Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 119 of 211
Found at i:37544544 original size:29 final size:30
Alignment explanation
Indices: 37544485--37544542 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37544475 TCCGAGCCTT
*
37544485 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
37544515 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
37544543 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:37544772 original size:13 final size:13
Alignment explanation
Indices: 37544754--37544785 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
37544744 TTTCCAGCAA
37544754 TTATGAATTTATT
1 TTATGAATTTATT
37544767 TTATGAATTTATT
1 TTATGAATTTATT
*
37544780 TGATGA
1 TTATGA
37544786 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:37544993 original size:50 final size:50
Alignment explanation
Indices: 37544880--37545121 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
37544870 ATTTGGGTAA
* * *
37544880 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
37544936 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37544986 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37545036 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
37545086 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
37545122 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:37545069 original size:100 final size:103
Alignment explanation
Indices: 37544880--37545129 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
37544870 ATTTGGGTAA
37544880 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
37544945 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
37544986 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
37545048 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
37545086 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
37545130 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:37547355 original size:12 final size:13
Alignment explanation
Indices: 37547324--37547348 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37547314 CTTAAAATAT
37547324 TTAAATTTTAAAA
1 TTAAATTTTAAAA
37547337 TTAAATTTTAAA
1 TTAAATTTTAAA
37547349 TACAATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAAATTTTAAAA
Found at i:37547993 original size:22 final size:22
Alignment explanation
Indices: 37547961--37548014 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
37547951 TCCAAAGAAT
37547961 AACAACAAAATGACAACAAAAC
1 AACAACAAAATGACAACAAAAC
* ** *
37547983 AACAACGAAATGGTAGCAAAAC
1 AACAACAAAATGACAACAAAAC
*
37548005 AACAGCAAAA
1 AACAACAAAA
37548015 AGTTTAGGCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.63, C:0.20, G:0.11, T:0.06
Consensus pattern (22 bp):
AACAACAAAATGACAACAAAAC
Found at i:37552798 original size:16 final size:19
Alignment explanation
Indices: 37552761--37552799 Score: 57
Period size: 16 Copynumber: 2.2 Consensus size: 19
37552751 GAATGCTTTA
37552761 AAATTTAGAGATCAATTTT
1 AAATTTAGAGATCAATTTT
37552780 AAATTT-GAG-TCAA-TTT
1 AAATTTAGAGATCAATTTT
37552796 AAAT
1 AAAT
37552800 GTATAGGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 7 0.35
17 4 0.20
18 3 0.15
19 6 0.30
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (19 bp):
AAATTTAGAGATCAATTTT
Found at i:37564681 original size:82 final size:81
Alignment explanation
Indices: 37564514--37564688 Score: 190
Period size: 82 Copynumber: 2.1 Consensus size: 81
37564504 CTTTTTGGCC
* ** * * * *** *
37564514 AAGTATCGATATTTTATGAATTATCGATACCCTTCTTAAAAGCGATACCAAAATGGCATTTTATT
1 AAGTATCGATATTTCAAAAAATATCGATACCCTTCTTAAAAACAATACCAAAACAACATTCTATT
* *
37564579 TTTCACAAACCCTATT
66 TCTCACAAACCCTATA
*
37564595 AAGTATCGATATTTCAAAAAATATCGATACCCCTTCTTAAAAACAATACTAAAACAACATTCTAT
1 AAGTATCGATATTTCAAAAAATATCGATA-CCCTTCTTAAAAACAATACCAAAACAACATTCTAT
*
37564660 TTCTCACAATA-CTTATA
65 TTCTCACAA-ACCCTATA
*
37564677 AAGTATCAATAT
1 AAGTATCGATAT
37564689 GGTATCGATA
Statistics
Matches: 77, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 25 0.32
82 51 0.66
83 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (81 bp):
AAGTATCGATATTTCAAAAAATATCGATACCCTTCTTAAAAACAATACCAAAACAACATTCTATT
TCTCACAAACCCTATA
Found at i:37571353 original size:38 final size:38
Alignment explanation
Indices: 37571302--37571381 Score: 151
Period size: 38 Copynumber: 2.1 Consensus size: 38
37571292 ATAAATTTTA
37571302 TTTATCTATCTATTTTTCAAGATTGGGATTGGATGAAT
1 TTTATCTATCTATTTTTCAAGATTGGGATTGGATGAAT
*
37571340 TTTATTTATCTATTTTTCAAGATTGGGATTGGATGAAT
1 TTTATCTATCTATTTTTCAAGATTGGGATTGGATGAAT
37571378 TTTA
1 TTTA
37571382 AAAAAAAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.26, C:0.06, G:0.17, T:0.50
Consensus pattern (38 bp):
TTTATCTATCTATTTTTCAAGATTGGGATTGGATGAAT
Found at i:37572826 original size:43 final size:43
Alignment explanation
Indices: 37572736--37572817 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
37572726 TTCTGATAAA
*
37572736 TGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTG
1 TGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTG
37572779 TGTTTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGA
1 TGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGA
37572818 TATTTGTTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
42 1 0.03
43 34 0.94
44 1 0.03
ACGTcount: A:0.17, C:0.20, G:0.30, T:0.33
Consensus pattern (43 bp):
TGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTG
Found at i:37572834 original size:43 final size:43
Alignment explanation
Indices: 37572744--37572855 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 43
37572734 AATGTTTTTG
* *
37572744 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGTTTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGTTTACA
*
37572787 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGA-TATTTGTTTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGACT-TGTGTTTACA
** * *
37572830 TGTAAGACTGCGTCTGAGACATTGGC
1 TGTAAGACCACGTCTGGGACGTTGGC
37572856 GTTGTACAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.03
43 54 0.93
44 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGTTTACA
Found at i:37579666 original size:26 final size:26
Alignment explanation
Indices: 37579637--37579711 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 26
37579627 TACCAATCTC
37579637 TTCATATTCAAGCCTAATTCATCAAT
1 TTCATATTCAAGCCTAATTCATCAAT
*** *
37579663 TTCACCCT-AATCC-AA-TC-TC---
1 TTCATATTCAAGCCTAATTCATCAAT
37579682 TTCATATTCAAGCCTAATTCATCAAT
1 TTCATATTCAAGCCTAATTCATCAAT
37579708 TTCA
1 TTCA
37579712 CCCTAATGAC
Statistics
Matches: 34, Mismatches: 8, Indels: 14
0.61 0.14 0.25
Matches are distributed among these distances:
19 5 0.15
20 4 0.12
21 2 0.06
22 4 0.12
23 4 0.12
24 2 0.06
25 4 0.12
26 9 0.26
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (26 bp):
TTCATATTCAAGCCTAATTCATCAAT
Found at i:37579680 original size:45 final size:45
Alignment explanation
Indices: 37579629--37579718 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
37579619 TTTCTAACTA
37579629 CCAATCTCTTCATATTCAAGCCTAATTCATCAATTTCACCCTAAT
1 CCAATCTCTTCATATTCAAGCCTAATTCATCAATTTCACCCTAAT
37579674 CCAATCTCTTCATATTCAAGCCTAATTCATCAATTTCACCCTAAT
1 CCAATCTCTTCATATTCAAGCCTAATTCATCAATTTCACCCTAAT
37579719 GACAACTTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.31, G:0.02, T:0.36
Consensus pattern (45 bp):
CCAATCTCTTCATATTCAAGCCTAATTCATCAATTTCACCCTAAT
Found at i:37585246 original size:41 final size:41
Alignment explanation
Indices: 37585148--37585250 Score: 170
Period size: 41 Copynumber: 2.5 Consensus size: 41
37585138 GGCTCTGTGC
**
37585148 CTAGCAGGCTTAATGCAAGTGAAATATTTCAGAATTTACGT
1 CTAGCAGGCTTAATGCCGGTGAAATATTTCAGAATTTACGT
* *
37585189 CTAGCAGGCTTAATGCCGGTGAAATATTTCAGACTTTATGT
1 CTAGCAGGCTTAATGCCGGTGAAATATTTCAGAATTTACGT
37585230 CTAGCAGGCTTAATGCCGGTG
1 CTAGCAGGCTTAATGCCGGTG
37585251 TTCTGAATCA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (41 bp):
CTAGCAGGCTTAATGCCGGTGAAATATTTCAGAATTTACGT
Found at i:37594072 original size:22 final size:23
Alignment explanation
Indices: 37594047--37594089 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
37594037 AAATCTTTAA
*
37594047 ATTTTAA-AAAATAAGCATATTT
1 ATTTTAATAAAAAAAGCATATTT
*
37594069 ATTTTAATAAAAAAAGTATAT
1 ATTTTAATAAAAAAAGCATAT
37594090 AATGTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (23 bp):
ATTTTAATAAAAAAAGCATATTT
Found at i:37596317 original size:16 final size:16
Alignment explanation
Indices: 37596296--37596343 Score: 71
Period size: 16 Copynumber: 3.0 Consensus size: 16
37596286 AACAGAAAAA
37596296 AAAGAAAAAGAAAAGG
1 AAAGAAAAAGAAAAGG
*
37596312 AAAGAAATAGAAATA-G
1 AAAGAAAAAGAAA-AGG
37596328 AAAGAAAAAGAAAAGG
1 AAAGAAAAAGAAAAGG
37596344 GAAAATGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 1 0.04
16 26 0.93
17 1 0.04
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.04
Consensus pattern (16 bp):
AAAGAAAAAGAAAAGG
Found at i:37596324 original size:22 final size:21
Alignment explanation
Indices: 37596290--37596330 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
37596280 ACAAGCAACA
37596290 GAAAAAAAAGAAAAAGAAAAG
1 GAAAAAAAAGAAAAAGAAAAG
* *
37596311 GAAAGAAATAGAAATAGAAA
1 GAAA-AAAAAGAAAAAGAAA
37596331 GAAAAAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.05
Consensus pattern (21 bp):
GAAAAAAAAGAAAAAGAAAAG
Found at i:37596777 original size:45 final size:47
Alignment explanation
Indices: 37596701--37596795 Score: 124
Period size: 45 Copynumber: 2.1 Consensus size: 47
37596691 GGGGCATTAC
* * * *
37596701 ACTAAATAATAGATTAAATTATATAATATTTATTA-TAATTTTTTAAT
1 ACTAAATAATAGACTAAATTACATAACATTTATTATTAATTGTTT-AT
37596748 ACTAAAT-ATA-ACTAAATTACATAACATTTATTATTAATTGTTTAT
1 ACTAAATAATAGACTAAATTACATAACATTTATTATTAATTGTTTAT
37596793 ACT
1 ACT
37596796 TAGTTAAAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
45 25 0.58
46 11 0.26
47 7 0.16
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (47 bp):
ACTAAATAATAGACTAAATTACATAACATTTATTATTAATTGTTTAT
Found at i:37597365 original size:27 final size:27
Alignment explanation
Indices: 37597335--37597394 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
37597325 TTTAAATTTC
*
37597335 ATAAAAAATCAAAAAAATA-GAA-AAATA
1 ATAAAAAA-C-AAAAAATACAAATAAATA
*
37597362 ATAAAAAACAATAAATACAAATAAATA
1 ATAAAAAACAAAAAATACAAATAAATA
37597389 ATAAAA
1 ATAAAA
37597395 GGAACATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 7 0.24
26 3 0.10
27 19 0.66
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.17
Consensus pattern (27 bp):
ATAAAAAACAAAAAATACAAATAAATA
Found at i:37600754 original size:36 final size:36
Alignment explanation
Indices: 37600712--37600784 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
37600702 CTTCTTCATG
* *
37600712 GACAAGACATTAGCAAAATGAAGTTCTATGAGTACT
1 GACAAGACATTAACAAAATGAAGTTCTATGAGCACT
*
37600748 GACAAGACATTAACAAAATGAAGTTCTGTGAGCACT
1 GACAAGACATTAACAAAATGAAGTTCTATGAGCACT
37600784 G
1 G
37600785 CATTTTTGGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (36 bp):
GACAAGACATTAACAAAATGAAGTTCTATGAGCACT
Found at i:37604888 original size:27 final size:27
Alignment explanation
Indices: 37604857--37605034 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37604847 TAAATTGTAC
37604857 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
37604884 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37604910 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
37604938 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
37604966 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
37604993 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
37605020 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37605035 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:37604971 original size:82 final size:81
Alignment explanation
Indices: 37604858--37605013 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37604848 AAATTGTACA
* *
37604858 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
37604922 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
37604939 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
37605004 TGCGAGTTGA
65 TGCGAATTGA
37605014 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:37605025 original size:82 final size:81
Alignment explanation
Indices: 37604854--37605034 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
37604844 GATTAAATTG
* *
37604854 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
37604919 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
37604935 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
37604999 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
37605017 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
37605035 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:37607025 original size:3 final size:3
Alignment explanation
Indices: 37607017--37607048 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
37607007 GTTTTGTTTT
*
37607017 ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
37607049 TTATTATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:37607055 original size:3 final size:3
Alignment explanation
Indices: 37607049--37607082 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
37607039 TAATAATAAT
*
37607049 TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
