGCCCGTTAATTTATTAGAATGTGTTA
34642985 TATTTCCTCAACAATGTCTAATTGGAGTTTATAGTTTG
196 TATTTCCTCAACAATGTCTAATTGGAGTTTATAGTTTG
* * *
34643023 TTTTCACATGTTGCCATGCTAAACTAGCAGCTCTCTTATCTTAATTTTGCAGTCACTACTTAGAG
1 TTTTCACATGTTGCCATGCTAAACTAGCAGCCCGCTTATCTTAATTTTGCAGTCACTACTCAGAG
34643088 ATAGGTTCTTGCATGAAAGACCTGTTGAAGAGGAGAGACCACCTTCAGTGGCAGTGAGTGAATTA
66 ATAGGTTCTTGCATGAAAGACCTGTTGAAGAGGAGAGACCACCTTCAGTGGCAGTGAGTGAATTA
*
34643153 AATCAATTAAGTCACAACTCAGAAGTAAAATATCCATTAGCCTGTTAATTTATTAGAATGTGTTA
131 AATCAATTAAGTCACAACTCAGAAGTAAAATATCCATTAGCCCGTTAATTTATTAGAATGTGTTA
34643218 TATTTCCTCAACAATGTCTAATTGGAGTTTATAG
196 TATTTCCTCAACAATGTCTAATTGGAGTTTATAG
34643252 AAGCAATAAA
Statistics
Matches: 221, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
233 221 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (233 bp):
TTTTCACATGTTGCCATGCTAAACTAGCAGCCCGCTTATCTTAATTTTGCAGTCACTACTCAGAG
ATAGGTTCTTGCATGAAAGACCTGTTGAAGAGGAGAGACCACCTTCAGTGGCAGTGAGTGAATTA
AATCAATTAAGTCACAACTCAGAAGTAAAATATCCATTAGCCCGTTAATTTATTAGAATGTGTTA
TATTTCCTCAACAATGTCTAATTGGAGTTTATAGTTTG
Found at i:34650556 original size:20 final size:20
Alignment explanation
Indices: 34650531--34650570 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
34650521 CGTAAAATGA
*
34650531 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
34650551 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
34650571 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:34650560 original size:34 final size:35
Alignment explanation
Indices: 34650516--34650582 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
34650506 CAGTAAAATA
*
34650516 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
34650550 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
34650583 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:34650586 original size:14 final size:15
Alignment explanation
Indices: 34650510--34650586 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
34650500 GATTGCCAGT
* *
34650510 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
34650524 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
34650538 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
34650558 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
34650573 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
34650587 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:34653101 original size:102 final size:100
Alignment explanation
Indices: 34652925--34653128 Score: 338
Period size: 102 Copynumber: 2.0 Consensus size: 100
34652915 TATGTGTGTT
34652925 GATCATACAAGTGTCTCAAATGTCAAATTCTTTTATTCCATGAGTTGATGTTTACTTATCCAGTT
1 GATCATACAAGTGTCTCAAATGTC-AATTCTTTTATTCCATGAGTTGATGTTTACTTATCCAGTT
*
34652990 CCTTCGGTTAGAGCCCTTTTAGATTTTAAGCAAATAA
65 CCTTCGGTTAGAGCCC-TTAAGATTTTAAGCAAATAA
*
34653027 GATCATACAAGTGTCTCAAATGTC-ATTCTTTTATTCCATGAGTTGATGTTTTTACTTATCCGGT
1 GATCATACAAGTGTCTCAAATGTCAATTCTTTTATTCCATGAGTTGATG--TTTACTTATCCAGT
*
34653091 TCCTTCGGTTAGAGCCCTTAATATTTTAAGCAAATAA
64 TCCTTCGGTTAGAGCCCTTAAGATTTTAAGCAAATAA
34653128 G
1 G
34653129 TTGCTCCAAG
Statistics
Matches: 97, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
100 24 0.25
101 19 0.20
102 54 0.56
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (100 bp):
GATCATACAAGTGTCTCAAATGTCAATTCTTTTATTCCATGAGTTGATGTTTACTTATCCAGTTC
CTTCGGTTAGAGCCCTTAAGATTTTAAGCAAATAA
Found at i:34657195 original size:30 final size:30
Alignment explanation
Indices: 34657159--34657218 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
34657149 AATGTAATAA
*
34657159 TATAAAAGAA-AATTTTAAAAATAAATACAT
1 TATAAAAGAAGAATATTAAAAA-AAATACAT
* *
34657189 TATAAAATAAGACTATTAAAAAAAATACAT
