Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 117 of 211
Found at i:36916410 original size:29 final size:27
Alignment explanation
Indices: 36916349--36916410 Score: 63
Period size: 29 Copynumber: 2.2 Consensus size: 27
36916339 ATACAAACGA
* *
36916349 AAATAATAATTTATTACATTTTAAACT
1 AAATAATAATTTATAACATTTTAAAAT
36916376 ATAATAATAAATTTA-AACATTATTAAAAAT
1 A-AATAAT-AATTTATAACATT-TT-AAAAT
36916406 AAATA
1 AAATA
36916411 TTACAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
27 1 0.03
28 11 0.38
29 12 0.41
30 5 0.17
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (27 bp):
AAATAATAATTTATAACATTTTAAAAT
Found at i:36917714 original size:27 final size:25
Alignment explanation
Indices: 36917684--36917742 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 25
36917674 AATGTTTCTG
36917684 TATTTTTGAACTTTTGGACTTTTAATT
1 TATTTTTGAACTTTTGGA-TTTT-ATT
* *
36917711 TATTTTT-AATTTTTTGATTTTATT
1 TATTTTTGAACTTTTGGATTTTATT
*
36917735 TGTTTTTG
1 TATTTTTG
36917743 TAAGGGCCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 9 0.32
25 4 0.14
26 8 0.29
27 7 0.25
ACGTcount: A:0.19, C:0.03, G:0.10, T:0.68
Consensus pattern (25 bp):
TATTTTTGAACTTTTGGATTTTATT
Found at i:36918089 original size:50 final size:50
Alignment explanation
Indices: 36918045--36918608 Score: 447
Period size: 50 Copynumber: 11.3 Consensus size: 50
36918035 ACTACACCGC
* *
36918045 CTGGGAAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAACTACAATGT
1 CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
* * * * * * ** **
36918095 CGGGGAAGCAAGATTCACCGTTGTGGCGTTAATC--TTCCACTGCACCGT
1 CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
* * *
36918143 TTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATATTTTTAACTGCAATGT
1 CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
* * * * * * ** **
36918193 CGGGGAAGCAAGATTCGCCGTTGTGGCCTTAATCTGTTCCACTGCACCG-
1 CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
* *
36918242 CTTGAGAAGTAAGATTCGTTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
1 C-TGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
** * ** * * ** *
36918293 CTGGGAACCAAGGTTCGCCATTGTGGCTTTAATCTGTTCCACTGCACTG-
1 CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
* *
36918342 CTAGGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAATTGCAATGT
1 CT-GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
* * * * * * ** ** **
36918393 CGGGGAAGCAAGATTCACTGATGTGGCTTTAATCTGTTCCACT-CCGTCAC
1 CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAT-GT
* *
36918443 CTGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAATTGCAATGT
1 CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
* * * * * * ** ** *
36918493 C-GGGAAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGC
1 CTGGG-AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
*
36918543 CTGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
1 CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
* *
36918593 CGGGGAAGCAAGATTC
1 CTGGGAAGTAAGATTC
36918609 ACCAATATGG
Statistics
Matches: 375, Mismatches: 129, Indels: 20
0.72 0.25 0.04
Matches are distributed among these distances:
48 34 0.09
49 8 0.02
50 326 0.87
51 7 0.02
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (50 bp):
CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT
Found at i:36918110 original size:100 final size:100
Alignment explanation
Indices: 36918004--36918649 Score: 884
Period size: 100 Copynumber: 6.5 Consensus size: 100
36917994 TCGGAGAAAT
* * * * * *
36918004 AAGATTCACAGTTGTAGCTTCAATCGGTTCCACTACACCGCCTGGGAAGTAAGATTCGCTATTGT
1 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGT
*
36918069 AGCTTTAATCTTTTTAACTACAATGTCGGGGAAGC
66 AGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* ** *
36918104 AAGATTCACCGTTGTGGCGTTAATC--TTCCACTGCACCGTTTGAGAAGTAAGATTCGCTGTTGT
1 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGT
*
36918167 AGCTTTAATATTTTTAACTGCAATGTCGGGGAAGC
66 AGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * * *
36918202 AAGATTCGCCGTTGTGGCCTTAATCTGTTCCACTGCACCGCTTGAGAAGTAAGATTCGTTGTTGT
1 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGT
* *
36918267 AGCTTTAATCTTTTTAACTGCAATGTCTGGGAACC
66 AGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * * *
36918302 AAGGTTCGCCATTGTGGCTTTAATCTGTTCCACTGCACTG-CTAGGGAAATAAGATTCGCTGTTG
1 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT-GGGAAGTAAGATTCGCTGTTG
*
36918366 TAGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGC
65 TAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* * * ** * *
36918402 AAGATTCACTGATGTGGCTTTAATCTGTTCCACTCCGTCACCTGGGGAGTAAGATTCGCTGTTGT
1 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGT
* *
36918467 AGCTTTAATCTTTTTAATTGCAATGTCGGGAAAGC
66 AGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
* *
36918502 AAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGGAGTAAGATTCGCTGTTGT
1 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGT
36918567 AGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
66 AGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
** * * * *
36918602 AAGATTCACCAATATGGCTTTAATCTATTCCACAGCATCGCCTGGGAA
1 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAA
36918650 TTAAAATTGG
Statistics
Matches: 487, Mismatches: 55, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
98 89 0.18
99 1 0.00
100 395 0.81
101 2 0.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (100 bp):
AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGT
AGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
Found at i:36919945 original size:7 final size:7
Alignment explanation
Indices: 36919926--36919976 Score: 52
Period size: 7 Copynumber: 7.0 Consensus size: 7
36919916 TTAGCCTCTC
36919926 CATTTTT
1 CATTTTT
36919933 -ACTTTTT
1 CA-TTTTT
36919940 CATTTTT
1 CATTTTT
36919947 CA-TTTT
1 CATTTTT
36919953 CATTTTTTT
1 CA--TTTTT
36919962 CATTTTT
1 CATTTTT
36919969 CATATTTT
1 CAT-TTTT
36919977 TTTCTGACTT
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
6 7 0.18
7 20 0.53
8 5 0.13
9 6 0.16
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:36919952 original size:13 final size:14
Alignment explanation
Indices: 36919926--36919959 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
36919916 TTAGCCTCTC
*
36919926 CATTTTTACTTTTT
1 CATTTTTACATTTT
36919940 CATTTTT-CATTTT
1 CATTTTTACATTTT
36919953 CATTTTT
1 CATTTTT
36919960 TTCATTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (14 bp):
CATTTTTACATTTT
Found at i:36919960 original size:15 final size:17
Alignment explanation
Indices: 36919942--36919978 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
36919932 TACTTTTTCA
36919942 TTTTTCA-TTTTCAT-T
1 TTTTTCATTTTTCATAT
36919957 TTTTTCATTTTTCATAT
1 TTTTTCATTTTTCATAT
36919974 TTTTT
1 TTTTT
36919979 TCTGACTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 7 0.35
16 7 0.35
17 6 0.30
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTTCATTTTTCATAT
Found at i:36923078 original size:109 final size:109
Alignment explanation
Indices: 36922886--36923289 Score: 497
Period size: 109 Copynumber: 3.7 Consensus size: 109
36922876 TTTGAGCCAA
* * * * *
36922886 TGATACAAAACGTAGTGATGGCTGAGATCCAGCATATGTTGA-AGATTCTCTACAAG-TTGTATG
1 TGATACAGACCGTAGCGATGGCTGAGATCCTGCATATGTT-ACAGATTCTCTAC-AGCTTGTGTG
* * * * *
36922949 AGCAGCATCATGAGATGGTGATTATTTAGTAGGTGCTATGTACCGA
64 AGCAGCATCGTGAGACGGTGATTATTTAGCAGGTACTATGTACCGG
* * * * *
36922995 TGATACAGGCCATAGCAATGGCTGAGATCCTGCATATATTACGGATTCTCTACAGCTTGTGTGAG
1 TGATACAGACCGTAGCGATGGCTGAGATCCTGCATATGTTACAGATTCTCTACAGCTTGTGTGAG
*
36923060 CAGCATCGTGAGACGGTGATTATTTAGCAGGTACTATGTACAGG
66 CAGCATCGTGAGACGGTGATTATTTAGCAGGTACTATGTACCGG
* * * ** * ** * * * *
36923104 TGATATAAACTGTATTGATGGTTGAGATATTGTATATGTTGCGGGTTCTCTACAGCTTGTGTGAG
1 TGATACAGACCGTAGCGATGGCTGAGATCCTGCATATGTTACAGATTCTCTACAGCTTGTGTGAG
*
36923169 CAGCATCGGGAGACGGTGATTATTTAGCAGGTACTATGTACCGG
66 CAGCATCGTGAGACGGTGATTATTTAGCAGGTACTATGTACCGG
* *
36923213 TGATACAGACCGTAGCGATGGCTGAGATCCTGCATATGTTGCAGATTCTCTGCAGCTTGTGTGAG
1 TGATACAGACCGTAGCGATGGCTGAGATCCTGCATATGTTACAGATTCTCTACAGCTTGTGTGAG
36923278 CAGCATCGTGAG
66 CAGCATCGTGAG
36923290 CTGGTCAAAA
Statistics
Matches: 247, Mismatches: 46, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
108 3 0.01
109 244 0.99
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (109 bp):
TGATACAGACCGTAGCGATGGCTGAGATCCTGCATATGTTACAGATTCTCTACAGCTTGTGTGAG
CAGCATCGTGAGACGGTGATTATTTAGCAGGTACTATGTACCGG
Found at i:36924800 original size:21 final size:21
Alignment explanation
Indices: 36924776--36924852 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
36924766 TGAGGGGTAT
36924776 ACACGCCCATGTGAAGGAGGC
1 ACACGCCCATGTGAAGGAGGC
* * *
36924797 ACACGCCCGTGCGAA-GAAGC
1 ACACGCCCATGTGAAGGAGGC
*
36924817 ACACGCCCATGTAAAAGGAGGC
1 ACACGCCCATGT-GAAGGAGGC
* *
36924839 ACACGGCCTTGTGA
1 ACACGCCCATGTGA
36924853 CTATGACACA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
20 14 0.32
21 16 0.36
22 14 0.32
ACGTcount: A:0.30, C:0.30, G:0.30, T:0.10
Consensus pattern (21 bp):
ACACGCCCATGTGAAGGAGGC
Found at i:36924820 original size:20 final size:21
Alignment explanation
Indices: 36924776--36924827 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
36924766 TGAGGGGTAT
* *
36924776 ACACGCCCATGTGAAGGAGGC
1 ACACGCCCATGCGAAGGAAGC
*
36924797 ACACGCCCGTGCGAA-GAAGC
1 ACACGCCCATGCGAAGGAAGC
36924817 ACACGCCCATG
1 ACACGCCCATG
36924828 TAAAAGGAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.29, C:0.35, G:0.29, T:0.08
Consensus pattern (21 bp):
ACACGCCCATGCGAAGGAAGC
Found at i:36941737 original size:7 final size:7
Alignment explanation
Indices: 36941725--36941751 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
36941715 GATCACTACA
36941725 ATCAACT
1 ATCAACT
36941732 ATCAACT
1 ATCAACT
36941739 ATCAACT
1 ATCAACT
36941746 ATCAAC
1 ATCAAC
36941752 CAATTGCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.26
Consensus pattern (7 bp):
ATCAACT
Found at i:36947198 original size:24 final size:24
Alignment explanation
Indices: 36947168--36947229 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
36947158 AGTAGAAGAC
36947168 GCTCCAAAAGCTGGAGTGCTAGAT
1 GCTCCAAAAGCTGGAGTGCTAGAT
* * *
36947192 G-TGCCAAAAGCAGGTGTGCTTGAT
1 GCT-CCAAAAGCTGGAGTGCTAGAT
*
36947216 GCTCCAAATGCTGG
1 GCTCCAAAAGCTGG
36947230 GGCATTAGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
23 1 0.03
24 29 0.94
25 1 0.03
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.23
Consensus pattern (24 bp):
GCTCCAAAAGCTGGAGTGCTAGAT
Found at i:36947314 original size:24 final size:24
Alignment explanation
Indices: 36947284--36947462 Score: 254
Period size: 24 Copynumber: 7.5 Consensus size: 24
36947274 TTCCAGTTGA
* *
36947284 ACCAAAGGCAGGGCTGCTTGTGGA
1 ACCAAAGGCAGGGGTGCTTGTGGC
* * *