37607083 ATAATACATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:37615280 original size:43 final size:43
Alignment explanation
Indices: 37615224--37615305 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
37615214 CACGCCTGTG
* ***
37615224 TGGCCAGGTCGTGTGCTTCACACGACCAAGAGACACGTCTATA
1 TGGCCAGGCCGTGTGAAGCACACGACCAAGAGACACGTCTATA
* *
37615267 TGGCTAGGCCGTGTGAAGCACACGGCCAAGAGACACGTC
1 TGGCCAGGCCGTGTGAAGCACACGACCAAGAGACACGTC
37615306 CATGTCTCAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.26, C:0.28, G:0.29, T:0.17
Consensus pattern (43 bp):
TGGCCAGGCCGTGTGAAGCACACGACCAAGAGACACGTCTATA
Found at i:37616517 original size:7 final size:7
Alignment explanation
Indices: 37616505--37616535 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
37616495 AAACCACGTC
37616505 TATCTCA
1 TATCTCA
37616512 TATCTCA
1 TATCTCA
37616519 TATCTCA
1 TATCTCA
37616526 TATCTCA
1 TATCTCA
37616533 TAT
1 TAT
37616536 AGATGCTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.45
Consensus pattern (7 bp):
TATCTCA
Found at i:37622259 original size:265 final size:264
Alignment explanation
Indices: 37621507--37622424 Score: 997
Period size: 265 Copynumber: 3.5 Consensus size: 264
37621497 TAAAACTTTG
* * *
37621507 GTTGAAGATGTGAAAAGCAACA-GAAGGTTCCGTTAGTATTATGTTAAGGGAAAATACATAAATA
1 GTTGAACATGTGAAAAGCAA-AGGAAGGTTCCCTCAGTATTATGTTAAGGGAAAATACATAAATA
* * * * * **
37621571 CACCACATAAAGGATTAGGAATTATTACCCTTCTAAAGCAAGAACAACTGAAAAAAAAAAGAGAT
65 CACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTG--GTAAAAAA-AGAT
* * * * * * * *
37621636 TAGAATAATATTTTTAATGAACAACGTGAAGGCATTTATGTC-CTAGACTATAAATCATGCTTGC
127 TAGAATAAAATTTATAATGATCAACGTGAAGGCATGTATGTCTC-GGGCTATAAATCGTGCTTCC
* * * ** * *
37621700 ACAACATTTGGTCTCAACAAGTTATCAATA-TGTAATTTGATTA-GTAAAAATATGTTATTCTTC
191 ACAACATTT-GCCTCAAAAAGTTATCAATACT-TAATTTCA-TAGGTGTAATTACGTTATTCTTC
* *
37621763 CCTCAAATTTCG
253 ACTCAAATTTCA
* * * *
37621775 GTTGAACATGTGAAATGCAAAGGGAGGTTCCCTCAGTATTATGTTAAGGGCAAATACGTAAATAC
1 GTTGAACATGTGAAAAGCAAAGGAAGGTTCCCTCAGTATTATGTTAAGGGAAAATACATAAATAC
* * * * *
37621840 ACCACATAAATTATGATGAATCATT-GCCTTCTGGAGCAACAACAACTAGTAAAAAAAGATTAGA
66 ACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGTAAAAAAAGATTAGA
** * * * * * * *
37621904 GCAAGATTTGTAATGATCAATGTAAAGGAACGTATGTCTCGGGATATAAATCGTGCTTCCACAAC
131 ATAAAATTTATAATGATCAACGTGAAGGCATGTATGTCTCGGGCTATAAATCGTGCTTCCACAAC
* * * *
37621969 ATTTGACCTCAAAAAGTTGTCAATACTTAATTTCACAGGTGTAATTACATTATTCTTCGCTCAAA
196 ATTTG-CCTCAAAAAGTTATCAATACTTAATTTCATAGGTGTAATTACGTTATTCTTCACTCAAA
37622034 TTTCA
260 TTTCA
* * * *
37622039 GTTGAACATGTGAAAAGCAAAGCAAGGTTCTCTCAGTATTATGTTAAGGGTAAATATATAAATAC
1 GTTGAACATGTGAAAAGCAAAGGAAGGTTCCCTCAGTATTATGTTAAGGGAAAATACATAAATAC
* * * * * *
37622104 ATCGCATAAAGTATGAGGAATCATTACCCTTCTAGAGTAAGAACAACTGGCAAAAAAATATTAGA
66 ACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGTAAAAAAAGATTAGA
* * * *
37622169 ATAAAATTTATAATGATGAGCGTGAAGGCATGTATGTCTCGGGCTCTAAATCGTGCTTTCACAAC
131 ATAAAATTTATAATGATCAACGTGAAGGCATGTATGTCTCGGGCTATAAATCGTGCTTCCACAAC
* *
37622234 ATTTAGCCTCAAAAAGTTATCAATACTTAATTTCATAGATGTAATTACGTTCTTCTTCACTCAAA
196 ATTT-GCCTCAAAAAGTTATCAATACTTAATTTCATAGGTGTAATTACGTTATTCTTCACTCAAA
*
37622299 TTCCA
260 TTTCA
* * ** *
37622304 ATTGAACGTGTGAACAA-CAAAGGAAGGTTCCCTCAGTATTATGTTAAGGGAAAATATGTAAACA
1 GTTGAACATGTGAA-AAGCAAAGGAAGGTTCCCTCAGTATTATGTTAAGGGAAAATACATAAATA
* * * * *
37622368 CACTAC--AAAGTATGAGAAATTATTACCCTTTTAGAGCAACTACAACTGGTAAAAAAA
65 CACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGTAAAAAAA
37622425 TTGAAAGAAT
Statistics
Matches: 541, Mismatches: 101, Indels: 21
0.82 0.15 0.03
Matches are distributed among these distances:
263 46 0.09
264 187 0.35
265 210 0.39
266 3 0.01
267 19 0.04
268 76 0.14
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (264 bp):
GTTGAACATGTGAAAAGCAAAGGAAGGTTCCCTCAGTATTATGTTAAGGGAAAATACATAAATAC
ACCACATAAAGTATGAGGAATCATTACCCTTCTAGAGCAACAACAACTGGTAAAAAAAGATTAGA
ATAAAATTTATAATGATCAACGTGAAGGCATGTATGTCTCGGGCTATAAATCGTGCTTCCACAAC
ATTTGCCTCAAAAAGTTATCAATACTTAATTTCATAGGTGTAATTACGTTATTCTTCACTCAAAT
TTCA
Found at i:37626226 original size:354 final size:353
Alignment explanation
Indices: 37625392--37626321 Score: 1320
Period size: 354 Copynumber: 2.6 Consensus size: 353
37625382 ACACGCGACA
* * *
37625392 ACACCATACAAAATGGTTAGTTAAAAAGCG-CTAGTTATGACTA-TTTCAATTTTAGAGACTAAA
1 ACACCATACAAAATGGTTAGTTAAAACG-GACTAGTTATGACTATTTTGATTTTTAG-GACTAAA
*
37625455 TTGAATAAAATGTGAAACTTTAAGGGGCATA-AAATAATGAAATTGAACTTATGCATACATATAA
64 TTGAATAAAATGTGAAACTTTAAGGGGCATACAAATAATGAAATTGAACTTATACATACATATAA
* *
37625519 TAGATTGTTATAAGATG-TTTGTAATTGATAAATTGAACTGAATTGTTATATGGATCGAGAATTG
129 TAGATTGTTATAAGATGTTTTG-AATTGATAAATTAAACTGAATTGTTATATAGATCGAGAATTG
* * * * *
37625583 AACCAATATGATCATGCCTTTTTATCTACTAATCTAGCAACTATTGAGAGATATGTCATTGTGCA
193 AACCAAGATGATAATGCCTTTTTATCTACTAATCGAGCAACTATTGAAAGATATGTCATTATGCA
37625648 TGGTCAGATAACACTACAACTCTTTGCAATGTATCCTGATGAGAAGATTAAGAAGTGCAAGTTTT
258 TGGTCAGATAACACTACAACTCTTTGCAATGTATCCTGATGAGAAGATTAAGAAGTGCAAGTTTT
*
37625713 TCGTAGGCCTCGAAAATAAAATGGAGGAGAG
323 TCATAGGCCTCGAAAATAAAATGGAGGAGAG
* * * *
37625744 ACATCATACAAAATGGTTAGTTAAAACGGACTAGTTATGTCTATTTGGATTTTTGGGACTAAATT
1 ACACCATACAAAATGGTTAGTTAAAACGGACTAGTTATGACTATTTTGATTTTTAGGACTAAATT
37625809 GAATAAAATGTGAAACTTTAAGGGGCATACAAATAATGAAATTGAACTTATACATACATATAATA
66 GAATAAAATGTGAAACTTTAAGGGGCATACAAATAATGAAATTGAACTTATACATACATATAATA
* * *
37625874 GATTGTTGTAAGATGTTTTGAATTGATAAATCAAACTGAATTGTTATATAGATCGGGAATTGAAC
131 GATTGTTATAAGATGTTTTGAATTGATAAATTAAACTGAATTGTTATATAGATCGAGAATTGAAC
** * * ** * * *
37625939 CAAGATGATAATGTTTTTTTTATCTACTAGTCGAGTAGTTGTTGAAAGATATGTCGTTATGCTTG
196 CAAGATGATAATG-CCTTTTTATCTACTAATCGAGCAACTATTGAAAGATATGTCATTATGCATG
* * *
37626004 GTTAGATTATACTACAACTCTTTGCAGA-GTATCCTGATGAGAAGATTAAGAAGTGCACA-TTTT
260 GTCAGATAACACTACAACTCTTTGCA-ATGTATCCTGATGAGAAGATTAAGAAGTGCA-AGTTTT
* *
37626067 TCATA-GCCTCGCAAATAAAATGGATGAGAG
323 TCATAGGCCTCGAAAATAAAATGGAGGAGAG
* *
37626097 ACACCATACAAAATGGTTAGTTAAAACGGACTTGTTATGACTATTTTGATTTTTAAGGACTAAAC
1 ACACCATACAAAATGGTTAGTTAAAACGGACTAGTTATGACTATTTTGATTTTT-AGGACTAAAT
* * * *
37626162 TGAATAAAATGTGAAACTTTAAGAGGCATACGAATAATAAAATTGAA-TTAATACATATATATAA
65 TGAATAAAATGTGAAACTTTAAGGGGCATACAAATAATGAAATTGAACTT-ATACATACATATAA
* * *
37626226 TATATTGTTATAAGATGTTTGGAATTGATAAATTAAACTGAATTGTTATATAGATCAAGAATTGA
129 TAGATTGTTATAAGATGTTTTGAATTGATAAATTAAACTGAATTGTTATATAGATCGAGAATTGA
* *
37626291 ACCAAGATGATCAT-ACTTTTATATCTACTAA
194 ACCAAGATGATAATGCCTTTT-TATCTACTAA
37626322 GCTAACAGAT
Statistics
Matches: 515, Mismatches: 53, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
351 1 0.00
352 80 0.16
353 192 0.37
354 240 0.47
355 2 0.00
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (353 bp):
ACACCATACAAAATGGTTAGTTAAAACGGACTAGTTATGACTATTTTGATTTTTAGGACTAAATT
GAATAAAATGTGAAACTTTAAGGGGCATACAAATAATGAAATTGAACTTATACATACATATAATA
GATTGTTATAAGATGTTTTGAATTGATAAATTAAACTGAATTGTTATATAGATCGAGAATTGAAC
CAAGATGATAATGCCTTTTTATCTACTAATCGAGCAACTATTGAAAGATATGTCATTATGCATGG
TCAGATAACACTACAACTCTTTGCAATGTATCCTGATGAGAAGATTAAGAAGTGCAAGTTTTTCA
TAGGCCTCGAAAATAAAATGGAGGAGAG
Found at i:37626482 original size:147 final size:147
Alignment explanation
Indices: 37626212--37626498 Score: 382
Period size: 147 Copynumber: 2.0 Consensus size: 147
37626202 AATTGAATTA
* * * * *
37626212 ATACATATATATAATATATTGTTATAAGATGTTTGGAATTGATAAATTAAACTGAATTGTTATAT
1 ATACATACATACAATAGATTGTTATAAGATGTTTGGAATTGATAAATCAAACTGAATTGTTATAC
*
37626277 AGATCAAGAATTGAACCAAGATGATCATACTTTTATATCTACTAAGCTAACAGATGTTGAGAGAT
66 AAATCAAGAATTGAACCAAGATGATCATACTTTTATATCTACTAAGCTAACAGATGTTGAGAGAT
37626342 ATGTCATTGTTGAACTG
131 ATGTCATTGTTGAACTG
* *
37626359 ATACATACATACAATAGATT-TGTATAAGATGTTTGGAATTGATAAATCGAACT-AAGTTTTTAT
1 ATACATACATACAATAGATTGT-TATAAGATGTTTGGAATTGATAAATCAAACTGAA-TTGTTAT
** * * ** * *
37626422 ACAAATCGGGAATTGAACCAAGGTGATCTTGGTTTTATATCTACTAATGC-AGCAGTTGTTGAGA
64 ACAAATCAAGAATTGAACCAAGATGATCATACTTTTATATCTACTAA-GCTAACAGATGTTGAGA
37626486 GATATGTCATTGT
128 GATATGTCATTGT
37626499 GCATAGTAAA
Statistics
Matches: 121, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
146 3 0.02
147 116 0.96
148 2 0.02
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (147 bp):
ATACATACATACAATAGATTGTTATAAGATGTTTGGAATTGATAAATCAAACTGAATTGTTATAC
AAATCAAGAATTGAACCAAGATGATCATACTTTTATATCTACTAAGCTAACAGATGTTGAGAGAT
ATGTCATTGTTGAACTG
Found at i:37628194 original size:147 final size:147
Alignment explanation
Indices: 37627927--37628221 Score: 468
Period size: 147 Copynumber: 2.0 Consensus size: 147
37627917 TTTAGACAAC
* * *
37627927 AAGTGTTATCGCTGATGTGAGTAAAAGATATGCAAAATATATTTCTTAAAATTTCGTATAAAAAA
1 AAGTGTTATCGCTGATGTGAGTAAAAAATATGCAAAATATATTTATTAAAATTTCATATAAAAAA
* *
37627992 TTAAAATATTATGAATCATAATATTATAAGTTTAAATCTTATCATAAATTATTTTTATTAATTTC
66 TTAAAAGATTATGAATCATAATATAATAAGTTTAAATCTTATCATAAATTATTTTTATTAATTTC
*
37628057 ATATATAAATATAAAAA
131 ATATATAAACATAAAAA
* *
37628074 AAGTGTTATCGTTGATGTGAGTAAAAAATTATGTAAAATATATTTATTAAAATTTCATATAAAAA
1 AAGTGTTATCGCTGATGTGAGTAAAAAA-TATGCAAAATATATTTATTAAAATTTCATATAAAAA
*
37628139 CA-TAAAAGATTATGAATCATAATA-AATAAGTTTAAATCTTATCATAATTTATTTTTATTAATT
65 -ATTAAAAGATTATGAATCATAATATAATAAGTTTAAATCTTATCATAAATTATTTTTATTAATT
*
37628202 TTATATATAAACATAAAAA
129 TCATATATAAACATAAAAA
37628221 A
1 A
37628222 TACTCCTAAA
Statistics
Matches: 136, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
147 81 0.60
148 54 0.40
149 1 0.01
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.40
Consensus pattern (147 bp):
AAGTGTTATCGCTGATGTGAGTAAAAAATATGCAAAATATATTTATTAAAATTTCATATAAAAAA
TTAAAAGATTATGAATCATAATATAATAAGTTTAAATCTTATCATAAATTATTTTTATTAATTTC
ATATATAAACATAAAAA
Found at i:37628858 original size:103 final size:103
Alignment explanation
Indices: 37628684--37628875 Score: 282
Period size: 103 Copynumber: 1.9 Consensus size: 103
37628674 TCCTATTCTG
* *
37628684 AGTACAATGCTGATTTTTCCATTACTTGTATTCTGCTACCTTGAAGTCCCTGTTGTGTCTTTATT
1 AGTACAATGCTGATTTTTCCATTACTTGTATTCTACTACCTTGAAGTCCATGTTGTGTCTTTATT
* *
37628749 GCCATATATGCTTTTGTCATAAGATTTTTTCTATTTTA
66 GCCATATATGCTATTATCATAAGATTTTTTCTATTTTA
*
37628787 AGTACAATGCTGATTTTTCCATTGA-TTGTATTCTACTAGCC-TG-AGCTTCATGTTGTGTCTTT
1 AGTACAATGCTGATTTTTCCATT-ACTTGTATTCTACTA-CCTTGAAG-TCCATGTTGTGTCTTT
*
37628849 ATTGTCATATATGCTATTATCATAAGA
63 ATTGCCATATATGCTATTATCATAAGA
37628876 ATTCTCTGGT
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
102 2 0.03
103 75 0.94
104 3 0.04
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.46
Consensus pattern (103 bp):
AGTACAATGCTGATTTTTCCATTACTTGTATTCTACTACCTTGAAGTCCATGTTGTGTCTTTATT
GCCATATATGCTATTATCATAAGATTTTTTCTATTTTA
Found at i:37629035 original size:49 final size:49
Alignment explanation
Indices: 37628982--37629082 Score: 139
Period size: 49 Copynumber: 2.1 Consensus size: 49
37628972 TAAGGCCTTA
* *
37628982 TTTATCATTATGTCTATCCCTTTATAGCTTTTACTTCTTTCTTGTATTT
1 TTTATCATTATGTCCATCCCTTGATAGCTTTTACTTCTTTCTTGTATTT
* ** * *
37629031 TTTATCATTATGTCCGTGGCTTGCTAGTTTTTACTTCTTTCTTGTATTT
1 TTTATCATTATGTCCATCCCTTGATAGCTTTTACTTCTTTCTTGTATTT
37629080 TTT
1 TTT
37629083 TGTTCTCTCT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.14, C:0.17, G:0.10, T:0.59
Consensus pattern (49 bp):
TTTATCATTATGTCCATCCCTTGATAGCTTTTACTTCTTTCTTGTATTT
Found at i:37631977 original size:12 final size:12
Alignment explanation
Indices: 37631960--37631993 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
37631950 ATTTGATGAT
37631960 TCAATATTTTGC
1 TCAATATTTTGC
37631972 TCAATATTTTGC
1 TCAATATTTTGC
37631984 TCAATATTTT
1 TCAATATTTT
37631994 TTAGATCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.26, C:0.15, G:0.06, T:0.53
Consensus pattern (12 bp):
TCAATATTTTGC
Found at i:37636869 original size:43 final size:43
Alignment explanation
Indices: 37636821--37636902 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
37636811 CTACTAATTG
* *
37636821 CAAATATATTGTACAT-TCACAACCCATTGGCAGATTTTACTTA
1 CAAATATATTGTACATCT-ACAACCCAATGGCAAATTTTACTTA
* *
37636864 CAAATATGTTGTGCATCTACAACCCAATGGCAAATTTTA
1 CAAATATATTGTACATCTACAACCCAATGGCAAATTTTA
37636903 TCTGAGATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.97
44 1 0.03
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (43 bp):
CAAATATATTGTACATCTACAACCCAATGGCAAATTTTACTTA
Found at i:37636990 original size:44 final size:44
Alignment explanation
Indices: 37636870--37637009 Score: 145
Period size: 44 Copynumber: 3.2 Consensus size: 44
37636860 CTTACAAATA
* * *
37636870 TGTTGTGCATCTACAACCCAATGGCAAATTTTATCTGAGATATTT
1 TGTTGTGTATCCACAACCCAATGGAAAATTTTATCTGAGA-ATTT
* * * *
37636915 TGTTATGTATTCACAGCCCAATGGAAAATTTTATCTGTGAATTT
1 TGTTGTGTATCCACAACCCAATGGAAAATTTTATCTGAGAATTT
* * * * * *
37636959 TGTTGTGTATCCACAACCTAGTGGGAGATTTTATCTGCGAATCT
1 TGTTGTGTATCCACAACCCAATGGAAAATTTTATCTGAGAATTT
*
37637003 TGCTGTG
1 TGTTGTG
37637010 CACTTATAGC
Statistics
Matches: 78, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
44 45 0.58
45 33 0.42
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (44 bp):
TGTTGTGTATCCACAACCCAATGGAAAATTTTATCTGAGAATTT
Found at i:37655224 original size:7 final size:7
Alignment explanation