1 TATAAAAGAAGAATATTAAAAAAAATACAT
34657219 ACTAATTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.28
Consensus pattern (30 bp):
TATAAAAGAAGAATATTAAAAAAAATACAT
Found at i:34657197 original size:16 final size:15
Alignment explanation
Indices: 34657173--34657218 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
34657163 AAAGAAAATT
34657173 TTAAAAATAAATACA
1 TTAAAAATAAATACA
*
34657188 TTATAAAAT-AAGACTA
1 TTA-AAAATAAATAC-A
34657204 TTAAAAA-AAATACA
1 TTAAAAATAAATACA
34657218 T
1 T
34657219 ACTAATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
14 2 0.08
15 15 0.58
16 9 0.35
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (15 bp):
TTAAAAATAAATACA
Found at i:34657314 original size:24 final size:23
Alignment explanation
Indices: 34657258--34657416 Score: 127
Period size: 24 Copynumber: 7.0 Consensus size: 23
34657248 TATACATAAA
* *
34657258 AATAGTATATGATAGATAT-AAAT
1 AATAGTA-ATGATAAATTTAAAAT
*
34657281 AAT-G-ATATGATAAGTTTAAAAT
1 AATAGTA-ATGATAAATTTAAAAT
* *
34657303 TATAGTACATGATAAATTTCAAAT
1 AATAGTA-ATGATAAATTTAAAAT
*
34657327 TATGATGT-ATGATAAATTT-AAAT
1 AAT-A-GTAATGATAAATTTAAAAT
*
34657350 AATATTAATGAT-AATTTAAAAT
1 AATAGTAATGATAAATTTAAAAT
34657372 AATAGT-AT-ATTAAATATTAAAAT
1 AATAGTAATGA-TAAAT-TTAAAAT
*
34657395 AATACTAATGATAAATTTAAAA
1 AATAGTAATGATAAATTTAAAA
34657417 CAATGTTAAA
Statistics
Matches: 113, Mismatches: 11, Indels: 24
0.76 0.07 0.16
Matches are distributed among these distances:
20 1 0.01
21 19 0.17
22 25 0.22
23 28 0.25
24 36 0.32
25 2 0.02
26 2 0.02
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.38
Consensus pattern (23 bp):
AATAGTAATGATAAATTTAAAAT
Found at i:34657395 original size:23 final size:22
Alignment explanation
Indices: 34657339--34657444 Score: 71
Period size: 23 Copynumber: 4.8 Consensus size: 22
34657329 TGATGTATGA
*
34657339 TAAAT-TT-AAATAATATTAAT
1 TAAATATTAAAATAATAGTAAT
*
34657359 GATAAT-TTAAAATAATAGTATAT
1 TA-AATATTAAAATAATAGTA-AT
*
34657382 TAAATATTAAAATAATACTAAT
1 TAAATATTAAAATAATAGTAAT
*
34657404 GATAAAT-TTAAAACAAT-GTTAAACT
1 --TAAATATTAAAATAATAG-T-AA-T
34657429 TAAATATT-AAATAATA
1 TAAATATTAAAATAATA
34657445 CTAGATTTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
20 1 0.01
21 5 0.07
22 15 0.22
23 37 0.54
24 9 0.13
25 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.04, T:0.38
Consensus pattern (22 bp):
TAAATATTAAAATAATAGTAAT
Found at i:34657395 original size:45 final size:46
Alignment explanation
Indices: 34657339--34657447 Score: 145
Period size: 46 Copynumber: 2.4 Consensus size: 46
34657329 TGATGTATGA
* * *
34657339 TAAAT-TTAAATAATATTAATGAT-AATTTAAAATAATAG-TATA-T
1 TAAATATTAAATAATACTAATGATAAATTTAAAACAAT-GTTAAACT
34657382 TAAATATTAAAATAATACTAATGATAAATTTAAAACAATGTTAAACT
1 TAAATATT-AAATAATACTAATGATAAATTTAAAACAATGTTAAACT
34657429 TAAATATTAAATAATACTA
1 TAAATATTAAATAATACTA
34657448 GATTTAAAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
43 5 0.09
44 2 0.03
45 16 0.28
46 26 0.45
47 9 0.16
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (46 bp):
TAAATATTAAATAATACTAATGATAAATTTAAAACAATGTTAAACT
Found at i:34657454 original size:23 final size:23
Alignment explanation
Indices: 34657365--34657455 Score: 71
Period size: 23 Copynumber: 3.9 Consensus size: 23
34657355 TAATGATAAT
*
34657365 TTAAAATAATAGT-ATATTAAATA
1 TTAAAATAATACTAAT-TTAAATA
*
34657388 TTAAAATAATACTAATGATAAAT-
1 TTAAAATAATACTAAT-TTAAATA
* ** *
34657411 TTAAAACAATGTTAAACTTAAATA
1 TTAAAATAATACT-AATTTAAATA
34657435 TT-AAATAATACTAGATTTAAA
1 TTAAAATAATACTA-ATTTAAA
34657456 AAAATAAATA
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
22 1 0.02
23 40 0.77
24 11 0.21
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (23 bp):