36947308 ACCAAAGGCTGGGGTACTAGTGGC
1 ACCAAAGGCAGGGGTGCTTGTGGC
36947332 ACCGAAA-GCAGGGGTGCTTGTGGC
1 ACC-AAAGGCAGGGGTGCTTGTGGC
36947356 ACCGAAA-GCAGGGGTGCTTGTGGC
1 ACC-AAAGGCAGGGGTGCTTGTGGC
*
36947380 ACCAAAGGCAGGGGTGCTGGTGGC
1 ACCAAAGGCAGGGGTGCTTGTGGC
36947404 ACCAAAGGCAGGGGTGCTTGTGGC
1 ACCAAAGGCAGGGGTGCTTGTGGC
*
36947428 ACCAAACGCAGGGGTGCTTGTGGC
1 ACCAAAGGCAGGGGTGCTTGTGGC
*
36947452 ACCAAATGCAG
1 ACCAAAGGCAG
36947463 ACTGTGTTGA
Statistics
Matches: 141, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
23 3 0.02
24 135 0.96
25 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.39, T:0.16
Consensus pattern (24 bp):
ACCAAAGGCAGGGGTGCTTGTGGC
Found at i:36954701 original size:25 final size:25
Alignment explanation
Indices: 36954673--36954722 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
36954663 TTAAGGTTTA
* * *
36954673 AAGTTTTATAGATTTTTTATTTTTT
1 AAGTTATATAGATTTTATAATTTTT
*
36954698 AAGTTATATATATTTTATAATTTTT
1 AAGTTATATAGATTTTATAATTTTT
36954723 GAGATGCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (25 bp):
AAGTTATATAGATTTTATAATTTTT
Found at i:36957410 original size:45 final size:45
Alignment explanation
Indices: 36957337--36957552 Score: 189
Period size: 46 Copynumber: 4.8 Consensus size: 45
36957327 ATGGTTGAAA
* * *
36957337 GATGCCATGGTGTCTTTCAACCATGGTCTTAATCATACCCGACTT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATACCCAACTT
* * * * *
36957382 GATTCGATAGTGTCTTTCAACCATGGTCTTCTTCATTCCCAATTT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATACCCAACTT
*** ** *
36957427 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTACGTCGT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCA-TACCCAACTT
* * * * ** ** *
36957473 GTTGCCATAGTGTCTTTCAGCTATGGTCTTATTTATTTTCCGTCGT
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTCA-TACCCAACTT
* *
36957519 GTTGCCATAGTGTCTTTCAACTATGGTCTTATTC
1 GATGCCATAGTGTCTTTCAACCATGGTCTTATTC
36957553 GTTTGAGTCG
Statistics
Matches: 146, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
45 69 0.47
46 77 0.53
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.42
Consensus pattern (45 bp):
GATGCCATAGTGTCTTTCAACCATGGTCTTATTCATACCCAACTT
Found at i:36957499 original size:46 final size:46
Alignment explanation
Indices: 36957429--36957596 Score: 230
Period size: 46 Copynumber: 3.7 Consensus size: 46
36957419 CCCAATTTGA
*
36957429 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTACGTCGTGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTACGTCGTGT
* * *
36957475 TGCCATAGTGTCTTTCAGCTATGGTCTTATTTATTTTCCGTCGTGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTACGTCGTGT
* * **
36957521 TGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGA-GTCGTAA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTACGTCGTGT
* * *
36957566 TGCCGTAGCGTCTTTCAGCTATGGTCTTATT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATT
36957597 TGATAGAATC
Statistics
Matches: 108, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 33 0.31
46 75 0.69
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.44
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTACGTCGTGT
Found at i:36957579 original size:91 final size:92
Alignment explanation
Indices: 36957429--36957597 Score: 268
Period size: 91 Copynumber: 1.8 Consensus size: 92
36957419 CCCAATTTGA
* ** *
36957429 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTACGTCGTGTTGCCATAGTGTCTTTCAGC
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTGACGTCGTAATGCCATAGCGTCTTTCAGC
36957494 TATGGTCTTATTTATTTTCCGTCGTGT
66 TATGGTCTTATTTATTTTCCGTCGTGT
* * *
36957521 TGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGA-GTCGTAATGCCGTAGCGTCTTTCAGC
1 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTGACGTCGTAATGCCATAGCGTCTTTCAGC
36957585 TATGGTCTTATTT
66 TATGGTCTTATTT
36957598 GATAGAATCG
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 35 0.50
92 35 0.50
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.44
Consensus pattern (92 bp):
TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTGACGTCGTAATGCCATAGCGTCTTTCAGC
TATGGTCTTATTTATTTTCCGTCGTGT
Found at i:36957581 original size:45 final size:45
Alignment explanation
Indices: 36957426--36957680 Score: 219
Period size: 45 Copynumber: 5.6 Consensus size: 45
36957416 ATTCCCAATT
* * *
36957426 TGATGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTACGTCG
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGA-GTCG
* * ** **
36957472 TGTTGCCATAGTGTCTTTCAGCTATGGTCTTATTTATTTTCCGTCG
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTA-TTCGTTTGAGTCG
*
36957518 TGTTGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGAGTCG
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGAGTCG
* * * * * * * *
36957563 TAATGCCGTAGCGTCTTTCAGCTATGGTCTTATTTGATAGAATCG
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGAGTCG
* ** * * * *
36957608 TGATGCCACAACGTCTTTCAGCTATTGTCTTACTCGCTTCT-AGT-A
1 TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCG-TT-TGAGTCG
36957653 T-AGTGCCATAGTGTCTTTCAACTATGGT
1 TGA-TGCCATAGTGTCTTTCAACTATGGT
36957681 ATTAATAATT
Statistics
Matches: 168, Mismatches: 37, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
44 1 0.01
45 95 0.57
46 67 0.40
47 5 0.03
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.42
Consensus pattern (45 bp):
TGATGCCATAGTGTCTTTCAACTATGGTCTTATTCGTTTGAGTCG
Found at i:36957669 original size:90 final size:90
Alignment explanation
Indices: 36957388--36957680 Score: 216
Period size: 91 Copynumber: 3.2 Consensus size: 90
36957378 ACTTGATTCG
* * * * * * * ** *
36957388 ATAGTGTCTTTCAACCATGGTCTTCTTCATTCCCAAT-TTGATGCCATAGTGTCTTTCAACCATG
1 ATAGTGTCTTTCAGCTATGGTCTTATTTATT-ACAATCGTGATGCCACAACGTCTTTCAACTATG
* * * * **
36957452 GTCTTATTCATTTTACGTCGTGTTGCC
65 GTCTTACTCGTTTGA-GTCATAATGCC
* ** * * **
36957479 ATAGTGTCTTTCAGCTATGGTCTTATTTATTTTCCGTCGTGTTGCCATAGTGTCTTTCAACTATG
1 ATAGTGTCTTTCAGCTATGGTCTTATTTA-TTACAATCGTGATGCCACAACGTCTTTCAACTATG
* *
36957544 GTCTTATTCGTTTGAGTCGTAATGCC
65 GTCTTACTCGTTTGAGTCATAATGCC
* * * * *
36957570 GTAGCGTCTTTCAGCTATGGTCTTATTTGA-TAGAATCGTGATGCCACAACGTCTTTCAGCTATT
1 ATAGTGTCTTTCAGCTATGGTCTTATTT-ATTACAATCGTGATGCCACAACGTCTTTCAACTATG
*
36957634 GTCTTACTCGCTTCT-AGT-ATAGTGCC
65 GTCTTACTCG-TT-TGAGTCATAATGCC
*
36957660 ATAGTGTCTTTCAACTATGGT
1 ATAGTGTCTTTCAGCTATGGT
36957681 ATTAATAATT
Statistics
Matches: 165, Mismatches: 32, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
90 57 0.35
91 67 0.41
92 41 0.25
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.42
Consensus pattern (90 bp):
ATAGTGTCTTTCAGCTATGGTCTTATTTATTACAATCGTGATGCCACAACGTCTTTCAACTATGG
TCTTACTCGTTTGAGTCATAATGCC
Found at i:36968664 original size:41 final size:40
Alignment explanation
Indices: 36968633--36968709 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
36968623 CGGCGTTTGG
* *
36968633 ACAAAAAACGCCGCTAAAAATCGAGCATTAGCGGCGCATC
1 ACAAAAAACGCCACTAAAAATCAAGCATTAGCGGCGCATC
* *
36968673 ACATAAAACGCCACTAAAGATCAAGCATTAGCGGCGC
1 ACAAAAAACGCCACTAAAAATCAAGCATTAGCGGCGC
36968710 TTTCAGGAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.40, C:0.27, G:0.19, T:0.13
Consensus pattern (40 bp):
ACAAAAAACGCCACTAAAAATCAAGCATTAGCGGCGCATC
Found at i:36969043 original size:106 final size:108
Alignment explanation
Indices: 36968836--36969063 Score: 318
Period size: 106 Copynumber: 2.1 Consensus size: 108
36968826 AGGTAAGCAA
36968836 TAGCGGCGTTTTTATAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAAAATAGCACCCTTTT
1 TAGCGGCGTTTTTATAAAAAACGCCACAAAAAATAATTTTAC-TTAAAAAAAATAGCACCCTTTT
* * *
36968901 AAAATAGCAAAACAGTGTCGTTTTATACCAAATGAAATAATTTT
65 AAAACAGCAAAACAATGTCATTTTATACCAAATGAAATAATTTT
* * *
36968945 TTGCGGCGTTTTTATGAAAAACGCCACAAAACAA-AATTTTAC-T-AAAAAAATAGCACCTTTTT
1 TAGCGGCGTTTTTATAAAAAACGCCACAAAA-AATAATTTTACTTAAAAAAAATAGCACCCTTTT
** * *
36969007 ATCACAGCAAAATAATGTCATTTTATTCCAAATGAAATAATTTT
65 AAAACAGCAAAACAATGTCATTTTATACCAAATGAAATAATTTT
*
36969051 TAGTGGCGTTTTT
1 TAGCGGCGTTTTT
36969064 TACTTCTTAG
Statistics
Matches: 106, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
106 66 0.62
107 1 0.01
109 37 0.35
110 2 0.02
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (108 bp):
TAGCGGCGTTTTTATAAAAAACGCCACAAAAAATAATTTTACTTAAAAAAAATAGCACCCTTTTA
AAACAGCAAAACAATGTCATTTTATACCAAATGAAATAATTTT
Found at i:36970395 original size:19 final size:19
Alignment explanation
Indices: 36970371--36970417 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
36970361 ATGGAATCTG
36970371 TTATAAATTAGAATGCCTA
1 TTATAAATTAGAATGCCTA
*
36970390 TTATAAACTAGAATGCCTA
1 TTATAAATTAGAATGCCTA
36970409 TTATAAATT
1 TTATAAATT
36970418 TTGGTTTCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.38
Consensus pattern (19 bp):
TTATAAATTAGAATGCCTA
Found at i:36970840 original size:8 final size:8
Alignment explanation
Indices: 36970827--36970851 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
36970817 TATATCCCCT
36970827 TGGTTAAA
1 TGGTTAAA
36970835 TGGTTAAA
1 TGGTTAAA
36970843 TGGTTAAA
1 TGGTTAAA
36970851 T
1 T
36970852 TTTTTTCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (8 bp):
TGGTTAAA
Found at i:36973692 original size:43 final size:42
Alignment explanation
Indices: 36973584--36973817 Score: 227
Period size: 43 Copynumber: 5.5 Consensus size: 42
36973574 ATAATTTTTT
* * * * ** * *
36973584 TAAAGGTTATATTTTTAGCGGTGTTTTTGTTAGAAGCGTCGC
1 TAAAGGTCATATCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
*
36973626 TAAAGGT-TTAATCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
1 TAAAGGTCAT-ATCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
* * * *
36973668 TAAAGATCATATTCTTTAGCGGCGTTTGTGGCTAAAGCGTCGC
1 TAAAGGTCATA-TCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
* * * *
36973711 TAAAGCTCACGATCTTTAGCGGCGTTTGTGAAAAAAGCACCGC
1 TAAAGGTCA-TATCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
* * * *
36973754 TAAAGGTCATGTTCTTTAGCAGCGTTTGTTATAAAAGCGCCGC
1 TAAAGGTCAT-ATCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
36973797 TAAAGGTCATCATCTTTAGCG
1 TAAAGGTCAT-ATCTTTAGCG
36973818 ACGGTTTTCC
Statistics
Matches: 157, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 39 0.25
43 116 0.74
44 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
TAAAGGTCATATCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
Found at i:36973747 original size:86 final size:86
Alignment explanation
Indices: 36973636--36973817 Score: 251
Period size: 86 Copynumber: 2.1 Consensus size: 86
36973626 TAAAGGTTTA
* * * *
36973636 ATCTTTAGCGGCGTTTGTGACAAAAGCGCCGCTAAAGATCATATTCTTTAGCGGCGTTTGTGGCT
1 ATCTTTAGCGGCGTTTGTGAAAAAAGCACCGCTAAAGATCATATTCTTTAGCAGCGTTTGT-GAT
*
36973701 -AAAGCGTCGCTAAAGCTCA-C
65 AAAAGCGCCGCTAAAGCTCATC
* * *
36973721 GATCTTTAGCGGCGTTTGTGAAAAAAGCACCGCTAAAGGTCATGTTCTTTAGCAGCGTTTGTTAT
1 -ATCTTTAGCGGCGTTTGTGAAAAAAGCACCGCTAAAGATCATATTCTTTAGCAGCGTTTGTGAT