Indices: 37655212--37655265 Score: 83
Period size: 7 Copynumber: 7.9 Consensus size: 7
37655202 TTCAGGTTTA
37655212 TTAAAAT
1 TTAAAAT
37655219 TTAAAAT
1 TTAAAAT
37655226 TTAAAAT
1 TTAAAAT
37655233 TTAAAAT
1 TTAAAAT
37655240 TTAAAA-
1 TTAAAAT
37655246 TTAAAAT
1 TTAAAAT
*
37655253 ATAAAAT
1 TTAAAAT
*
37655260 ATAAAA
1 TTAAAA
37655266 AAAGAATATT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
6 6 0.13
7 39 0.87
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (7 bp):
TTAAAAT
Found at i:37655251 original size:20 final size:21
Alignment explanation
Indices: 37655212--37655265 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 21
37655202 TTCAGGTTTA
37655212 TTAAAATTTAAAATTTAAAAT
1 TTAAAATTTAAAATTTAAAAT
37655233 TTAAAATTTAAAA-TTAAAAT
1 TTAAAATTTAAAATTTAAAAT
* *
37655253 ATAAAATATAAAA
1 TTAAAATTTAAAA
37655266 AAAGAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 18 0.58
21 13 0.42
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TTAAAATTTAAAATTTAAAAT
Found at i:37655702 original size:27 final size:26
Alignment explanation
Indices: 37655645--37655704 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
37655635 AAGAATATAT
* * * *
37655645 ATTTTTAAATTTTAAGTTTTTTTGCA
1 ATTTTTAAAATTTAAATATTTTTCCA
37655671 ATTTTCTAAAATTTAAATATTTTTCCA
1 ATTTT-TAAAATTTAAATATTTTTCCA
*
37655698 TTTTTTA
1 ATTTTTA
37655705 CAAAATTCTC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (26 bp):
ATTTTTAAAATTTAAATATTTTTCCA
Found at i:37657243 original size:15 final size:15
Alignment explanation
Indices: 37657223--37657253 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
37657213 TATAAAAAGG
37657223 ATATAACCTAATATA
1 ATATAACCTAATATA
37657238 ATATAACCTAATATA
1 ATATAACCTAATATA
37657253 A
1 A
37657254 GTTTTTTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (15 bp):
ATATAACCTAATATA
Found at i:37658558 original size:11 final size:11
Alignment explanation
Indices: 37658542--37658582 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
37658532 CATATCTTCC
37658542 TTTTTTTTCTT
1 TTTTTTTTCTT
37658553 TTTTTTTTCTT
1 TTTTTTTTCTT
* *
37658564 TTCTTTATGCTT
1 TT-TTTTTTCTT
37658576 TTTTTTT
1 TTTTTTT
37658583 GGATTTGTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.02, C:0.10, G:0.02, T:0.85
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:37664862 original size:44 final size:44
Alignment explanation
Indices: 37664789--37665319 Score: 442
Period size: 44 Copynumber: 12.0 Consensus size: 44
37664779 TCAGTCTGCC
** *
37664789 TCACTACCAATATAAAAAGAC-AGAATCTGCTATTTTCAATCTACT
1 TCAC-ACCAATATAGGAAGACAAG-ATCTGCTATTTTCGATCTACT
* * * * *
37664834 TCACGCCAATACATGAAGATAAGATCTGCT-TTCTTTGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTATT-TTCGATCTACT
* * *
37664878 TCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTT-GATCCACT
1 TC-ACACCAATATAGGAAGACAAGATCTGCTAT-TTTCGATCTACT
* * * *
37664922 TC-CACCCAATATAGGAAGGCAGGATCTGTTATCTTCGATCTACT
1 TCACA-CCAATATAGGAAGACAAGATCTGCTATTTTCGATCTACT
* * *
37664966 TCACACCAATACATGAAGACAAGATCTGCT-TTCTTCGATCCACT
1 TCACACCAATATAGGAAGACAAGATCTGCTATT-TTCGATCTACT
* * * * *
37665010 TC-CTACCAATATAGGAAGACAGGAACTGCTATCTTCTATCCACT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTATTTTCGATCTACT
* * *
37665054 TC-CTACCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTATTTTCGATCTACT
* * * *
37665098 TCACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTATTTTCGATCTACT
* * *
37665142 TCACACCAATACATGAATACAAGATCTGCT-TTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTATT-TTCGATCTACT
* * *
37665186 TCGCCACCAATATGGGAAGACAAGATCTTC-ATCTTT-GAT-TCACT
1 TC-ACACCAATATAGGAAGACAAGATCTGCTAT-TTTCGATCT-ACT
* * *
37665230 T-ACTACCAATATAGGAAAACAGGATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTATTTTCGATCTACT
** * *
37665274 TCATGCCAATACATGAAGACAAGATCTGCT-TTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTATT-TTCGATCTACT
37665318 TC
1 TC
37665320 GCCACGCATC
Statistics
Matches: 398, Mismatches: 64, Indels: 49
0.78 0.13 0.10
Matches are distributed among these distances:
42 3 0.01
43 52 0.13
44 281 0.71
45 60 0.15
46 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (44 bp):
TCACACCAATATAGGAAGACAAGATCTGCTATTTTCGATCTACT
Found at i:37664977 original size:132 final size:132
Alignment explanation
Indices: 37664795--37665319 Score: 560
Period size: 132 Copynumber: 4.0 Consensus size: 132
37664785 TGCCTCACTA
** * * * * *
37664795 CCAATATAAAAAGACAGAATCTGCTATTTTCAATCTACTTCACGCCAATACATGAAGATAAGATC
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATC
* * *
37664860 TGCTTTCTTTGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTTGATCCACTTC
66 TGCTATCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCTATCTTTGATCCACTTC
37664924 CAC
130 CAC
* *
37664927 CCAATATAGGAAGGCAGGATCTGTTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATC
* * * * *
37664992 TGCTTTCTTCGATCCACTTCCTACCAATATAGGAAGACAGGAACTGCTATCTTCT-ATCCACTTC
66 TGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTT-TGATCCACTTC
37665056 CTA-
130 C-AC
* *
37665059 CCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATC
* * * * * * *
37665124 TGCTATCTTCGATCTACTTCACACCAATACATGAATACAAGATCTGCTTTCTTCGATCTACTTCG
66 TGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTTTGATCCACTTC-
37665189 C-C
130 CAC
* * * * * * * *
37665191 ACCAATATGGGAAGACAAGATCTTC-ATCTTTGAT-TCACTT-ACTACCAATATAGGAAAACAGG
1 -CCAATATAGGAAGACAGGATCTGCTATCTTCGATCT-ACTTCAC-ACCAATACATGAAGACAAG
*** * * * * *
37665253 ATCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
63 ATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTTTGATCCACT
37665318 TC
128 TC
37665320 GCCACGCATC
Statistics
Matches: 340, Mismatches: 44, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
131 26 0.08
132 291 0.86
133 23 0.07
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (132 bp):
CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATC
TGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTTTGATCCACTTCC
AC
Found at i:37665145 original size:176 final size:176
Alignment explanation
Indices: 37664865--37665319 Score: 621
Period size: 176 Copynumber: 2.6 Consensus size: 176
37664855 AGATCTGCTT
* * * * * * *
37664865 TCTTTGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTTGATCCACTTCCAC-C
1 TCTTTGATCCACTT-ACTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTT-CACGC
* * * * *
37664928 CAATATAGGAAGGCAGGATCTGTTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCT
64 CAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCT
* *
37664993 GCTTTCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGAACTGCTA
129 GCTTTCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGAACTGC-A
* *
37665041 TCTTCT-ATCCACTTCCTACCAATATAGGAAGACAGGATTTGCTATCTTCGATCTACTTCACGCC
1 TCTT-TGATCCACTTACTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCC
*
37665105 AATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAATACAAGATCTG
65 AATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTG
* * * *
37665170 CTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTTCA
130 CTTTCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGAACTGCA
* * *
37665217 TCTTTGATTCACTTACTACCAATATAGGAAAACAGGATCTGCTATCTTCGATCTACTTCATGCCA
1 TCTTTGATCCACTTACTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCA
*
37665282 ATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
66 ATACATGAAGACAAGATCTGCTATCTTCGATCTACTTC
37665320 GCCACGCATC
Statistics
Matches: 248, Mismatches: 26, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
175 27 0.11
176 198 0.80
177 23 0.09
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (176 bp):
TCTTTGATCCACTTACTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCA
ATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGC
TTTCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGAACTGCA
Found at i:37665367 original size:111 final size:111
Alignment explanation
Indices: 37665215--37665435 Score: 343
Period size: 111 Copynumber: 2.0 Consensus size: 111
37665205 ACAAGATCTT
* * * *
37665215 CATCTTTGATTCACTTACTACCAATATAGGAAAACAGGATCTGCTATCTTCGATCTACTTCATGC
1 CATCTTCGATCCACTTACTACCAATATAGGAAAACAAGATCTGCTATCTTCGATCTACTTCACGC
37665280 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACG
66 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACG
* * *
37665326 CATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTATTTCACGC
1 CATCTTCGATCCACTTACTACCAATATAGGAAAACAAGATCTGCTATCTTCGATCTACTTCACGC
* * * *
37665391 CAATACATGAAGGCAGGATCTGCTTTCTTTGATCTACTTTGCCAC
66 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCAC
37665436 CAATATGGGA
Statistics
Matches: 99, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
111 99 1.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (111 bp):
CATCTTCGATCCACTTACTACCAATATAGGAAAACAAGATCTGCTATCTTCGATCTACTTCACGC
CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACG
Found at i:37665394 original size:44 final size:43
Alignment explanation
Indices: 37665327--37665508 Score: 186
Period size: 44 Copynumber: 4.1 Consensus size: 43
37665317 TTCGCCACGC
* *
37665327 ATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTATTTCC-ACCAATATAGGAAGACAAGATCTGCT
* * * * *
37665371 ATCTTCGATCTATTTCACGCCAATACATGAAGGCAGGATCTGCT
1 ATCTTCGATCTATTTC-CACCAATATAGGAAGACAAGATCTGCT
* * * *
37665415 TTCTTTGATCTACTTTGCCACCAATATGGGAAGACAAGATCTAC-
1 ATCTTCGATCTA-TTT-CCACCAATATAGGAAGACAAGATCTGCT
* * *
37665459 ATCTTCGATCCACTTCCTACCAATATAGGAAGACATGATCTGCT
1 ATCTTCGATCTATTTCC-ACCAATATAGGAAGACAAGATCTGCT
37665503 ATCTTC
1 ATCTTC
37665509 ACGCCAATAC
Statistics
Matches: 110, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
42 2 0.02
43 24 0.22
44 60 0.55
45 23 0.21
46 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (43 bp):
ATCTTCGATCTATTTCCACCAATATAGGAAGACAAGATCTGCT
Found at i:37665464 original size:155 final size:154
Alignment explanation
Indices: 37665173--37665474 Score: 337
Period size: 155 Copynumber: 1.9 Consensus size: 154
37665163 AGATCTGCTT
* * * *
37665173 TCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTTCATCTTTGATTCACTTACTACCA
1 TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGATCTGCATCTTCGATTCACTTACTACCA
* *
37665238 ATATAGGAAAACAGGATCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGC
66 ATACAGGAAAACAGGATCTGCTATCTTCGATCTACTT-ATGCCAATACATGAAGACAAGATCTAC
* *
37665303 TTTCTTCGATCTACTTCGCCACGCA
130 TATCTTCGATCCACTTCGCCACGCA
* * *
37665328 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAAGATCTGCTATCTTCGA-TCTATTTCAC-G
1 TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGATCTGC-ATCTTCGATTC-ACTT-ACTA
* ** * * *
37665390 CCAATACATGAAGGCAGGATCTGCTTTCTTTGATCTACTT-TGCCACCA-ATATGGGAAGACAAG
63 CCAATACAGGAAAACAGGATCTGCTATCTTCGATCTACTTATGCCA--ATACAT--GAAGACAAG
37665453 ATCTAC-ATCTTCGATCCACTTC
124 ATCTACTATCTTCGATCCACTTC
37665475 CTACCAATAT
Statistics
Matches: 123, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
153 5 0.04
154 29 0.24
155 73 0.59
156 16 0.13
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (154 bp):
TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGATCTGCATCTTCGATTCACTTACTACCA
ATACAGGAAAACAGGATCTGCTATCTTCGATCTACTTATGCCAATACATGAAGACAAGATCTACT
ATCTTCGATCCACTTCGCCACGCA
Found at i:37665500 original size:88 final size:89
Alignment explanation
Indices: 37665345--37665507 Score: 213
Period size: 88 Copynumber: 1.8 Consensus size: 89
37665335 TCCACTTCCT
* * * * * *
37665345 ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCTATTTCACGCCAATACATGAAGGCAGGAT
1 ACCAATATAGGAAGACAAGATCTACTATCTTCGATCCACTTCACACCAATACAGGAAGACAGGAT
*
37665410 CTGCTTTCTTTGATCTACTTTGCC
66 CTGCTATCTTTGATCTACTTTGCC
* * *
37665434 ACCAATATGGGAAGACAAGATCTAC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACATGA
1 ACCAATATAGGAAGACAAGATCTACTATCTTCGATCCACTTCAC-ACCAATACAGGAAGACAGGA
37665497 TCTGCTATCTT
65 TCTGCTATCTT
37665508 CACGCCAATA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
87 1 0.02
88 39 0.62
89 23 0.37
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (89 bp):
ACCAATATAGGAAGACAAGATCTACTATCTTCGATCCACTTCACACCAATACAGGAAGACAGGAT
CTGCTATCTTTGATCTACTTTGCC
Found at i:37666367 original size:25 final size:26
Alignment explanation
Indices: 37666339--37666387 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
37666329 GTGTCTTGAA
37666339 AAGAA-AAAGATATT-CAAGAACAATG
1 AAGAATAAAG-TATTACAAGAACAATG
37666364 AAGAATAAAGTATTACAAGAACAA
1 AAGAATAAAGTATTACAAGAACAA
37666388 ACAAATTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.61, C:0.08, G:0.14, T:0.16
Consensus pattern (26 bp):
AAGAATAAAGTATTACAAGAACAATG
Found at i:37677598 original size:51 final size:51
Alignment explanation
Indices: 37677517--37677757 Score: 428
Period size: 51 Copynumber: 4.7 Consensus size: 51
37677507 AAGTGATAAG
* *
37677517 TACACTTATCTGATCAGTGACAAGTGACAAGTGATAAATGGTAGCTTTAGC
1 TACACTTATCTGATCAGTGACAAGTAACAAGTGATAAGTGGTAGCTTTAGC
* *
37677568 TACACTTATCTGATTAGTGACAAGTAACAAGGGATAAGTGGTAGCTTTAGC
1 TACACTTATCTGATCAGTGACAAGTAACAAGTGATAAGTGGTAGCTTTAGC
*
37677619 TACACTTATCTGATCAGTGACAAGTAACAAGGGATAAGTGGTAGCTTTAGC
1 TACACTTATCTGATCAGTGACAAGTAACAAGTGATAAGTGGTAGCTTTAGC
37677670 TACACTTATCTGATCAGTGACAAGTAACAAGTGATAAGTGGTAGCTTTAGC