TTAAAATAATACTAATTTAAATA
Found at i:34659348 original size:97 final size:94
Alignment explanation
Indices: 34659211--34659808 Score: 628
Period size: 97 Copynumber: 6.1 Consensus size: 94
34659201 TGACGTCATT
* *
34659211 GAAATAAGATTCGCTGCCTTCAGCTTTAGTCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGC
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCAACGCCAAGGAAATAAGATTCGC
* * *
34659276 TGTCTTCAGCTTTAATC-T-ACTGCGACGCCAGG
61 TGCCTTCAGCTTTAATCTTCACTGCAACGCCAAG
* * *
34659308 GAAATAAGATTCGCTGCCTTCAGCTTTAGTCTGTTCCACTGCAACGCCAATGAAATGAGATTCGC
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCAACGCCAAGGAAATAAGATTCGC
* * * * *
34659373 TACCTTCAGCTTTAATC-T-ACTGCGATGCTAGG
61 TGCCTTCAGCTTTAATCTTCACTGCAACGCCAAG
* * *
34659405 GAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCCAGGAAATGAGATTCGC
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCAACGCCAAGGAAATAAGATTCGC
34659470 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG
61 TGCCTTCAGCTTTAATC--TT-CACTGCAACGCCAAG
* * * *
34659507 GAAATGAGATTCGCTGCCTTCATCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCT
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
34659572 TCAGCTTTAATCTGTTCCACTGCAACGCCAAG
66 TCAGCTTTAATC--TT-CACTGCAACGCCAAG
* * * * *
34659604 GAAATGAGATTCGTTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCTT
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
34659669 TCAGCTTTAATCTGTTCCACTGCAACGCCAAG
66 TCAGCTTTAATC--TT-CACTGCAACGCCAAG
* * * * *
34659701 GAAATGAGATTCGTTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTTGCTGCCT
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
* *
34659766 TCAGCTTTAATTTGTTTCACTGTAACGCCAAG
66 TCAGCTTTAA--T-CTTCACTGCAACGCCAAG
*
34659798 GAAATGAGATT
1 GAAATAAGATT
34659809 GTTGTCTTCA
Statistics
Matches: 465, Mismatches: 28, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
97 422 0.91
98 2 0.00
99 2 0.00
100 1 0.00
102 38 0.08
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (94 bp):
GAAATAAGATTCGCTGCCTTCAGCTTTAATCTACTGCAACGCCAAGGAAATAAGATTCGCTGCCT
TCAGCTTTAATCTTCACTGCAACGCCAAG
Found at i:34659459 original size:148 final size:143
Alignment explanation
Indices: 34659211--34659808 Score: 686
Period size: 148 Copynumber: 4.1 Consensus size: 143
34659201 TGACGTCATT
* * * * *
34659211 GAAATAAGATTCGCTGCCTTCAGCTTTAGTCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGC
1 GAAATGAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTCGC
* * *
34659276 TGTCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTG
61 TGCCTTCAGCTTTAATCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
*
34659341 TTCCACTGCAACGCCAAT
126 TTCCACTGCAACGCCAAG
* * * *
34659359 GAAATGAGATTCGCTACCTTCAGCTTTAATCTACTGCGATGCTAGGGAAATAAGATTCACTGCCT
1 GAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCT
*
34659424 TCAGCTTTAATCTGTTCCACTGCAACGCCCA-GGAAATGAGATTCGCTGCCTTCAGCTTTAATCT
66 TCAGCTTTAATC---T--ACTGCAACG-CCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCT
34659488 GTTCCACTGCAACGCCAAG
125 GTTCCACTGCAACGCCAAG
*
34659507 GAAATGAGATTCGCTGCCTTCATCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCT
1 GAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCT
* * *
34659572 TCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGTTGCCTTCAGCTTTAATC--
66 TCAGCTTTAATC---T--ACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
* *
34659635 -T--ACTGCGACGCCAGG
126 TTCCACTGCAACGCCAAG
* * * * * *
34659650 GAAATAAGATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGT
1 GAAATGAGATTCGCTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTCGC
* * *
34659715 TGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATTTG
61 TGCCTTCAGCTTTAATCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
* *
34659780 TTTCACTGTAACGCCAAG
126 TTCCACTGCAACGCCAAG
34659798 GAAATGAGATT
1 GAAATGAGATT
34659809 GTTGTCTTCA
Statistics
Matches: 394, Mismatches: 39, Indels: 34
0.84 0.08 0.07
Matches are distributed among these distances:
143 117 0.30
145 3 0.01
146 3 0.01
147 3 0.01
148 265 0.67
149 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (143 bp):
GAAATGAGATTCGCTGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCT
TCAGCTTTAATCTACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCA
CTGCAACGCCAAG
Found at i:34659565 original size:194 final size:196
Alignment explanation
Indices: 34659211--34659808 Score: 745
Period size: 194 Copynumber: 3.1 Consensus size: 196
34659201 TGACGTCATT
* *
34659211 GAAATAAGATTCGCTGCCTTCAGCTTTAGTCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGC
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCCAGGAAATGAGATTCGC
* * * *
34659276 TGTCTTCAGCTTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTA
66 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTA
* * ** * * * *
34659336 GTCTGTTCCACTGCAACGCCAATGAAATGAGATTCGCTACCTTCAGCTTTAATC-T-ACTGCGAT
131 ATC---T--ACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTCACTGCAAC
* *
34659399 GCTAGG
191 GCCAAG
*
34659405 GAAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCCAGGAAATGAGATTCGC
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCCAGGAAATGAGATTCGC
*
34659470 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCATCTTTA
66 TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTA
34659535 ATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGC
131 ATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATC--TT-CACTGCAACGC
34659600 CAAG
193 CAAG
* * * *
34659604 GAAATGAGATTCGTTGCCTTCAGCTTTAATC---T--ACTGCGACG-CCAGGGAAATAAGATTCG
1 GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCCA-GGAAATGAGATTCG
* *
34659663 CTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGTTGCCTTCAGCTTT
65 CTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTT
* * *
34659728 AATCTACTGCGACGCCAGGGAAATAAGATTTGCTGCCTTCAGCTTTAATTTGTTTCACTGTAACG
130 AATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAA--T-CTTCACTGCAACG
34659793 CCAAG
192 CCAAG
*
34659798 GAAATGAGATT
1 GAAATAAGATT
34659809 GTTGTCTTCA
Statistics
Matches: 361, Mismatches: 29, Indels: 28
0.86 0.07 0.07
Matches are distributed among these distances:
193 3 0.01
194 273 0.76
195 2 0.01
196 3 0.01
197 2 0.01
199 78 0.22
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (196 bp):
GAAATAAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCCAGGAAATGAGATTCGC
TGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGCTGCCTTCAGCTTTA
ATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTTCACTGCAACGCCAA
G
Found at i:34659653 original size:245 final size:245
Alignment explanation
Indices: 34659211--34659776 Score: 935
Period size: 245 Copynumber: 2.3 Consensus size: 245
34659201 TGACGTCATT
* *
34659211 GAAATAAGATTCGCTGCCTTCAGCTTTAGTCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGC
1 GAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGC
* *
34659276 TGTCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAGTCTG
66 TGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
* * *
34659341 TTCCACTGCAACGCCAATGAAATGAGATTCGCTACCTTCAGCTTTAATCTACTGCGATGCTAGGG
131 TTCCACTGCAACGCCAAGGAAATGAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCAGGG
*
34659406 AAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCCAG
196 AAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG
34659456 GAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGC
1 GAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGC
*
34659521 TGCCTTCATCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
66 TGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
* *
34659586 TTCCACTGCAACGCCAAGGAAATGAGATTCGTTGCCTTCAGCTTTAATCTACTGCGACGCCAGGG
131 TTCCACTGCAACGCCAAGGAAATGAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCAGGG
* *
34659651 AAATAAGATTCGCTGCTTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG
196 AAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG
* * * * *
34659701 GAAATGAGATTCGTTGCCTTCAGCTTTAATC---T--ACTGCGACGCCAGGGAAATAAGATTTGC
1 GAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGC
34659761 TGCCTTCAGCTTTAAT
66 TGCCTTCAGCTTTAAT
34659777 TTGTTTCACT
Statistics
Matches: 302, Mismatches: 19, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
240 39 0.13
242 1 0.00
245 262 0.87
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (245 bp):
GAAATGAGATTCGCTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAGGAAATGAGATTCGC
TGCCTTCAGCTTTAATCTACTGCGACGCCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTG
TTCCACTGCAACGCCAAGGAAATGAGATTCGCTACCTTCAGCTTTAATCTACTGCGACGCCAGGG
AAATAAGATTCACTGCCTTCAGCTTTAATCTGTTCCACTGCAACGCCAAG
Found at i:34660173 original size:24 final size:24
Alignment explanation
Indices: 34660116--34660176 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
34660106 CAGAGTGCCC
* *
34660116 CCACTGTAATCTTCAAGGCTCAAT
1 CCACTATAATTTTCAAGGCTCAAT
*
34660140 CCAC-AGTAATTTTCAAGGTTCAAT
1 CCACTA-TAATTTTCAAGGCTCAAT
34660164 CCACTATAATTTT
1 CCACTATAATTTT
34660177 GGGACATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 31 0.97
25 1 0.03
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (24 bp):
CCACTATAATTTTCAAGGCTCAAT
Found at i:34661157 original size:7 final size:8
Alignment explanation
Indices: 34661131--34661166 Score: 54
Period size: 8 Copynumber: 4.2 Consensus size: 8
34661121 CCATTTTTAC
34661131 TTTTACTTT
1 TTTTA-TTT
34661140 TTTCTATTT
1 TTT-TATTT
34661149 TTTTATTT
1 TTTTATTT
34661157 TTTTATTT
1 TTTTATTT
34661165 TT
1 TT
34661167 ACGACTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 15 0.58
9 9 0.35
10 2 0.08
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTATTT
Found at i:34675871 original size:150 final size:148
Alignment explanation
Indices: 34675601--34675891 Score: 377
Period size: 150 Copynumber: 1.9 Consensus size: 148
34675591 GATAATAACA
* * *
34675601 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTCTGTACTGCCAATTCCATATCC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTTATCTG-ACTGCCAATGCCATATCC
* ** * * **
34675666 CAAATATAGTCTTACATGGGAGTTCTCATATCAGTGCCCATGCCATGTCTTAGACATGGTCTTAC
65 CAAACATAGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCCCAGACATGGTCTTAC
*
34675731 GGGGGACCTCTCATCTCGG
130 AGGGGACCTCTCATCTCGG
* * *
34675750 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCG-GTGCCAATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA--TCTTATCT-GACTGCCAATGCCATAT
* * *
34675814 CCCAGACATGGTCTTACATGGGACCTCTTATATCAGTGCCAACGCCATGTCCCAGACATGGTCTT
63 CCCAAACATAGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCCCAGACATGGTCTT
*
34675879 ACATGGGACCTCT
128 ACAGGGGACCTCT
34675892 TTACCCAAAT
Statistics
Matches: 121, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
149 36 0.30
150 78 0.64
151 6 0.05
152 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (148 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCTTATCTGACTGCCAATGCCATATCCC
AAACATAGTCTTACATGGGACCTCTCATATCAGTGCCAACGCCATGTCCCAGACATGGTCTTACA
GGGGACCTCTCATCTCGG
Done.