*
36973786 AAAAGCGCCGCTAAAGGTCATC
65 AAAAGCGCCGCTAAAGCTCATC
36973808 ATCTTTAGCG
1 ATCTTTAGCG
36973818 ACGGTTTTCC
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
85 1 0.01
86 83 0.98
87 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (86 bp):
ATCTTTAGCGGCGTTTGTGAAAAAAGCACCGCTAAAGATCATATTCTTTAGCAGCGTTTGTGATA
AAAGCGCCGCTAAAGCTCATC
Found at i:36974960 original size:41 final size:41
Alignment explanation
Indices: 36974932--36975096 Score: 267
Period size: 41 Copynumber: 4.0 Consensus size: 41
36974922 GTTTAAAGTT
*
36974932 TAATTCAGTTCACTGGCACTTAGCCTGCTAGGCTTATAGCC
1 TAATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCC
* * *
36974973 TGATTCAGTTCAACGACACTTAGCCTGCTAGGCTTATAGCC
1 TAATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCC
* * *
36975014 TGATTTAATTCACCGGCACTTAGCCTGCTAGGCTTATAGCC
1 TAATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCC
36975055 TAATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCC
1 TAATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCC
36975096 T
1 T
36975097 GAATAATTTC
Statistics
Matches: 113, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 113 1.00
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.31
Consensus pattern (41 bp):
TAATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCC
Found at i:36980081 original size:42 final size:42
Alignment explanation
Indices: 36980022--36980106 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
36980012 ACATCAAATC
36980022 AGCCGTAAAACACAAATCTCGAATCATCAACGGACAATTCTT
1 AGCCGTAAAACACAAATCTCGAATCATCAACGGACAATTCTT
36980064 AGCCGTAAAACACAAATCTCGAATCATCAACGGACAATTCTT
1 AGCCGTAAAACACAAATCTCGAATCATCAACGGACAATTCTT
36980106 A
1 A
36980107 CACACTTTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.41, C:0.26, G:0.12, T:0.21
Consensus pattern (42 bp):
AGCCGTAAAACACAAATCTCGAATCATCAACGGACAATTCTT
Found at i:36982551 original size:41 final size:41
Alignment explanation
Indices: 36982506--36982687 Score: 292
Period size: 41 Copynumber: 4.4 Consensus size: 41
36982496 AGCACTTCAT
* * * *
36982506 CTGCTAGGTTTAAAGTCTAATTCAGTTCACTGGCACTTAGC
1 CTGCTAGGCTTATAGCCTAATTCAGTTCACCGGCACTTAGC
* *
36982547 CTGCTAGGCTTATAGCCTGATTCAGTTCAACGGCACTTAGC
1 CTGCTAGGCTTATAGCCTAATTCAGTTCACCGGCACTTAGC
* *
36982588 CTGCTAGGCTTATAGCCTGATTCAATTCACCGGCACTTAGC
1 CTGCTAGGCTTATAGCCTAATTCAGTTCACCGGCACTTAGC
36982629 CTGCTAGGCTTATAGCCTAATTCAGTTCACCGGCACTTAGC
1 CTGCTAGGCTTATAGCCTAATTCAGTTCACCGGCACTTAGC
36982670 CTGCTAGGCTTATAGCCT
1 CTGCTAGGCTTATAGCCT
36982688 GAATAATTTC
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 131 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (41 bp):
CTGCTAGGCTTATAGCCTAATTCAGTTCACCGGCACTTAGC
Found at i:36986394 original size:39 final size:39
Alignment explanation
Indices: 36986339--36986479 Score: 201
Period size: 39 Copynumber: 3.6 Consensus size: 39
36986329 AACATGTTTT
*
36986339 TGAGTATTGTGGTATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *** *
36986378 TGAGTATTGTGATATATGCTTGAGCATTATGTGGTTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
36986417 TGAGTATTATGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
36986456 TGTGTAATGTGATATATGCTTAAA
1 TGAGTATTGTGATATATGCTTAAA
36986480 AGTGAATATG
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 87 1.00
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:36997874 original size:15 final size:16
Alignment explanation
Indices: 36997854--36997890 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
36997844 GGAGATAAAT
36997854 ATAAATACTTAA-AAA
1 ATAAATACTTAAGAAA
36997869 ATAAATACTTAAGAAA
1 ATAAATACTTAAGAAA
*
36997885 AGAAAT
1 ATAAAT
36997891 TTCCCCCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.24
Consensus pattern (16 bp):
ATAAATACTTAAGAAA
Found at i:36998120 original size:12 final size:12
Alignment explanation
Indices: 36998100--36998149 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
36998090 ACCCTCTTAT
*
36998100 TGAACATAAAAA
1 TGAAAATAAAAA
* *
36998112 TAAAAATAAAAT
1 TGAAAATAAAAA
*
36998124 TGGAAATAAAAA
1 TGAAAATAAAAA
36998136 TGAAAATGAAAAA
1 TGAAAAT-AAAAA
36998149 T
1 T
36998150 TTCTTTTGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 24 0.80
13 6 0.20
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (12 bp):
TGAAAATAAAAA
Found at i:37008513 original size:20 final size:20
Alignment explanation
Indices: 37008440--37008514 Score: 55
Period size: 20 Copynumber: 3.6 Consensus size: 20
37008430 TGACAGGCAT
*
37008440 ACACGACCGTGTAAAGGAGGG
1 ACAC-ACCGTGTGAAGGAGGG
* * * *
37008461 ACACACCATGTCACA-GATGC
1 ACACACCGTGTGA-AGGAGGG
37008481 ACAC-CTTCGTGTGAAGGAGGG
1 ACACAC--CGTGTGAAGGAGGG
37008502 ACACACCGTGTGA
1 ACACACCGTGTGA
37008515 CAAAGGCACA
Statistics
Matches: 41, Mismatches: 8, Indels: 11
0.68 0.13 0.18
Matches are distributed among these distances:
19 1 0.02
20 22 0.54
21 17 0.41
22 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.29, T:0.15
Consensus pattern (20 bp):
ACACACCGTGTGAAGGAGGG
Found at i:37008524 original size:41 final size:41
Alignment explanation
Indices: 37008446--37008534 Score: 115
Period size: 41 Copynumber: 2.2 Consensus size: 41
37008436 GCATACACGA
* * *
37008446 CCGTGTAAAGGAGGGACACACCATGTCACAGATGCACACCT
1 CCGTGTGAAGGAGGGACACACCATGTCACAAAGGCACACCT
* * * *
37008487 TCGTGTGAAGGAGGGACACACCGTGTGACAAAGGCACACGT
1 CCGTGTGAAGGAGGGACACACCATGTCACAAAGGCACACCT
37008528 CCGTGTG
1 CCGTGTG
37008535 GCTAAGACAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.28, C:0.26, G:0.30, T:0.16
Consensus pattern (41 bp):
CCGTGTGAAGGAGGGACACACCATGTCACAAAGGCACACCT
Found at i:37008692 original size:21 final size:21
Alignment explanation
Indices: 37008668--37008718 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
37008658 ATGACACAAC
*
37008668 TGTGTGAAAGAGGCACATGAT
1 TGTGTGAAAGAAGCACATGAT
** *
37008689 TGTGTGACTGAAGCACATGCT
1 TGTGTGAAAGAAGCACATGAT
37008710 TGTGTGAAA
1 TGTGTGAAA
37008719 AATGAAAATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.27
Consensus pattern (21 bp):
TGTGTGAAAGAAGCACATGAT
Found at i:37011226 original size:21 final size:21
Alignment explanation
Indices: 37011202--37011280 Score: 99
Period size: 21 Copynumber: 3.8 Consensus size: 21
37011192 TGACTGAATG
37011202 ACACG-TCTGTGTGAAAGAGGC
1 ACACGATC-GTGTGAAAGAGGC
37011223 ACACGATCGTGTGAAAGAGGC
1 ACACGATCGTGTGAAAGAGGC
** *
37011244 ACACGATCGTGTGATTGAAGC
1 ACACGATCGTGTGAAAGAGGC
37011265 ACAC-ATCCGTGTGAAA
1 ACACGAT-CGTGTGAAA
37011281 AATGTCATTT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
20 2 0.04
21 47 0.92
22 2 0.04
ACGTcount: A:0.32, C:0.20, G:0.29, T:0.19
Consensus pattern (21 bp):
ACACGATCGTGTGAAAGAGGC
Found at i:37023983 original size:15 final size:15
Alignment explanation
Indices: 37023963--37023991 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37023953 CAAAAAATAG
37023963 AGAGAATTTATTCTT
1 AGAGAATTTATTCTT
37023978 AGAGAATTTATTCT
1 AGAGAATTTATTCT
37023992 GTCGAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (15 bp):
AGAGAATTTATTCTT
Found at i:37024024 original size:104 final size:104
Alignment explanation
Indices: 37023896--37024084 Score: 342
Period size: 104 Copynumber: 1.8 Consensus size: 104
37023886 TTCTCTTCTT
37023896 ATAAATAAATGGCATCGGAAGGGCATAAAACACAACTTTGAGAGATTGTTACTCTGTCAAAAAAT
1 ATAAATAAATGGCATCGGAAGGGCATAAAACACAACTTTGAGAGATTGTTACTCTGTCAAAAAAT
*
37023961 AGAGAGAATTTATTCTTAGAGAATTTATTCTGTCGAAAA
66 AAAGAGAATTTATTCTTAGAGAATTTATTCTGTCGAAAA
* * *
37024000 ATAAATAGATGGCATTGGAAGGGCATAAAACACAACTTTGAGAGATTGTTACTCTGTCGAAAAAT
1 ATAAATAAATGGCATCGGAAGGGCATAAAACACAACTTTGAGAGATTGTTACTCTGTCAAAAAAT
37024065 AAAGAGAATTTATTCTTAGA
66 AAAGAGAATTTATTCTTAGA
37024085 TATTAAATAT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
104 81 1.00
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (104 bp):
ATAAATAAATGGCATCGGAAGGGCATAAAACACAACTTTGAGAGATTGTTACTCTGTCAAAAAAT
AAAGAGAATTTATTCTTAGAGAATTTATTCTGTCGAAAA
Found at i:37032367 original size:45 final size:46
Alignment explanation
Indices: 37032281--37032368 Score: 106
Period size: 45 Copynumber: 1.9 Consensus size: 46
37032271 AGAATGAATA
* * *
37032281 GAAATAGAGAAATGGAAAGCATTTAGAAATTATTATGGTTTTCTCT
1 GAAATAGAGAAATGGAAAGCATTTAGAAATGAATATAGTTTTCTCT
* * * *
37032327 GAAATGGAGAAATGG-AATCATTTGGAAATGAATGTAGTTTTC
1 GAAATAGAGAAATGGAAAGCATTTAGAAATGAATATAGTTTTC
37032369 CCAAAATGGA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
45 21 0.60
46 14 0.40
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.33
Consensus pattern (46 bp):
GAAATAGAGAAATGGAAAGCATTTAGAAATGAATATAGTTTTCTCT
Found at i:37032383 original size:6 final size:6
Alignment explanation
Indices: 37032372--37032407 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
37032362 AGTTTTCCCA
*
37032372 AAATGG AAATGG AAATGG AAATGA AAATGAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATG-G AAATG
37032408 ATTCGTTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:37037868 original size:25 final size:27
Alignment explanation
Indices: 37037833--37037895 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 27
37037823 CCAATATATA
*
37037833 TTTTTTGTTTTGA-GTAATTT-AA-TTT
1 TTTTTTCTTTT-ATGTAATTTGAACTTT
**
37037858 TTTTTTCTTTTATGTTCTTTGAACTTT
1 TTTTTTCTTTTATGTAATTTGAACTTT
37037885 TTTTTTCTTTT
1 TTTTTTCTTTT
37037896 TTTTCATTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 1 0.03
25 15 0.47
26 2 0.06
27 14 0.44
ACGTcount: A:0.13, C:0.06, G:0.08, T:0.73
Consensus pattern (27 bp):
TTTTTTCTTTTATGTAATTTGAACTTT
Found at i:37041753 original size:18 final size:19
Alignment explanation
Indices: 37041723--37041767 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
37041713 TATTCTTCAA
37041723 AATTTTATATAAAT-TTTGG
1 AATTTT-TATAAATATTTGG
*
37041742 AATTTTTATAAATATTTTG
1 AATTTTTATAAATATTTGG
37041761 AATTTTT
1 AATTTTT
37041768 TGTAATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (19 bp):
AATTTTTATAAATATTTGG
Found at i:37041768 original size:20 final size:19
Alignment explanation
Indices: 37041723--37041768 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
37041713 TATTCTTCAA
*
37041723 AATTTTATATAAATTTTGG
1 AATTTTTTATAAATTTTGG
*
37041742 AA-TTTTTATAAATATTTTG
1 AATTTTTTATAAAT-TTTGG
37041761 AATTTTTT
1 AATTTTTT
37041769 GTAATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 10 0.43
19 8 0.35
20 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
AATTTTTTATAAATTTTGG
Found at i:37042806 original size:77 final size:77
Alignment explanation
Indices: 37042679--37042833 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
37042669 CATGACTTCC
37042679 TTGCTCAATGCACTATGAAGCATGAAAACGGACACAGACACGTAATACTGGTACGACACAATACG
1 TTGCTCAATGCACTATGAAGCATGAAAACGGACACAGACACGTAATACTGGTACGACACAATACG
37042744 GACACGGTGACA
66 GACACGGTGACA
37042756 TTGCTCAATGCACTATGAAGCATGAAAACGGACACAGACACGTAATACTGGTACGACACAATACG