1 TACACTTATCTGATCAGTGACAAGTAACAAGTGATAAGTGGTAGCTTTAGC
*
37677721 TACACTTATCTGATCAGGGACAAGTAACAAGTGATAA
1 TACACTTATCTGATCAGTGACAAGTAACAAGTGATAA
37677758 ATGTGATCCG
Statistics
Matches: 183, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 183 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (51 bp):
TACACTTATCTGATCAGTGACAAGTAACAAGTGATAAGTGGTAGCTTTAGC
Found at i:37686008 original size:31 final size:33
Alignment explanation
Indices: 37685948--37686008 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
37685938 TATGGTTTAT
*
37685948 AATATTTTATATTTACTAGCATAAATTATTACA
1 AATATTTCATATTTACTAGCATAAATTATTACA
*
37685981 AATATTTCATATTTA-TAGTA-AAATTATT
1 AATATTTCATATTTACTAGCATAAATTATT
37686009 TAAATTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 8 0.31
32 4 0.15
33 14 0.54
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.48
Consensus pattern (33 bp):
AATATTTCATATTTACTAGCATAAATTATTACA
Found at i:37689009 original size:27 final size:27
Alignment explanation
Indices: 37688966--37689019 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
37688956 CGATGAGTCC
37688966 AGAATTTAAAATAATTA-TAAAAATTA
1 AGAATTTAAAATAATTAGTAAAAATTA
* *
37688992 AGAAGTTTAATATTATTATGTAAAAATT
1 AGAA-TTTAAAATAATTA-GTAAAAATT
37689020 CATCGTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 4 0.17
27 11 0.48
29 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (27 bp):
AGAATTTAAAATAATTAGTAAAAATTA
Found at i:37693250 original size:21 final size:21
Alignment explanation
Indices: 37693226--37693265 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
37693216 TTGTGATTTT
*
37693226 TCACTATGTAAGATGATGTAA
1 TCACTATGTAAGAGGATGTAA
37693247 TCACTATGTAAGAGGATGT
1 TCACTATGTAAGAGGATGT
37693266 GGATGGCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.33
Consensus pattern (21 bp):
TCACTATGTAAGAGGATGTAA
Found at i:37711988 original size:43 final size:43
Alignment explanation
Indices: 37711908--37712152 Score: 296
Period size: 43 Copynumber: 5.7 Consensus size: 43
37711898 TTTTTATGCT
* *
37711908 TTTAGCGGCGCTTTT-CCATAAATGCCGCTATAGACCAGGACC
1 TTTAGCGGCGCTTTTACCACAAACGCCGCTATAGACCAGGACC
*
37711950 TTTAGCGGCGCTTTTAGCACAAACGCCGCTATAGACCAGGACC
1 TTTAGCGGCGCTTTTACCACAAACGCCGCTATAGACCAGGACC
* * *
37711993 TTTAGCGGCGCTTTTAACACAAACGCCACTATAGACCAAGACC
1 TTTAGCGGCGCTTTTACCACAAACGCCGCTATAGACCAGGACC
** * * * * *
37712036 TTTAGAAGCACTTTT-CGAATAAACACCGCTATAGATCAGGACC
1 TTTAGCGGCGCTTTTAC-CACAAACGCCGCTATAGACCAGGACC
* * * *
37712079 TTTAGCAGCGCTTTTCCCACAAACGCCGCTATAGAGCAAGACC
1 TTTAGCGGCGCTTTTACCACAAACGCCGCTATAGACCAGGACC
* *
37712122 TTTAGCGGCACTTTTACCACAAACACCGCTA
1 TTTAGCGGCGCTTTTACCACAAACGCCGCTA
37712153 AAAACATATC
Statistics
Matches: 173, Mismatches: 27, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
42 15 0.09
43 157 0.91
44 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTACCACAAACGCCGCTATAGACCAGGACC
Found at i:37712455 original size:78 final size:78
Alignment explanation
Indices: 37712370--37712532 Score: 326
Period size: 78 Copynumber: 2.1 Consensus size: 78
37712360 TCTTAAGTAA
37712370 AAATAAAAATTTAGAATCAAAACTAAAATAAATAATACATATTCAAGGTAATAAAACATACAATG
1 AAATAAAAATTTAGAATCAAAACTAAAATAAATAATACATATTCAAGGTAATAAAACATACAATG
37712435 CATTTTCTTACTC
66 CATTTTCTTACTC
37712448 AAATAAAAATTTAGAATCAAAACTAAAATAAATAATACATATTCAAGGTAATAAAACATACAATG
1 AAATAAAAATTTAGAATCAAAACTAAAATAAATAATACATATTCAAGGTAATAAAACATACAATG
37712513 CATTTTCTTACTC
66 CATTTTCTTACTC
37712526 AAATAAA
1 AAATAAA
37712533 TAATACATTT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 85 1.00
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.29
Consensus pattern (78 bp):
AAATAAAAATTTAGAATCAAAACTAAAATAAATAATACATATTCAAGGTAATAAAACATACAATG
CATTTTCTTACTC
Found at i:37716853 original size:83 final size:81
Alignment explanation
Indices: 37716673--37716924 Score: 272
Period size: 83 Copynumber: 3.0 Consensus size: 81
37716663 CAACTTTTCC
* ** * *
37716673 TTTAATTAGTCAATGAAATAGCGCCATTTTGTTAAATTATTAATGTATTTTTTTGTGGCGTTTTT
1 TTTAATTCGTCAATGAAACGGCGCCATTTTGTTAAATT-TTAATATA-TTTTTTGCGGCG-TTTT
* *
37716738 ATAAAAAACGCCACTAAAA
63 ATACAAAACGCCACTAATA
* * *
37716757 TTTAATTCATCAATGAAACGGTGCCATTTTATTAAATTCTTAATATATTTTTTGCGGCGTTTGTA
1 TTTAATTCGTCAATGAAACGGCGCCATTTTGTTAAATT-TTAATATATTTTTTGCGGCGTTT-TA
37716822 TACAAAACGCCACTAATA
64 TACAAAACGCCACTAATA
* * * * * *
37716840 TTTATTTCGTCAATAAAACGGCGCCGTTTGGTTAAATTTTAA-ATGTATTTTTGCGGCGTTTTTT
1 TTTAATTCGTCAATGAAACGGCGCCATTTTGTTAAATTTTAATATAT-TTTTTGCGGCGTTTTAT
* *
37716904 ACCAAACGCCGCTAATGA
65 ACAAAACGCCACTAAT-A
37716922 TTT
1 TTT
37716925 CACTTTTAAA
Statistics
Matches: 143, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
81 19 0.13
82 25 0.17
83 60 0.42
84 39 0.27
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (81 bp):
TTTAATTCGTCAATGAAACGGCGCCATTTTGTTAAATTTTAATATATTTTTTGCGGCGTTTTATA
CAAAACGCCACTAATA
Found at i:37717064 original size:14 final size:14
Alignment explanation
Indices: 37717045--37717072 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37717035 ACATCATTAT
37717045 TAATATTATTTAAA
1 TAATATTATTTAAA
37717059 TAATATTATTTAAA
1 TAATATTATTTAAA
37717073 ATTTTGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATTATTTAAA
Found at i:37717625 original size:15 final size:15
Alignment explanation
Indices: 37717592--37717629 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
37717582 AGCCAACCCT
*
37717592 TAAA-CCATAATCCC
1 TAAATCCATAATCAC
37717606 T-AATCCATAATCAC
1 TAAATCCATAATCAC
37717620 TAAATCCATA
1 TAAATCCATA
37717630 TGTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCAC
Found at i:37717875 original size:14 final size:14
Alignment explanation
Indices: 37717856--37717959 Score: 63
Period size: 14 Copynumber: 7.3 Consensus size: 14
37717846 CTAGTTAATC
37717856 TAAACCCTAAACCA
1 TAAACCCTAAACCA
*
37717870 TAAACCCTTAACACA
1 TAAACCCTAAAC-CA
*
37717885 T-AACCTCTAAACCT
1 TAAACC-CTAAACCA
*
37717899 TAAACTCC--AACCTT
1 TAAAC-CCTAAACC-A
*
37717913 TAAACCATAAACCA
1 TAAACCCTAAACCA
37717927 T-AACCACTAAACCCA
1 TAAACC-CTAAA-CCA
* * *
37717942 TAATCCATAAACCT
1 TAAACCCTAAACCA
37717956 TAAA
1 TAAA
37717960 ATGGTAACAA
Statistics
Matches: 70, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
13 9 0.13
14 33 0.47
15 24 0.34
16 4 0.06
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:37717899 original size:21 final size:20
Alignment explanation
Indices: 37717870--37717939 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 20
37717860 CCCTAAACCA
37717870 TAAACCCTTAACACATAACCTC
1 TAAA-CCTTAA-ACATAACCTC
*
37717892 TAAACCTTAAAC-TCCAACCTT
1 TAAACCTTAAACAT--AACCTC
* *
37717913 TAAACCATAAACCATAACCAC
1 TAAACCTTAAA-CATAACCTC
37717934 TAAACC
1 TAAACC
37717940 CATAATCCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 1 0.03
20 2 0.05
21 31 0.77
22 5 0.12
23 1 0.03
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.21
Consensus pattern (20 bp):
TAAACCTTAAACATAACCTC
Found at i:37717942 original size:15 final size:14
Alignment explanation
Indices: 37717915--37717954 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
37717905 CCAACCTTTA
37717915 AACCATAAA-CCAT
1 AACCATAAACCCAT
37717928 AACCACTAAACCCAT
1 AACCA-TAAACCCAT
37717943 AATCCATAAACC
1 AA-CCATAAACC
37717955 TTAAAATGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.21
14 4 0.17
15 12 0.50
16 3 0.12
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (14 bp):
AACCATAAACCCAT
Found at i:37718290 original size:42 final size:41
Alignment explanation
Indices: 37718203--37718366 Score: 301
Period size: 41 Copynumber: 4.0 Consensus size: 41
37718193 ATTTTAAATC
*
37718203 CCTGAGCATTAGCGGCGCTTCCTAAAAAACGCCGCTAAAGG
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
*
37718244 CCTGAGCATTAGCGGCGCTTCCTCAAAAAACGCCGCTAAAGT
1 CCTGAGCATTAGCGGCGCTTCCTC-AAAAACGCCGCTAAAGG
37718286 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
37718327 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAG
1 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAG
37718367 CCCTCGAAAA
Statistics
Matches: 119, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
41 79 0.66
42 40 0.34
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.18
Consensus pattern (41 bp):
CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG
Found at i:37718342 original size:83 final size:82
Alignment explanation
Indices: 37718203--37718366 Score: 310
Period size: 83 Copynumber: 2.0 Consensus size: 82
37718193 ATTTTAAATC
37718203 CCTGAGCATTAGCGGCGCTTCCTAAAAAACGCCGCTAAAGGCCTGAGCATTAGCGGCGCTTCCTC
1 CCTGAGCATTAGCGGCGCTTCCTAAAAAACGCCGCTAAAGGCCTGAGCATTAGCGGCGCTTCCTC
37718268 AAAAAACGCCGCTAAAGT
66 -AAAAACGCCGCTAAAGT
*
37718286 CCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCTGAGCATTAGCGGCGCTTCCTC
1 CCTGAGCATTAGCGGCGCTTCCTAAAAAACGCCGCTAAAGGCCTGAGCATTAGCGGCGCTTCCTC
37718351 AAAAACGCCGCTAAAG
66 AAAAACGCCGCTAAAG
37718367 CCCTCGAAAA
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
82 16 0.20
83 64 0.80
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.18
Consensus pattern (82 bp):
CCTGAGCATTAGCGGCGCTTCCTAAAAAACGCCGCTAAAGGCCTGAGCATTAGCGGCGCTTCCTC
AAAAACGCCGCTAAAGT
Found at i:37718472 original size:39 final size:40
Alignment explanation
Indices: 37718424--37718517 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 40
37718414 GCGCTTTGTG
*
37718424 GAAAACGCCGCTAATGCT-TAT-TTATAGCGGCGTTTTCTA
1 GAAAACGCCGCTAATGCTCGATCTT-TAGCGGCGTTTTCTA
* *
37718463 GAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTTTA
1 GAAAACGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCTA
**
37718503 TCCAAACGCCGCTAA
1 -GAAAACGCCGCTAA
37718518 AAACGCCGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
39 17 0.37
40 16 0.35
41 13 0.28
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.30
Consensus pattern (40 bp):
GAAAACGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCTA
Found at i:37718523 original size:12 final size:12
Alignment explanation
Indices: 37718506--37718531 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37718496 TTTTTTATCC
37718506 AAACGCCGCTAA
1 AAACGCCGCTAA
37718518 AAACGCCGCTAA
1 AAACGCCGCTAA
37718530 AA
1 AA
37718532 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:37719500 original size:17 final size:17
Alignment explanation
Indices: 37719475--37719524 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
37719465 ATTTTCGTTT
*
37719475 ATAAAAATAAAAATATA
1 ATAAAAATAAAAAGATA
*
37719492 ATAATAATAAAAAGATA
1 ATAAAAATAAAAAGATA
*
37719509 A-AAGAAATAGAAAGAT
1 ATAA-AAATAAAAAGAT
37719525 TGAAATAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 2 0.07
17 26 0.93
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (17 bp):
ATAAAAATAAAAAGATA
Found at i:37720594 original size:45 final size:45
Alignment explanation
Indices: 37720360--37720750 Score: 327
Period size: 44 Copynumber: 8.9 Consensus size: 45
37720350 TTTTAATTCA
* ** * *
37720360 CTCCACTGCAACTTCAGGGAGATAGGA-TTAATAGCTTCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTG
* * * * * * *
37720404 TTCCATTCCAACTTCAAGGAGATAAGACTTGC-ATATTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTG
* * * * ** *
37720448 CCCCACTGTAACTTCAGGGGGATAAGGTTTATTA-CTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTG
* * * * * * *
37720492 CTCTATTGTAACTTCAGAGTGATAATG-TTTG-TAGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAA-GATTTGCTATCTTCAATCTG
* *
37720536 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTG
* * *
37720581 TTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTTTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTG
* * *
37720626 CTTCACTGCAACTTCAGGGAGATAAGACTTG-T-TGCTTCAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT-CTTCAATCTG
* * * *
37720670 TTCCACTGCAACTTCAGGAAGATAAGGTTTG--AT-AT-AATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTG
* *
37720711 CTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCA
1 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCA
37720751 GTCTCGATTT
Statistics
Matches: 273, Mismatches: 62, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
41 31 0.11
42 1 0.00
43 6 0.02
44 151 0.55
45 84 0.31
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTG
Found at i:37720859 original size:50 final size:49
Alignment explanation
Indices: 37720784--37722012 Score: 723
Period size: 50 Copynumber: 24.6 Consensus size: 49
37720774 GCCAGGAAAA
** * * *
37720784 TAAGATTCGATGTTGTAGCTTCAATCTATTTAATTGTAATGTCGGGGAGG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCGGGGAAG
* * * *
37720834 TAAGATTCGCTGTTGTAGCTTCAATCTAATTAACTGCAATGTTGGAGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCGGGGAAG
* * * *
37720884 CAAGATTCACTGTTGTAGCTTCAATCTTTTTAACAT-TAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATC-TTTTAAC-TGCAATGTCGGGGAAG
* ** * ** * * * *
37720934 CAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACCGCCAGAGATG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCGGGGAAG
*** * *
37720984 TAAGATTCATAGTTGTGGCTTCAATCTTTTTAATTGCAATGTC-GGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATC-TTTTAACTGCAATGTCGGGGAAG
* ** **** * *
37721033 AAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCACCAGGGAAA
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCGGGGAAG
* *
37721083 TAAGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTTTT-AACTGCAATGTCGGGGAAG
* * * ** * * * *
37721133 CAAAATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGTAG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCGGGGAAG
* * * * *
37721183 TAAGATTCACCGTTGTGGTTTCAATCTTTTAAATTACAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTTTT-AACTGCAATGTCGGGGAAG
* ** * ** * * *
37721233 CAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAC
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCGGGGAAG
* * * * * * *
37721283 TAAAATTCACCATTGTGGCTTCAATCTTTTAAATTGTAATGTCAGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTTTT-AACTGCAATGTCGGGGAAG
* ** ** * *
37721333 CAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCGGGGAAG
* * *
37721383 TAAGATTCGCCGTTGTGGCTTCAATCTTTTAAACTGTAATGTCGGGAAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTTTT-AACTGCAATGTCGGGGAAG
* * * **** **
37721433 TAAGATTCTCCGTTGTAGCTTCAAT-TTGTTCCACTACACCACCAAGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTT-TT-AACTGCAATGTCGGGGAAG
* * * * *
37721483 TAATATTCACCGTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTTTT-AACTGCAATGTCGGGGAAG
* **** **
37721533 CAAGATTCGCCGTTGTAGCTTCAATCTGTTCT-ACTGCACCACCAAGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TT-TAACTGCAATGTCGGGGAAG
* * * *
37721583 TAAGATTCGCCGTTGTCGCTTCAATATTTTTAATTGCAATGTCGGGAAAG
1 TAAGATTCGCCGTTGTAGCTTCAAT-CTTTTAACTGCAATGTCGGGGAAG
* * * ** ** * **
37721633 CAAAATTCGCCATTGTAGCTTCAATCTGTTCCACTGCACCGCCAAGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCGGGGAAG
* * * * *
37721683 TAATATTCACCGTTGTGGCTTAAATCTTTTAAATTGCAATGTCGGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTTTT-AACTGCAATGTCGGGGAAG
* ** ** **
37721733 TAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCG-CGAGGTTAG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCG-GGGAAG
* *
37721783 TAAGATTCGCCGTTGT-GACTTCAATCTTTTTAA-TTCTAATGTC-AGGAATG
1 TAAGATTCGCCGTTGTAG-CTTCAATC-TTTTAACTGC-AATGTCGGGGAA-G
* * * ** ** * * *
37721833 CAAGATTCACCATTGTAGCTTCAATCTATTCCACTGCACCGCCAGGGATG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TTTAACTGCAATGTCGGGGAAG
* * * * *
37721883 TAAGATTCACCGTTTTGGCTTCAATCTTTTAAATTGCAATGTCGGGGTAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTTTT-AACTGCAATGTCGGGGAAG
* * * * ** *
37721933 CAAGATTCGTCGTTATAGCTTTAATCTGTTCT-ACTGC-ACCTCTAGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCT-TT-TAACTGCAATGTC-GGGGAAG
* *
37721983 TAAGATTCGCCGTTGTGGCTTTAATCTTTT
1 TAAGATTCGCCGTTGTAGCTTCAATCTTTT
37722013 TAATTGCATC
Statistics
Matches: 877, Mismatches: 265, Indels: 76
0.72 0.22 0.06
Matches are distributed among these distances:
48 2 0.00
49 64 0.07
50 783 0.89
51 26 0.03
52 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (49 bp):
TAAGATTCGCCGTTGTAGCTTCAATCTTTTAACTGCAATGTCGGGGAAG
Found at i:37722019 original size:100 final size:100
Alignment explanation
Indices: 37720795--37722020 Score: 1559
Period size: 100 Copynumber: 12.3 Consensus size: 100
37720785 AAGATTCGAT
* * * * *
37720795 GTTGTAGCTTCAATCTATTT-AATTGTAATGTCGGGGAGGTAAGATTCGCTGTTGTAGCTTCAAT
1 GTTGTGGCTTCAATCT-TTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAAT
* * ** ** * *
37720859 CTAATT-AACTGCAATG-TTGGAGAAGCAAGATTCACT
65 CT-GTTCCACTGCACCGCCAGG-GAAGTAAGATTCACC
*
37720895 GTTGTAGCTTCAATCTTTTTAACATT--AATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAA
1 GTTGTGGCTTCAATC-TTTTAA-ATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAA
* * * **
37720958 TCTGTTCCACTACACCGCCAGAGATGTAAGATTCATA
64 TCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* *
37720995 GTTGTGGCTTCAATCTTTTTAATTGCAATGTC-GGGAAGAAAGATTCGCCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * *
37721059 TGTTCCACTGCACCACCAGGGAAATAAGATTCGCC
66 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* *
37721094 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAAATTCACCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* *
37721159 TGTTCCACTGCACTGCCAGGGTAGTAAGATTCACC
66 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* *
37721194 GTTGTGGTTTCAATCTTTTAAATTACAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * * *
37721259 TATTCCACTACACCGCCAGGGAACTAAAATTCACC
66 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* * *
37721294 ATTGTGGCTTCAATCTTTTAAATTGTAATGTCAGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
*
37721359 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCC
66 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* * * * * *
37721394 GTTGTGGCTTCAATCTTTTAAACTGTAATGTCGGGAAAGTAAGATTCTCCGTTGTAGCTTCAATT
1 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * * *
37721459 TGTTCCACTACACCACCAAGGAAGTAATATTCACC
66 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
*
37721494 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCAGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * * *
37721559 TGTTCTACTGCACCACCAAGGAAGTAAGATTCGCC
66 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* * * * * *
37721594 GTTGTCGCTTCAATATTTTTAATTGCAATGTCGGGAAAGCAAAATTCGCCATTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* *
37721659 TGTTCCACTGCACCGCCAAGGAAGTAATATTCACC
66 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* * *
37721694 GTTGTGGCTTAAATCTTTTAAATTGCAATGTCGGGGAAGTAAGATTCACCGTTGTAGCTTCAATC
1 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* ** *
37721759 TGTTCCACTGCACCGCGAGGTTAGTAAGATTCGCC
66 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* * * * *
37721794 GTTGTGACTTCAATCTTTTTAATT-CTAATGTC-AGGAATGCAAGATTCACCATTGTAGCTTCAA
1 GTTGTGGCTTCAATCTTTTAAATTGC-AATGTCGGGGAA-GCAAGATTCGCCGTTGTAGCTTCAA
* *
37721857 TCTATTCCACTGCACCGCCAGGGATGTAAGATTCACC
64 TCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* * * * *
37721894 GTTTTGGCTTCAATCTTTTAAATTGCAATGTCGGGGTAGCAAGATTCGTCGTTATAGCTTTAATC
1 GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
* * * *
37721959 TGTTCTACTGCACCTCTAGGGAAGTAAGATTCGCC
66 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
* *
37721994 GTTGTGGCTTTAATCTTTTTAATTGCA
1 GTTGTGGCTTCAATCTTTTAAATTGCA
37722021 TCCTTAGGGG
Statistics
Matches: 979, Mismatches: 135, Indels: 24
0.86 0.12 0.02
Matches are distributed among these distances:
98 3 0.00
99 101 0.10
100 865 0.88
101 7 0.01
102 3 0.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (100 bp):
GTTGTGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATC
TGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
Found at i:37755116 original size:63 final size:63
Alignment explanation
Indices: 37754988--37755108 Score: 163
Period size: 63 Copynumber: 1.9 Consensus size: 63
37754978 CTACCCGTGA
* * * *
37754988 GACTCCAATCTTAACTCAGTGAGTTACACGGTCTGGACATATGCCCATGTATCTCACCTAAGT
1 GACTCAAATCTTAACTCAGTAAGTTACACGGTCTGGACACACGCCCATGTATCTCACCTAAGT
* * *
37755051 GACTCAAATCTTAACTCAGTAAGTTATA-GGGCTTGGACACACGCCCGTGTATCTCACC
1 GACTCAAATCTTAACTCAGTAAGTTACACGGTC-TGGACACACGCCCATGTATCTCACC
37755109 CTTGTGACCC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
62 3 0.06
63 47 0.94
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (63 bp):
GACTCAAATCTTAACTCAGTAAGTTACACGGTCTGGACACACGCCCATGTATCTCACCTAAGT
Found at i:37755752 original size:5 final size:5
Alignment explanation
Indices: 37755742--37755781 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
37755732 AGAAATAAGG
* *
37755742 AAATA AAATA AAAT- AAGTA AAATA CAATA AAATA AAATA A
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA A
37755782 TCGTTAAGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 3 0.10
5 27 0.90
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:37757000 original size:29 final size:29
Alignment explanation
Indices: 37756943--37756999 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
37756933 TAGTCTAATA
* *
37756943 TGCAATTCTATACATGTATTTTGATTTTG
1 TGCAATTCTATACATGAAGTTTGATTTTG
*
37756972 TGCAATTTTATACATGAAAGTTTGATTT
1 TGCAATTCTATACATG-AAGTTTGATTT
37757000 GATCCAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.49
Consensus pattern (29 bp):
TGCAATTCTATACATGAAGTTTGATTTTG
Found at i:37757402 original size:17 final size:18
Alignment explanation
Indices: 37757380--37757414 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37757370 ATAGATGTAA
37757380 TTTAAAT-TCTAATTATT
1 TTTAAATGTCTAATTATT
*
37757397 TTTAAATGTGTAATTATT
1 TTTAAATGTCTAATTATT
37757415 ACAACTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (18 bp):
TTTAAATGTCTAATTATT
Found at i:37764663 original size:9 final size:9
Alignment explanation
Indices: 37764646--37764682 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
37764636 TGAGTTTTCG
37764646 AATTCGAAT
1 AATTCGAAT
*
37764655 AACTCGAAT
1 AATTCGAAT
37764664 AATTCGAAT
1 AATTCGAAT
37764673 AATTCGAAT
1 AATTCGAAT
37764682 A
1 A
37764683 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:37765607 original size:16 final size:16
Alignment explanation
Indices: 37765586--37765638 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
37765576 TTAAAATTTA
37765586 ACTCGAATTCCATCTC
1 ACTCGAATTCCATCTC
* *
37765602 ACTCG-ACTCGAT-TC
1 ACTCGAATTCCATCTC
*
37765616 GATTCGAATTCCATCTC
1 -ACTCGAATTCCATCTC
37765633 ACTCGA
1 ACTCGA
37765639 CTCGATTCGA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
14 2 0.07
15 9 0.32
16 15 0.54
17 2 0.07
ACGTcount: A:0.25, C:0.34, G:0.11, T:0.30
Consensus pattern (16 bp):
ACTCGAATTCCATCTC
Found at i:37765626 original size:31 final size:31
Alignment explanation
Indices: 37765588--37765648 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
37765578 AAAATTTAAC
37765588 TCGAATTCCATCTCACTCGACTCGATTCGAT
1 TCGAATTCCATCTCACTCGACTCGATTCGAT
37765619 TCGAATTCCATCTCACTCGACTCGATTCGA
1 TCGAATTCCATCTCACTCGACTCGATTCGA
37765649 GAAAACTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.33, G:0.13, T:0.31
Consensus pattern (31 bp):
TCGAATTCCATCTCACTCGACTCGATTCGAT
Found at i:37767231 original size:19 final size:19
Alignment explanation
Indices: 37767158--37767234 Score: 55
Period size: 19 Copynumber: 3.7 Consensus size: 19
37767148 AGCTACATCG
37767158 TTTATAATTTATTTTGTTTAA
1 TTTATAATTTATTTT-TTT-A
*
37767179 TATTAGTATATTTATTTTTAATA
1 T-TTA-TA-ATTTATTTTT-TTA
** **
37767202 CATATGTTTTATTTTTTTA
1 TTTATAATTTATTTTTTTA
37767221 TTTATAATTTATTT
1 TTTATAATTTATTT
37767235 ATGCTTTCTA
Statistics
Matches: 42, Mismatches: 10, Indels: 10
0.68 0.16 0.16
Matches are distributed among these distances:
19 12 0.29
20 9 0.21
21 2 0.05
22 5 0.12
23 4 0.10
24 10 0.24
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (19 bp):
TTTATAATTTATTTTTTTA
Found at i:37769222 original size:4 final size:4
Alignment explanation
Indices: 37769213--37769245 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
37769203 TTGAAGAATT
37769213 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
37769246 TGAAGTGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:37769709 original size:327 final size:326
Alignment explanation
Indices: 37769256--37770235 Score: 1762
Period size: 327 Copynumber: 3.0 Consensus size: 326
37769246 TGAAGTGTAG
* *
37769256 GATGCATTGCATGAATATGACGATGTCTGGTAAACATGCATGGGAAATTATGTGTTAGGAAGTAT
1 GATGCACTGCATGAATATGACGATGTGTGGTAAACATGCATGGGAAATTATGTGTTAGGAAGTAT
37769321 AATTCTATTAAGATTATAAGCAAAATCTATGTAGATATGTCCATTATGTTATTTGAGTGATGCAT
66 AATTCTATTAAGATTATAAGCAAAATCTATGTAGATATGTCCATTATGTTATTTGAGTGATGCAT
* *
37769386 GACTAAGTATGGTTGGTGATAAGGGGGTTCAGGCGGACTGTCGAGAAAGTATGTGATATAATGAC
131 GACTAAGTATGGTTGGTGATAAGGGGGTTCAGGCGGAGTGTCGAGAAAGTATGTGATACAATGAC
*
37769451 GGACCCCACGGTGGTGCTTTGATGACTTTCGCTAGGACAGTAAACATGAAGTCCAGTATGGTGAA
196 GGACCCCGCGGTGGTGCTTTGATGAC-TTCGCTAGGACAGTAAACATGAAGTCCAGTATGGTGAA
* *
37769516 ATGTAGTCCATCGAGACAATAAACACGAGAATCGCTGAGATAGTAAAAATGAGAAAGGCTAATGT
260 ATGTAGTCCATCGGGACCATAAACACGAGAATCGCTGAGATAGTAAAAATGAGAAAGGCTAATGT
37769581 GC
325 GC
*
37769583 GATGCACTGCATGAATATGATGATGTGTGGTAAACATGCATGGGAAATTATGTGTTAGGAAGTAT
1 GATGCACTGCATGAATATGACGATGTGTGGTAAACATGCATGGGAAATTATGTGTTAGGAAGTAT
*
37769648 AATTCTATTAAGATTATAAGCAAAATCTATGTAGATATGTCTATTATGTTATTTGAGTGATGCAT
66 AATTCTATTAAGATTATAAGCAAAATCTATGTAGATATGTCCATTATGTTATTTGAGTGATGCAT
* *
37769713 GACTAAGTATGGTTGGTGCTAAAGGGGTTCAGGCGGAGTGTCGAGAAAGTATGTGATACAATGAC
131 GACTAAGTATGGTTGGTGATAAGGGGGTTCAGGCGGAGTGTCGAGAAAGTATGTGATACAATGAC
*
37769778 GGACCCCGCGGTGGTGCTTTGATGACGTCTGCTAGGACAGTAAACATGAAGTCCAGTATGGTGAA
196 GGACCCCGCGGTGGTGCTTTGATGACTTC-GCTAGGACAGTAAACATGAAGTCCAGTATGGTGAA
*
37769843 ATGTAGGCCATCGGGACCATAAACACGAGAATCGCTGAGATAGTAAAAATGAGAAAGGCTAATGT
260 ATGTAGTCCATCGGGACCATAAACACGAGAATCGCTGAGATAGTAAAAATGAGAAAGGCTAATGT
37769908 GC
325 GC
*
37769910 GATGCACTGCATGAATATGACGATGTGTGGTAAACATGCATGGGAAATTATGTGTTAGAAAGTAT
1 GATGCACTGCATGAATATGACGATGTGTGGTAAACATGCATGGGAAATTATGTGTTAGGAAGTAT
37769975 AATTCTATTAAGATTATAAGCAAAATCTATGTAGATATGTCCATTATGTTATTTGAGTGATGCAT
66 AATTCTATTAAGATTATAAGCAAAATCTATGTAGATATGTCCATTATGTTATTTGAGTGATGCAT
**
37770040 GACTAAGTATGGTTGGTGATAAGGGGGTTCAGGAAGAGTGTCGAGAAAGTATGTGATACAATGAC
131 GACTAAGTATGGTTGGTGATAAGGGGGTTCAGGCGGAGTGTCGAGAAAGTATGTGATACAATGAC
* * *
37770105 GGACCTCGCGGTGGTGCTTTGATGACATCCGCTAAGACAGTAAACATGAAGTCCAGTATGGTGAA
196 GGACCCCGCGGTGGTGCTTTGATGAC-TTCGCTAGGACAGTAAACATGAAGTCCAGTATGGTGAA