1 TTGCTCAATGCACTATGAAGCATGAAAACGGACACAGACACGTAATACTGGTACGACACAATACG
37042821 GACACGGTGACA
66 GACACGGTGACA
37042833 T
1 T
37042834 GGTAATTTTT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.17
Consensus pattern (77 bp):
TTGCTCAATGCACTATGAAGCATGAAAACGGACACAGACACGTAATACTGGTACGACACAATACG
GACACGGTGACA
Found at i:37042913 original size:11 final size:9
Alignment explanation
Indices: 37042884--37042910 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
37042874 CGGAAATAAA
37042884 AATATTTTT
1 AATATTTTT
37042893 AATATTTTT
1 AATATTTTT
37042902 AATATTTTT
1 AATATTTTT
37042911 TTATGTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
AATATTTTT
Found at i:37046909 original size:22 final size:22
Alignment explanation
Indices: 37046878--37046939 Score: 70
Period size: 25 Copynumber: 2.6 Consensus size: 22
37046868 ATTAAATTTG
37046878 TATATGATTATTTTAACTTGCTT
1 TATA-GATTATTTTAACTTGCTT
*
37046901 TATAGATTATTATTTTAAGTTGCTT
1 TATAG---ATTATTTTAACTTGCTT
*
37046926 TATATATTATTTTA
1 TATAGATTATTTTA
37046940 TTTGAAGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
22 10 0.29
23 4 0.12
25 20 0.59
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (22 bp):
TATAGATTATTTTAACTTGCTT
Found at i:37046948 original size:27 final size:25
Alignment explanation
Indices: 37046884--37046936 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
37046874 TTTGTATATG
*
37046884 ATTATTTTAACTTGCTTTATAGATT
1 ATTATTTTAAGTTGCTTTATAGATT
*
37046909 ATTATTTTAAGTTGCTTTATATATT
1 ATTATTTTAAGTTGCTTTATAGATT
37046934 ATT
1 ATT
37046937 TTATTTGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.28, C:0.06, G:0.08, T:0.58
Consensus pattern (25 bp):
ATTATTTTAAGTTGCTTTATAGATT
Found at i:37048369 original size:24 final size:24
Alignment explanation
Indices: 37048318--37048368 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
37048308 TTCATAGGTC
* *
37048318 AAATAAATTATGCTAATAAATGTA
1 AAATAAATTATACTAATAAATCTA
*
37048342 AAATATATTATACTAATAAATACTA
1 AAATAAATTATACTAATAAAT-CTA
37048367 AA
1 AA
37048369 TCTTCTAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATCTA
Found at i:37052488 original size:20 final size:18
Alignment explanation
Indices: 37052437--37052504 Score: 64
Period size: 19 Copynumber: 3.6 Consensus size: 18
37052427 TAACATTAAG
**
37052437 AAAAATATTATTTTCCTTT
1 AAAAATATTATTTT-AATT
37052456 AAAAATATTATTTTAATT
1 AAAAATATTATTTTAATT
* *
37052474 AAATAATATTTATTTTTATG
1 AAA-AATA-TTATTTTAATT
*
37052494 ATAAATATTAT
1 AAAAATATTAT
37052505 ATTATGTTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
18 9 0.21
19 22 0.52
20 11 0.26
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (18 bp):
AAAAATATTATTTTAATT
Found at i:37052514 original size:24 final size:22
Alignment explanation
Indices: 37052473--37052516 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
37052463 TTATTTTAAT
37052473 TAAATAATATTTATTTTTATGA
1 TAAATAATATTTATTTTTATGA
*
37052495 TAAATATTATATTATGTTTTAT
1 TAAATAATAT-TTAT-TTTTAT
37052517 TTTTGAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
TAAATAATATTTATTTTTATGA
Found at i:37054227 original size:9 final size:8
Alignment explanation
Indices: 37054213--37054237 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
37054203 ACCGAATGAT
37054213 AAAAAAAG
1 AAAAAAAG
37054221 AAAAAAAG
1 AAAAAAAG
37054229 AAAAAAAG
1 AAAAAAAG
37054237 A
1 A
37054238 TCTGTTGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:37054784 original size:18 final size:18
Alignment explanation
Indices: 37054758--37054794 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
37054748 AAATCGATGC
37054758 ATGCCAAAATCAAATCCG
1 ATGCCAAAATCAAATCCG
* *
37054776 ATGCTAAAATTAAATCCG
1 ATGCCAAAATCAAATCCG
37054794 A
1 A
37054795 ACAATAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.22, G:0.11, T:0.22
Consensus pattern (18 bp):
ATGCCAAAATCAAATCCG
Found at i:37055238 original size:14 final size:14
Alignment explanation
Indices: 37055221--37055247 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37055211 GTCGAATGAA
37055221 GATTTGGGGAATTT
1 GATTTGGGGAATTT
37055235 GATTTGGGGAATT
1 GATTTGGGGAATT
37055248 AGGGATTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (14 bp):
GATTTGGGGAATTT
Found at i:37055413 original size:40 final size:41
Alignment explanation
Indices: 37055358--37055454 Score: 133
Period size: 41 Copynumber: 2.4 Consensus size: 41
37055348 TAAAATTATA
* *
37055358 CTTTGCGGTGTTTTTCTCCT-AGCGCCGCTAATACTTGACC
1 CTTTGCGGTGTTTTTCTCATAAACGCCGCTAATACTTGACC
* * *
37055398 CTTTGCGGCGTTTTTCTCATAAACGCTGCTAATGCTTGACC
1 CTTTGCGGTGTTTTTCTCATAAACGCCGCTAATACTTGACC
*
37055439 TTTTGCGGTGTTTTTC
1 CTTTGCGGTGTTTTTC
37055455 CGTTAGTGCC
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 18 0.37
41 31 0.63
ACGTcount: A:0.12, C:0.26, G:0.21, T:0.41
Consensus pattern (41 bp):
CTTTGCGGTGTTTTTCTCATAAACGCCGCTAATACTTGACC
Found at i:37055470 original size:40 final size:40
Alignment explanation
Indices: 37055358--37055471 Score: 122
Period size: 41 Copynumber: 2.8 Consensus size: 40
37055348 TAAAATTATA
* *
37055358 CTTTGCGGTGTTTTTCTCCTAGCGCCGCTAATACTTGACC
1 CTTTGCGGTGTTTTTCTCTTAGCGCCGCTAATGCTTGACC
* * * *
37055398 CTTTGCGGCGTTTTTCTCATAAACGCTGCTAATGCTTGACC
1 CTTTGCGGTGTTTTTCTC-TTAGCGCCGCTAATGCTTGACC
* * *
37055439 TTTTGCGGTGTTTTTC-CGTTAGTGCCACTAATG
1 CTTTGCGGTGTTTTTCTC-TTAGCGCCGCTAATG
37055472 TATAATATTT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
40 28 0.47
41 31 0.53
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.39
Consensus pattern (40 bp):
CTTTGCGGTGTTTTTCTCTTAGCGCCGCTAATGCTTGACC
Found at i:37060960 original size:16 final size:15
Alignment explanation
Indices: 37060912--37060965 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
37060902 AAATAATTAG
* *
37060912 TTAATAATAGTAAAA
1 TTAATAATAATGAAA
* *
37060927 ATAATAATAATTAAA
1 TTAATAATAATGAAA
*
37060942 TTAAATAATAATGATA
1 TT-AATAATAATGAAA
37060958 TTAATAAT
1 TTAATAAT
37060966 TGGGGCATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
15 19 0.59
16 13 0.41
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (15 bp):
TTAATAATAATGAAA
Found at i:37064422 original size:21 final size:21
Alignment explanation
Indices: 37064382--37064425 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
37064372 TTTTGTTTTT
*
37064382 GAGTTTGGGGGAGTTCAAAAA
1 GAGTTTGGGGGACTTCAAAAA
37064403 GAGTATTGGGGGACTT-AAAAA
1 GAGT-TTGGGGGACTTCAAAAA
37064424 GA
1 GA
37064426 AATTTTATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.36, C:0.05, G:0.36, T:0.23
Consensus pattern (21 bp):
GAGTTTGGGGGACTTCAAAAA
Found at i:37065085 original size:18 final size:17
Alignment explanation
Indices: 37065044--37065077 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37065034 GTCATTCGTT
37065044 TTTA-AAATATTATTCA
1 TTTACAAATATTATTCA
37065060 TTTACAAATCATTATTCA
1 TTTACAAAT-ATTATTCA
37065078 ATTTCAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 4 0.25
18 8 0.50
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTACAAATATTATTCA
Found at i:37073182 original size:153 final size:154
Alignment explanation
Indices: 37072953--37073420 Score: 707
Period size: 152 Copynumber: 3.0 Consensus size: 154
37072943 TTTTTTTTTT
*
37072953 AAAAAGGAGAAAGTTTAGATTTTTAAAAATAAAAATATG-TTTTTTAGTCATTTTAAAGGCAAGT
1 AAAAA-GAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGT
* * * * *
37073017 TTAAATTTTTAAAACAAAGTTTTGATATTTTTTTTAAACTATTTTGAAATAAAAGCTTTGATCTT
65 TTAAATTTTTAAAATAAAGTTTTGAT-TTTTTTTTCAACTATTTCGAAATAAAAGCTTTAATATT
37073082 TAAGAAAAGTAGTGATTTTTTAAAAG
129 TAAGAAAAGTAGTGATTTTTTAAAAG
37073108 AAAAA-A-AAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGTT
1 AAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGTT
*
37073171 TAAAATTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCGAAATAAAAGCTTTAATATTTA
66 TAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCGAAATAAAAGCTTTAATATTTA
*
37073236 AGAAGAGTAGTGATTTTTTAAAAG
131 AGAAAAGTAGTGATTTTTTAAAAG
*
37073260 AAAAAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATATATTTTTTAGTCATTTTAAAGGA
1 ----AAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATGT-TTTTTTAGTCATTTTAAAGGA
*
37073325 AAGTTTAAATTTTTAAAATAAA-TTTT--TTGTTTTTTTCAACTATTTCGAAATAAAAGCTTTTA
61 AAGTTTAAATTTTTAAAATAAAGTTTTGATT-TTTTTTTCAACTATTTCGAAATAAAAGCTTTAA
* *
37073387 TTTTTAAGAAAAGTAGTGACTTTTT-AAAG
125 TATTTAAGAAAAGTAGTGATTTTTTAAAAG
37073416 AAAAA
1 AAAAA
37073421 TTTGATTTTA
Statistics
Matches: 290, Mismatches: 14, Indels: 21
0.89 0.04 0.06
Matches are distributed among these distances:
152 94 0.32
153 49 0.17
155 5 0.02
156 11 0.04
157 55 0.19
158 34 0.12
159 42 0.14
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (154 bp):
AAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGTT
TAAATTTTTAAAATAAAGTTTTGATTTTTTTTTCAACTATTTCGAAATAAAAGCTTTAATATTTA
AGAAAAGTAGTGATTTTTTAAAAG
Found at i:37073955 original size:38 final size:38
Alignment explanation
Indices: 37073901--37073973 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
37073891 ATTTGCATTC
37073901 ATACCTTATATATTTAATGTCAATTATGCACTTTATTT
1 ATACCTTATATATTTAATGTCAATTATGCACTTTATTT
* *
37073939 ATACCTTATATGTTTAATGTCAATTATGTACTTTA
1 ATACCTTATATATTTAATGTCAATTATGCACTTTA
37073974 CAATTTAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.32, C:0.12, G:0.07, T:0.49
Consensus pattern (38 bp):
ATACCTTATATATTTAATGTCAATTATGCACTTTATTT
Found at i:37075421 original size:23 final size:20
Alignment explanation
Indices: 37075395--37075444 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
37075385 GGTTTTTTAG
37075395 TATTTGTGCATATTAGATTTATT
1 TATTTGTGC--ATTA-ATTTATT
*
37075418 TATTCGTGCATTAATTTATT
1 TATTTGTGCATTAATTTATT
*
37075438 TAATTGT
1 TATTTGT
37075445 CTAATGTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 12 0.50
21 4 0.17
23 8 0.33
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (20 bp):
TATTTGTGCATTAATTTATT
Found at i:37082714 original size:4 final size:4
Alignment explanation
Indices: 37082699--37082747 Score: 62
Period size: 4 Copynumber: 12.2 Consensus size: 4
37082689 CCAATTTTAA
* * * *
37082699 TCAT TTAT TCAT TCAT TCAT CCAT CCAT CCAT TCAT TCAT TCAT TCAT
1 TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT
37082747 T
1 T
37082748 TGTTTATTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (4 bp):
TCAT
Found at i:37086028 original size:42 final size:42
Alignment explanation
Indices: 37085969--37086202 Score: 328
Period size: 42 Copynumber: 5.6 Consensus size: 42
37085959 GAAAGCATTT
* * **
37085969 ATTGCATTTAGAGGCCCAAGTGTGGAGGCCCATTTGCTTTTC
1 ATTGCATCTAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTC
*
37086011 ATTGCATCTAGAGGCCCAGGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATCTAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTC
*
37086053 ATTGCA-CTTAGAGGCCCAAGTGTGGAGGTCGATTCACTTTTC