37770170 ATGTAGTCCATCGGGACCATAAACACGAGAATCGCTGAGATAGTAAAAATGAGAAAGGCTAATGT
260 ATGTAGTCCATCGGGACCATAAACACGAGAATCGCTGAGATAGTAAAAATGAGAAAGGCTAATGT
37770235 G
325 G
37770236 ACAGATATGT
Statistics
Matches: 626, Mismatches: 25, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
326 2 0.00
327 623 1.00
328 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (326 bp):
GATGCACTGCATGAATATGACGATGTGTGGTAAACATGCATGGGAAATTATGTGTTAGGAAGTAT
AATTCTATTAAGATTATAAGCAAAATCTATGTAGATATGTCCATTATGTTATTTGAGTGATGCAT
GACTAAGTATGGTTGGTGATAAGGGGGTTCAGGCGGAGTGTCGAGAAAGTATGTGATACAATGAC
GGACCCCGCGGTGGTGCTTTGATGACTTCGCTAGGACAGTAAACATGAAGTCCAGTATGGTGAAA
TGTAGTCCATCGGGACCATAAACACGAGAATCGCTGAGATAGTAAAAATGAGAAAGGCTAATGTG
C
Found at i:37770455 original size:25 final size:25
Alignment explanation
Indices: 37770427--37770485 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
37770417 TTCAATTGGG
*
37770427 AAGCCTTTGTGGCGAGTCACCTTTA
1 AAGCCTTTGTGGCGAGTCACCTGTA
*
37770452 AAGCCTTTATGGCGAGTCACCTGTA
1 AAGCCTTTGTGGCGAGTCACCTGTA
37770477 AAGCCTTTG
1 AAGCCTTTG
37770486 AAACACCCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (25 bp):
AAGCCTTTGTGGCGAGTCACCTGTA
Found at i:37771834 original size:25 final size:24
Alignment explanation
Indices: 37771800--37771907 Score: 108
Period size: 25 Copynumber: 4.3 Consensus size: 24
37771790 GTCGTTACAA
37771800 CCTTTGTGGCAAGTCACCTATAAAG
1 CCTTTGTGGCAA-TCACCTATAAAG
* *
37771825 CCTTTATGGCGAATCACCTGTAAAG
1 CCTTTGTGGC-AATCACCTATAAAG
* *
37771850 CCTTTGTGGTGAATCACCTAGAAAG
1 CCTTTGTGG-CAATCACCTATAAAG
* * * *
37771875 CCTTTGTGGTGAGTCACCTTTAAAT
1 CCTTTGTGG-CAATCACCTATAAAG
37771900 CCTTTGTG
1 CCTTTGTG
37771908 ACGATTCATT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
25 69 0.97
26 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (24 bp):
CCTTTGTGGCAATCACCTATAAAG
Found at i:37771875 original size:50 final size:50
Alignment explanation
Indices: 37771800--37771907 Score: 137
Period size: 50 Copynumber: 2.2 Consensus size: 50
37771790 GTCGTTACAA
*
37771800 CCTTTGTGGCAAGTCACCTATAAAGCCTTTATGGCGAATCACCTGTAAAG
1 CCTTTGTGGCAAGTCACCTAGAAAGCCTTTATGGCGAATCACCTGTAAAG
* * * * * *
37771850 CCTTTGTGGTGAA-TCACCTAGAAAGCCTTTGTGGTGAGTCACCTTTAAAT
1 CCTTTGTGG-CAAGTCACCTAGAAAGCCTTTATGGCGAATCACCTGTAAAG
37771900 CCTTTGTG
1 CCTTTGTG
37771908 ACGATTCATT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 48 0.96
51 2 0.04
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (50 bp):
CCTTTGTGGCAAGTCACCTAGAAAGCCTTTATGGCGAATCACCTGTAAAG
Found at i:37771925 original size:75 final size:75
Alignment explanation
Indices: 37771800--37771938 Score: 170
Period size: 75 Copynumber: 1.9 Consensus size: 75
37771790 GTCGTTACAA
* * **
37771800 CCTTTGTGGCAAGTCACCTATAAAGCCTTTATGGCGAATCACCTGTAAAGCCTTTGTGGTGAATC
1 CCTTTGTGGCAAGTCACCTATAAAGCCTTTATGACGAATCACCTGGAAAGCCTAAGTGGTGAATC
37771865 ACCTAGAAAG
66 ACCTAGAAAG
** * * * * **
37771875 CCTTTGTGGTGAGTCACCTTTAAATCCTTTGTGACGATTCATTTGGAAAGCCTAAGTGGTGAAT
1 CCTTTGTGGCAAGTCACCTATAAAGCCTTTATGACGAATCACCTGGAAAGCCTAAGTGGTGAAT
37771939 TGTTAGTCTG
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
75 52 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (75 bp):
CCTTTGTGGCAAGTCACCTATAAAGCCTTTATGACGAATCACCTGGAAAGCCTAAGTGGTGAATC
ACCTAGAAAG
Found at i:37773684 original size:45 final size:45
Alignment explanation
Indices: 37773578--37773825 Score: 157
Period size: 45 Copynumber: 5.5 Consensus size: 45
37773568 GTGGTGCCAC
* * **
37773578 AGTATCTTTCAACTATGGTCTTGATT--TTTAGCCCGATGTATTGCCAT
1 AGTATCTTTCAACTATGGTCTT-ATTCATTT---CCGATATAATATCAT
* *
37773625 AGTATCTGTCAACTATGGTCTTATTCATTTCGGA-ATTAATATCAT
1 AGTATCTTTCAACTATGGTCTTATTCATTTCCGATA-TAATATCAT
* * * *
37773670 AGTATCTTTTAACTATGGTCTTTTTCATTTCCGATATAGTGTCAT
1 AGTATCTTTCAACTATGGTCTTATTCATTTCCGATATAATATCAT
* * * * * *
37773715 AATATCTTTCAACTATGGTATTA-T-ATATTCCGGTTTGATACCAT
1 AGTATCTTTCAACTATGGTCTTATTCAT-TTCCGATATAATATCAT
* * * * * * * **
37773759 GGTGTTTTTCAACTATGATCTT-TCTCGTTTCGGGTATAATGCCAT
1 AGTATCTTTCAACTATGGTCTTAT-TCATTTCCGATATAATATCAT
*
37773804 AGTATCTTTCAACCATGGTCTT
1 AGTATCTTTCAACTATGGTCTT
37773826 TCTCGTTTCT
Statistics
Matches: 155, Mismatches: 38, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
43 2 0.01
44 28 0.18
45 96 0.62
46 5 0.03
47 21 0.14
48 3 0.02
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.44
Consensus pattern (45 bp):
AGTATCTTTCAACTATGGTCTTATTCATTTCCGATATAATATCAT
Found at i:37773810 original size:89 final size:90
Alignment explanation
Indices: 37773610--37773822 Score: 216
Period size: 89 Copynumber: 2.4 Consensus size: 90
37773600 GATTTTTAGC
* * * * * *
37773610 CCGATGTATTGCCATAGTATCTGTCAACTATGGTCTTATTCATTTCGGAATTAATATCATAGTAT
1 CCGATATAATGCCATAGTATCTTTCAACTATGGTATTATTCATTCCGGAATTAATACCATAGTAT
* *
37773675 CTTTTAACTATGGTCTTTTTCATTT
66 CTTTTAACTATGATCTTTCTCATTT
* * * * * * *
37773700 CCGATATAGTGTCATAATATCTTTCAACTATGGTATTATAT-ATTCCGG-TTTGATACCATGGTG
1 CCGATATAATGCCATAGTATCTTTCAACTATGGTATTAT-TCATTCCGGAATTAATACCATAGTA
*
37773763 T-TTTTCAACTATGATCTTTCTCGTTT
65 TCTTTT-AACTATGATCTTTCTCATTT
* * *
37773789 CGGGTATAATGCCATAGTATCTTTCAACCATGGT
1 CCGATATAATGCCATAGTATCTTTCAACTATGGT
37773823 CTTTCTCGTT
Statistics
Matches: 100, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
88 4 0.04
89 56 0.56
90 39 0.39
91 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.15, T:0.43
Consensus pattern (90 bp):
CCGATATAATGCCATAGTATCTTTCAACTATGGTATTATTCATTCCGGAATTAATACCATAGTAT
CTTTTAACTATGATCTTTCTCATTT
Found at i:37773829 original size:45 final size:45
Alignment explanation
Indices: 37773619--37773834 Score: 170
Period size: 45 Copynumber: 4.8 Consensus size: 45
37773609 CCCGATGTAT
* *
37773619 TGCCATAGTATCTGTCAACTATGGTCTTAT-TCATTT-CGGAATTAA
1 TGCCATAGTATCTTTCAACTATGGTCTT-TCTCATTTCCGGTA-TAA
** * * * *
37773664 TATCATAGTATCTTTTAACTATGGTCTTTTTCATTTCCGATATAG
1 TGCCATAGTATCTTTCAACTATGGTCTTTCTCATTTCCGGTATAA
* * * * * *
37773709 TGTCATAATATCTTTCAACTATGGT-ATTAT-ATATTCCGGTTTGA
1 TGCCATAGTATCTTTCAACTATGGTCTTTCTCAT-TTCCGGTATAA
* * * * * * *
37773753 TACCATGGTGTTTTTCAACTATGATCTTTCTCGTTTCGGGTATAA
1 TGCCATAGTATCTTTCAACTATGGTCTTTCTCATTTCCGGTATAA
* *
37773798 TGCCATAGTATCTTTCAACCATGGTCTTTCTCGTTTC
1 TGCCATAGTATCTTTCAACTATGGTCTTTCTCATTTC
37773835 TAATGTCAAT
Statistics
Matches: 131, Mismatches: 35, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
43 2 0.02
44 29 0.22
45 96 0.73
46 4 0.03
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.44
Consensus pattern (45 bp):
TGCCATAGTATCTTTCAACTATGGTCTTTCTCATTTCCGGTATAA
Found at i:37786332 original size:3 final size:3
Alignment explanation
Indices: 37786324--37786375 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
37786314 TAAATGAGTA
**
37786324 AAT AAT AAT AGC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37786372 AAT A
1 AAT A
37786376 TTTTGAAAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:37788252 original size:132 final size:132
Alignment explanation
Indices: 37788096--37788466 Score: 566
Period size: 132 Copynumber: 2.8 Consensus size: 132
37788086 TAACTTCCCT
* * *
37788096 ACTACCTTGGGAAGATAAGATTCACCATCTTTGATCTGTTCCACTACTGCTTAGGGAGACAAAAT
1 ACTATCTTGAGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAAAT
* * *
37788161 TTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGGCTAATGGCTTAAATCTGCTTCT
66 ATGCAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGGCTAATGACTTAAATCTGCTTCT
37788226 CC
131 CC
* * *
37788228 ACTATCTTGAGAAGATAAGATTCACAATCTTTGATCTGCTCCACTACTGCTTAGGGTGAGAAAAT
1 ACTATCTTGAGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAAAT
* * *
37788293 CTGCAATCTTCAACCTACTCCACTACTGCACAGGGAGATAGGGTTAATGACTTAAATCTGCTTCT
66 ATGCAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGGCTAATGACTTAAATCTGCTTCT
37788358 CC
131 CC
* *
37788360 ACTATCTTGAGAAGATAAGATTCACCA-CATTCGATCTGCTCCACTACTGCTTA-GGATGACAGA
1 ACTATCTTGAGAAGATAAGATTCACCATC-TTTGATCTGCTCCACTACTGCTTAGGGA-GACAAA
* *
37788423 ATATGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAGG
64 ATATGCAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGG
37788467 ATCTTTAATC
Statistics
Matches: 217, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
131 3 0.01
132 214 0.99
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
ACTATCTTGAGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAAAT
ATGCAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGGCTAATGACTTAAATCTGCTTCT
CC
Found at i:37788566 original size:132 final size:132
Alignment explanation
Indices: 37788430--37788692 Score: 375
Period size: 132 Copynumber: 2.0 Consensus size: 132
37788420 AGAATATGCA
* * * ** *
37788430 ATCTTCAACCTACTCCACTACTACTTAGGGAGATAGGATCTTTAATCTTTAACCTACTCCACTAC
1 ATCTTCAACCTACTCCACTACTACTTAAGGAGACAGAATCTGCAATCTTCAACCTACTCCACTAC
* *
37788495 TGTTTAAGGAGATAGGACTAATGGCTTAAATCTT-CTTCTCCACTATCTTGGGAAGATAAGATTC
66 TGCTTAAGGAGATAGGACTAATGGCTTAAAT-TTGCTTCTCCACTATCTTGAGAAGATAAGATTC
37788559 ACC
130 ACC
* * * * * *
37788562 ATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCTACTCCATTAC
1 ATCTTCAACCTACTCCACTACTACTTAAGGAGACAGAATCTGCAATCTTCAACCTACTCCACTAC
*
37788627 TGCTTAAGGAGATAGGACTAGTGGCTTAAATTTGCTTCTCCACTATCTTGAGAAGATAAGATTCA
66 TGCTTAAGGAGATAGGACTAATGGCTTAAATTTGCTTCTCCACTATCTTGAGAAGATAAGATTCA
37788692 C
131 C
37788693 TACCTTTGAT
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
131 2 0.02
132 113 0.98
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (132 bp):
ATCTTCAACCTACTCCACTACTACTTAAGGAGACAGAATCTGCAATCTTCAACCTACTCCACTAC
TGCTTAAGGAGATAGGACTAATGGCTTAAATTTGCTTCTCCACTATCTTGAGAAGATAAGATTCA
CC
Found at i:37788622 original size:44 final size:44
Alignment explanation
Indices: 37788398--37788635 Score: 125
Period size: 44 Copynumber: 5.4 Consensus size: 44
37788388 ATTCGATCTG
*
37788398 CTCCACTACTGCTT-AGGATGACAGAATATGCAATCTTCAACCTA
1 CTCCACTACTGCTTAAGG-TGACAGAATCTGCAATCTTCAACCTA
* * * * * ** *
37788442 CTCCACTACTACTTAGGGAGATAGGATCTTTAATCTTTAACCTA
1 CTCCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCTA
* * * * * *
37788486 CTCCACTACTGTTTAAGGAGATAGGA-CT--AATGGCTTAAATCTTCTT
1 CTCCACTACTGCTTAAGGTGACAGAATCTGCAAT--CTTCAA-C--CTA
* * * * * * *
37788532 CTCCACTA-T-CTTGGGAAGAT-A-AGATTC-ACCATCTTCGATCTG
1 CTCCACTACTGCTT---AAGGTGACAGAATCTGCAATCTTCAACCTA
37788574 CTCCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCTA
*
37788618 CTCCATTACTGCTTAAGG
1 CTCCACTACTGCTTAAGG
37788636 AGATAGGACT
Statistics
Matches: 145, Mismatches: 32, Indels: 34
0.69 0.15 0.16
Matches are distributed among these distances:
41 7 0.05
42 11 0.08
43 13 0.09
44 88 0.61
45 9 0.06
46 12 0.08
47 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
CTCCACTACTGCTTAAGGTGACAGAATCTGCAATCTTCAACCTA
Found at i:37788640 original size:176 final size:176
Alignment explanation
Indices: 37788297--37788643 Score: 536
Period size: 176 Copynumber: 2.0 Consensus size: 176
37788287 GAAAATCTGC
* **
37788297 AATCTTCAACCTACTCCACTACTGCACAGGGAGATAGGGTTAATGACTTAAATCTGCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCACAAGGAGATAGGACTAATGACTTAAATCTGCTTCTCCAC
37788362 TATCTTGAGAAGATAAGATTCACCACATTCGATCTGCTCCACTACTGCTTAGGATGACAGAATAT
66 TATCTTGAGAAGATAAGATTCACCACATTCGATCTGCTCCACTACTGCTTAGGATGACAGAATAT
*
37788427 GCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAGGATCTTT
131 GCAATCTTCAACCTACTCCACTACTACTTAAGGAGATAGGATCTTT
* *** * *
37788473 AATCTTTAACCTACTCCACTACTGTTTAAGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCACAAGGAGATAGGACTAATGACTTAAATCTGCTTCTCCAC
*
37788538 TATCTTGGGAAGATAAGATTCACCATC-TTCGATCTGCTCCACTACTGCTTAAGG-TGACAGAAT
66 TATCTTGAGAAGATAAGATTCACCA-CATTCGATCTGCTCCACTACTGCTT-AGGATGACAGAAT
* * *
37788601 CTGCAATCTTCAACCTACTCCATTACTGCTTAAGGAGATAGGA
129 ATGCAATCTTCAACCTACTCCACTACTACTTAAGGAGATAGGA
37788644 CTAGTGGCTT
Statistics
Matches: 155, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
176 151 0.97
177 4 0.03
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (176 bp):
AATCTTCAACCTACTCCACTACTGCACAAGGAGATAGGACTAATGACTTAAATCTGCTTCTCCAC
TATCTTGAGAAGATAAGATTCACCACATTCGATCTGCTCCACTACTGCTTAGGATGACAGAATAT
GCAATCTTCAACCTACTCCACTACTACTTAAGGAGATAGGATCTTT
Found at i:37788704 original size:132 final size:132
Alignment explanation
Indices: 37788473--37788719 Score: 406
Period size: 132 Copynumber: 1.9 Consensus size: 132
37788463 TAGGATCTTT
* *
37788473 AATCTTTAACCTACTCCACTACTGTTTAAGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCTTAAGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCAC
* *
37788538 TATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCT
66 TATCTTGAGAAGATAAGATTCACCACCTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCT
37788603 GC
131 GC
* *
37788605 AATCTTCAACCTACTCCATTACTGCTTAAGGAGATAGGACTAGTGGCTTAAAT-TTGCTTCTCCA
1 AATCTTCAACCTACTCCACTACTGCTTAAGGAGATAGGACTAATGGCTTAAATCTT-CTTCTCCA
* *
37788669 CTATCTTGAGAAGATAAGATTCACTACCTTTGATCTGCTCCACTACTGCTT
65 CTATCTTGAGAAGATAAGATTCACCACCTTCGATCTGCTCCACTACTGCTT
37788720 GGGAGAGTAA
Statistics
Matches: 106, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
131 2 0.02
132 104 0.98
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (132 bp):
AATCTTCAACCTACTCCACTACTGCTTAAGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCAC
TATCTTGAGAAGATAAGATTCACCACCTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCT
GC
Found at i:37788706 original size:308 final size:308
Alignment explanation
Indices: 37788165--37788719 Score: 885
Period size: 308 Copynumber: 1.8 Consensus size: 308
37788155 CAAAATTTGC
* * *
37788165 AATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGGCTAATGGCTTAAATCTGCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * *
37788230 TATCTTGAGAAGATAAGATTCACAATCTTTGATCTGCTCCACTACTGCTTAGGGTGAGAAAATCT
66 TATCTTGAGAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAAAATCT
* **
37788295 GCAATCTTCAACCTACTCCACTACTGCACAGGGAGATAGGGTTAATGACTTAAATCTGCTTCTCC
131 GCAATCTTCAACCTACTCCACTACTGCACAAGGAGATAGGACTAATGACTTAAATCTGCTTCTCC
37788360 ACTATCTTGAGAAGATAAGATTCACCACATTCGATCTGCTCCACTACTGCTTAGGATGACAGAAT
196 ACTATCTTGAGAAGATAAGATTCACCACATTCGATCTGCTCCACTACTGCTTAGGATGACAGAAT
37788425 ATGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAGGATCTTT
261 ATGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAGGATCTTT
* * * *
37788473 AATCTTTAACCTACTCCACTACTGTTTAAGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCAC
1 AATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
* * *
37788538 TATCTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCT
66 TATCTTGAGAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAAAATCT
* ** * * *
37788603 GCAATCTTCAACCTACTCCATTACTGCTTAAGGAGATAGGACTAGTGGCTTAAATTTGCTTCTCC
131 GCAATCTTCAACCTACTCCACTACTGCACAAGGAGATAGGACTAATGACTTAAATCTGCTTCTCC
* * *
37788668 ACTATCTTGAGAAGATAAGATTCACTACCTTTGATCTGCTCCACTACTGCTT
196 ACTATCTTGAGAAGATAAGATTCACCACATTCGATCTGCTCCACTACTGCTT
37788720 GGGAGAGTAA
Statistics
Matches: 222, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
308 222 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (308 bp):
AATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
TATCTTGAGAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTAAGGTGACAAAATCT
GCAATCTTCAACCTACTCCACTACTGCACAAGGAGATAGGACTAATGACTTAAATCTGCTTCTCC
ACTATCTTGAGAAGATAAGATTCACCACATTCGATCTGCTCCACTACTGCTTAGGATGACAGAAT
ATGCAATCTTCAACCTACTCCACTACTACTTAGGGAGATAGGATCTTT
Found at i:37788917 original size:44 final size:43
Alignment explanation
Indices: 37788867--37789654 Score: 152
Period size: 45 Copynumber: 18.1 Consensus size: 43
37788857 TAACGCAGAA
*
37788867 AGGCAAGATCTGCTATCTTTAACCAGGTCCACTGCAACCGATGG
1 AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA-CGATGG
* * * * * * *
37788911 AGGCAAGGCTTTG-T-T-TTTGATCTGCTTCACTGTTAACGCA-GG
1 AGGCAA-GATCTGCTATCTTTAACCAGCTCCACTG-CAACG-ATGG
*
37788953 AAGGCAAGATCTGCTATCTTTAACCAGTTCCACTGCAATCGATGG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA-CGATGG
* *** * *** *
37788998 AGGCAATG-T-T-TTAT-TTTCGGTCTGCTTTGCTGTTAACGCA-GG
1 AGGCAA-GATCTGCTATCTTT-AACCAGCTCCACTG-CAACG-ATGG
*
37789040 AAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAACCGATGG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA-CGATGG
* ** * * * * *
37789085 AGGCAAGACTTTG-T-T-TTCGATCTGCTTCGCTGTTAATAC-A-GG
1 AGGCAAGA-TCTGCTATCTTTAACCAGCTCCACTG--CA-ACGATGG
* * *
37789127 AAGGTAAGATTTGCTATCTTTAACCAGCTCCACTACAACCGATGG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA-CGATGG
* * ** * * * * *
37789172 AGGCAAGGCTTTG-T-T-TTCGATCTGCTTCGCTGTTAACGCA-GG
1 AGGCAA-GATCTGCTATCTTTAACCAGCTCCACTG-CAACG-ATGG
37789214 AAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAATCGATGG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA-CGATGG
* * *** * * * * * * *
37789259 AGGCAAGGCTTTG-T-T-TTTGGTCTGTTTCGCTGTTAACGCAAGA
1 AGGCAA-GATCTGCTATCTTTAACCAGCTCCACTG-CAACG-ATGG
* *
37789302 AGGCAAGATCTGTTATCTTTAATCAGCTCCACTGCAACCGATGG
1 AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA-CGATGG
* ** * * * ** *
37789346 AGGCAAGACTTTG-T-T-TTCGATCTGCTTCGTTGTTAACGCA-GG
1 AGGCAAGA-TCTGCTATCTTTAACCAGCTCCACTG-CAACG-ATGG
*
37789388 AAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA-CGATGG
* * ** * * * * * *
37789433 AGGCAAGGCTTTG-T-T-TTCGATCTGTTTCGCTGTTAACGCA-GG
1 AGGCAA-GATCTGCTATCTTTAACCAGCTCCACTG-CAACG-ATGG
* * *
37789475 AAGGCAAGATCTGCTATCTTTAACCAGCTTCGCTGTTAACGCA-GG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCACTG-CAACG-ATGG
*
37789520 AAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA-CGATGG
* * * * * * * *
37789565 AGGCAAGGCTTTG-T-T-TTCGATCTA-CTTCGCTGTTAACGCA-GG
1 AGGCAA-GATCTGCTATCTT-TAACCAGCTCCACTG-CAACG-ATGG
37789607 AAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
1 -AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA-CGATGG
37789652 AGG
1 AGG
37789655 TAAGGCTTTG
Statistics
Matches: 518, Mismatches: 150, Indels: 152
0.63 0.18 0.19
Matches are distributed among these distances:
41 3 0.01
42 136 0.26
43 95 0.18
44 98 0.19
45 183 0.35
46 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.29
Consensus pattern (43 bp):
AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACGATGG
Found at i:37788933 original size:87 final size:87
Alignment explanation
Indices: 37788833--37789503 Score: 1072
Period size: 87 Copynumber: 7.7 Consensus size: 87
37788823 GAGGTAAGAT
* * *
37788833 TTTGTTTTCGATCTGCTTCGCTATTAACGCAGAAAGGCAAGATCTGCTATCTTTAACCAGGTCCA
1 TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
37788898 CTGCAACCGATGGAGGCAAGGC
66 CTGCAACCGATGGAGGCAAGGC
* * *
37788920 TTTGTTTTTGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGTTCCA
1 TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
* * *
37788985 CTGCAATCGATGGAGGCAATGT
66 CTGCAACCGATGGAGGCAAGGC
* * * *
37789007 TTTATTTTCGGTCTGCTTTGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCA
1 TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
*
37789072 CTGCAACCGATGGAGGCAAGAC
66 CTGCAACCGATGGAGGCAAGGC
** * *
37789094 TTTGTTTTCGATCTGCTTCGCTGTTAATACAGGAAGGTAAGATTTGCTATCTTTAACCAGCTCCA
1 TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
*
37789159 CTACAACCGATGGAGGCAAGGC
66 CTGCAACCGATGGAGGCAAGGC
37789181 TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
1 TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
*
37789246 CTGCAATCGATGGAGGCAAGGC
66 CTGCAACCGATGGAGGCAAGGC
* * * * * *
37789268 TTTGTTTTTGGTCTGTTTCGCTGTTAACGCAAGAAGGCAAGATCTGTTATCTTTAATCAGCTCCA
1 TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
*
37789333 CTGCAACCGATGGAGGCAAGAC
66 CTGCAACCGATGGAGGCAAGGC
*
37789355 TTTGTTTTCGATCTGCTTCGTTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
1 TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
*
37789420 CTACAACCGATGGAGGCAAGGC
66 CTGCAACCGATGGAGGCAAGGC
*
37789442 TTTGTTTTCGATCTGTTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCT
1 TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCT
37789504 TCGCTGTTAA
Statistics
Matches: 530, Mismatches: 54, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 530 1.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (87 bp):
TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
CTGCAACCGATGGAGGCAAGGC
Found at i:37789601 original size:87 final size:87
Alignment explanation
Indices: 37789502--37789674 Score: 328
Period size: 87 Copynumber: 2.0 Consensus size: 87
37789492 CTTTAACCAG
37789502 CTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAG
1 CTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAG
37789567 GCAAGGCTTTGTTTTCGATCTA
66 GCAAGGCTTTGTTTTCGATCTA
*
37789589 CTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAG
1 CTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAG
*
37789654 GTAAGGCTTTGTTTTCGATCT
66 GCAAGGCTTTGTTTTCGATCT
37789675 TCACTGATCT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (87 bp):
CTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGAG
GCAAGGCTTTGTTTTCGATCTA
Found at i:37789606 original size:132 final size:132
Alignment explanation
Indices: 37789108--37789635 Score: 528
Period size: 132 Copynumber: 4.0 Consensus size: 132
37789098 TTTTCGATCT
** * *
37789108 GCTTCGCTGTTAATACAGGAAGGTAAGATTTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
1 GCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
*
37789173 GGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
66 GGCAAGGCTTTGTTTTCGATCTACTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
37789238 CA
131 CA
* * * * * *** * * * * **
37789240 GCTCCACTG-CAATCG-ATGG-AGGCAAGGCTTTG-T-T-TTTGGTCTGTTTCGCTGTTAA-CGC
1 GCTTCGCTGTTAA-CGCA-GGAAGGCAA-GATCTGCTATCTTTAACCAGCTCCACT-ACAACCG-
* * * * * * * * *
37789298 AAGAAGGCAAGATCTGTTATCTTT-AATC-AGCTCCACTG-CAAC-CGATGG-AGGCAAGACTTT
61 ATGGAGGCAAG-GCT-TTGT-TTTCGATCTA-CTTCGCTGTTAACGC-A-GGAAGGCAAGA-TCT
** * *
37789358 G-T-T-TTCGATCT
119 GCTATCTTTAACCA
*
37789369 GCTTCGTTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
1 GCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
**
37789434 GGCAAGGCTTTGTTTTCGATCTGTTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
66 GGCAAGGCTTTGTTTTCGATCTACTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
37789499 CA
131 CA
37789501 GCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
1 GCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
37789566 GGCAAGGCTTTGTTTTCGATCTACTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
66 GGCAAGGCTTTGTTTTCGATCTACTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
37789631 CA
131 CA
37789633 GCT
1 GCT
37789636 CCACTGCAAC
Statistics
Matches: 306, Mismatches: 63, Indels: 54
0.72 0.15 0.13
Matches are distributed among these distances:
128 3 0.01
129 45 0.15
130 39 0.13
131 38 0.12
132 178 0.58
133 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (132 bp):
GCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGGA
GGCAAGGCTTTGTTTTCGATCTACTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAAC
CA
Found at i:37791300 original size:12 final size:12
Alignment explanation
Indices: 37791286--37791339 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 12
37791276 TGGCCTCTCC
*
37791286 TTTTCTTTTTCC
1 TTTTCTTTTTCA
* *
37791298 TTTTCCCTTTTCT
1 TTTT-CTTTTTCA
37791311 TTTCTCTTTTTCA
1 TTT-TCTTTTTCA
*
37791324 TTTTCATTTTCA
1 TTTTCTTTTTCA
37791336 TTTT
1 TTTT
37791340 AACTTTGATT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
12 16 0.46
13 18 0.51
14 1 0.03
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTCTTTTTCA
Found at i:37791319 original size:19 final size:20
Alignment explanation
Indices: 37791284--37791322 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
37791274 CTTGGCCTCT
37791284 CCTTTTCTTTT-TCCTTTTC
1 CCTTTTCTTTTCTCCTTTTC
*
37791303 CCTTTTCTTTTCTCTTTTTC
1 CCTTTTCTTTTCTCCTTTTC
37791323 ATTTTCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (20 bp):
CCTTTTCTTTTCTCCTTTTC
Found at i:37796333 original size:3 final size:3
Alignment explanation
Indices: 37796325--37796363 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
37796315 TAAATGAGTA
** *
37796325 AAT AAT AAT AGC AAT AAT GAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37796364 TTGAAAGTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:37799508 original size:21 final size:22
Alignment explanation
Indices: 37799482--37799523 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
37799472 TAAATTGGAT
*
37799482 CTAAACACAT-AAATTTAAAAC
1 CTAAACAAATCAAATTTAAAAC
37799503 CTAAACAAATCAAATTTAAAA
1 CTAAACAAATCAAATTTAAAA
37799524 ACAACTTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.24
Consensus pattern (22 bp):
CTAAACAAATCAAATTTAAAAC
Found at i:37805620 original size:19 final size:19
Alignment explanation
Indices: 37805589--37805668 Score: 64
Period size: 19 Copynumber: 4.5 Consensus size: 19
37805579 GGAGAAGAAG
*
37805589 AAGAAAA-GAAAAGAA-AA
1 AAGAAAAGGGAAAGAATAA
*
37805606 ATAGAAATGGGAAAGAATAA
1 A-AGAAAAGGGAAAGAATAA
*
37805626 AAGAAAAGGG-AA-AA-AC
1 AAGAAAAGGGAAAGAATAA
* *
37805642 GAGAAAA-GGAAATAATAA
1 AAGAAAAGGGAAAGAATAA
37805660 AAGAAAAGG
1 AAGAAAAGG
37805669 AAAAAGAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
15 2 0.04
16 9 0.18
17 5 0.10
18 14 0.29
19 16 0.33
20 3 0.06
ACGTcount: A:0.69, C:0.01, G:0.24, T:0.06
Consensus pattern (19 bp):
AAGAAAAGGGAAAGAATAA
Found at i:37805653 original size:34 final size:33
Alignment explanation
Indices: 37805586--37805679 Score: 113
Period size: 34 Copynumber: 2.9 Consensus size: 33
37805576 GGTGGAGAAG
* * *
37805586 AAGAAGAAAAGAAAA-GAAAAATAGAAATGGGA
1 AAGAATAAAAGAAAAGGAAAAAGAGAAATAGGA
37805618 AAGAATAAAAGAAAAGGGAAAAACGAGAAA-AGGA
1 AAGAATAAAAGAAAA-GGAAAAA-GAGAAATAGGA
*
37805652 AATAATAAAAGAAAAGGAAAAAGA-AAAT
1 AAGAATAAAAGAAAAGGAAAAAGAGAAAT
37805680 GACATCATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
31 3 0.06
32 16 0.30
33 7 0.13
34 23 0.43
35 5 0.09
ACGTcount: A:0.70, C:0.01, G:0.22, T:0.06
Consensus pattern (33 bp):
AAGAATAAAAGAAAAGGAAAAAGAGAAATAGGA
Found at i:37805666 original size:18 final size:17
Alignment explanation
Indices: 37805615--37805678 Score: 67
Period size: 18 Copynumber: 3.7 Consensus size: 17
37805605 AATAGAAATG
37805615 GGAAAGAATAAAAGAAAA
1 GGAAA-AATAAAAGAAAA
* **
37805633 GGGAAAA-ACGAGAAAA
1 GGAAAAATAAAAGAAAA
37805649 GGAAATAATAAAAGAAAA
1 GGAAA-AATAAAAGAAAA
*
37805667 GGAAAAAGAAAA
1 GGAAAAATAAAA
37805679 TGACATCATC
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
16 11 0.30
17 10 0.27
18 16 0.43
ACGTcount: A:0.70, C:0.02, G:0.23, T:0.05
Consensus pattern (17 bp):
GGAAAAATAAAAGAAAA
Found at i:37805804 original size:23 final size:23
Alignment explanation
Indices: 37805752--37805805 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
37805742 TAACGGTGTT
* *
37805752 AGAAAAAGTACCAAACTAGTAGT
1 AGAAAAAGTACCAAACTAGCAGC
37805775 AGAAAAAGTACCAAACTAGCAGAC
1 AGAAAAAGTACCAAACTAGCAG-C
37805799 AGAAAAA
1 AGAAAAA
37805806 AGTTCGGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 21 0.75
24 7 0.25
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (23 bp):
AGAAAAAGTACCAAACTAGCAGC
Found at i:37809017 original size:15 final size:15
Alignment explanation
Indices: 37808993--37809039 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
37808983 AACTAATATA
37808993 ATTAAA-TTAATTTT
1 ATTAAATTTAATTTT
*
37809007 ATTAAATTTAAGTTT
1 ATTAAATTTAATTTT
*
37809022 ATTATAATATATATTTT
1 ATTA-AATTTA-ATTTT
37809039 A
1 A
37809040 ATTGCAGTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 6 0.22
15 11 0.41
16 5 0.19
17 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTAAATTTAATTTT
Found at i:37836355 original size:24 final size:23
Alignment explanation
Indices: 37836320--37836364 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
37836310 CTCTGGAGTT
*
37836320 TTCCGATGTTGGCTCACATGAAC
1 TTCCGATATTGGCTCACATGAAC
*
37836343 TTCCTGATATTGGCTCATATGA
1 TTCC-GATATTGGCTCACATGA
37836365 GTTTCCCGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (23 bp):
TTCCGATATTGGCTCACATGAAC
Found at i:37836370 original size:24 final size:23
Alignment explanation
Indices: 37836319--37836370 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
37836309 TCTCTGGAGT
*
37836319 TTTCCGATGTTGGCTCACATGAA
1 TTTCCGATATTGGCTCACATGAA
* * *
37836342 CTTCCTGATATTGGCTCATATGAG
1 TTTCC-GATATTGGCTCACATGAA
37836366 TTTCC
1 TTTCC
37836371 CGTTAATGGT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (23 bp):
TTTCCGATATTGGCTCACATGAA
Found at i:37836415 original size:25 final size:24
Alignment explanation
Indices: 37836329--37836432 Score: 93
Period size: 24 Copynumber: 4.2 Consensus size: 24
37836319 TTTCCGATGT
* * * *
37836329 TGGCTCACATGAACTTCCTGATAT
1 TGGCTCACATGAGCTTCCCGTTAA
* *
37836353 TGGCTCATATGAGTTTCCCGTTAA
1 TGGCTCACATGAGCTTCCCGTTAA
* * *
37836377 TGGTTCTC-TGGAGCTTCCCATTACA
1 TGGCTCACAT-GAGCTTCCCGTTA-A
37836402 TGGCTCACATGAGCTTCCCGTTATA
1 TGGCTCACATGAGCTTCCCGTTA-A
37836427 TGGCTC
1 TGGCTC
37836433 GAAAGAGCTT
Statistics
Matches: 62, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
23 1 0.02
24 34 0.55
25 26 0.42
26 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (24 bp):
TGGCTCACATGAGCTTCCCGTTAA
Found at i:37836440 original size:25 final size:25
Alignment explanation
Indices: 37836387--37836444 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
37836377 TGGTTCTCTG
*
37836387 GAGCTTCCCATTACATGGCTCACAT
1 GAGCTTCCCATTACATGGCTCACAA
* *
37836412 GAGCTTCCCGTTATATGGCTCGA-AA
1 GAGCTTCCCATTACATGGCTC-ACAA
37836437 GAGCTTCC
1 GAGCTTCC
37836445 TGTTTACATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (25 bp):
GAGCTTCCCATTACATGGCTCACAA
Found at i:37863740 original size:51 final size:50
Alignment explanation
Indices: 37863610--37863743 Score: 180
Period size: 50 Copynumber: 2.7 Consensus size: 50
37863600 AAAGTGATGG
* * *
37863610 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACTGGAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAATGATAGA
* * * *
37863660 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGG-ATAGTTCCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAAT-GAT-AGA
37863711 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
37863744 TGAACCGAAC
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
49 2 0.03
50 39 0.53
51 32 0.44
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAATGATAGA
Found at i:37865826 original size:51 final size:51
Alignment explanation
Indices: 37865771--37865961 Score: 203
Period size: 51 Copynumber: 3.8 Consensus size: 51
37865761 CCGGATCACA
** * *
37865771 TAGTAGCCTATACATAGTACTACACATGTGACCATCACTATCCGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACG
* * *
37865822 TAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTATCC-AGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGA-TACACG
* * * *
37865873 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGATACACG
*
37865923 TAGTAGCCTGCACATAGTACTACATACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
37865962 TTCACTTTCA
Statistics
Matches: 115, Mismatches: 17, Indels: 17
0.77 0.11 0.11
Matches are distributed among these distances:
49 4 0.03
50 40 0.35
51 68 0.59
52 2 0.02
53 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATACACG
Found at i:37865952 original size:101 final size:102
Alignment explanation
Indices: 37865769--37865953 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
37865759 TACCGGATCA
* * *
37865769 CATAGTAGCCTATACATAGTACTACACATGTGACCATCACTATCCGATACATGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
37865834 CATAGTACTACACACGTGATCGAAGCTATCCAGTACG
66 CATAGTACTACACACGTGATCGAAGCTATCCAGTACG
* * *
37865871 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTACACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTGC
*
37865934 ACATAGTACTACATACGTGA
65 ACATAGTACTACACACGTGA
37865954 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 38 0.51
102 33 0.44
103 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (102 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAGCTATCCAGTACG
Found at i:37869098 original size:42 final size:42
Alignment explanation
Indices: 37869051--37869186 Score: 132
Period size: 42 Copynumber: 3.2 Consensus size: 42
37869041 GTGTGCGCCC
*
37869051 AGGCCGTGTGAGTCACACAGGTAATGACACGGGCATGTGTCT
1 AGGCCGTGTGAGTCACACAGGTAAGGACACGGGCATGTGTCT
* * * *
37869093 AGGCCGTGTGAGTAACAC-GGATAAGGACACAGGTATGTGTCC
1 AGGCCGTGTGAGTCACACAGG-TAAGGACACGGGCATGTGTCT
** ** * * *
37869135 AAACTTTGTGAGCCACACAGGCAAGGACATGGGCATGTG-CTT
1 AGGCCGTGTGAGTCACACAGGTAAGGACACGGGCATGTGTC-T
37869177 AGGCCGTGTG
1 AGGCCGTGTG
37869187 GCATGTAAAA
Statistics
Matches: 71, Mismatches: 20, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
41 3 0.04
42 66 0.93
43 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.33, T:0.21
Consensus pattern (42 bp):
AGGCCGTGTGAGTCACACAGGTAAGGACACGGGCATGTGTCT
Found at i:37870656 original size:232 final size:235
Alignment explanation
Indices: 37870164--37870697 Score: 603
Period size: 232 Copynumber: 2.2 Consensus size: 235
37870154 GTAGGAGTAT
* * * * *
37870164 TAACTTTTATATGTGTGAAAAGTATAATGATTTAAAGCATATTCCAAACAGTATGATAATAAACA
1 TAACTTTTAAATGTATGAAAAGTAT-AGGATTTAGAGCATATTTCAAACA--AT-ATAATAAACA
* *
37870229 ATAAAATGTAATGTGCTACTAGTATATATAACTATTATTATATTATAGATTATAATAAAAAAATA
62 ATAAAATATAATGTACTACTAGTATATATAAC--TTATTATATTATAGATTATAATAAAAAAATA
* * *
37870294 TAATATTACATGATATGATAATGTTTAATCATTTATGCATATATTTAAACTTTTAATATATTATA
125 TAATATTACATGATATGATAATGTTTAATCATTGATACATATATATAAAC---T--TATATTATA
* ** *
37870359 TATTATATACTATATGATATGATATAACATTATATACTATGGTAAGAGGGC
185 TATTATATACTATATGATATGATATAACATTATATAATATAATAAGAAGGC
* * * *
37870410 TAACTTTCAAATGTATGAAAAATATAGGGACTTAGAGCATATTTCAAACAATATAATAAATAATA
1 TAACTTTTAAATGTATGAAAAGTATA-GGATTTAGAGCATATTTCAAACAATATAATAAACAATA
** * *
37870475 GTATATAATGTACTATTA-TCATATATAAC-TATTATATTATAGATTATAAT-AAAAGATATAAT
65 AAATATAATGTACTACTAGT-ATATATAACTTATTATATTATAGATTATAATAAAAAAATATAAT
* * *
37870537 ATTACTTGATATTATAATGTTTAATCATTGATACATATATATAAAC-TAT-TTATTTATTATATA
129 ATTACATGATATGATAATGTTTAATCATTGATACATATATATAAACTTATATTATATATTATATA
* *
37870600 CTATTTGATATGATATAACATTTTATAATATAAT-AGTAAGGC
194 CTATATGATATGATATAACATTATATAATATAATAAG-AAGGC
* * * * *
37870642 TAACTTTTAAATGTACGATAAGTATAGGATTTTAGAACATATTTCAACCAGTATAA
1 TAACTTTTAAATGTATGAAAAGTATAGGA-TTTAGAGCATATTTCAAACAATATAA
37870698 CAATAAATTA
Statistics
Matches: 249, Mismatches: 35, Indels: 22
0.81 0.11 0.07
Matches are distributed among these distances:
231 5 0.02
232 90 0.36
233 3 0.01
239 52 0.21
240 21 0.08
242 1 0.00
243 34 0.14
244 2 0.01
245 1 0.00
246 40 0.16
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.40
Consensus pattern (235 bp):
TAACTTTTAAATGTATGAAAAGTATAGGATTTAGAGCATATTTCAAACAATATAATAAACAATAA
AATATAATGTACTACTAGTATATATAACTTATTATATTATAGATTATAATAAAAAAATATAATAT
TACATGATATGATAATGTTTAATCATTGATACATATATATAAACTTATATTATATATTATATACT
ATATGATATGATATAACATTATATAATATAATAAGAAGGC
Found at i:37870733 original size:232 final size:235
Alignment explanation
Indices: 37870264--37870966 Score: 574
Period size: 255 Copynumber: 2.9 Consensus size: 235
37870254 ATATAACTAT
*
37870264 TATTATATTATAGATTATAATAAAAAAATATAATATTACATGATATGATAATGTTTAATCATTTA
1 TATTATATTATAGATTATAATAAAAAAATATAATATTACATGATATGATAATGTTTAATCATTGA
* *
37870329 TGCATATATTTAAACTTTTAATATATTATATATTATATACTATATGATATGATATAACATTATAT
66 TACATATATATAAAC---T--TATATTATATATTATATACTATATGATATGATATAACATTATAT
* ** * * *
37870394 ACTATGGTAAGAGGGCTAACTTTCAAATGTATGAAAAATATAGGGACTTAGAGCATATTTCAAAC
126 AATATAATAAGAAGGCTAACTTTCAAATGTACGAAAAATATAGGGACTTAGAACATATTTCAAAC
* * *
37870459 AATATAATAAATAATAGTATATAATGTACTATTATCATATATAAC
191 AATATAATAAATAATAGTATATAATATACTATAATAATATATAAC
* * *
37870504 TATTATATTATAGATTATAAT-AAAAGATATAATATTACTTGATATTATAATGTTTAATCATTGA
1 TATTATATTATAGATTATAATAAAAAAATATAATATTACATGATATGATAATGTTTAATCATTGA
* * *
37870568 TACATATATATAAAC-TAT-TTATTTATTATATACTATTTGATATGATATAACATTTTATAATAT
66 TACATATATATAAACTTATATTATATATTATATACTATATGATATGATATAACATTATATAATAT
* * * * * *
37870631 AAT-AGTAAGGCTAACTTTTAAATGTACGATAAGTATA-GGATTTTAGAACATATTTCAACCAGT
131 AATAAG-AAGGCTAACTTTCAAATGTACGAAAAATATAGGGA-CTTAGAACATATTTCAAACAAT
* *
37870694 ATAA-CAATAA-A-T-TATAATATACGATAATAATTAATATATAATA
194 ATAATAAATAATAGTATATAATATAC--T-ATAA-TAATATATAA-C
* * * *
37870737 TACTTCTATGATTTATA-ACTTTTATTTTATTGTAGTTTATAACAAAAGATATAGCATTGCCTGA
1 TA--T-TAT-A-TTATAGA---TTA---TA----A---TA-AA-AAAATATA-A-TATTACATGA
* * * *
37870801 TATTATAATGTTTAATCATCGATGCATATATATAAAC-TAT-TAATATATTATATACTATATGAT
44 TATGATAATGTTTAATCATTGATACATATATATAAACTTATATTATATATTATATACTATATGAT
* * * *
37870864 ATGATATAACATTATATAATATAGTAAGATGGCTAATTTTTAAACT-TAC-AAAAAGTATAGGGA
109 ATGATATAACATTATATAATATAATAAGAAGGCTAACTTTCAAA-TGTACGAAAAA-TATAGGGA
* * * * *
37870927 CTCTA-AGCATATTTCAACCAGTAT-ATAACTAATAATATAT
172 CT-TAGAACATATTTCAAACAATATAATAAATAATAGTATAT
37870967 GATAAAAATG
Statistics
Matches: 378, Mismatches: 46, Indels: 60
0.78 0.10 0.12
Matches are distributed among these distances:
228 9 0.02
229 1 0.00
230 2 0.01
231 13 0.03
232 99 0.26
233 5 0.01
235 1 0.00
236 3 0.01
237 2 0.01
238 5 0.01
239 52 0.14
240 24 0.06
243 2 0.01
247 1 0.00
250 1 0.00
252 2 0.01
253 6 0.02
254 5 0.01
255 132 0.35
256 9 0.02
257 1 0.00
258 3 0.01
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (235 bp):
TATTATATTATAGATTATAATAAAAAAATATAATATTACATGATATGATAATGTTTAATCATTGA
TACATATATATAAACTTATATTATATATTATATACTATATGATATGATATAACATTATATAATAT
AATAAGAAGGCTAACTTTCAAATGTACGAAAAATATAGGGACTTAGAACATATTTCAAACAATAT
AATAAATAATAGTATATAATATACTATAATAATATATAAC
Found at i:37870848 original size:17 final size:18
Alignment explanation
Indices: 37870826--37870886 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 18
37870816 TCATCGATGC
37870826 ATATATATAAACTAT-TA
1 ATATATATAAACTATATA
* *
37870843 ATATATTATATACTATATG
1 ATATA-TATAAACTATATA
*
37870862 ATATGATATAACATTATATA
1 ATAT-ATATAA-ACTATATA
37870882 ATATA
1 ATATA
37870887 GTAAGATGGC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 5 0.14
18 9 0.26
19 10 0.29
20 11 0.31
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (18 bp):
ATATATATAAACTATATA
Found at i:37872007 original size:9 final size:9
Alignment explanation
Indices: 37871993--37872018 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
37871983 TATATAAAAG
37871993 AAATCTATT
1 AAATCTATT
37872002 AAATCTATT
1 AAATCTATT
37872011 AAATCTAT
1 AAATCTAT
37872019 ATATATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (9 bp):
AAATCTATT
Found at i:37873925 original size:70 final size:70
Alignment explanation
Indices: 37873812--37873953 Score: 284
Period size: 70 Copynumber: 2.0 Consensus size: 70
37873802 TGAATGAGAA
37873812 GAAGAAAGAAAGGGTTGATGGGAGAGGAAAAAAGCGAGCGATAGTCAACTTGAAAGCTGACACCG
1 GAAGAAAGAAAGGGTTGATGGGAGAGGAAAAAAGCGAGCGATAGTCAACTTGAAAGCTGACACCG
37873877 CCACT
66 CCACT
37873882 GAAGAAAGAAAGGGTTGATGGGAGAGGAAAAAAGCGAGCGATAGTCAACTTGAAAGCTGACACCG
1 GAAGAAAGAAAGGGTTGATGGGAGAGGAAAAAAGCGAGCGATAGTCAACTTGAAAGCTGACACCG
37873947 CCACT
66 CCACT
37873952 GA
1 GA
37873954 GCAAAATAAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.40, C:0.15, G:0.32, T:0.13
Consensus pattern (70 bp):
GAAGAAAGAAAGGGTTGATGGGAGAGGAAAAAAGCGAGCGATAGTCAACTTGAAAGCTGACACCG
CCACT
Found at i:37875592 original size:27 final size:29
Alignment explanation
Indices: 37875552--37875608 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 29
37875542 ATAGATGACT
*
37875552 CAACTCTTGTTCAAAC-ACTTGTTTGAACA
1 CAACTCTTGTTCAAACAACTT-TTTAAACA
37875581 CAAC-CTT-TTCAAACAACTTTTTAAACA
1 CAACTCTTGTTCAAACAACTTTTTAAACA
37875608 C
1 C
37875609 TTATTTAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 15 0.58
28 7 0.27
29 4 0.15
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.33
Consensus pattern (29 bp):
CAACTCTTGTTCAAACAACTTTTTAAACA
Done.