1 ATTGCATC-TAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTC
* *
37086095 ATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTC
1 ATTGCATCTAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTC
* *
37086137 ATTGCATTTAGAGGTCCAAGTGTGGAGGTCCATTCACTTTTC
1 ATTGCATCTAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTC
* *
37086179 ATTGCA-CTTAGAGACCCAGGTGTG
1 ATTGCATC-TAGAGGCCCAAGTGTG
37086203 TTTCATTGCA
Statistics
Matches: 173, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
41 1 0.01
42 172 0.99
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (42 bp):
ATTGCATCTAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTC
Found at i:37086110 original size:84 final size:84
Alignment explanation
Indices: 37085969--37086202 Score: 369
Period size: 84 Copynumber: 2.8 Consensus size: 84
37085959 GAAAGCATTT
* ** *
37085969 ATTGCATTTAGAGGCCCAAGTGTGGAGGCCCATTTGCTTTTCATTGCATCTAGAGGCCCAGGTGT
1 ATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGGCCCAGGTGT
37086034 GGAGGTCCATTCACTTTTC
66 GGAGGTCCATTCACTTTTC
* * *
37086053 ATTGCACTTAGAGGCCCAAGTGTGGAGGTCGATTCACTTTTCATTGCATTTAGAGGCCCAAGTGT
1 ATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGGCCCAGGTGT
*
37086118 GGAGGTCCATTTACTTTTC
66 GGAGGTCCATTCACTTTTC
* * *
37086137 ATTGCATTTAGAGGTCCAAGTGTGGAGGTCCATTCACTTTTCATTGCACTTAGAGACCCAGGTGT
1 ATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGGCCCAGGTGT
37086202 G
66 G
37086203 TTTCATTGCA
Statistics
Matches: 136, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 136 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (84 bp):
ATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTCACTTTTCATTGCATTTAGAGGCCCAGGTGT
GGAGGTCCATTCACTTTTC
Found at i:37086220 original size:70 final size:70
Alignment explanation
Indices: 37086133--37086272 Score: 208
Period size: 70 Copynumber: 2.0 Consensus size: 70
37086123 TCCATTTACT
* * * * *
37086133 TTTCATTGCATTTAGAGGTCCAAGTGTGGAGGTCCATTCACTTTTCATTGCACTTAGAGACCCAG
1 TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTCACTTTTCATTGCACTTAAAGACCCAG
37086198 GTGTG
66 GTGTG
* * *
37086203 TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTTACTTTTCATTGCATTTAAAGGCCCAG
1 TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTCACTTTTCATTGCACTTAAAGACCCAG
37086268 GTGTG
66 GTGTG
37086273 GAGGTCCATT
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (70 bp):
TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTCACTTTTCATTGCACTTAAAGACCCAG
GTGTG
Found at i:37086242 original size:112 final size:112
Alignment explanation
Indices: 37086091--37086314 Score: 358
Period size: 112 Copynumber: 2.0 Consensus size: 112
37086081 TCGATTCACT
* * * * *
37086091 TTTCATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGTCCAA
1 TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTTACTTTTCATTGCATTTAAAGGCCCAA
*
37086156 GTGTGGAGGTCCATTCACTTTTCATTGCACTTAGAGACCCAGGTGTG
66 GTGTGGAGGTCCATTCACTTTTCATTGCACTTAAAGACCCAGGTGTG
*
37086203 TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTTACTTTTCATTGCATTTAAAGGCCCAG
1 TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTTACTTTTCATTGCATTTAAAGGCCCAA
* * *
37086268 GTGTGGAGGTCCATTCACTTTTCATTTCATTTAAAGGCCCAGGTGTG
66 GTGTGGAGGTCCATTCACTTTTCATTGCACTTAAAGACCCAGGTGTG
37086315 GAGGTCCATT
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
112 102 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (112 bp):
TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTTACTTTTCATTGCATTTAAAGGCCCAA
GTGTGGAGGTCCATTCACTTTTCATTGCACTTAAAGACCCAGGTGTG
Found at i:37086264 original size:42 final size:42
Alignment explanation
Indices: 37086203--37086340 Score: 213
Period size: 42 Copynumber: 3.3 Consensus size: 42
37086193 CCCAGGTGTG
* ** * *
37086203 TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTTACT
1 TTTCATTGCATTTAAAGGCCCAGGTGTGGAGGTCCATTTACT
*
37086245 TTTCATTGCATTTAAAGGCCCAGGTGTGGAGGTCCATTCACT
1 TTTCATTGCATTTAAAGGCCCAGGTGTGGAGGTCCATTTACT
*
37086287 TTTCATTTCATTTAAAGGCCCAGGTGTGGAGGTCCATTTACT
1 TTTCATTGCATTTAAAGGCCCAGGTGTGGAGGTCCATTTACT
37086329 TTTCATTGCATT
1 TTTCATTGCATT
37086341 GTGCATGAAG
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (42 bp):
TTTCATTGCATTTAAAGGCCCAGGTGTGGAGGTCCATTTACT
Found at i:37086330 original size:154 final size:154
Alignment explanation
Indices: 37086049--37086338 Score: 463
Period size: 154 Copynumber: 1.9 Consensus size: 154
37086039 TCCATTCACT
* * * *
37086049 TTTCATTGCACTTAGAGGCCCAAGTGTGGAGGTCGATTCACTTTTCATTGCATTTAGAGGCCCAA
1 TTTCATTGCACTTAGAGGCCCAACTATGGAGGTCAATTCACTTTTCATTGCATTTAAAGGCCCAA
* * *
37086114 GTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGTCCAAGTGTGGAGGTCCATTCACTTTTC
66 GTGTGGAGGTCCATTCACTTTTCATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTCACTTTTC
37086179 ATTGCACTTAGAGACCCAGGTGTG
131 ATTGCACTTAGAGACCCAGGTGTG
* * *
37086203 TTTCATTGCATTTAGAGGCCCAACTATGGAGGTCAATTTACTTTTCATTGCATTTAAAGGCCCAG
1 TTTCATTGCACTTAGAGGCCCAACTATGGAGGTCAATTCACTTTTCATTGCATTTAAAGGCCCAA
* * *
37086268 GTGTGGAGGTCCATTCACTTTTCATTTCATTTAAAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
66 GTGTGGAGGTCCATTCACTTTTCATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTCACTTTTC
37086333 ATTGCA
131 ATTGCA
37086339 TTGTGCATGA
Statistics
Matches: 123, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
154 123 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (154 bp):
TTTCATTGCACTTAGAGGCCCAACTATGGAGGTCAATTCACTTTTCATTGCATTTAAAGGCCCAA
GTGTGGAGGTCCATTCACTTTTCATTGCATTTAAAGGCCCAAGTGTGGAGGTCCATTCACTTTTC
ATTGCACTTAGAGACCCAGGTGTG
Found at i:37087544 original size:152 final size:148
Alignment explanation
Indices: 37087108--37087530 Score: 543
Period size: 152 Copynumber: 2.8 Consensus size: 148
37087098 AATAAAGGTT
* *
37087108 TTTTTTTAAAAAGAGAAAGTTTAGATTTTAAAATATAAAAATATGTTTCTTTTAGTCATTTTAAA
1 TTTTTTTAAAGAGAGAAAGTTTAGATTTTAAAA-A-AAATATATGTTT-TTTTAGTCATTTTAAA
* *
37087173 GGAAAGTTTAAATTTTTAAAACAATATTTTGATTTTTTT-AACTATTTCAAAGCAAAAGCTTTAA
63 GGAAAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTCAACTATTTCAAAGTAAAAGCTTTAA
*
37087237 TCTTTAAGAAAAATAGTGTGTTT
128 TCTTTAAGAAAAATAG-GTG-TC
*
37087260 TTTTTTTAAATG-GAGAAAGTTTAGATTTTAAAAAAAATAAAAATATGTTTTTTTAATCATTTTA
1 TTTTTTTAAA-GAGAGAAAGTTTAGATTTTAAAAAAAAT----ATATGTTTTTTTAGTCATTTTA
* * *
37087324 AAGAAAATTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTTTCAACTATTTCAAAGTAAAAGCT
61 AAGGAAAGTTTAAATTTTTAAAACAAAATTTTGA--TTTTTTTCAACTATTTCAAAGTAAAAGCT
*
37087389 TTAATCTTTAAGGAAAATA-GTG-C
124 TTAATCTTTAAGAAAAATAGGTGTC
* * * *
37087412 TTTTTTTAAAGAGAGAAAGTTTAGATTTTGAAAAAAATATCTATTTTTTTAGTCA-TTTAGAGGA
1 TTTTTTTAAAGAGAGAAAGTTTAGATTTTAAAAAAAATATATGTTTTTTTAGTCATTTTAAAGGA
*
37087476 TAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTCCAACTATTTCGAAA-TAAA
66 AAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTT-CAACTATTTC-AAAGTAAA
37087531 GTTTTGACTT
Statistics
Matches: 241, Mismatches: 19, Indels: 28
0.84 0.07 0.10
Matches are distributed among these distances:
145 7 0.03
146 14 0.06
147 36 0.15
148 14 0.06
150 3 0.01
151 2 0.01
152 66 0.27
153 43 0.18
154 11 0.05
155 7 0.03
156 38 0.16
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.44
Consensus pattern (148 bp):
TTTTTTTAAAGAGAGAAAGTTTAGATTTTAAAAAAAATATATGTTTTTTTAGTCATTTTAAAGGA
AAGTTTAAATTTTTAAAACAAAATTTTGATTTTTTTCAACTATTTCAAAGTAAAAGCTTTAATCT
TTAAGAAAAATAGGTGTC
Found at i:37090027 original size:42 final size:37
Alignment explanation
Indices: 37089947--37090017 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
37089937 TTTCCTAAAG
*
37089947 AATGTAGAGGACTGGATAATCGAGTATATCCTTAGAA
1 AATGTAAAGGACTGGATAATCGAGTATATCCTTAGAA
*
37089984 AATGTAAAGGACTGGGTAATCGAGTATATCCTTA
1 AATGTAAAGGACTGGATAATCGAGTATATCCTTA
37090018 AGGAAGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (37 bp):
AATGTAAAGGACTGGATAATCGAGTATATCCTTAGAA
Found at i:37090812 original size:28 final size:29
Alignment explanation
Indices: 37090781--37090857 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 29
37090771 GGTTTAAAAA
*
37090781 TTTT-AAAAAATAAATTAGGGTTTAGTGTT
1 TTTTAAAAAAATAAATTAGGGCTTAGT-TT
37090810 TTTTAAAAATTAATTAAATTAGGGCTTAGTTT
1 TTTTAAAAA--AA-TAAATTAGGGCTTAGTTT
*
37090842 TTTGAAAAAAA-AAATT
1 TTTTAAAAAAATAAATT
37090858 TATCTAGGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
28 5 0.12
29 4 0.10
30 6 0.14
32 12 0.29
33 15 0.36
ACGTcount: A:0.43, C:0.01, G:0.13, T:0.43
Consensus pattern (29 bp):
TTTTAAAAAAATAAATTAGGGCTTAGTTT
Found at i:37091139 original size:126 final size:126
Alignment explanation
Indices: 37090922--37091240 Score: 462
Period size: 126 Copynumber: 2.5 Consensus size: 126
37090912 AAGTTTCAGG
* * * * * *
37090922 AAAATTAATTTTGAGAATACGGTTCTGAA-AAGATAATGTCAGAAACTCTTCAAGTAGGATGCAC
1 AAAAATAATTTTGAGAAGACGGTTCTGAACAA-ATAGTGTCAAAAACACTTCAAGAAGGATGCAC
* * * *
37090986 TATCAGTAAAATTACTGAAAAAGGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTTTTGA
65 TGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTGA
* *
37091048 AAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACT
1 AAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAAACACTTCAAGAAGGATGCACT
* *
37091113 GTCAGCAAATTTGA-TGAAAAAAGCTCCCATGTGGACGCTCTTTTTCTACAGTAGTTCTTGA
66 GTCAGCAAAATT-ACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTGA
* *
37091174 AAAAATAATTTTGAAAAGACGGTTCTGAACAAATAGTGCCAAAAACACTTCAAGAAGGATGCACT
1 AAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAAACACTTCAAGAAGGATGCACT
37091239 GT
66 GT
37091241 AACACCCCTT
Statistics
Matches: 175, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
126 172 0.98
127 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (126 bp):
AAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAAACACTTCAAGAAGGATGCACT
GTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTGA
Found at i:37093169 original size:51 final size:51
Alignment explanation
Indices: 37093031--37093428 Score: 371
Period size: 51 Copynumber: 7.8 Consensus size: 51
37093021 TACTTTTATC
* * *
37093031 TTTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-ATG-T
1 TTTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCT
*
37093080 TTTACGGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCT
1 TTT-CGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCT
* * * * * *
37093132 TTTTGGTACACATAGTAGCATTCACTTAGTACTACACATGTGACC--ATCAT
1 TTTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGC-T
* * * *
37093182 TTATCGATTCATGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCT
1 TT-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCT
* * * * * * *
37093234 TCTCGGTACACATTGTAGCCTTCACTTAGTACTACATATGTGACC--ATCAT
1 TTTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGC-T
* * * *
37093284 TTATCGATTCACGTAGTAGCCTTCACACAGTACTACACACATGACCAAAGCT
1 TT-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCT
* * * * * *
37093336 TCTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACC--ATCAT
1 TTTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGC-T
* * *
37093386 TTATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TT-TCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTG
37093429 TTCGTCGATA
Statistics
Matches: 275, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
49 9 0.03
50 46 0.17
51 208 0.76
52 8 0.03
53 4 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (51 bp):
TTTCGGTACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCT
Found at i:37093223 original size:102 final size:102
Alignment explanation
Indices: 37093037--37093428 Score: 633
Period size: 102 Copynumber: 3.9 Consensus size: 102
37093027 TATCTTTCGA
* * * * ** *
37093037 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCATGTTTTA-CGGTTCACGTAGTAGCC
1 TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCC
* * *
37093101 TTCACATAGTACTACACACGTGACCAAAGCTTTTTGG
66 TTCACACAGTACTACACACGTGACCAAAGCTTCTCGG
* *
37093138 TACACATAGTAGCATTCACTTAGTACTACACATGTGACCATCATTTATCGATTCATGTAGTAGCC
1 TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCC
37093203 TTCACACAGTACTACACACGTGACCAAAGCTTCTCGG
66 TTCACACAGTACTACACACGTGACCAAAGCTTCTCGG
* *
37093240 TACACATTGTAGCCTTCACTTAGTACTACATATGTGACCATCATTTATCGATTCACGTAGTAGCC
1 TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCC
*
37093305 TTCACACAGTACTACACACATGACCAAAGCTTCTCGG
66 TTCACACAGTACTACACACGTGACCAAAGCTTCTCGG
*
37093342 TACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCC
1 TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCC
37093407 TTCACACAGTACTACACACGTG
66 TTCACACAGTACTACACACGTG
37093429 TTCGTCGATA
Statistics
Matches: 271, Mismatches: 19, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
101 40 0.15
102 231 0.85
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (102 bp):
TACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATTCACGTAGTAGCC
TTCACACAGTACTACACACGTGACCAAAGCTTCTCGG
Found at i:37095632 original size:30 final size:30
Alignment explanation
Indices: 37095598--37095666 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
37095588 ATTAATTAAA
37095598 GAGAGCTTTGAGAAATTTAAGGAGAAA-TTT
1 GAGAGCTTTGAGAAATTTAAGGA-AAATTTT
* * *
37095628 GAGAGTTTTGATAAATTTAGGGAAAATTTT
1 GAGAGCTTTGAGAAATTTAAGGAAAATTTT
37095658 GAGAGCTTT
1 GAGAGCTTT
37095667 TTTGCCAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 3 0.09
30 31 0.91
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (30 bp):
GAGAGCTTTGAGAAATTTAAGGAAAATTTT
Found at i:37096152 original size:41 final size:41
Alignment explanation
Indices: 37096106--37096187 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
37096096 AAAAAGTTAA
*
37096106 ATTATTTCTTTTAATTGACATATTAATTAAAACGTTAATAT
1 ATTATTTCTTTTAATTGAAATATTAATTAAAACGTTAATAT
37096147 ATTATTTCTTTTAATTGAAATATTAATTAAAACGTTAATAT
1 ATTATTTCTTTTAATTGAAATATTAATTAAAACGTTAATAT
37096188 TTTTAACGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.49
Consensus pattern (41 bp):
ATTATTTCTTTTAATTGAAATATTAATTAAAACGTTAATAT
Found at i:37096436 original size:16 final size:16
Alignment explanation
Indices: 37096400--37096454 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
37096390 CACTTGTATA
*
37096400 ATTTTTATTTGTTA-TT
1 ATTTTTATCT-TTATTT
37096416 A-TTTTATCTTTATTT
1 ATTTTTATCTTTATTT
* *
37096431 ATTTTTATGTTCATTT
1 ATTTTTATCTTTATTT
*
37096447 ATATTTAT
1 ATTTTTAT
37096455 GTTTTTTTAC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 3 0.09
15 10 0.30
16 20 0.61
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.71
Consensus pattern (16 bp):
ATTTTTATCTTTATTT
Found at i:37096463 original size:16 final size:15
Alignment explanation
Indices: 37096414--37096463 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
37096404 TTATTTGTTA
*
37096414 TTATTTTATCTTTAT
1 TTATTTTATGTTTAT
*
37096429 TTATTTTTATGTTCAT
1 TTA-TTTTATGTTTAT
*
37096445 TTATATTTATGTTTTT
1 TTAT-TTTATGTTTAT
37096461 TTA
1 TTA
37096464 CACATTCCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 4 0.14
16 25 0.86
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (15 bp):
TTATTTTATGTTTAT
Found at i:37102382 original size:145 final size:145
Alignment explanation
Indices: 37102211--37102483 Score: 363
Period size: 146 Copynumber: 1.9 Consensus size: 145
37102201 TTTTATGATG
** * *
37102211 AAAAATTTAAGAGTTACTACAAATTGTTTAA-TTTCAATT-AGATATTGAATTTTACTCAATTCT
1 AAAAATTTAAGAGTTACTACAAATTGTCAAATTTTCAATTGA-AGATTGAATTTTACCCAATTCT
* ** *
37102274 TTATTT-TTTTCCATACTTAAAATAATTATATTATATTAGTAACACTTTCTATAATTTTCCCATT
65 GTATTTCTTTT-CATACCCAAAATAATTATATTATATTAGTAACACTTTCTATAATTTGCCCATT
37102338 TTATTAATTTACAACTA
129 TTATTAATTTACAACTA
* * * * *
37102355 AAAAATATTAAGATTTATTACATATTGTCAAATTTTCAGTTGAAGATTGATTTTTACCCAATTCT
1 AAAAAT-TTAAGAGTTACTACAAATTGTCAAATTTTCAATTGAAGATTGAATTTTACCCAATTCT
* *
37102420 GTATTTCTTTTCATACCCAAAATAATTATATTATATTAGTAACACTTTTTATAGTTTGCCCATT
65 GTATTTCTTTTCATACCCAAAATAATTATATTATATTAGTAACACTTTCTATAATTTGCCCATT
37102484 CTTTGCGTAC
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
144 6 0.05
145 20 0.18
146 79 0.72
147 5 0.05
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (145 bp):
AAAAATTTAAGAGTTACTACAAATTGTCAAATTTTCAATTGAAGATTGAATTTTACCCAATTCTG
TATTTCTTTTCATACCCAAAATAATTATATTATATTAGTAACACTTTCTATAATTTGCCCATTTT
ATTAATTTACAACTA
Found at i:37107351 original size:26 final size:25
Alignment explanation
Indices: 37107318--37107367 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
37107308 CAAATAAAAA
*
37107318 ATAAAATAATCA-AAATTAAATTAAG
1 ATAAAATAATAATAAATT-AATTAAG
37107343 ATAATAATAATAATAAATTAATTAA
1 ATAA-AATAATAATAAATTAATTAA
37107368 AGAAAGTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 4 0.18
26 13 0.59
27 5 0.23
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (25 bp):
ATAAAATAATAATAAATTAATTAAG
Found at i:37109165 original size:4 final size:4
Alignment explanation
Indices: 37109158--37109196 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
37109148 TAGTTATATA
*
37109158 TATG TATG TATG TATG TATG TATG TATG TATG AATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
37109197 TAATAATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:37111886 original size:18 final size:18
Alignment explanation
Indices: 37111855--37111902 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
37111845 TGTTGTTCGT
*
37111855 TTTCAAAACATTATTC-A
1 TTTCAAAACGTTATTCAA
*
37111872 TTTACAAATCGTTATTCAA
1 TTT-CAAAACGTTATTCAA
37111891 TTTCAAAACGTT
1 TTTCAAAACGTT
37111903 TTTTTATTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 19 0.73
19 4 0.15
ACGTcount: A:0.38, C:0.17, G:0.04, T:0.42
Consensus pattern (18 bp):
TTTCAAAACGTTATTCAA
Found at i:37113839 original size:13 final size:14
Alignment explanation
Indices: 37113815--37113845 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
37113805 AGGAAGCCGT
37113815 GAAAAATCGAAGAA
1 GAAAAATCGAAGAA
37113829 GAAAAAT-GAAGAA
1 GAAAAATCGAAGAA
37113842 GAAA
1 GAAA
37113846 GCCGACGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.68, C:0.03, G:0.23, T:0.06
Consensus pattern (14 bp):
GAAAAATCGAAGAA
Found at i:37117174 original size:41 final size:40
Alignment explanation
Indices: 37117096--37117176 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
37117086 GTAACAGTTT
* * *
37117096 GGGCCTTAGCCCATCTCAGTACAATATCAAATATGCAGTA
1 GGGCCTTAGCCCATCACAATACAATAGCAAATATGCAGTA
**
37117136 GGGCCTTAGCCCATCACAATATCAATAGCAGTTATGCAGTA
1 GGGCCTTAGCCCATCACAATA-CAATAGCAAATATGCAGTA
37117177 TTCAGTAACA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
40 19 0.54
41 16 0.46
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (40 bp):
GGGCCTTAGCCCATCACAATACAATAGCAAATATGCAGTA
Found at i:37121867 original size:16 final size:14
Alignment explanation
Indices: 37121832--37121862 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
37121822 ACTAAGAAGA
*
37121832 TAAATATAAATACT
1 TAAAAATAAATACT
37121846 TAAAAATAAATACT
1 TAAAAATAAATACT
37121860 TAA
1 TAA
37121863 GAAAAGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (14 bp):
TAAAAATAAATACT
Found at i:37123089 original size:289 final size:289
Alignment explanation
Indices: 37122623--37123202 Score: 980
Period size: 289 Copynumber: 2.0 Consensus size: 289
37122613 TCTTTTTCTG
* *
37122623 GTACAAGTCCCACCCACTGAATTTTATAGATAGGATCCATGATCCTTGCTTTAAACCATTGAGAC
1 GTACAAGTCCCACCCACTGAATGTCATAGATAGGATCCATGATCCTTGCTTTAAACCATTGAGAC
* * *
37122688 TCGAGTTTCCCAAGATCAAATACTCGAGATTGAATCGAATTGTTTTGTCCCTTGACAGATCCCTT
66 TCGAGTTTCCCAAGATCAAATACTCAAGATTGAATCGAATTGTTTTGTCCCTTAACAGACCCCTT
* *
37122753 TTCAGTATTTGAAATAGTCCACTCGATACTTTTCTCGTGCCTTTTCAAAATAGTGAAGTCTAACT
131 TTCAGTATTTGAAATAGTCCACTCGATACCTTTCTCGTGCCTTTTCAAAATAGTAAAGTCTAACT
* * *
37122818 CGGATGGCTCTTCTCTTGATGGGTTGGGTTGCTTGTACTCATGTGATGATAGCTCTAATGACTTG
196 CGGATGACTCTTCTCTTGATGGGTTGAGTTGCTTGTACTCATGTGATGATAGCTCTAATGACTCG
*
37122883 AATTTAACTTTTGAACTAAATTCTTCCAA
261 AATTTAAATTTTGAACTAAATTCTTCCAA
* * *
37122912 GTACAAGTCCCACCCACTGAATGTCATAGATGGGATCCATTATCCTTGCTTTTAACCATTGAGAC
1 GTACAAGTCCCACCCACTGAATGTCATAGATAGGATCCATGATCCTTGCTTTAAACCATTGAGAC
* * *
37122977 TTGAGTTTTCCAGGATCAAATACTCAAGATTGAATCGAATTGTTTTGTCCCTTAACAGACCCCTT
66 TCGAGTTTCCCAAGATCAAATACTCAAGATTGAATCGAATTGTTTTGTCCCTTAACAGACCCCTT
* *
37123042 TTCAGTATTTGTAATAGTCCACTCGATACCTTTCTCGTTCCTTTTCAAAATAGTAAAGTCTAACT
131 TTCAGTATTTGAAATAGTCCACTCGATACCTTTCTCGTGCCTTTTCAAAATAGTAAAGTCTAACT
*
37123107 CGGATGACTCTTCTCTTGATGGGTTGATTTGCTTGTACTCATGTGATGATAGCTCTAATGACTCG
196 CGGATGACTCTTCTCTTGATGGGTTGAGTTGCTTGTACTCATGTGATGATAGCTCTAATGACTCG
37123172 AATTTAAATTTTGAACTAAATTCTTCCAA
261 AATTTAAATTTTGAACTAAATTCTTCCAA
37123201 GT
1 GT
37123203 TAGCTTCCAA
Statistics
Matches: 271, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
289 271 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.36
Consensus pattern (289 bp):
GTACAAGTCCCACCCACTGAATGTCATAGATAGGATCCATGATCCTTGCTTTAAACCATTGAGAC
TCGAGTTTCCCAAGATCAAATACTCAAGATTGAATCGAATTGTTTTGTCCCTTAACAGACCCCTT
TTCAGTATTTGAAATAGTCCACTCGATACCTTTCTCGTGCCTTTTCAAAATAGTAAAGTCTAACT
CGGATGACTCTTCTCTTGATGGGTTGAGTTGCTTGTACTCATGTGATGATAGCTCTAATGACTCG
AATTTAAATTTTGAACTAAATTCTTCCAA
Found at i:37130829 original size:14 final size:14
Alignment explanation
Indices: 37130810--37130838 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37130800 ATCTGTGGAC
37130810 TTACCTCGCCACCA
1 TTACCTCGCCACCA
37130824 TTACCTCGCCACCA
1 TTACCTCGCCACCA
37130838 T
1 T
37130839 AAAAATGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.48, G:0.07, T:0.24
Consensus pattern (14 bp):
TTACCTCGCCACCA
Found at i:37132168 original size:19 final size:20
Alignment explanation
Indices: 37132134--37132173 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
37132124 ACATGTGTAC
*
37132134 TAATAATAAACTTATGTATT
1 TAATAATAAACATATGTATT
37132154 TAATAATAAA-ATATGTATT
1 TAATAATAAACATATGTATT
37132173 T
1 T
37132174 CTTATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (20 bp):
TAATAATAAACATATGTATT
Found at i:37133306 original size:40 final size:40
Alignment explanation
Indices: 37133184--37133315 Score: 126
Period size: 40 Copynumber: 3.4 Consensus size: 40
37133174 CTTTGAGTCG
* * * * *
37133184 ATGAGACAGTGGGTGTCAATTTATGACTTCGAATTAATTTC
1 ATGAGACACTGGGTGTCAAATTATTACTTCGAATT-ATCTA
* ** * **
37133225 ATGAGGCACTGGGTGTC-AA-T-TTACTTCGGTTTAGCCG
1 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCTA
37133262 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCTA
1 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCTA
*
37133302 ATGAGGCACTGGGT
1 ATGAGACACTGGGT
37133316 ACCAAACCGG
Statistics
Matches: 71, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
37 17 0.24
38 11 0.15
39 2 0.03
40 26 0.37
41 15 0.21
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (40 bp):
ATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCTA
Found at i:37139840 original size:6 final size:6
Alignment explanation
Indices: 37139813--37139896 Score: 53
Period size: 6 Copynumber: 13.5 Consensus size: 6
37139803 ATTTTATTTG
* * * * * *
37139813 TTTTCT TTTTAA TTTTAA TTTTATT TTTTAT GTTTAT GTTTAT GTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT
* *
37139862 TTTTAT CTTTAGT TATTT-T GTTTCAT TTTTAT TTT
1 TTTTAT TTTTA-T T-TTTAT -TTTTAT TTTTAT TTT
37139897 CTTGTACTTC
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
6 53 0.83
7 8 0.12
8 3 0.05
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:37139867 original size:12 final size:12
Alignment explanation
Indices: 37139832--37139893 Score: 63
Period size: 12 Copynumber: 4.9 Consensus size: 12
37139822 TAATTTTAAT
37139832 TTTATTTTTTATG
1 TTTA-TTTTTATG
*
37139845 TTTATGTTTATG
1 TTTATTTTTATG
*
37139857 TTTATTTTTATC
1 TTTATTTTTATG
37139869 TTTAGTTATTT-TG
1 TTTA-TT-TTTATG
37139882 TTTCATTTTTAT
1 TTT-ATTTTTAT
37139894 TTTCTTGTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
12 24 0.59
13 13 0.32
14 4 0.10
ACGTcount: A:0.16, C:0.03, G:0.08, T:0.73
Consensus pattern (12 bp):
TTTATTTTTATG
Found at i:37162759 original size:3 final size:3
Alignment explanation
Indices: 37162753--37162813 Score: 68
Period size: 3 Copynumber: 19.7 Consensus size: 3
37162743 ATAAATTGGT
* * *
37162753 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTTG TCA CTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TT-A
*
37162800 TTA TTT TTA TTA TT
1 TTA TTA TTA TTA TT
37162814 CATCAATTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
3 43 0.90
4 5 0.10
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:37165890 original size:23 final size:23
Alignment explanation
Indices: 37165870--37165913 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
37165860 TAGCACTTTG
* *
37165870 GTGCGATTCATTTTGGCACTTAA
1 GTGCGATCCATTCTGGCACTTAA
*
37165893 GTGGGATCCATTCTGGCACTT
1 GTGCGATCCATTCTGGCACTT
37165914 CTTTGCAACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.36
Consensus pattern (23 bp):
GTGCGATCCATTCTGGCACTTAA
Found at i:37167480 original size:24 final size:23
Alignment explanation
Indices: 37167448--37167502 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
37167438 ACCACTAATA
*
37167448 AAAATATGCAGAAAATTCTGCCAGT
1 AAAA-ATGCAGAAAA-GCTGCCAGT
*
37167473 AAAAATGCAGACAAGCTGCCAGT
1 AAAAATGCAGAAAAGCTGCCAGT
37167496 AAAAATG
1 AAAAATG
37167503 TGATAAATCG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 15 0.54
24 9 0.32
25 4 0.14
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.18
Consensus pattern (23 bp):
AAAAATGCAGAAAAGCTGCCAGT
Found at i:37171502 original size:10 final size:10
Alignment explanation
Indices: 37171479--37171558 Score: 76
Period size: 10 Copynumber: 8.0 Consensus size: 10
37171469 CATGCGGTTT
* *
37171479 AGCTCACTTG
1 AGCTCAATTC
*
37171489 AGCTCAAGTC
1 AGCTCAATTC
37171499 AGCTC-ATTC
1 AGCTCAATTC
*
37171508 GAGCTCAAGTC
1 -AGCTCAATTC
37171519 AGCTC-ATTC
1 AGCTCAATTC
37171528 GAGCTCAATTC
1 -AGCTCAATTC
37171539 AGCTC-ATTC
1 AGCTCAATTC
37171548 AAGCTCAATTC
1 -AGCTCAATTC
37171559 GGCTTATTGA
Statistics
Matches: 58, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
9 10 0.17
10 37 0.64
11 11 0.19
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (10 bp):
AGCTCAATTC
Found at i:37171523 original size:40 final size:39
Alignment explanation
Indices: 37171479--37171572 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 39
37171469 CATGCGGTTT
*
37171479 AGCTCACTTGAGCTCAAGTCAGCTCATTCGAGCTCAAGTC
1 AGCTCA-TTGAGCTCAAGTCAGCTCATTCAAGCTCAAGTC
* *
37171519 AGCTCATTCGAGCTCAATTCAGCTCATTCAAGCTCAATTC
1 AGCTCATT-GAGCTCAAGTCAGCTCATTCAAGCTCAAGTC
* *
37171559 GGCTTATTGAGCTC
1 AGCTCATTGAGCTC
37171573 GTTATTAGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 8 0.17
40 40 0.83
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (39 bp):
AGCTCATTGAGCTCAAGTCAGCTCATTCAAGCTCAAGTC
Found at i:37171558 original size:20 final size:20
Alignment explanation
Indices: 37171479--37171555 Score: 120
Period size: 20 Copynumber: 3.9 Consensus size: 20
37171469 CATGCGGTTT
37171479 AGCTCACTT-GAGCTCAAGTC
1 AGCTCA-TTCGAGCTCAAGTC
37171499 AGCTCATTCGAGCTCAAGTC
1 AGCTCATTCGAGCTCAAGTC
*
37171519 AGCTCATTCGAGCTCAATTC
1 AGCTCATTCGAGCTCAAGTC
*
37171539 AGCTCATTCAAGCTCAA
1 AGCTCATTCGAGCTCAA
37171556 TTCGGCTTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
19 2 0.04
20 52 0.96
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (20 bp):
AGCTCATTCGAGCTCAAGTC
Found at i:37183377 original size:38 final size:37
Alignment explanation
Indices: 37183310--37183399 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 37
37183300 GCAGAACAAA
*
37183310 TATCTACTAGTCCTTCAGGTGAAACTATGACAACGGT
1 TATCTACTAGTCCTTCAGGTGAAACTATGACAACGAT
* ** * * *
37183347 TATCTACTGGTCCTTCAAGGTGCCATTATGACGACTAT
1 TATCTACTAGTCCTTC-AGGTGAAACTATGACAACGAT
37183385 TATCTACTAGTCCTT
1 TATCTACTAGTCCTT
37183400 TGGAGTGATA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 15 0.34
38 29 0.66
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (37 bp):
TATCTACTAGTCCTTCAGGTGAAACTATGACAACGAT
Found at i:37194523 original size:23 final size:20
Alignment explanation
Indices: 37194471--37194524 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
37194461 TGATCTATAC
37194471 TAATAATAATAAGAAAATAAA
1 TAATAA-AATAAGAAAATAAA
* *
37194492 GAATTAAATCAAGAGAAATCAAA
1 TAATAAAAT-AAGA-AAAT-AAA
37194515 TAATAAAATA
1 TAATAAAATA
37194525 TATATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 3 0.12
21 8 0.31
22 5 0.19
23 10 0.38
ACGTcount: A:0.67, C:0.04, G:0.07, T:0.22
Consensus pattern (20 bp):
TAATAAAATAAGAAAATAAA
Found at i:37201350 original size:22 final size:23
Alignment explanation
Indices: 37201318--37201365 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
37201308 GCATATTTAT
* *
37201318 TTTTTATTTTTAGTTTAG-TTTG
1 TTTTTAATTTTAATTTAGTTTTG
*
37201340 TTTTTAATTTTAATTTTGTTTTG
1 TTTTTAATTTTAATTTAGTTTTG
37201363 TTT
1 TTT
37201366 AGTTTGCTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.75
Consensus pattern (23 bp):
TTTTTAATTTTAATTTAGTTTTG
Found at i:37202492 original size:19 final size:19
Alignment explanation
Indices: 37202468--37202506 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37202458 TTATCTATCG
37202468 TAATA-TAAGATTTGATTAT
1 TAATATTAAGATTT-ATTAT
*
37202487 TAATATTTAGATTTATTAT
1 TAATATTAAGATTTATTAT
37202506 T
1 T
37202507 GTAAAGAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
TAATATTAAGATTTATTAT
Found at i:37217209 original size:23 final size:22
Alignment explanation
Indices: 37217177--37217238 Score: 88
Period size: 22 Copynumber: 2.7 Consensus size: 22
37217167 CCCGGCCCGT
*
37217177 TTTTTAATTAAAATTAAAATTATA
1 TTTTT-ATTAAAATTAAAACTA-A
37217201 TTTTTATTAAAATTAAAACTAA
1 TTTTTATTAAAATTAAAACTAA
*
37217223 TTGTTATTAAAATTAA
1 TTTTTATTAAAATTAA
37217239 TTGTTATCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 16 0.44
23 15 0.42
24 5 0.14
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTTATTAAAATTAAAACTAA
Found at i:37217233 original size:16 final size:16
Alignment explanation
Indices: 37217212--37217265 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
37217202 TTTTATTAAA
*
37217212 ATTAAAACTAATTGTT
1 ATTAAAATTAATTGTT
37217228 ATTAAAATTAATTGTT
1 ATTAAAATTAATTGTT
* *
37217244 ATCAAAATTAATTATT
1 ATTAAAATTAATTGTT
37217260 ATTAAA
1 ATTAAA
37217266 TTTGTATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (16 bp):
ATTAAAATTAATTGTT
Found at i:37217362 original size:28 final size:27
Alignment explanation
Indices: 37217322--37217378 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 27
37217312 ATCTAACATT
* * *
37217322 TTGTTAGTAAAATTATTAATTGTATTAA
1 TTGTTACTAAAATTATCAAAT-TATTAA
37217350 TTGTTACTAAAATTATCAAATTATTAA
1 TTGTTACTAAAATTATCAAATTATTAA
37217377 TT
1 TT
37217379 ATTAATTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 8 0.31
28 18 0.69
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (27 bp):
TTGTTACTAAAATTATCAAATTATTAA
Found at i:37217394 original size:76 final size:82
Alignment explanation
Indices: 37217314--37217475 Score: 228
Period size: 83 Copynumber: 2.0 Consensus size: 82
37217304 TTTGTAAAAT
37217314 CTAACATTTTGTTAGT-AAA-ATT-A-TTAATTGTATTAATTGTTACTAAAATTATCAAATTAT-
1 CTAACATTTTGTTAGTAAAATATTAATTTAATTGTATTAATTGTTACTAAAATTATCAAATTATA
37217374 T-AATTATTAATTGTTA
66 TAAATTATTAATTGTTA
* *
37217390 CTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTATTAATTGTTAGTAATATTATCAAATT
1 CTAACATTTTGTTAGTAAAA-TATTAA-T-TTAATTGTATTAATTGTTACTAAAATTATCAAATT
37217455 ATATCAAATTATTAATTGTTA
63 ATAT-AAATTATTAATTGTTA
37217476 ATTGTATTAA
Statistics
Matches: 74, Mismatches: 2, Indels: 10
0.86 0.02 0.12
Matches are distributed among these distances:
76 16 0.22
77 3 0.04
79 3 0.04
80 1 0.01
83 35 0.47
84 1 0.01
86 15 0.20
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (82 bp):
CTAACATTTTGTTAGTAAAATATTAATTTAATTGTATTAATTGTTACTAAAATTATCAAATTATA
TAAATTATTAATTGTTA
Found at i:37217424 original size:40 final size:40
Alignment explanation
Indices: 37217314--37217427 Score: 141
Period size: 40 Copynumber: 3.0 Consensus size: 40
37217304 TTTGTAAAAT
37217314 CTAACATTTTGTTAGTAAAATTATTAATTGTATTAATTGTTA
1 CTAACATTTTGTTAGTAAAATTATTAATTG--TTAATTGTTA
* * *
37217356 CTAA-A----ATTA-TCAAATTATTAATTATTAATTGTTA
1 CTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTTA
37217390 CTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGT
1 CTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGT
37217428 ATTAATTGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
34 14 0.23
35 1 0.02
36 13 0.22
37 3 0.05
39 3 0.05
40 21 0.35
41 1 0.02
42 4 0.07
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (40 bp):
CTAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTTA
Found at i:37217446 original size:16 final size:16
Alignment explanation
Indices: 37217378--37217447 Score: 54
Period size: 16 Copynumber: 4.3 Consensus size: 16
37217368 AATTATTAAT
*
37217378 TATTAATTGTTACTAA
1 TATTAATTGTTAGTAA
*
37217394 CATT--TTGTTAGTAAAA
1 TATTAATTGTTAGT--AA
* **
37217410 TTATTAATTGTTAATTG
1 -TATTAATTGTTAGTAA
37217427 TATTAATTGTTAGTAA
1 TATTAATTGTTAGTAA
37217443 TATTA
1 TATTA
37217448 TCAAATTATA
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
14 7 0.17
16 23 0.57
17 3 0.08
19 7 0.17
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (16 bp):
TATTAATTGTTAGTAA
Found at i:37217553 original size:22 final size:21
Alignment explanation
Indices: 37217522--37217567 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
37217512 TAACTTAAAA
*
37217522 TAAAACTAAAACTAGTATAT-TT
1 TAAAAATAAAA-TA-TATATATT
37217544 TAAAAATAAAATATATATATT
1 TAAAAATAAAATATATATATT
37217565 TAA
1 TAA
37217568 TATATTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 7 0.32
22 10 0.45
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (21 bp):
TAAAAATAAAATATATATATT
Found at i:37217730 original size:18 final size:18
Alignment explanation
Indices: 37217707--37217741 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37217697 CCCATATTTC
37217707 GGGCGGGCCGCCAGGCCG
1 GGGCGGGCCGCCAGGCCG
*
37217725 GGGCGGGCCGCCCGGCC
1 GGGCGGGCCGCCAGGCC
37217742 CATGGACAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.43, G:0.54, T:0.00
Consensus pattern (18 bp):
GGGCGGGCCGCCAGGCCG
Found at i:37218659 original size:9 final size:9
Alignment explanation
Indices: 37218645--37218669 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37218635 TACTACTTAT
37218645 TTAGATTAA
1 TTAGATTAA
37218654 TTAGATTAA
1 TTAGATTAA
37218663 TTAGATT
1 TTAGATT
37218670 TTTAATATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (9 bp):
TTAGATTAA
Found at i:37220652 original size:21 final size:20
Alignment explanation
Indices: 37220620--37220678 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
37220610 GAGACAGGAC
*
37220620 AAAATGAGTGAATAAATATAG
1 AAAA-GAGTGAATAAATAAAG
* *
37220641 AAAAGAGCTGAAAAAACAAAG
1 AAAAGAG-TGAATAAATAAAG
37220662 AAAA-AGTGATATAAATA
1 AAAAGAGTGA-ATAAATA
37220679 CCAAAGGTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 3 0.10
20 10 0.32
21 18 0.58
ACGTcount: A:0.63, C:0.03, G:0.17, T:0.17
Consensus pattern (20 bp):
AAAAGAGTGAATAAATAAAG
Found at i:37228305 original size:45 final size:45
Alignment explanation
Indices: 37228150--37228320 Score: 166
Period size: 45 Copynumber: 3.8 Consensus size: 45
37228140 TGCGGACTCG
* * * * **
37228150 TAGAAGAAGATTAATGGATATGGCAGGCTCATACATGCGG-ATTCA
1 TAGAAGAATATTCATAGATATGGTAGATTCATACATG-GGAATTCA
* *** * ** *
37228195 TAGAAGAATATTTATAGATACCATAGATTCATATATGCAAAATCA
1 TAGAAGAATATTCATAGATATGGTAGATTCATACATGGGAATTCA
37228240 TAGAAGAATATTCATAGATATGGTAGATTCATACATGGGAATTCA
1 TAGAAGAATATTCATAGATATGGTAGATTCATACATGGGAATTCA
* *
37228285 TAGAAAAATATTCATAGATATAGG-GGATTCATACAT
1 TAGAAGAATATTCATAGATAT-GGTAGATTCATACAT
37228321 ACGAACTCTG
Statistics
Matches: 101, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
45 99 0.98
46 2 0.02
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.29
Consensus pattern (45 bp):
TAGAAGAATATTCATAGATATGGTAGATTCATACATGGGAATTCA
Found at i:37239401 original size:20 final size:21
Alignment explanation
Indices: 37239364--37239403 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37239354 TTAACCCCTG
*
37239364 ACCCCTAAACCTTAAATCTCA
1 ACCCCTAAACCATAAATCTCA
*
37239385 ACCCTTAAACCAT-AATCTC
1 ACCCCTAAACCATAAATCTC
37239404 TAATTCATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (21 bp):
ACCCCTAAACCATAAATCTCA
Found at i:37239443 original size:29 final size:29
Alignment explanation
Indices: 37239411--37239471 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
37239401 CTCTAATTCA
37239411 TAATCCCTAAATCCATACTC-CATAAACCT
1 TAATCCCTAAATCCATACTCTC-TAAACCT
37239440 TAATCCCTAAATCCATACTCTCTAAACCT
1 TAATCCCTAAATCCATACTCTCTAAACCT
37239469 TAA
1 TAA
37239472 AATATGAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 30 0.97
30 1 0.03
ACGTcount: A:0.38, C:0.33, G:0.00, T:0.30
Consensus pattern (29 bp):
TAATCCCTAAATCCATACTCTCTAAACCT
Found at i:37239740 original size:22 final size:22
Alignment explanation
Indices: 37239695--37239740 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
37239685 CTTAAATCCC
* *
37239695 AACCCCTAATCCATAATCCCTA
1 AACCCATAATCCATAAACCCTA
* *
37239717 AACCCATACTCCATAAACCTTA
1 AACCCATAATCCATAAACCCTA
37239739 AA
1 AA
37239741 ATATGAACTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (22 bp):
AACCCATAATCCATAAACCCTA
Found at i:37240183 original size:114 final size:112
Alignment explanation
Indices: 37239983--37240518 Score: 660
Period size: 114 Copynumber: 4.9 Consensus size: 112
37239973 TAAAATATTT
* * *
37239983 TTAGCGGCGCTTT-TCCAAAAACACCGCTAAATCCCCGAAAGCTCAGAAAACGGTTTCGTTGGGC
1 TTAGCGGCGCTTTCT-TAAAAACGCCGCTAAATCCCCGAAAGCT-AGAAAAC-GTGTCGTTGGGC
37240047 TTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
63 TTAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
* * *
37240097 TTAGCGGCGCTATCTTAAAAACGCCGCTAAATCCCTGGAAGCTAAGAAAACGGTGTCGTTGGGCT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCT-AGAAAAC-GTGTCGTTGGGCT
* * * *
37240162 TAGGTTTTTTTGCGGCGCTTTCTCAAAAACGTCGCTAAAGCTCTAAGCA
64 TAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
* * *
37240211 TTAGCGGCGCTTTCTTAAAAATGCCGCTAAATCCCCGAAAGCTCAGAAAA--TGGCGTGGGGCTT
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCT-AGAAAACGTGTCGTTGGGCTT
* * *
37240274 AGGTTTTTTTGTGGCACTTTCCCAAAAATGCCGCTAAAGCCCTGAGCA
65 AGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
* *
37240322 TTAGCGGCGCTTTCTTATAAACGCCGCTAAATCCCCGAAAGCT--AAAA-----CGTTGAGCTTA
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAGAAAACGTGTCGTTGGGCTTA
* * *
37240380 GGTTTTTTTGCGGCGCTTTTCCAAAAACACCGCTAAAGCCCTTAGCA
66 GGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
* * * *
37240427 TTAGCGGCGCTTTCTTAGAAACGCCGCTAAATCCTCGAAAAC--G---AC--GTCATTGGGCTTA
1 TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAGAAAACGTGTCGTTGGGCTTA
37240485 GG-TTTTTTGCGGCGCTTT-CCAAAAACGCCGCTAA
66 GGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAA
37240519 TGCTTATTTT
Statistics
Matches: 376, Mismatches: 41, Indels: 21
0.86 0.09 0.05
Matches are distributed among these distances:
102 1 0.00
103 15 0.04
104 16 0.04
105 100 0.27
108 4 0.01
111 93 0.25
114 146 0.39
115 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (112 bp):
TTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAGAAAACGTGTCGTTGGGCTTA
GGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
Found at i:37240429 original size:105 final size:104
Alignment explanation
Indices: 37240153--37240518 Score: 464
Period size: 105 Copynumber: 3.4 Consensus size: 104
37240143 AAAACGGTGT
* *
37240153 CGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGTCGCTAAAGCTCTAAGCATTAGCGG
1 CGTTGGGCTTAGGTTTTTTTGCGGCGCTTTC-CAAAAACGCCGCTAAAGCCCTAAGCATTAGCGG
*
37240218 CGCTTTCTTAAAAATGCCGCTAAATCCCCGAAAGCTCAGAAAA
65 CGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCT---AAAA
* * * * *
37240261 TGGCGTGGGGCTTAGGTTTTTTTGTGGCACTTTCCCAAAAATGCCGCTAAAGCCCTGAGCATTAG
1 ---CGTTGGGCTTAGGTTTTTTTGCGGCGCTTT-CCAAAAACGCCGCTAAAGCCCTAAGCATTAG
*
37240326 CGGCGCTTTCTTATAAACGCCGCTAAATCCCCGAAAGCTAAAA
62 CGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAAAA
* * *
37240369 CGTTGAGCTTAGGTTTTTTTGCGGCGCTTTTCCAAAAACACCGCTAAAGCCCTTAGCATTAGCGG
1 CGTTGGGCTTAGGTTTTTTTGCGGCGC-TTTCCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGG
* * * * ***
37240434 CGCTTTCTTAGAAACGCCGCTAAATCCTCGAAAACGACGT
65 CGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAAAA
*
37240474 CATTGGGCTTAGG-TTTTTTGCGGCGCTTTCCAAAAACGCCGCTAA
1 CGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCAAAAACGCCGCTAA
37240519 TGCTTATTTT
Statistics
Matches: 227, Mismatches: 26, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
103 18 0.08
104 13 0.06
105 98 0.43
106 3 0.01
108 4 0.02
111 90 0.40
112 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (104 bp):
CGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGC
GCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAAAA
Found at i:37246250 original size:25 final size:25
Alignment explanation
Indices: 37246226--37246337 Score: 102
Period size: 25 Copynumber: 4.5 Consensus size: 25
37246216 GTACATGTAT
* *
37246226 GCTCTTACGAGCTATTAATCGGTAT
1 GCTCTTACGAGCTATAAATCGGTAA
* * * *
37246251 GCTCTCAGGAGCTGTAAATCGATAA
1 GCTCTTACGAGCTATAAATCGGTAA
* *
37246276 GCTCATACGAGCTGA-GAATCGGTAA
1 GCTCTTACGAGCT-ATAAATCGGTAA
* **
37246301 GCTCTCACGAGCT-GCAATCGGTAA
1 GCTCTTACGAGCTATAAATCGGTAA
37246325 GCTCTTACGAGCT
1 GCTCTTACGAGCT
37246338 GCTATCAGTA
Statistics
Matches: 69, Mismatches: 16, Indels: 5
0.77 0.18 0.06
Matches are distributed among these distances:
24 21 0.30
25 48 0.70
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
GCTCTTACGAGCTATAAATCGGTAA
Found at i:37246296 original size:50 final size:49
Alignment explanation
Indices: 37246242--37246338 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 49
37246232 ACGAGCTATT
* *
37246242 AATCGGTATGCTCTCAGGAGCTGTAAATCGATAAGCTCATACGAGCTGAG
1 AATCGGTAAGCTCTCACGAGCTG-AAATCGATAAGCTCATACGAGCTGAG
* * *
37246292 AATCGGTAAGCTCTCACGAGCTGCAATCGGTAAGCTCTTACGAGCTG
1 AATCGGTAAGCTCTCACGAGCTGAAATCGATAAGCTCATACGAGCTG
37246339 CTATCAGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
49 21 0.50
50 21 0.50
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24
Consensus pattern (49 bp):
AATCGGTAAGCTCTCACGAGCTGAAATCGATAAGCTCATACGAGCTGAG
Found at i:37246324 original size:24 final size:25
Alignment explanation
Indices: 37246242--37246352 Score: 113
Period size: 25 Copynumber: 4.5 Consensus size: 25
37246232 ACGAGCTATT
* *
37246242 AATCGGTATGCTCTCAGGAGCTGTA-
1 AATCGGTAAGCTCTCACGAGCTG-AC
* *
37246267 AATCGATAAGCTCAT-ACGAGCTGAG
1 AATCGGTAAGCTC-TCACGAGCTGAC
37246292 AATCGGTAAGCTCTCACGAGCTG-C
1 AATCGGTAAGCTCTCACGAGCTGAC
*
37246316 AATCGGTAAGCTCTTACGAGCTG-C
1 AATCGGTAAGCTCTCACGAGCTGAC
* *
37246340 TATCAGTAAGCTC
1 AATCGGTAAGCTC
37246353 ATATGACCTG
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
24 36 0.48
25 38 0.51
26 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (25 bp):
AATCGGTAAGCTCTCACGAGCTGAC
Found at i:37248307 original size:21 final size:21
Alignment explanation
Indices: 37248277--37248316 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
37248267 TTACACCACA
37248277 TTGTGAATAAACCACTCATCG
1 TTGTGAATAAACCACTCATCG
*
37248298 TTGTGGATAAACCACTCAT
1 TTGTGAATAAACCACTCAT
37248317 AATAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (21 bp):
TTGTGAATAAACCACTCATCG
Done.